Multiple sequence alignment - TraesCS1B01G060900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G060900 chr1B 100.000 5241 0 0 1 5241 45202443 45197203 0.000000e+00 9679.0
1 TraesCS1B01G060900 chr1B 84.680 718 93 9 3987 4693 44989363 44988652 0.000000e+00 701.0
2 TraesCS1B01G060900 chr1B 84.540 718 94 9 3987 4693 45032452 45031741 0.000000e+00 695.0
3 TraesCS1B01G060900 chr1B 77.644 331 41 24 958 1284 297184286 297183985 2.510000e-38 171.0
4 TraesCS1B01G060900 chr7A 87.415 2638 224 59 1362 3934 13801050 13798456 0.000000e+00 2933.0
5 TraesCS1B01G060900 chr7A 88.547 716 49 18 3976 4685 13798317 13797629 0.000000e+00 837.0
6 TraesCS1B01G060900 chr7A 89.510 429 40 1 4262 4690 13776917 13776494 5.970000e-149 538.0
7 TraesCS1B01G060900 chr7A 80.581 551 80 20 6 540 657082280 657082819 2.940000e-107 399.0
8 TraesCS1B01G060900 chr7A 91.822 269 22 0 4421 4689 13789543 13789275 4.960000e-100 375.0
9 TraesCS1B01G060900 chr7A 97.674 43 1 0 1067 1109 13801601 13801559 2.020000e-09 75.0
10 TraesCS1B01G060900 chr7D 89.200 2213 158 36 2509 4693 14549593 14547434 0.000000e+00 2687.0
11 TraesCS1B01G060900 chr7D 84.952 1143 106 32 1043 2155 14551986 14550880 0.000000e+00 1098.0
12 TraesCS1B01G060900 chr7D 88.665 547 51 5 1 540 351443238 351443780 0.000000e+00 656.0
13 TraesCS1B01G060900 chr7D 92.500 360 22 3 2141 2497 14550698 14550341 1.300000e-140 510.0
14 TraesCS1B01G060900 chr7D 86.711 301 34 4 622 918 117686338 117686040 3.910000e-86 329.0
15 TraesCS1B01G060900 chr7D 82.456 171 23 5 3677 3843 538824675 538824842 5.470000e-30 143.0
16 TraesCS1B01G060900 chr7D 87.838 74 7 2 4522 4595 14166680 14166609 9.350000e-13 86.1
17 TraesCS1B01G060900 chr7D 92.453 53 4 0 3770 3822 32375062 32375010 5.630000e-10 76.8
18 TraesCS1B01G060900 chr7D 95.652 46 2 0 3777 3822 37101653 37101608 2.020000e-09 75.0
19 TraesCS1B01G060900 chr4A 88.530 2232 165 34 1328 3506 722409813 722412006 0.000000e+00 2619.0
20 TraesCS1B01G060900 chr4A 89.141 1188 72 24 3541 4690 722412727 722413895 0.000000e+00 1426.0
21 TraesCS1B01G060900 chr4A 79.310 145 5 5 965 1109 722409216 722409335 1.560000e-10 78.7
22 TraesCS1B01G060900 chr2B 95.628 549 20 3 4694 5241 91599187 91598642 0.000000e+00 878.0
23 TraesCS1B01G060900 chr2B 81.329 316 53 4 622 933 88624631 88624318 8.710000e-63 252.0
24 TraesCS1B01G060900 chr2B 85.915 71 10 0 467 537 644114314 644114384 5.630000e-10 76.8
25 TraesCS1B01G060900 chrUn 85.035 715 90 9 3987 4690 249818039 249818747 0.000000e+00 712.0
26 TraesCS1B01G060900 chrUn 86.299 489 60 4 54 539 327583668 327584152 4.650000e-145 525.0
27 TraesCS1B01G060900 chrUn 86.299 489 60 4 54 539 327586665 327587149 4.650000e-145 525.0
28 TraesCS1B01G060900 chrUn 82.188 320 49 5 618 931 79229023 79228706 8.650000e-68 268.0
29 TraesCS1B01G060900 chr7B 87.253 557 60 5 4 556 427605105 427604556 4.460000e-175 625.0
30 TraesCS1B01G060900 chr5B 86.213 544 65 4 1 539 473128054 473128592 9.780000e-162 580.0
31 TraesCS1B01G060900 chr3D 86.137 541 64 4 4 539 461042161 461041627 1.640000e-159 573.0
32 TraesCS1B01G060900 chr3D 82.759 319 46 5 618 931 401166561 401166875 5.170000e-70 276.0
33 TraesCS1B01G060900 chr3D 77.707 314 58 10 1991 2294 548685996 548685685 1.160000e-41 182.0
34 TraesCS1B01G060900 chr5D 94.737 285 10 2 4 283 508959170 508958886 6.230000e-119 438.0
35 TraesCS1B01G060900 chr5D 78.521 568 78 24 4694 5241 460675547 460675004 3.020000e-87 333.0
36 TraesCS1B01G060900 chr5D 95.238 42 2 0 3495 3536 539865399 539865358 3.390000e-07 67.6
37 TraesCS1B01G060900 chr1A 89.222 334 31 3 4361 4693 29010972 29010643 3.780000e-111 412.0
38 TraesCS1B01G060900 chr4B 81.308 321 51 6 618 931 82604846 82605164 8.710000e-63 252.0
39 TraesCS1B01G060900 chr2D 80.000 350 60 8 603 944 429086741 429087088 3.130000e-62 250.0
40 TraesCS1B01G060900 chr6B 81.553 309 49 6 629 931 576249119 576248813 1.130000e-61 248.0
41 TraesCS1B01G060900 chr6B 80.707 311 52 5 627 931 58806176 58806484 8.770000e-58 235.0
42 TraesCS1B01G060900 chr6B 80.317 315 56 3 622 931 550720804 550721117 3.160000e-57 233.0
43 TraesCS1B01G060900 chr2A 83.537 164 26 1 375 537 752561116 752560953 9.090000e-33 152.0
44 TraesCS1B01G060900 chr2A 90.909 44 4 0 496 539 205702357 205702314 5.670000e-05 60.2
45 TraesCS1B01G060900 chr5A 84.000 125 11 4 2717 2841 565256187 565256072 1.540000e-20 111.0
46 TraesCS1B01G060900 chr5A 87.879 66 7 1 3484 3548 635335314 635335379 5.630000e-10 76.8
47 TraesCS1B01G060900 chr3B 87.671 73 6 3 3707 3777 785077862 785077791 1.210000e-11 82.4
48 TraesCS1B01G060900 chr3B 91.837 49 4 0 3769 3817 465672825 465672873 9.420000e-08 69.4
49 TraesCS1B01G060900 chr3A 87.097 62 8 0 3491 3552 690221394 690221455 2.620000e-08 71.3
50 TraesCS1B01G060900 chr3A 88.679 53 1 2 2026 2078 700230698 700230745 5.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G060900 chr1B 45197203 45202443 5240 True 9679.000000 9679 100.000000 1 5241 1 chr1B.!!$R3 5240
1 TraesCS1B01G060900 chr1B 44988652 44989363 711 True 701.000000 701 84.680000 3987 4693 1 chr1B.!!$R1 706
2 TraesCS1B01G060900 chr1B 45031741 45032452 711 True 695.000000 695 84.540000 3987 4693 1 chr1B.!!$R2 706
3 TraesCS1B01G060900 chr7A 13797629 13801601 3972 True 1281.666667 2933 91.212000 1067 4685 3 chr7A.!!$R3 3618
4 TraesCS1B01G060900 chr7A 657082280 657082819 539 False 399.000000 399 80.581000 6 540 1 chr7A.!!$F1 534
5 TraesCS1B01G060900 chr7D 14547434 14551986 4552 True 1431.666667 2687 88.884000 1043 4693 3 chr7D.!!$R5 3650
6 TraesCS1B01G060900 chr7D 351443238 351443780 542 False 656.000000 656 88.665000 1 540 1 chr7D.!!$F1 539
7 TraesCS1B01G060900 chr4A 722409216 722413895 4679 False 1374.566667 2619 85.660333 965 4690 3 chr4A.!!$F1 3725
8 TraesCS1B01G060900 chr2B 91598642 91599187 545 True 878.000000 878 95.628000 4694 5241 1 chr2B.!!$R2 547
9 TraesCS1B01G060900 chrUn 249818039 249818747 708 False 712.000000 712 85.035000 3987 4690 1 chrUn.!!$F1 703
10 TraesCS1B01G060900 chrUn 327583668 327587149 3481 False 525.000000 525 86.299000 54 539 2 chrUn.!!$F2 485
11 TraesCS1B01G060900 chr7B 427604556 427605105 549 True 625.000000 625 87.253000 4 556 1 chr7B.!!$R1 552
12 TraesCS1B01G060900 chr5B 473128054 473128592 538 False 580.000000 580 86.213000 1 539 1 chr5B.!!$F1 538
13 TraesCS1B01G060900 chr3D 461041627 461042161 534 True 573.000000 573 86.137000 4 539 1 chr3D.!!$R1 535
14 TraesCS1B01G060900 chr5D 460675004 460675547 543 True 333.000000 333 78.521000 4694 5241 1 chr5D.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 3542 0.031515 TAAAGATGAGGGCCCTCGGA 60.032 55.0 40.12 28.05 45.48 4.55 F
1176 4137 0.031585 TTGCTTGCTTGCTTGCTGAG 59.968 50.0 10.35 3.19 0.00 3.35 F
1602 4848 0.040958 CAGCAGTCTGTTTCCGTTGC 60.041 55.0 0.93 0.00 35.61 4.17 F
2833 7055 0.179137 GGCAGCCGCTAATTTTGGAC 60.179 55.0 0.00 0.00 38.60 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 4622 0.171903 CAACATGGCCAAGCAGCTAC 59.828 55.0 10.96 0.00 0.00 3.58 R
2783 7005 0.321671 AGGCGCTAAGTTGCTTCTCA 59.678 50.0 7.64 0.00 0.00 3.27 R
3506 7740 0.753262 ACATCCGGGTGTAGATGAGC 59.247 55.0 21.57 0.00 42.04 4.26 R
4513 9600 0.323725 AGGTGCACCCATCAACCATC 60.324 55.0 32.29 2.51 36.42 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 3055 2.509336 CAGGCTGTTCGCTACCCG 60.509 66.667 6.28 0.00 39.13 5.28
109 3056 3.771160 AGGCTGTTCGCTACCCGG 61.771 66.667 0.00 0.00 39.13 5.73
110 3057 3.766691 GGCTGTTCGCTACCCGGA 61.767 66.667 0.73 0.00 39.13 5.14
111 3058 2.508663 GCTGTTCGCTACCCGGAC 60.509 66.667 0.73 0.00 45.88 4.79
211 3158 1.224592 GCATCTGTCCGACCCCAAT 59.775 57.895 0.00 0.00 0.00 3.16
260 3219 1.153568 CGAGGAGCGAATCTGCCAA 60.154 57.895 0.00 0.00 44.57 4.52
282 3241 0.596600 TCGTGAGCGTTGAGGTGTTC 60.597 55.000 0.00 0.00 39.49 3.18
288 3247 1.019805 GCGTTGAGGTGTTCTAGGGC 61.020 60.000 0.00 0.00 0.00 5.19
295 3254 3.011369 TGAGGTGTTCTAGGGCTCTCTAA 59.989 47.826 0.00 0.00 0.00 2.10
357 3316 4.477249 CCCAATTAAATCTCAGATGCCCT 58.523 43.478 0.00 0.00 0.00 5.19
362 3321 8.139989 CCAATTAAATCTCAGATGCCCTAAAAG 58.860 37.037 0.00 0.00 0.00 2.27
372 3332 1.381076 CCCTAAAAGGCCACCGGAA 59.619 57.895 9.46 0.00 32.73 4.30
373 3333 0.033503 CCCTAAAAGGCCACCGGAAT 60.034 55.000 9.46 0.00 32.73 3.01
413 3374 1.406069 CGCTCTTGGTGAAGCCTGTAT 60.406 52.381 0.00 0.00 38.35 2.29
436 3397 3.790212 GCGATTTAGGGCGATTAAGAC 57.210 47.619 0.00 0.00 0.00 3.01
444 3405 6.488769 TTAGGGCGATTAAGACCAAATCTA 57.511 37.500 0.00 0.00 43.43 1.98
483 3444 1.837439 AGGTGATGATCCAACGGCTAA 59.163 47.619 0.00 0.00 0.00 3.09
508 3469 2.695666 TGCTAATAGCCTGAGAGGACAC 59.304 50.000 10.06 0.00 41.51 3.67
514 3475 1.416401 AGCCTGAGAGGACACGAAAAA 59.584 47.619 0.00 0.00 37.67 1.94
579 3540 2.938956 AATAAAGATGAGGGCCCTCG 57.061 50.000 40.12 0.00 45.48 4.63
580 3541 1.059913 ATAAAGATGAGGGCCCTCGG 58.940 55.000 40.12 0.00 45.48 4.63
581 3542 0.031515 TAAAGATGAGGGCCCTCGGA 60.032 55.000 40.12 28.05 45.48 4.55
582 3543 1.627297 AAAGATGAGGGCCCTCGGAC 61.627 60.000 40.12 32.05 45.48 4.79
583 3544 2.444895 GATGAGGGCCCTCGGACT 60.445 66.667 40.12 26.94 45.48 3.85
584 3545 2.041265 ATGAGGGCCCTCGGACTT 59.959 61.111 40.12 22.60 45.48 3.01
585 3546 0.759436 GATGAGGGCCCTCGGACTTA 60.759 60.000 40.12 25.88 45.48 2.24
586 3547 0.760945 ATGAGGGCCCTCGGACTTAG 60.761 60.000 40.12 0.00 45.48 2.18
587 3548 2.041819 AGGGCCCTCGGACTTAGG 60.042 66.667 22.28 0.00 0.00 2.69
588 3549 2.042230 GGGCCCTCGGACTTAGGA 60.042 66.667 17.04 0.00 36.08 2.94
589 3550 2.134933 GGGCCCTCGGACTTAGGAG 61.135 68.421 17.04 0.00 36.08 3.69
591 3552 2.798364 GCCCTCGGACTTAGGAGGC 61.798 68.421 1.54 0.00 46.87 4.70
596 3557 4.482431 GGACTTAGGAGGCCCTGT 57.518 61.111 0.00 0.00 46.32 4.00
597 3558 1.908483 GGACTTAGGAGGCCCTGTG 59.092 63.158 0.00 1.13 46.32 3.66
598 3559 1.222113 GACTTAGGAGGCCCTGTGC 59.778 63.158 0.00 0.00 44.15 4.57
608 3569 3.889692 CCCTGTGCCACCACACCT 61.890 66.667 0.00 0.00 46.51 4.00
609 3570 2.525124 CCCTGTGCCACCACACCTA 61.525 63.158 0.00 0.00 46.51 3.08
610 3571 1.685224 CCTGTGCCACCACACCTAT 59.315 57.895 0.00 0.00 46.51 2.57
611 3572 0.038166 CCTGTGCCACCACACCTATT 59.962 55.000 0.00 0.00 46.51 1.73
612 3573 1.167851 CTGTGCCACCACACCTATTG 58.832 55.000 0.00 0.00 46.51 1.90
613 3574 0.893270 TGTGCCACCACACCTATTGC 60.893 55.000 0.00 0.00 46.51 3.56
614 3575 0.893270 GTGCCACCACACCTATTGCA 60.893 55.000 0.00 0.00 41.67 4.08
615 3576 0.893270 TGCCACCACACCTATTGCAC 60.893 55.000 0.00 0.00 0.00 4.57
616 3577 0.893270 GCCACCACACCTATTGCACA 60.893 55.000 0.00 0.00 0.00 4.57
617 3578 1.838112 CCACCACACCTATTGCACAT 58.162 50.000 0.00 0.00 0.00 3.21
618 3579 1.473677 CCACCACACCTATTGCACATG 59.526 52.381 0.00 0.00 0.00 3.21
619 3580 1.473677 CACCACACCTATTGCACATGG 59.526 52.381 0.00 0.00 0.00 3.66
620 3581 1.354031 ACCACACCTATTGCACATGGA 59.646 47.619 0.00 0.00 0.00 3.41
621 3582 2.224992 ACCACACCTATTGCACATGGAA 60.225 45.455 0.00 0.00 0.00 3.53
622 3583 2.824936 CCACACCTATTGCACATGGAAA 59.175 45.455 0.00 0.00 0.00 3.13
623 3584 3.367292 CCACACCTATTGCACATGGAAAC 60.367 47.826 0.00 0.00 0.00 2.78
624 3585 2.825532 ACACCTATTGCACATGGAAACC 59.174 45.455 0.00 0.00 0.00 3.27
625 3586 2.091541 ACCTATTGCACATGGAAACCG 58.908 47.619 0.00 0.00 0.00 4.44
626 3587 1.405105 CCTATTGCACATGGAAACCGG 59.595 52.381 0.00 0.00 0.00 5.28
627 3588 2.364632 CTATTGCACATGGAAACCGGA 58.635 47.619 9.46 0.00 0.00 5.14
628 3589 1.851304 ATTGCACATGGAAACCGGAT 58.149 45.000 9.46 0.00 0.00 4.18
629 3590 1.173043 TTGCACATGGAAACCGGATC 58.827 50.000 9.46 5.87 0.00 3.36
630 3591 0.679640 TGCACATGGAAACCGGATCC 60.680 55.000 19.94 19.94 37.48 3.36
631 3592 0.394352 GCACATGGAAACCGGATCCT 60.394 55.000 24.67 12.38 37.85 3.24
632 3593 1.668419 CACATGGAAACCGGATCCTC 58.332 55.000 24.67 0.00 37.85 3.71
633 3594 1.210478 CACATGGAAACCGGATCCTCT 59.790 52.381 24.67 13.66 37.85 3.69
634 3595 2.434336 CACATGGAAACCGGATCCTCTA 59.566 50.000 24.67 10.88 37.85 2.43
635 3596 3.112263 ACATGGAAACCGGATCCTCTAA 58.888 45.455 24.67 10.59 37.85 2.10
636 3597 3.118371 ACATGGAAACCGGATCCTCTAAC 60.118 47.826 24.67 0.00 37.85 2.34
637 3598 2.542550 TGGAAACCGGATCCTCTAACA 58.457 47.619 24.67 7.29 37.85 2.41
638 3599 3.112263 TGGAAACCGGATCCTCTAACAT 58.888 45.455 24.67 0.00 37.85 2.71
639 3600 4.291792 TGGAAACCGGATCCTCTAACATA 58.708 43.478 24.67 6.13 37.85 2.29
640 3601 4.100498 TGGAAACCGGATCCTCTAACATAC 59.900 45.833 24.67 2.91 37.85 2.39
641 3602 4.100498 GGAAACCGGATCCTCTAACATACA 59.900 45.833 19.60 0.00 33.98 2.29
642 3603 4.939052 AACCGGATCCTCTAACATACAG 57.061 45.455 9.46 0.00 0.00 2.74
643 3604 4.180377 ACCGGATCCTCTAACATACAGA 57.820 45.455 9.46 0.00 0.00 3.41
644 3605 4.543689 ACCGGATCCTCTAACATACAGAA 58.456 43.478 9.46 0.00 0.00 3.02
645 3606 4.960469 ACCGGATCCTCTAACATACAGAAA 59.040 41.667 9.46 0.00 0.00 2.52
646 3607 5.069251 ACCGGATCCTCTAACATACAGAAAG 59.931 44.000 9.46 0.00 0.00 2.62
647 3608 5.302059 CCGGATCCTCTAACATACAGAAAGA 59.698 44.000 10.75 0.00 0.00 2.52
648 3609 6.183360 CCGGATCCTCTAACATACAGAAAGAA 60.183 42.308 10.75 0.00 0.00 2.52
649 3610 7.265673 CGGATCCTCTAACATACAGAAAGAAA 58.734 38.462 10.75 0.00 0.00 2.52
650 3611 7.928706 CGGATCCTCTAACATACAGAAAGAAAT 59.071 37.037 10.75 0.00 0.00 2.17
651 3612 9.620259 GGATCCTCTAACATACAGAAAGAAATT 57.380 33.333 3.84 0.00 0.00 1.82
678 3639 8.959705 AGATTAGTTACAATACCCTAACTTGC 57.040 34.615 0.00 0.00 35.34 4.01
679 3640 7.991460 AGATTAGTTACAATACCCTAACTTGCC 59.009 37.037 0.00 0.00 35.34 4.52
680 3641 5.774102 AGTTACAATACCCTAACTTGCCT 57.226 39.130 0.00 0.00 30.47 4.75
681 3642 6.135819 AGTTACAATACCCTAACTTGCCTT 57.864 37.500 0.00 0.00 30.47 4.35
682 3643 6.178324 AGTTACAATACCCTAACTTGCCTTC 58.822 40.000 0.00 0.00 30.47 3.46
683 3644 4.929146 ACAATACCCTAACTTGCCTTCT 57.071 40.909 0.00 0.00 0.00 2.85
684 3645 5.256806 ACAATACCCTAACTTGCCTTCTT 57.743 39.130 0.00 0.00 0.00 2.52
685 3646 5.641155 ACAATACCCTAACTTGCCTTCTTT 58.359 37.500 0.00 0.00 0.00 2.52
686 3647 5.710567 ACAATACCCTAACTTGCCTTCTTTC 59.289 40.000 0.00 0.00 0.00 2.62
687 3648 3.876309 ACCCTAACTTGCCTTCTTTCA 57.124 42.857 0.00 0.00 0.00 2.69
688 3649 4.178956 ACCCTAACTTGCCTTCTTTCAA 57.821 40.909 0.00 0.00 0.00 2.69
689 3650 4.740902 ACCCTAACTTGCCTTCTTTCAAT 58.259 39.130 0.00 0.00 0.00 2.57
690 3651 4.524328 ACCCTAACTTGCCTTCTTTCAATG 59.476 41.667 0.00 0.00 0.00 2.82
691 3652 4.488879 CCTAACTTGCCTTCTTTCAATGC 58.511 43.478 0.00 0.00 0.00 3.56
692 3653 4.022068 CCTAACTTGCCTTCTTTCAATGCA 60.022 41.667 0.00 0.00 0.00 3.96
693 3654 4.612264 AACTTGCCTTCTTTCAATGCAT 57.388 36.364 0.00 0.00 0.00 3.96
694 3655 5.726980 AACTTGCCTTCTTTCAATGCATA 57.273 34.783 0.00 0.00 0.00 3.14
695 3656 5.927281 ACTTGCCTTCTTTCAATGCATAT 57.073 34.783 0.00 0.00 0.00 1.78
696 3657 5.899299 ACTTGCCTTCTTTCAATGCATATC 58.101 37.500 0.00 0.00 0.00 1.63
697 3658 5.655532 ACTTGCCTTCTTTCAATGCATATCT 59.344 36.000 0.00 0.00 0.00 1.98
698 3659 5.762825 TGCCTTCTTTCAATGCATATCTC 57.237 39.130 0.00 0.00 0.00 2.75
699 3660 5.443283 TGCCTTCTTTCAATGCATATCTCT 58.557 37.500 0.00 0.00 0.00 3.10
700 3661 5.298527 TGCCTTCTTTCAATGCATATCTCTG 59.701 40.000 0.00 0.00 0.00 3.35
701 3662 5.530171 GCCTTCTTTCAATGCATATCTCTGA 59.470 40.000 0.00 0.00 0.00 3.27
702 3663 6.293516 GCCTTCTTTCAATGCATATCTCTGAG 60.294 42.308 0.00 0.00 0.00 3.35
703 3664 6.293516 CCTTCTTTCAATGCATATCTCTGAGC 60.294 42.308 0.00 0.00 0.00 4.26
704 3665 5.061853 TCTTTCAATGCATATCTCTGAGCC 58.938 41.667 0.00 0.00 0.00 4.70
705 3666 4.701651 TTCAATGCATATCTCTGAGCCT 57.298 40.909 0.00 0.00 0.00 4.58
706 3667 5.813513 TTCAATGCATATCTCTGAGCCTA 57.186 39.130 0.00 0.00 0.00 3.93
707 3668 5.813513 TCAATGCATATCTCTGAGCCTAA 57.186 39.130 0.00 0.00 0.00 2.69
708 3669 6.178607 TCAATGCATATCTCTGAGCCTAAA 57.821 37.500 0.00 0.00 0.00 1.85
709 3670 6.594744 TCAATGCATATCTCTGAGCCTAAAA 58.405 36.000 0.00 0.00 0.00 1.52
710 3671 7.229308 TCAATGCATATCTCTGAGCCTAAAAT 58.771 34.615 0.00 0.00 0.00 1.82
711 3672 8.377799 TCAATGCATATCTCTGAGCCTAAAATA 58.622 33.333 0.00 0.00 0.00 1.40
712 3673 9.006839 CAATGCATATCTCTGAGCCTAAAATAA 57.993 33.333 0.00 0.00 0.00 1.40
713 3674 7.969536 TGCATATCTCTGAGCCTAAAATAAC 57.030 36.000 0.00 0.00 0.00 1.89
714 3675 7.739825 TGCATATCTCTGAGCCTAAAATAACT 58.260 34.615 0.00 0.00 0.00 2.24
715 3676 8.213679 TGCATATCTCTGAGCCTAAAATAACTT 58.786 33.333 0.00 0.00 0.00 2.66
716 3677 9.061435 GCATATCTCTGAGCCTAAAATAACTTT 57.939 33.333 0.00 0.00 0.00 2.66
747 3708 8.635877 TTTTGCGAATTACAATTTTACTGTGT 57.364 26.923 0.00 0.00 0.00 3.72
748 3709 9.731819 TTTTGCGAATTACAATTTTACTGTGTA 57.268 25.926 0.00 0.00 0.00 2.90
749 3710 8.716619 TTGCGAATTACAATTTTACTGTGTAC 57.283 30.769 0.00 0.00 0.00 2.90
750 3711 7.862648 TGCGAATTACAATTTTACTGTGTACA 58.137 30.769 0.00 0.00 0.00 2.90
751 3712 8.508062 TGCGAATTACAATTTTACTGTGTACAT 58.492 29.630 0.00 0.00 0.00 2.29
752 3713 9.337091 GCGAATTACAATTTTACTGTGTACATT 57.663 29.630 0.00 0.00 0.00 2.71
785 3746 8.402798 ACTACATACAAACAAATTGATGGTGA 57.597 30.769 0.00 0.00 41.85 4.02
786 3747 8.855110 ACTACATACAAACAAATTGATGGTGAA 58.145 29.630 0.00 0.00 41.85 3.18
787 3748 9.689976 CTACATACAAACAAATTGATGGTGAAA 57.310 29.630 0.00 0.00 41.85 2.69
851 3812 8.615878 TCAATAGTAAACAACATGCTAACTGT 57.384 30.769 0.00 0.00 0.00 3.55
852 3813 9.062524 TCAATAGTAAACAACATGCTAACTGTT 57.937 29.630 0.00 0.00 37.31 3.16
853 3814 9.677567 CAATAGTAAACAACATGCTAACTGTTT 57.322 29.630 0.00 12.25 42.83 2.83
854 3815 9.893305 AATAGTAAACAACATGCTAACTGTTTC 57.107 29.630 0.00 0.00 40.28 2.78
855 3816 7.568199 AGTAAACAACATGCTAACTGTTTCT 57.432 32.000 0.00 7.96 40.28 2.52
856 3817 8.671384 AGTAAACAACATGCTAACTGTTTCTA 57.329 30.769 0.00 0.00 40.28 2.10
857 3818 9.116067 AGTAAACAACATGCTAACTGTTTCTAA 57.884 29.630 0.00 0.00 40.28 2.10
858 3819 9.166126 GTAAACAACATGCTAACTGTTTCTAAC 57.834 33.333 0.00 4.74 40.28 2.34
859 3820 7.568199 AACAACATGCTAACTGTTTCTAACT 57.432 32.000 0.00 0.00 34.69 2.24
860 3821 7.568199 ACAACATGCTAACTGTTTCTAACTT 57.432 32.000 0.00 0.00 34.69 2.66
861 3822 7.996385 ACAACATGCTAACTGTTTCTAACTTT 58.004 30.769 0.00 0.00 34.69 2.66
862 3823 8.466798 ACAACATGCTAACTGTTTCTAACTTTT 58.533 29.630 0.00 0.00 34.69 2.27
863 3824 8.958043 CAACATGCTAACTGTTTCTAACTTTTC 58.042 33.333 0.00 0.00 34.69 2.29
864 3825 8.451908 ACATGCTAACTGTTTCTAACTTTTCT 57.548 30.769 0.00 0.00 0.00 2.52
865 3826 8.903820 ACATGCTAACTGTTTCTAACTTTTCTT 58.096 29.630 0.00 0.00 0.00 2.52
866 3827 9.387123 CATGCTAACTGTTTCTAACTTTTCTTC 57.613 33.333 0.00 0.00 0.00 2.87
867 3828 8.500753 TGCTAACTGTTTCTAACTTTTCTTCA 57.499 30.769 0.00 0.00 0.00 3.02
868 3829 9.120538 TGCTAACTGTTTCTAACTTTTCTTCAT 57.879 29.630 0.00 0.00 0.00 2.57
869 3830 9.952188 GCTAACTGTTTCTAACTTTTCTTCATT 57.048 29.630 0.00 0.00 0.00 2.57
880 3841 9.827411 CTAACTTTTCTTCATTTTACACTAGGC 57.173 33.333 0.00 0.00 0.00 3.93
881 3842 8.465273 AACTTTTCTTCATTTTACACTAGGCT 57.535 30.769 0.00 0.00 0.00 4.58
882 3843 9.569122 AACTTTTCTTCATTTTACACTAGGCTA 57.431 29.630 0.00 0.00 0.00 3.93
883 3844 9.220767 ACTTTTCTTCATTTTACACTAGGCTAG 57.779 33.333 19.83 19.83 0.00 3.42
884 3845 9.220767 CTTTTCTTCATTTTACACTAGGCTAGT 57.779 33.333 21.30 21.30 40.28 2.57
886 3847 9.649167 TTTCTTCATTTTACACTAGGCTAGTAC 57.351 33.333 25.82 0.00 37.23 2.73
887 3848 8.591114 TCTTCATTTTACACTAGGCTAGTACT 57.409 34.615 25.82 16.22 37.23 2.73
888 3849 8.467598 TCTTCATTTTACACTAGGCTAGTACTG 58.532 37.037 25.82 16.51 37.23 2.74
889 3850 7.713734 TCATTTTACACTAGGCTAGTACTGT 57.286 36.000 25.82 20.91 37.23 3.55
890 3851 8.812513 TCATTTTACACTAGGCTAGTACTGTA 57.187 34.615 25.82 19.96 37.23 2.74
891 3852 8.900781 TCATTTTACACTAGGCTAGTACTGTAG 58.099 37.037 25.82 15.09 37.23 2.74
892 3853 6.690194 TTTACACTAGGCTAGTACTGTAGC 57.310 41.667 25.82 7.41 44.14 3.58
893 3854 4.232188 ACACTAGGCTAGTACTGTAGCA 57.768 45.455 25.82 0.00 46.29 3.49
894 3855 3.946558 ACACTAGGCTAGTACTGTAGCAC 59.053 47.826 25.82 8.43 46.29 4.40
895 3856 3.315749 CACTAGGCTAGTACTGTAGCACC 59.684 52.174 25.82 3.54 46.29 5.01
896 3857 1.777941 AGGCTAGTACTGTAGCACCC 58.222 55.000 17.34 2.93 46.29 4.61
897 3858 0.384669 GGCTAGTACTGTAGCACCCG 59.615 60.000 17.34 0.00 46.29 5.28
898 3859 1.101331 GCTAGTACTGTAGCACCCGT 58.899 55.000 11.95 0.00 44.26 5.28
899 3860 1.065251 GCTAGTACTGTAGCACCCGTC 59.935 57.143 11.95 0.00 44.26 4.79
900 3861 2.641305 CTAGTACTGTAGCACCCGTCT 58.359 52.381 5.39 0.00 0.00 4.18
901 3862 1.920610 AGTACTGTAGCACCCGTCTT 58.079 50.000 0.00 0.00 0.00 3.01
902 3863 2.245582 AGTACTGTAGCACCCGTCTTT 58.754 47.619 0.00 0.00 0.00 2.52
903 3864 2.631545 AGTACTGTAGCACCCGTCTTTT 59.368 45.455 0.00 0.00 0.00 2.27
904 3865 2.165319 ACTGTAGCACCCGTCTTTTC 57.835 50.000 0.00 0.00 0.00 2.29
905 3866 1.692519 ACTGTAGCACCCGTCTTTTCT 59.307 47.619 0.00 0.00 0.00 2.52
906 3867 2.104281 ACTGTAGCACCCGTCTTTTCTT 59.896 45.455 0.00 0.00 0.00 2.52
907 3868 3.139077 CTGTAGCACCCGTCTTTTCTTT 58.861 45.455 0.00 0.00 0.00 2.52
908 3869 3.547746 TGTAGCACCCGTCTTTTCTTTT 58.452 40.909 0.00 0.00 0.00 2.27
909 3870 3.562557 TGTAGCACCCGTCTTTTCTTTTC 59.437 43.478 0.00 0.00 0.00 2.29
910 3871 2.932261 AGCACCCGTCTTTTCTTTTCT 58.068 42.857 0.00 0.00 0.00 2.52
911 3872 4.081322 AGCACCCGTCTTTTCTTTTCTA 57.919 40.909 0.00 0.00 0.00 2.10
912 3873 4.457466 AGCACCCGTCTTTTCTTTTCTAA 58.543 39.130 0.00 0.00 0.00 2.10
913 3874 4.515567 AGCACCCGTCTTTTCTTTTCTAAG 59.484 41.667 0.00 0.00 0.00 2.18
914 3875 4.275196 GCACCCGTCTTTTCTTTTCTAAGT 59.725 41.667 0.00 0.00 32.98 2.24
915 3876 5.220989 GCACCCGTCTTTTCTTTTCTAAGTT 60.221 40.000 0.00 0.00 32.98 2.66
916 3877 6.017687 GCACCCGTCTTTTCTTTTCTAAGTTA 60.018 38.462 0.00 0.00 32.98 2.24
917 3878 7.573627 CACCCGTCTTTTCTTTTCTAAGTTAG 58.426 38.462 3.29 3.29 32.98 2.34
918 3879 7.440255 CACCCGTCTTTTCTTTTCTAAGTTAGA 59.560 37.037 8.59 8.59 32.98 2.10
919 3880 7.656542 ACCCGTCTTTTCTTTTCTAAGTTAGAG 59.343 37.037 12.28 2.45 35.96 2.43
920 3881 7.117956 CCCGTCTTTTCTTTTCTAAGTTAGAGG 59.882 40.741 12.28 6.17 35.96 3.69
921 3882 7.871463 CCGTCTTTTCTTTTCTAAGTTAGAGGA 59.129 37.037 12.28 9.59 35.96 3.71
922 3883 9.425577 CGTCTTTTCTTTTCTAAGTTAGAGGAT 57.574 33.333 12.28 0.00 35.96 3.24
924 3885 9.945904 TCTTTTCTTTTCTAAGTTAGAGGATCC 57.054 33.333 12.28 2.48 35.96 3.36
925 3886 8.773404 TTTTCTTTTCTAAGTTAGAGGATCCG 57.227 34.615 12.28 1.38 35.96 4.18
926 3887 6.466885 TCTTTTCTAAGTTAGAGGATCCGG 57.533 41.667 12.28 0.00 35.96 5.14
927 3888 5.956563 TCTTTTCTAAGTTAGAGGATCCGGT 59.043 40.000 12.28 0.00 35.96 5.28
928 3889 6.439692 TCTTTTCTAAGTTAGAGGATCCGGTT 59.560 38.462 12.28 0.00 35.96 4.44
929 3890 5.848833 TTCTAAGTTAGAGGATCCGGTTC 57.151 43.478 12.28 1.67 35.96 3.62
930 3891 4.213513 TCTAAGTTAGAGGATCCGGTTCC 58.786 47.826 22.05 22.05 33.66 3.62
932 3893 3.117552 AGTTAGAGGATCCGGTTCCTT 57.882 47.619 30.43 22.15 46.35 3.36
933 3894 2.766828 AGTTAGAGGATCCGGTTCCTTG 59.233 50.000 30.43 0.00 46.35 3.61
934 3895 1.120530 TAGAGGATCCGGTTCCTTGC 58.879 55.000 30.43 20.31 46.35 4.01
935 3896 0.909610 AGAGGATCCGGTTCCTTGCA 60.910 55.000 30.43 0.00 46.35 4.08
936 3897 0.744771 GAGGATCCGGTTCCTTGCAC 60.745 60.000 30.43 16.67 46.35 4.57
937 3898 1.002624 GGATCCGGTTCCTTGCACA 60.003 57.895 22.23 0.00 32.68 4.57
938 3899 1.305930 GGATCCGGTTCCTTGCACAC 61.306 60.000 22.23 0.00 32.68 3.82
939 3900 1.635663 GATCCGGTTCCTTGCACACG 61.636 60.000 0.00 0.00 0.00 4.49
940 3901 4.025401 CCGGTTCCTTGCACACGC 62.025 66.667 0.00 0.00 39.24 5.34
941 3902 2.972505 CGGTTCCTTGCACACGCT 60.973 61.111 0.00 0.00 39.64 5.07
942 3903 2.639286 GGTTCCTTGCACACGCTG 59.361 61.111 0.00 0.00 39.64 5.18
943 3904 1.891919 GGTTCCTTGCACACGCTGA 60.892 57.895 0.00 0.00 39.64 4.26
944 3905 1.571460 GTTCCTTGCACACGCTGAG 59.429 57.895 0.00 0.00 39.64 3.35
945 3906 1.597854 TTCCTTGCACACGCTGAGG 60.598 57.895 0.00 0.00 41.05 3.86
946 3907 2.031012 CCTTGCACACGCTGAGGA 59.969 61.111 0.00 0.00 41.76 3.71
947 3908 2.320587 CCTTGCACACGCTGAGGAC 61.321 63.158 0.00 0.00 41.76 3.85
948 3909 1.301244 CTTGCACACGCTGAGGACT 60.301 57.895 0.00 0.00 39.64 3.85
949 3910 0.038251 CTTGCACACGCTGAGGACTA 60.038 55.000 0.00 0.00 39.64 2.59
950 3911 0.038251 TTGCACACGCTGAGGACTAG 60.038 55.000 0.00 0.00 39.64 2.57
951 3912 1.153745 GCACACGCTGAGGACTAGG 60.154 63.158 0.00 0.00 34.30 3.02
952 3913 1.513158 CACACGCTGAGGACTAGGG 59.487 63.158 0.00 0.00 0.00 3.53
953 3914 2.352032 ACACGCTGAGGACTAGGGC 61.352 63.158 0.00 0.00 0.00 5.19
954 3915 2.760385 ACGCTGAGGACTAGGGCC 60.760 66.667 0.00 0.00 0.00 5.80
955 3916 3.541713 CGCTGAGGACTAGGGCCC 61.542 72.222 16.46 16.46 0.00 5.80
956 3917 2.041405 GCTGAGGACTAGGGCCCT 60.041 66.667 31.35 31.35 35.02 5.19
957 3918 2.439104 GCTGAGGACTAGGGCCCTG 61.439 68.421 35.81 25.05 31.84 4.45
958 3919 1.311403 CTGAGGACTAGGGCCCTGA 59.689 63.158 35.81 17.04 31.84 3.86
959 3920 1.001760 TGAGGACTAGGGCCCTGAC 59.998 63.158 35.81 23.14 31.84 3.51
960 3921 1.762858 GAGGACTAGGGCCCTGACC 60.763 68.421 35.81 30.01 31.84 4.02
961 3922 2.040606 GGACTAGGGCCCTGACCA 59.959 66.667 35.81 13.91 29.21 4.02
962 3923 2.066999 GGACTAGGGCCCTGACCAG 61.067 68.421 35.81 25.43 29.21 4.00
963 3924 1.001760 GACTAGGGCCCTGACCAGA 59.998 63.158 35.81 12.61 29.21 3.86
964 3925 0.399233 GACTAGGGCCCTGACCAGAT 60.399 60.000 35.81 13.65 29.21 2.90
965 3926 0.399233 ACTAGGGCCCTGACCAGATC 60.399 60.000 35.81 0.00 29.21 2.75
966 3927 1.074471 TAGGGCCCTGACCAGATCC 60.074 63.158 35.81 0.00 29.21 3.36
967 3928 2.621672 TAGGGCCCTGACCAGATCCC 62.622 65.000 35.81 14.52 38.91 3.85
968 3929 3.866582 GGCCCTGACCAGATCCCG 61.867 72.222 0.00 0.00 0.00 5.14
969 3930 4.554036 GCCCTGACCAGATCCCGC 62.554 72.222 0.00 0.00 0.00 6.13
970 3931 4.227134 CCCTGACCAGATCCCGCG 62.227 72.222 0.00 0.00 0.00 6.46
971 3932 4.899239 CCTGACCAGATCCCGCGC 62.899 72.222 0.00 0.00 0.00 6.86
972 3933 3.842923 CTGACCAGATCCCGCGCT 61.843 66.667 5.56 0.00 0.00 5.92
973 3934 4.147449 TGACCAGATCCCGCGCTG 62.147 66.667 5.56 1.90 0.00 5.18
1026 3987 2.756283 CCGTCCTCCGAAGAGCCT 60.756 66.667 0.00 0.00 38.96 4.58
1102 4063 1.487976 AGGTCCTCGTCGTCATAGGTA 59.512 52.381 0.00 0.00 0.00 3.08
1110 4071 0.744057 TCGTCATAGGTACGTGCGGA 60.744 55.000 0.00 0.00 41.08 5.54
1123 4084 2.527875 GCGGATGGATCCCCTCCT 60.528 66.667 21.95 0.00 45.21 3.69
1124 4085 2.588201 GCGGATGGATCCCCTCCTC 61.588 68.421 21.95 14.18 45.21 3.71
1125 4086 1.915769 CGGATGGATCCCCTCCTCC 60.916 68.421 21.95 13.66 45.21 4.30
1126 4087 1.540118 GGATGGATCCCCTCCTCCC 60.540 68.421 18.89 3.58 45.21 4.30
1128 4089 0.104197 GATGGATCCCCTCCTCCCTT 60.104 60.000 9.90 0.00 45.21 3.95
1132 4093 2.271493 GATCCCCTCCTCCCTTCCCA 62.271 65.000 0.00 0.00 0.00 4.37
1140 4101 3.607299 TCCCTTCCCACCCTCCGA 61.607 66.667 0.00 0.00 0.00 4.55
1141 4102 2.366972 CCCTTCCCACCCTCCGAT 60.367 66.667 0.00 0.00 0.00 4.18
1143 4104 1.689233 CCTTCCCACCCTCCGATGA 60.689 63.158 0.00 0.00 0.00 2.92
1153 4114 4.916293 TCCGATGATGCCGCTGCC 62.916 66.667 0.00 0.00 36.33 4.85
1174 4135 0.859232 CTTTGCTTGCTTGCTTGCTG 59.141 50.000 10.35 0.00 0.00 4.41
1175 4136 0.460722 TTTGCTTGCTTGCTTGCTGA 59.539 45.000 10.35 0.27 0.00 4.26
1176 4137 0.031585 TTGCTTGCTTGCTTGCTGAG 59.968 50.000 10.35 3.19 0.00 3.35
1189 4150 4.494350 CTTGCTGAGCTGTTGTTATTGT 57.506 40.909 5.83 0.00 0.00 2.71
1202 4163 3.288964 TGTTATTGTGGGTTCGGTTTGT 58.711 40.909 0.00 0.00 0.00 2.83
1284 4245 0.179111 GCCGACGAATCCATGTCAGA 60.179 55.000 0.00 0.00 34.78 3.27
1285 4246 1.560923 CCGACGAATCCATGTCAGAC 58.439 55.000 0.00 0.00 34.78 3.51
1286 4247 1.135112 CCGACGAATCCATGTCAGACA 60.135 52.381 5.50 5.50 34.78 3.41
1287 4248 2.188524 CGACGAATCCATGTCAGACAG 58.811 52.381 9.64 1.53 34.78 3.51
1288 4249 2.416027 CGACGAATCCATGTCAGACAGT 60.416 50.000 9.64 0.00 34.78 3.55
1289 4250 2.926200 GACGAATCCATGTCAGACAGTG 59.074 50.000 9.64 7.55 35.20 3.66
1291 4252 2.676176 CGAATCCATGTCAGACAGTGCT 60.676 50.000 9.64 0.00 0.00 4.40
1293 4254 0.610174 TCCATGTCAGACAGTGCTCC 59.390 55.000 9.64 0.00 0.00 4.70
1294 4255 0.612229 CCATGTCAGACAGTGCTCCT 59.388 55.000 9.64 0.00 0.00 3.69
1297 4261 1.709578 TGTCAGACAGTGCTCCTCTT 58.290 50.000 0.00 0.00 0.00 2.85
1310 4274 1.996291 CTCCTCTTCCCCTTTTCCCTT 59.004 52.381 0.00 0.00 0.00 3.95
1322 4286 0.481607 TTTCCCTTCCCATCCCCCTT 60.482 55.000 0.00 0.00 0.00 3.95
1326 4555 0.709992 CCTTCCCATCCCCCTTTTGA 59.290 55.000 0.00 0.00 0.00 2.69
1334 4563 4.095946 CCATCCCCCTTTTGATTCAGAAA 58.904 43.478 0.00 0.00 0.00 2.52
1336 4565 5.190330 CCATCCCCCTTTTGATTCAGAAATT 59.810 40.000 0.00 0.00 0.00 1.82
1337 4566 6.343703 CATCCCCCTTTTGATTCAGAAATTC 58.656 40.000 0.00 0.00 0.00 2.17
1338 4567 5.401750 TCCCCCTTTTGATTCAGAAATTCA 58.598 37.500 0.00 0.00 0.00 2.57
1339 4568 5.481473 TCCCCCTTTTGATTCAGAAATTCAG 59.519 40.000 0.00 0.00 0.00 3.02
1341 4570 6.014327 CCCCCTTTTGATTCAGAAATTCAGAA 60.014 38.462 3.36 3.36 0.00 3.02
1342 4571 6.870439 CCCCTTTTGATTCAGAAATTCAGAAC 59.130 38.462 2.94 0.00 0.00 3.01
1352 4586 9.829507 ATTCAGAAATTCAGAACTAGATACAGG 57.170 33.333 2.94 0.00 0.00 4.00
1367 4605 1.449246 CAGGTGAGCAGCTACTGGC 60.449 63.158 11.62 0.00 37.39 4.85
1472 4718 2.414994 ACAGTGGAGATTGGATGCAG 57.585 50.000 0.00 0.00 0.00 4.41
1476 4722 0.394762 TGGAGATTGGATGCAGGTGC 60.395 55.000 0.00 0.00 42.50 5.01
1477 4723 0.106819 GGAGATTGGATGCAGGTGCT 60.107 55.000 3.18 0.00 42.66 4.40
1508 4754 2.624838 AGATTTCCTGTGTTGTTGCTGG 59.375 45.455 0.00 0.00 0.00 4.85
1513 4759 1.392589 CTGTGTTGTTGCTGGAAGGT 58.607 50.000 0.00 0.00 0.00 3.50
1518 4764 1.134848 GTTGTTGCTGGAAGGTTTGCA 60.135 47.619 0.00 0.00 0.00 4.08
1532 4778 3.899981 TTGCATCTGCGCGGAGGTT 62.900 57.895 29.37 12.84 45.83 3.50
1536 4782 2.650116 ATCTGCGCGGAGGTTCAGT 61.650 57.895 27.80 2.31 0.00 3.41
1537 4783 2.842394 ATCTGCGCGGAGGTTCAGTG 62.842 60.000 27.80 0.00 0.00 3.66
1540 4786 3.114616 CGCGGAGGTTCAGTGCAG 61.115 66.667 0.00 0.00 0.00 4.41
1541 4787 3.426568 GCGGAGGTTCAGTGCAGC 61.427 66.667 0.00 0.00 0.00 5.25
1566 4812 1.077787 GTCACCGGAATGGATGGCA 60.078 57.895 9.46 0.00 42.00 4.92
1569 4815 1.076777 ACCGGAATGGATGGCAAGG 60.077 57.895 9.46 0.00 42.00 3.61
1591 4837 3.507622 GTGGGAAAATTTAGCAGCAGTCT 59.492 43.478 0.00 0.00 0.00 3.24
1602 4848 0.040958 CAGCAGTCTGTTTCCGTTGC 60.041 55.000 0.93 0.00 35.61 4.17
1603 4849 1.166531 AGCAGTCTGTTTCCGTTGCC 61.167 55.000 0.93 0.00 32.21 4.52
1631 4877 2.985896 TGTTGGATGGCTAGTTACTGC 58.014 47.619 0.00 0.00 0.00 4.40
1637 4883 4.163268 TGGATGGCTAGTTACTGCATAACA 59.837 41.667 16.29 6.48 45.00 2.41
1692 4938 2.251600 CCAGTTGGTGCTCAGCTTC 58.748 57.895 0.00 0.00 34.60 3.86
1693 4939 0.250640 CCAGTTGGTGCTCAGCTTCT 60.251 55.000 0.00 0.00 34.60 2.85
1695 4941 1.952296 CAGTTGGTGCTCAGCTTCTTT 59.048 47.619 0.00 0.00 34.60 2.52
1696 4942 1.952296 AGTTGGTGCTCAGCTTCTTTG 59.048 47.619 0.00 0.00 32.86 2.77
1697 4943 1.000938 GTTGGTGCTCAGCTTCTTTGG 60.001 52.381 0.00 0.00 0.00 3.28
1698 4944 1.174712 TGGTGCTCAGCTTCTTTGGC 61.175 55.000 0.00 0.00 0.00 4.52
1699 4945 1.174712 GGTGCTCAGCTTCTTTGGCA 61.175 55.000 0.00 0.00 0.00 4.92
1700 4946 0.670162 GTGCTCAGCTTCTTTGGCAA 59.330 50.000 0.00 0.00 0.00 4.52
1701 4947 1.271656 GTGCTCAGCTTCTTTGGCAAT 59.728 47.619 0.00 0.00 0.00 3.56
1702 4948 1.271379 TGCTCAGCTTCTTTGGCAATG 59.729 47.619 0.00 3.33 0.00 2.82
1703 4949 1.542915 GCTCAGCTTCTTTGGCAATGA 59.457 47.619 11.38 11.38 0.00 2.57
1704 4950 2.670509 GCTCAGCTTCTTTGGCAATGAC 60.671 50.000 14.62 5.63 0.00 3.06
1705 4951 2.555325 CTCAGCTTCTTTGGCAATGACA 59.445 45.455 14.62 6.58 0.00 3.58
1706 4952 3.159472 TCAGCTTCTTTGGCAATGACAT 58.841 40.909 14.62 2.42 0.00 3.06
1707 4953 3.057104 TCAGCTTCTTTGGCAATGACATG 60.057 43.478 14.62 12.98 0.00 3.21
1714 4960 5.015515 TCTTTGGCAATGACATGTTGGATA 58.984 37.500 11.38 0.00 0.00 2.59
1734 4980 2.417719 ACTCTCAAGCTAACGCCTTTG 58.582 47.619 0.00 0.00 36.60 2.77
1746 4992 1.657181 GCCTTTGTTTGTCGGTGCG 60.657 57.895 0.00 0.00 0.00 5.34
1763 5009 1.787847 CGCACCTAACAGCTTTCCG 59.212 57.895 0.00 0.00 0.00 4.30
1793 5039 0.902531 CTTGGACTCGGTACCATGGT 59.097 55.000 23.55 23.55 36.02 3.55
1823 5069 0.596083 GCCTCCACATCGATCTCGTG 60.596 60.000 7.25 7.25 40.80 4.35
1879 5144 2.886859 CACGATGCCGAGGACATAC 58.113 57.895 0.00 0.00 39.50 2.39
1895 5160 4.037446 GGACATACTCTCTGTGGATCAGTC 59.963 50.000 0.00 0.00 43.97 3.51
1902 5168 4.923415 TCTCTGTGGATCAGTCTAGTTCA 58.077 43.478 0.00 0.00 43.97 3.18
1927 5193 7.854916 CAGTTTTTCTGATCAACTTCTCTGAAC 59.145 37.037 0.00 0.00 46.27 3.18
1986 5260 1.549170 TCCGTTCCTTACCAAGAGCTC 59.451 52.381 5.27 5.27 0.00 4.09
2011 5285 4.054671 CTCTTTCAGGAGTTGACAGTGTC 58.945 47.826 16.68 16.68 35.53 3.67
2046 5320 2.676839 CAGCTCTGGTGACTTATGCTTG 59.323 50.000 0.00 0.00 32.22 4.01
2053 5327 6.573434 TCTGGTGACTTATGCTTGTATACAG 58.427 40.000 5.56 2.17 0.00 2.74
2149 5425 1.252175 TATGCCACCGTTTGTGCATT 58.748 45.000 12.29 2.78 44.01 3.56
2150 5426 1.252175 ATGCCACCGTTTGTGCATTA 58.748 45.000 0.00 0.00 44.01 1.90
2151 5427 0.312416 TGCCACCGTTTGTGCATTAC 59.688 50.000 0.00 0.00 44.01 1.89
2168 5640 8.976471 TGTGCATTACAAACAATTTTACTCATG 58.024 29.630 0.00 0.00 36.06 3.07
2280 5752 4.020218 CCATTCCTGTGAGTCCTGTCTTAA 60.020 45.833 0.00 0.00 0.00 1.85
2288 5760 6.049149 TGTGAGTCCTGTCTTAAGTTTCTTG 58.951 40.000 1.63 0.00 0.00 3.02
2328 5800 4.334552 TGCATCCATTTTCTTGTAGCAGA 58.665 39.130 0.00 0.00 0.00 4.26
2356 5831 5.554636 CATCGATAAGCTTCAGTGTTTGAC 58.445 41.667 0.00 0.00 34.94 3.18
2371 5846 7.602644 TCAGTGTTTGACATTAGGAAGTCATAC 59.397 37.037 0.00 0.00 43.57 2.39
2432 5907 7.711772 TGAATTCAACAATCCAATCCATATTGC 59.288 33.333 5.45 0.00 41.06 3.56
2437 5912 4.831155 ACAATCCAATCCATATTGCTCCAG 59.169 41.667 0.00 0.00 41.06 3.86
2461 5936 0.905357 TAAGAGTTCTCTGCCCTGGC 59.095 55.000 0.00 0.00 42.35 4.85
2485 5960 5.908341 TGTATCATCACGGCTAAACATGTA 58.092 37.500 0.00 0.00 0.00 2.29
2497 5972 6.183360 CGGCTAAACATGTAGAACTAAATGCA 60.183 38.462 0.00 0.00 34.81 3.96
2498 5973 7.467267 CGGCTAAACATGTAGAACTAAATGCAT 60.467 37.037 0.00 0.00 34.81 3.96
2499 5974 7.645340 GGCTAAACATGTAGAACTAAATGCATG 59.355 37.037 0.00 9.21 34.81 4.06
2500 5975 8.184192 GCTAAACATGTAGAACTAAATGCATGT 58.816 33.333 0.00 0.00 45.71 3.21
2504 5979 8.792830 ACATGTAGAACTAAATGCATGTTACT 57.207 30.769 0.00 3.32 42.59 2.24
2505 5980 8.883731 ACATGTAGAACTAAATGCATGTTACTC 58.116 33.333 0.00 0.00 42.59 2.59
2506 5981 7.520119 TGTAGAACTAAATGCATGTTACTCG 57.480 36.000 0.00 0.00 0.00 4.18
2507 5982 5.470845 AGAACTAAATGCATGTTACTCGC 57.529 39.130 0.00 0.00 0.00 5.03
2510 5985 5.221891 ACTAAATGCATGTTACTCGCTTG 57.778 39.130 0.00 0.00 0.00 4.01
2547 6769 9.658799 TTGATATCTCTTTATGGCTTAGTATGC 57.341 33.333 3.98 0.00 0.00 3.14
2557 6779 8.534333 TTATGGCTTAGTATGCTATTTCTTCG 57.466 34.615 11.35 0.00 33.74 3.79
2655 6877 6.485313 TGTGTAGGTTTTTGACAGTTATGGAG 59.515 38.462 0.00 0.00 0.00 3.86
2663 6885 2.271800 GACAGTTATGGAGTTGGAGCG 58.728 52.381 0.00 0.00 0.00 5.03
2677 6899 0.434628 GGAGCGCGAAAAACATTTGC 59.565 50.000 12.10 0.00 0.00 3.68
2739 6961 3.463048 AGGGCATCTTCAATGGAAAGT 57.537 42.857 0.00 0.00 31.35 2.66
2790 7012 8.413899 AGTAAATCTCGTAGAATTTGAGAAGC 57.586 34.615 5.22 0.00 41.68 3.86
2827 7049 2.051334 TACAATGGCAGCCGCTAATT 57.949 45.000 7.03 0.00 38.60 1.40
2829 7051 1.550072 ACAATGGCAGCCGCTAATTTT 59.450 42.857 7.03 0.00 38.60 1.82
2833 7055 0.179137 GGCAGCCGCTAATTTTGGAC 60.179 55.000 0.00 0.00 38.60 4.02
2843 7065 5.007332 CCGCTAATTTTGGACGCTAATAAGT 59.993 40.000 0.00 0.00 0.00 2.24
2924 7147 2.515947 TTTTTGCGCCGATGCCGTAC 62.516 55.000 4.18 0.00 0.00 3.67
2976 7199 1.647346 TCGATCGGGAAACAAATCCG 58.353 50.000 16.41 0.00 44.59 4.18
3065 7289 4.095483 CCACTTGTCAATCTGCTGGATTAC 59.905 45.833 5.45 5.83 42.20 1.89
3252 7486 3.244215 TGTCAACTGGTGATTCTCTGGAC 60.244 47.826 0.00 0.00 38.90 4.02
3297 7531 4.551603 GCAATACTGAGCAATGAAGCTACG 60.552 45.833 0.00 0.00 46.75 3.51
3330 7564 2.231235 GGAGGTACATGCTTTTGGTTGG 59.769 50.000 0.00 0.00 0.00 3.77
3371 7605 4.545610 ACAAACATGAGCAAATAACACGG 58.454 39.130 0.00 0.00 0.00 4.94
3447 7681 8.809468 AATTTTGAGAGGGTACTTATTCTTCC 57.191 34.615 0.00 0.00 0.00 3.46
3450 7684 4.401519 TGAGAGGGTACTTATTCTTCCGTG 59.598 45.833 0.00 0.00 0.00 4.94
3486 7720 8.788325 TTTTTATTAGAGCCTTTGAGTAGGAC 57.212 34.615 0.00 0.00 37.50 3.85
3489 7723 0.246635 GAGCCTTTGAGTAGGACGCA 59.753 55.000 0.00 0.00 37.50 5.24
3494 7728 2.101582 CCTTTGAGTAGGACGCAGCTAT 59.898 50.000 0.00 0.00 37.50 2.97
3506 7740 1.524621 CAGCTATTCTGCACCCGGG 60.525 63.158 22.25 22.25 35.78 5.73
3507 7741 2.902343 GCTATTCTGCACCCGGGC 60.902 66.667 24.08 8.36 0.00 6.13
3508 7742 2.911143 CTATTCTGCACCCGGGCT 59.089 61.111 24.08 4.79 34.04 5.19
3509 7743 1.227674 CTATTCTGCACCCGGGCTC 60.228 63.158 24.08 13.62 34.04 4.70
3510 7744 1.971505 CTATTCTGCACCCGGGCTCA 61.972 60.000 24.08 17.97 34.04 4.26
3511 7745 1.344953 TATTCTGCACCCGGGCTCAT 61.345 55.000 24.08 6.92 34.04 2.90
3512 7746 2.615227 ATTCTGCACCCGGGCTCATC 62.615 60.000 24.08 5.69 34.04 2.92
3514 7748 2.364973 TGCACCCGGGCTCATCTA 60.365 61.111 24.08 0.00 34.04 1.98
3515 7749 2.109181 GCACCCGGGCTCATCTAC 59.891 66.667 24.08 0.00 0.00 2.59
3517 7751 1.144057 CACCCGGGCTCATCTACAC 59.856 63.158 24.08 0.00 0.00 2.90
3518 7752 2.064581 ACCCGGGCTCATCTACACC 61.065 63.158 24.08 0.00 0.00 4.16
3519 7753 2.808206 CCCGGGCTCATCTACACCC 61.808 68.421 8.08 0.00 39.12 4.61
3522 7756 1.760875 GGGCTCATCTACACCCGGA 60.761 63.158 0.73 0.00 31.32 5.14
3582 8512 3.307674 GCAACGAAGATGTTCATTTGCA 58.692 40.909 23.55 0.00 44.06 4.08
3667 8598 2.028476 TGGGGTGTGAGAACACTATTCG 60.028 50.000 8.73 0.00 46.07 3.34
3672 8603 4.380655 GGTGTGAGAACACTATTCGTAGCT 60.381 45.833 8.73 0.00 46.07 3.32
3707 8644 5.048083 GCAAACTCCTCATATGTCCAAACAA 60.048 40.000 1.90 0.00 39.30 2.83
3748 8685 1.011463 GCGCACATGAGCATCTTCG 60.011 57.895 15.56 0.00 40.65 3.79
3759 8696 3.119743 TGAGCATCTTCGATGCCAAAAAG 60.120 43.478 21.37 0.00 45.59 2.27
3766 8703 4.338118 TCTTCGATGCCAAAAAGTTTCAGT 59.662 37.500 0.00 0.00 0.00 3.41
3974 8935 5.877012 TGTTACTTTTCTGCATCCATCTCTC 59.123 40.000 0.00 0.00 0.00 3.20
4045 9125 1.304052 TCGTTTGCCATTCCAGGGG 60.304 57.895 0.00 0.00 0.00 4.79
4249 9329 1.833630 TCTGATCTCTGAACGCCCAAT 59.166 47.619 0.00 0.00 0.00 3.16
4250 9330 1.938577 CTGATCTCTGAACGCCCAATG 59.061 52.381 0.00 0.00 0.00 2.82
4257 9337 4.722700 AACGCCCAATGCTCCGCT 62.723 61.111 0.00 0.00 38.05 5.52
4296 9382 8.642432 CAAATCGAGGGAGCCTGAATATATATA 58.358 37.037 0.00 0.00 31.76 0.86
4297 9383 8.964533 AATCGAGGGAGCCTGAATATATATAT 57.035 34.615 0.00 0.00 31.76 0.86
4298 9384 8.964533 ATCGAGGGAGCCTGAATATATATATT 57.035 34.615 16.28 16.28 32.79 1.28
4324 9410 4.108570 TGGATGTATAGTGTTTCCTGGGT 58.891 43.478 0.00 0.00 0.00 4.51
4341 9427 2.496111 GGGTGGTTTCACACACGATTA 58.504 47.619 0.00 0.00 46.18 1.75
4351 9437 7.064134 GGTTTCACACACGATTATACATTCTCA 59.936 37.037 0.00 0.00 0.00 3.27
4391 9477 1.555075 TCTTGGCGATTACTTGGAGCT 59.445 47.619 0.00 0.00 0.00 4.09
4496 9583 1.560505 AAATGATGGGCACTGGAACC 58.439 50.000 0.00 0.00 0.00 3.62
4497 9584 0.706433 AATGATGGGCACTGGAACCT 59.294 50.000 0.00 0.00 0.00 3.50
4501 9588 2.034221 GGGCACTGGAACCTCCAC 59.966 66.667 0.00 0.00 42.67 4.02
4510 9597 0.107654 GGAACCTCCACGGATTCAGG 60.108 60.000 2.68 0.00 36.28 3.86
4513 9600 1.141881 CCTCCACGGATTCAGGACG 59.858 63.158 0.00 0.00 33.16 4.79
4525 9612 0.541392 TCAGGACGATGGTTGATGGG 59.459 55.000 0.00 0.00 0.00 4.00
4594 9682 5.359009 CAGTGAGCAATGAATACTTCCCAAT 59.641 40.000 0.00 0.00 0.00 3.16
4618 9706 3.502920 CAGTGAGTAGTAAAGGCACTCG 58.497 50.000 0.00 0.00 41.29 4.18
4623 9711 4.748102 TGAGTAGTAAAGGCACTCGTTTTG 59.252 41.667 0.00 0.00 41.29 2.44
4654 9742 5.642491 AGCTGTGCTATATGTATGCTGAATG 59.358 40.000 0.00 0.00 36.99 2.67
4728 9816 2.898738 CACGGGCTCAGCTGATCT 59.101 61.111 18.63 0.00 0.00 2.75
4742 9830 2.092212 GCTGATCTTGAAATCCTCCCCA 60.092 50.000 0.00 0.00 0.00 4.96
4827 9915 1.408969 AAACAATCCAAGGGCGTTGT 58.591 45.000 17.64 0.00 34.49 3.32
4830 9918 1.247567 CAATCCAAGGGCGTTGTCTT 58.752 50.000 17.64 8.41 33.87 3.01
4850 9938 4.697828 TCTTATTAATTGCAACGACAGGCA 59.302 37.500 0.00 0.00 38.46 4.75
5004 10096 3.210358 TCAAATTTTGAATCCGACGGC 57.790 42.857 9.66 0.00 36.59 5.68
5016 10108 2.084681 CGACGGCGTACAACTCCAC 61.085 63.158 14.74 0.00 0.00 4.02
5017 10109 1.288127 GACGGCGTACAACTCCACT 59.712 57.895 14.74 0.00 0.00 4.00
5034 10126 2.026356 CCACTACCCATGAACATCCACA 60.026 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.771927 CCTTCATTAAGGCATTAATCAGGAT 57.228 36.000 23.02 0.88 45.78 3.24
109 3056 1.871080 CCACAGGACAACAGTCTGTC 58.129 55.000 5.82 7.12 44.21 3.51
110 3057 0.179045 GCCACAGGACAACAGTCTGT 60.179 55.000 0.00 0.00 32.81 3.41
111 3058 1.224069 CGCCACAGGACAACAGTCTG 61.224 60.000 0.00 0.00 32.81 3.51
260 3219 2.201022 ACCTCAACGCTCACGACCT 61.201 57.895 0.00 0.00 43.93 3.85
282 3241 3.798202 ACGCAAAATTAGAGAGCCCTAG 58.202 45.455 0.00 0.00 0.00 3.02
288 3247 4.394795 CGTCCAAACGCAAAATTAGAGAG 58.605 43.478 0.00 0.00 42.82 3.20
357 3316 1.744456 CGCTATTCCGGTGGCCTTTTA 60.744 52.381 3.32 0.00 0.00 1.52
372 3332 2.444140 ACCTTCTCGGGCCGCTAT 60.444 61.111 23.83 0.00 36.97 2.97
373 3333 3.145551 GACCTTCTCGGGCCGCTA 61.146 66.667 23.83 8.74 33.11 4.26
483 3444 5.104360 TGTCCTCTCAGGCTATTAGCATTTT 60.104 40.000 17.11 0.00 44.75 1.82
557 3518 3.954258 CGAGGGCCCTCATCTTTATTTTT 59.046 43.478 43.40 11.58 42.86 1.94
558 3519 3.555966 CGAGGGCCCTCATCTTTATTTT 58.444 45.455 43.40 12.07 42.86 1.82
559 3520 2.158608 CCGAGGGCCCTCATCTTTATTT 60.159 50.000 43.40 12.30 42.86 1.40
560 3521 1.421646 CCGAGGGCCCTCATCTTTATT 59.578 52.381 43.40 12.89 42.86 1.40
561 3522 1.059913 CCGAGGGCCCTCATCTTTAT 58.940 55.000 43.40 13.72 42.86 1.40
562 3523 0.031515 TCCGAGGGCCCTCATCTTTA 60.032 55.000 43.40 22.78 42.86 1.85
563 3524 1.306997 TCCGAGGGCCCTCATCTTT 60.307 57.895 43.40 15.38 42.86 2.52
564 3525 2.066999 GTCCGAGGGCCCTCATCTT 61.067 63.158 43.40 16.21 42.86 2.40
565 3526 2.444895 GTCCGAGGGCCCTCATCT 60.445 66.667 43.40 17.05 42.86 2.90
566 3527 0.759436 TAAGTCCGAGGGCCCTCATC 60.759 60.000 43.40 32.25 42.86 2.92
567 3528 0.760945 CTAAGTCCGAGGGCCCTCAT 60.761 60.000 43.40 27.65 42.86 2.90
568 3529 1.381327 CTAAGTCCGAGGGCCCTCA 60.381 63.158 43.40 27.76 42.86 3.86
569 3530 2.134933 CCTAAGTCCGAGGGCCCTC 61.135 68.421 38.24 38.24 39.55 4.30
570 3531 2.041819 CCTAAGTCCGAGGGCCCT 60.042 66.667 29.18 29.18 0.00 5.19
571 3532 2.042230 TCCTAAGTCCGAGGGCCC 60.042 66.667 16.46 16.46 34.56 5.80
572 3533 2.134933 CCTCCTAAGTCCGAGGGCC 61.135 68.421 0.00 0.00 41.79 5.80
573 3534 2.798364 GCCTCCTAAGTCCGAGGGC 61.798 68.421 5.32 0.00 45.03 5.19
574 3535 2.134933 GGCCTCCTAAGTCCGAGGG 61.135 68.421 0.00 0.00 45.03 4.30
576 3537 1.075896 AGGGCCTCCTAAGTCCGAG 60.076 63.158 0.00 0.00 42.75 4.63
577 3538 1.381327 CAGGGCCTCCTAAGTCCGA 60.381 63.158 0.95 0.00 42.67 4.55
578 3539 1.686110 ACAGGGCCTCCTAAGTCCG 60.686 63.158 0.95 0.00 42.67 4.79
579 3540 1.908483 CACAGGGCCTCCTAAGTCC 59.092 63.158 0.95 0.00 42.67 3.85
580 3541 1.222113 GCACAGGGCCTCCTAAGTC 59.778 63.158 0.95 0.00 42.67 3.01
581 3542 3.404773 GCACAGGGCCTCCTAAGT 58.595 61.111 0.95 0.00 42.67 2.24
591 3552 1.852157 ATAGGTGTGGTGGCACAGGG 61.852 60.000 20.82 0.00 41.80 4.45
592 3553 0.038166 AATAGGTGTGGTGGCACAGG 59.962 55.000 20.82 0.00 41.80 4.00
593 3554 1.167851 CAATAGGTGTGGTGGCACAG 58.832 55.000 20.82 0.00 41.80 3.66
594 3555 0.893270 GCAATAGGTGTGGTGGCACA 60.893 55.000 20.82 2.61 40.89 4.57
595 3556 0.893270 TGCAATAGGTGTGGTGGCAC 60.893 55.000 9.70 9.70 38.56 5.01
596 3557 0.893270 GTGCAATAGGTGTGGTGGCA 60.893 55.000 0.00 0.00 0.00 4.92
597 3558 0.893270 TGTGCAATAGGTGTGGTGGC 60.893 55.000 0.00 0.00 0.00 5.01
598 3559 1.473677 CATGTGCAATAGGTGTGGTGG 59.526 52.381 0.00 0.00 0.00 4.61
599 3560 1.473677 CCATGTGCAATAGGTGTGGTG 59.526 52.381 0.00 0.00 0.00 4.17
600 3561 1.354031 TCCATGTGCAATAGGTGTGGT 59.646 47.619 0.00 0.00 0.00 4.16
601 3562 2.127271 TCCATGTGCAATAGGTGTGG 57.873 50.000 0.00 0.00 0.00 4.17
602 3563 3.367292 GGTTTCCATGTGCAATAGGTGTG 60.367 47.826 0.00 0.00 0.00 3.82
603 3564 2.825532 GGTTTCCATGTGCAATAGGTGT 59.174 45.455 0.00 0.00 0.00 4.16
604 3565 2.159393 CGGTTTCCATGTGCAATAGGTG 60.159 50.000 0.00 0.00 0.00 4.00
605 3566 2.091541 CGGTTTCCATGTGCAATAGGT 58.908 47.619 0.00 0.00 0.00 3.08
606 3567 1.405105 CCGGTTTCCATGTGCAATAGG 59.595 52.381 0.00 0.00 0.00 2.57
607 3568 2.364632 TCCGGTTTCCATGTGCAATAG 58.635 47.619 0.00 0.00 0.00 1.73
608 3569 2.498644 TCCGGTTTCCATGTGCAATA 57.501 45.000 0.00 0.00 0.00 1.90
609 3570 1.750778 GATCCGGTTTCCATGTGCAAT 59.249 47.619 0.00 0.00 0.00 3.56
610 3571 1.173043 GATCCGGTTTCCATGTGCAA 58.827 50.000 0.00 0.00 0.00 4.08
611 3572 0.679640 GGATCCGGTTTCCATGTGCA 60.680 55.000 17.81 0.00 33.21 4.57
612 3573 0.394352 AGGATCCGGTTTCCATGTGC 60.394 55.000 22.60 1.38 35.59 4.57
613 3574 1.210478 AGAGGATCCGGTTTCCATGTG 59.790 52.381 22.60 0.00 35.59 3.21
614 3575 1.584724 AGAGGATCCGGTTTCCATGT 58.415 50.000 22.60 7.35 35.59 3.21
615 3576 3.118408 TGTTAGAGGATCCGGTTTCCATG 60.118 47.826 22.60 0.00 35.59 3.66
616 3577 3.112263 TGTTAGAGGATCCGGTTTCCAT 58.888 45.455 22.60 15.13 35.59 3.41
617 3578 2.542550 TGTTAGAGGATCCGGTTTCCA 58.457 47.619 22.60 5.18 35.59 3.53
618 3579 3.840124 ATGTTAGAGGATCCGGTTTCC 57.160 47.619 15.73 15.73 33.66 3.13
619 3580 5.068723 TCTGTATGTTAGAGGATCCGGTTTC 59.931 44.000 5.98 0.00 33.66 2.78
620 3581 4.960469 TCTGTATGTTAGAGGATCCGGTTT 59.040 41.667 5.98 0.00 33.66 3.27
621 3582 4.543689 TCTGTATGTTAGAGGATCCGGTT 58.456 43.478 5.98 0.00 33.66 4.44
622 3583 4.180377 TCTGTATGTTAGAGGATCCGGT 57.820 45.455 5.98 0.00 33.66 5.28
623 3584 5.302059 TCTTTCTGTATGTTAGAGGATCCGG 59.698 44.000 5.98 0.00 33.66 5.14
624 3585 6.392625 TCTTTCTGTATGTTAGAGGATCCG 57.607 41.667 5.98 0.00 33.66 4.18
625 3586 9.620259 AATTTCTTTCTGTATGTTAGAGGATCC 57.380 33.333 2.48 2.48 33.66 3.36
653 3614 7.991460 GGCAAGTTAGGGTATTGTAACTAATCT 59.009 37.037 0.00 0.00 38.30 2.40
654 3615 7.991460 AGGCAAGTTAGGGTATTGTAACTAATC 59.009 37.037 0.00 0.00 38.30 1.75
655 3616 7.868974 AGGCAAGTTAGGGTATTGTAACTAAT 58.131 34.615 0.00 0.00 38.30 1.73
656 3617 7.261688 AGGCAAGTTAGGGTATTGTAACTAA 57.738 36.000 0.00 0.00 38.30 2.24
657 3618 6.879367 AGGCAAGTTAGGGTATTGTAACTA 57.121 37.500 0.00 0.00 38.30 2.24
658 3619 5.774102 AGGCAAGTTAGGGTATTGTAACT 57.226 39.130 0.00 0.00 40.47 2.24
659 3620 6.178324 AGAAGGCAAGTTAGGGTATTGTAAC 58.822 40.000 0.00 0.00 0.00 2.50
660 3621 6.382919 AGAAGGCAAGTTAGGGTATTGTAA 57.617 37.500 0.00 0.00 0.00 2.41
661 3622 6.382919 AAGAAGGCAAGTTAGGGTATTGTA 57.617 37.500 0.00 0.00 0.00 2.41
662 3623 4.929146 AGAAGGCAAGTTAGGGTATTGT 57.071 40.909 0.00 0.00 0.00 2.71
663 3624 5.710099 TGAAAGAAGGCAAGTTAGGGTATTG 59.290 40.000 0.00 0.00 0.00 1.90
664 3625 5.887754 TGAAAGAAGGCAAGTTAGGGTATT 58.112 37.500 0.00 0.00 0.00 1.89
665 3626 5.514500 TGAAAGAAGGCAAGTTAGGGTAT 57.486 39.130 0.00 0.00 0.00 2.73
666 3627 4.986054 TGAAAGAAGGCAAGTTAGGGTA 57.014 40.909 0.00 0.00 0.00 3.69
667 3628 3.876309 TGAAAGAAGGCAAGTTAGGGT 57.124 42.857 0.00 0.00 0.00 4.34
668 3629 4.619160 GCATTGAAAGAAGGCAAGTTAGGG 60.619 45.833 0.00 0.00 0.00 3.53
669 3630 4.022068 TGCATTGAAAGAAGGCAAGTTAGG 60.022 41.667 0.00 0.00 0.00 2.69
670 3631 5.125100 TGCATTGAAAGAAGGCAAGTTAG 57.875 39.130 0.00 0.00 0.00 2.34
671 3632 5.726980 ATGCATTGAAAGAAGGCAAGTTA 57.273 34.783 0.00 0.00 38.08 2.24
672 3633 4.612264 ATGCATTGAAAGAAGGCAAGTT 57.388 36.364 0.00 0.00 38.08 2.66
673 3634 5.655532 AGATATGCATTGAAAGAAGGCAAGT 59.344 36.000 3.54 0.00 38.08 3.16
674 3635 6.039493 AGAGATATGCATTGAAAGAAGGCAAG 59.961 38.462 3.54 0.00 38.08 4.01
675 3636 5.889853 AGAGATATGCATTGAAAGAAGGCAA 59.110 36.000 3.54 0.00 38.08 4.52
676 3637 5.298527 CAGAGATATGCATTGAAAGAAGGCA 59.701 40.000 3.54 0.00 39.03 4.75
677 3638 5.530171 TCAGAGATATGCATTGAAAGAAGGC 59.470 40.000 3.54 0.00 0.00 4.35
678 3639 6.293516 GCTCAGAGATATGCATTGAAAGAAGG 60.294 42.308 3.54 0.00 0.00 3.46
679 3640 6.293516 GGCTCAGAGATATGCATTGAAAGAAG 60.294 42.308 3.54 0.00 0.00 2.85
680 3641 5.530171 GGCTCAGAGATATGCATTGAAAGAA 59.470 40.000 3.54 0.00 0.00 2.52
681 3642 5.061853 GGCTCAGAGATATGCATTGAAAGA 58.938 41.667 3.54 0.00 0.00 2.52
682 3643 5.064558 AGGCTCAGAGATATGCATTGAAAG 58.935 41.667 3.54 0.00 0.00 2.62
683 3644 5.045012 AGGCTCAGAGATATGCATTGAAA 57.955 39.130 3.54 0.00 0.00 2.69
684 3645 4.701651 AGGCTCAGAGATATGCATTGAA 57.298 40.909 3.54 0.00 0.00 2.69
685 3646 5.813513 TTAGGCTCAGAGATATGCATTGA 57.186 39.130 3.54 0.46 0.00 2.57
686 3647 6.872628 TTTTAGGCTCAGAGATATGCATTG 57.127 37.500 3.54 0.00 0.00 2.82
687 3648 9.007901 GTTATTTTAGGCTCAGAGATATGCATT 57.992 33.333 3.54 0.00 0.00 3.56
688 3649 8.381636 AGTTATTTTAGGCTCAGAGATATGCAT 58.618 33.333 3.79 3.79 0.00 3.96
689 3650 7.739825 AGTTATTTTAGGCTCAGAGATATGCA 58.260 34.615 0.00 0.00 0.00 3.96
690 3651 8.614469 AAGTTATTTTAGGCTCAGAGATATGC 57.386 34.615 0.00 0.00 0.00 3.14
721 3682 9.255304 ACACAGTAAAATTGTAATTCGCAAAAT 57.745 25.926 0.43 0.00 0.00 1.82
722 3683 8.635877 ACACAGTAAAATTGTAATTCGCAAAA 57.364 26.923 0.43 0.00 0.00 2.44
723 3684 9.171701 GTACACAGTAAAATTGTAATTCGCAAA 57.828 29.630 0.00 0.00 0.00 3.68
724 3685 8.343366 TGTACACAGTAAAATTGTAATTCGCAA 58.657 29.630 0.00 0.00 0.00 4.85
725 3686 7.862648 TGTACACAGTAAAATTGTAATTCGCA 58.137 30.769 0.00 0.00 0.00 5.10
726 3687 8.889849 ATGTACACAGTAAAATTGTAATTCGC 57.110 30.769 0.00 0.00 0.00 4.70
759 3720 8.855110 TCACCATCAATTTGTTTGTATGTAGTT 58.145 29.630 0.00 0.00 36.65 2.24
760 3721 8.402798 TCACCATCAATTTGTTTGTATGTAGT 57.597 30.769 0.00 0.00 36.65 2.73
761 3722 9.689976 TTTCACCATCAATTTGTTTGTATGTAG 57.310 29.630 0.00 0.00 36.65 2.74
825 3786 9.231297 ACAGTTAGCATGTTGTTTACTATTGAT 57.769 29.630 0.00 0.00 0.00 2.57
826 3787 8.615878 ACAGTTAGCATGTTGTTTACTATTGA 57.384 30.769 0.00 0.00 0.00 2.57
827 3788 9.677567 AAACAGTTAGCATGTTGTTTACTATTG 57.322 29.630 7.38 1.46 40.74 1.90
828 3789 9.893305 GAAACAGTTAGCATGTTGTTTACTATT 57.107 29.630 8.68 0.00 42.09 1.73
829 3790 9.284968 AGAAACAGTTAGCATGTTGTTTACTAT 57.715 29.630 8.68 0.00 42.09 2.12
830 3791 8.671384 AGAAACAGTTAGCATGTTGTTTACTA 57.329 30.769 8.68 0.00 42.09 1.82
831 3792 7.568199 AGAAACAGTTAGCATGTTGTTTACT 57.432 32.000 8.68 6.36 42.09 2.24
832 3793 9.166126 GTTAGAAACAGTTAGCATGTTGTTTAC 57.834 33.333 8.68 2.70 42.09 2.01
833 3794 9.116067 AGTTAGAAACAGTTAGCATGTTGTTTA 57.884 29.630 8.68 0.00 42.09 2.01
834 3795 7.996385 AGTTAGAAACAGTTAGCATGTTGTTT 58.004 30.769 8.51 8.51 44.00 2.83
835 3796 7.568199 AGTTAGAAACAGTTAGCATGTTGTT 57.432 32.000 0.00 0.00 39.91 2.83
836 3797 7.568199 AAGTTAGAAACAGTTAGCATGTTGT 57.432 32.000 0.00 0.00 39.91 3.32
837 3798 8.856490 AAAAGTTAGAAACAGTTAGCATGTTG 57.144 30.769 0.00 0.00 39.91 3.33
838 3799 8.903820 AGAAAAGTTAGAAACAGTTAGCATGTT 58.096 29.630 0.00 0.00 42.55 2.71
839 3800 8.451908 AGAAAAGTTAGAAACAGTTAGCATGT 57.548 30.769 0.00 0.00 0.00 3.21
840 3801 9.387123 GAAGAAAAGTTAGAAACAGTTAGCATG 57.613 33.333 0.00 0.00 0.00 4.06
841 3802 9.120538 TGAAGAAAAGTTAGAAACAGTTAGCAT 57.879 29.630 0.00 0.00 0.00 3.79
842 3803 8.500753 TGAAGAAAAGTTAGAAACAGTTAGCA 57.499 30.769 0.00 0.00 0.00 3.49
843 3804 9.952188 AATGAAGAAAAGTTAGAAACAGTTAGC 57.048 29.630 0.00 0.00 0.00 3.09
854 3815 9.827411 GCCTAGTGTAAAATGAAGAAAAGTTAG 57.173 33.333 0.00 0.00 0.00 2.34
855 3816 9.569122 AGCCTAGTGTAAAATGAAGAAAAGTTA 57.431 29.630 0.00 0.00 0.00 2.24
856 3817 8.465273 AGCCTAGTGTAAAATGAAGAAAAGTT 57.535 30.769 0.00 0.00 0.00 2.66
857 3818 9.220767 CTAGCCTAGTGTAAAATGAAGAAAAGT 57.779 33.333 0.00 0.00 0.00 2.66
858 3819 9.220767 ACTAGCCTAGTGTAAAATGAAGAAAAG 57.779 33.333 2.96 0.00 37.69 2.27
860 3821 9.649167 GTACTAGCCTAGTGTAAAATGAAGAAA 57.351 33.333 14.69 0.00 39.81 2.52
861 3822 9.032624 AGTACTAGCCTAGTGTAAAATGAAGAA 57.967 33.333 14.69 0.00 39.81 2.52
862 3823 8.467598 CAGTACTAGCCTAGTGTAAAATGAAGA 58.532 37.037 14.69 0.00 39.81 2.87
863 3824 8.251721 ACAGTACTAGCCTAGTGTAAAATGAAG 58.748 37.037 14.69 0.00 39.81 3.02
864 3825 8.130671 ACAGTACTAGCCTAGTGTAAAATGAA 57.869 34.615 14.69 0.00 39.81 2.57
865 3826 7.713734 ACAGTACTAGCCTAGTGTAAAATGA 57.286 36.000 14.69 0.00 39.81 2.57
866 3827 7.648510 GCTACAGTACTAGCCTAGTGTAAAATG 59.351 40.741 14.69 6.48 39.81 2.32
867 3828 7.341256 TGCTACAGTACTAGCCTAGTGTAAAAT 59.659 37.037 14.69 0.00 38.77 1.82
868 3829 6.660521 TGCTACAGTACTAGCCTAGTGTAAAA 59.339 38.462 14.69 0.00 38.77 1.52
869 3830 6.094603 GTGCTACAGTACTAGCCTAGTGTAAA 59.905 42.308 14.69 0.00 38.77 2.01
870 3831 5.587844 GTGCTACAGTACTAGCCTAGTGTAA 59.412 44.000 14.69 0.00 38.77 2.41
871 3832 5.121811 GTGCTACAGTACTAGCCTAGTGTA 58.878 45.833 14.69 7.45 38.77 2.90
872 3833 3.946558 GTGCTACAGTACTAGCCTAGTGT 59.053 47.826 14.69 6.68 38.77 3.55
873 3834 3.315749 GGTGCTACAGTACTAGCCTAGTG 59.684 52.174 14.69 0.56 38.77 2.74
874 3835 3.553904 GGTGCTACAGTACTAGCCTAGT 58.446 50.000 13.80 9.74 38.77 2.57
875 3836 2.885894 GGGTGCTACAGTACTAGCCTAG 59.114 54.545 13.80 0.00 38.77 3.02
876 3837 2.747467 CGGGTGCTACAGTACTAGCCTA 60.747 54.545 13.80 0.00 38.77 3.93
877 3838 1.777941 GGGTGCTACAGTACTAGCCT 58.222 55.000 13.80 0.00 38.77 4.58
878 3839 0.384669 CGGGTGCTACAGTACTAGCC 59.615 60.000 13.80 7.78 38.77 3.93
879 3840 1.065251 GACGGGTGCTACAGTACTAGC 59.935 57.143 10.22 10.22 39.81 3.42
880 3841 2.641305 AGACGGGTGCTACAGTACTAG 58.359 52.381 0.00 0.00 0.00 2.57
881 3842 2.795231 AGACGGGTGCTACAGTACTA 57.205 50.000 0.00 0.00 0.00 1.82
882 3843 1.920610 AAGACGGGTGCTACAGTACT 58.079 50.000 0.00 0.00 0.00 2.73
883 3844 2.738013 AAAGACGGGTGCTACAGTAC 57.262 50.000 0.00 0.00 0.00 2.73
884 3845 2.895404 AGAAAAGACGGGTGCTACAGTA 59.105 45.455 0.00 0.00 0.00 2.74
885 3846 1.692519 AGAAAAGACGGGTGCTACAGT 59.307 47.619 0.00 0.00 0.00 3.55
886 3847 2.457366 AGAAAAGACGGGTGCTACAG 57.543 50.000 0.00 0.00 0.00 2.74
887 3848 2.922740 AAGAAAAGACGGGTGCTACA 57.077 45.000 0.00 0.00 0.00 2.74
888 3849 3.813724 AGAAAAGAAAAGACGGGTGCTAC 59.186 43.478 0.00 0.00 0.00 3.58
889 3850 4.081322 AGAAAAGAAAAGACGGGTGCTA 57.919 40.909 0.00 0.00 0.00 3.49
890 3851 2.932261 AGAAAAGAAAAGACGGGTGCT 58.068 42.857 0.00 0.00 0.00 4.40
891 3852 4.275196 ACTTAGAAAAGAAAAGACGGGTGC 59.725 41.667 0.00 0.00 36.50 5.01
892 3853 6.373186 AACTTAGAAAAGAAAAGACGGGTG 57.627 37.500 0.00 0.00 36.50 4.61
893 3854 7.503549 TCTAACTTAGAAAAGAAAAGACGGGT 58.496 34.615 0.00 0.00 36.50 5.28
894 3855 7.117956 CCTCTAACTTAGAAAAGAAAAGACGGG 59.882 40.741 0.19 0.00 36.50 5.28
895 3856 7.871463 TCCTCTAACTTAGAAAAGAAAAGACGG 59.129 37.037 0.19 0.00 36.50 4.79
896 3857 8.813643 TCCTCTAACTTAGAAAAGAAAAGACG 57.186 34.615 0.19 0.00 36.50 4.18
898 3859 9.945904 GGATCCTCTAACTTAGAAAAGAAAAGA 57.054 33.333 3.84 0.00 36.50 2.52
899 3860 8.874816 CGGATCCTCTAACTTAGAAAAGAAAAG 58.125 37.037 10.75 0.00 36.50 2.27
900 3861 7.822822 CCGGATCCTCTAACTTAGAAAAGAAAA 59.177 37.037 10.75 0.00 36.50 2.29
901 3862 7.038516 ACCGGATCCTCTAACTTAGAAAAGAAA 60.039 37.037 9.46 0.00 36.50 2.52
902 3863 6.439692 ACCGGATCCTCTAACTTAGAAAAGAA 59.560 38.462 9.46 0.00 36.50 2.52
903 3864 5.956563 ACCGGATCCTCTAACTTAGAAAAGA 59.043 40.000 9.46 0.00 36.50 2.52
904 3865 6.223351 ACCGGATCCTCTAACTTAGAAAAG 57.777 41.667 9.46 0.00 38.77 2.27
905 3866 6.351626 GGAACCGGATCCTCTAACTTAGAAAA 60.352 42.308 22.87 0.00 36.50 2.29
906 3867 5.128335 GGAACCGGATCCTCTAACTTAGAAA 59.872 44.000 22.87 0.00 36.50 2.52
907 3868 4.648307 GGAACCGGATCCTCTAACTTAGAA 59.352 45.833 22.87 0.00 36.50 2.10
908 3869 4.213513 GGAACCGGATCCTCTAACTTAGA 58.786 47.826 22.87 0.00 36.50 2.10
909 3870 4.587584 GGAACCGGATCCTCTAACTTAG 57.412 50.000 22.87 0.00 36.50 2.18
919 3880 1.002624 TGTGCAAGGAACCGGATCC 60.003 57.895 22.70 22.70 39.96 3.36
920 3881 1.635663 CGTGTGCAAGGAACCGGATC 61.636 60.000 9.46 5.54 0.00 3.36
921 3882 1.671054 CGTGTGCAAGGAACCGGAT 60.671 57.895 9.46 0.00 0.00 4.18
922 3883 2.280524 CGTGTGCAAGGAACCGGA 60.281 61.111 9.46 0.00 0.00 5.14
923 3884 4.025401 GCGTGTGCAAGGAACCGG 62.025 66.667 0.00 0.00 42.15 5.28
924 3885 2.972505 AGCGTGTGCAAGGAACCG 60.973 61.111 0.00 0.00 46.23 4.44
925 3886 1.845809 CTCAGCGTGTGCAAGGAACC 61.846 60.000 0.00 0.00 46.23 3.62
926 3887 1.571460 CTCAGCGTGTGCAAGGAAC 59.429 57.895 0.00 0.00 46.23 3.62
927 3888 1.597854 CCTCAGCGTGTGCAAGGAA 60.598 57.895 0.00 0.00 44.72 3.36
928 3889 2.031012 CCTCAGCGTGTGCAAGGA 59.969 61.111 0.00 0.00 44.72 3.36
929 3890 2.031012 TCCTCAGCGTGTGCAAGG 59.969 61.111 0.00 0.00 46.23 3.61
930 3891 0.038251 TAGTCCTCAGCGTGTGCAAG 60.038 55.000 0.00 0.00 46.23 4.01
931 3892 0.038251 CTAGTCCTCAGCGTGTGCAA 60.038 55.000 0.00 0.00 46.23 4.08
932 3893 1.586541 CTAGTCCTCAGCGTGTGCA 59.413 57.895 0.00 0.00 46.23 4.57
933 3894 1.153745 CCTAGTCCTCAGCGTGTGC 60.154 63.158 0.00 0.00 43.24 4.57
934 3895 1.513158 CCCTAGTCCTCAGCGTGTG 59.487 63.158 0.00 0.00 0.00 3.82
935 3896 2.352032 GCCCTAGTCCTCAGCGTGT 61.352 63.158 0.00 0.00 0.00 4.49
936 3897 2.496817 GCCCTAGTCCTCAGCGTG 59.503 66.667 0.00 0.00 0.00 5.34
937 3898 2.760385 GGCCCTAGTCCTCAGCGT 60.760 66.667 0.00 0.00 0.00 5.07
938 3899 3.541713 GGGCCCTAGTCCTCAGCG 61.542 72.222 17.04 0.00 33.65 5.18
944 3905 2.040606 TGGTCAGGGCCCTAGTCC 59.959 66.667 28.13 25.53 38.43 3.85
945 3906 0.399233 ATCTGGTCAGGGCCCTAGTC 60.399 60.000 28.13 17.37 0.00 2.59
946 3907 0.399233 GATCTGGTCAGGGCCCTAGT 60.399 60.000 28.13 8.99 0.00 2.57
947 3908 1.124477 GGATCTGGTCAGGGCCCTAG 61.124 65.000 28.13 19.26 0.00 3.02
948 3909 1.074471 GGATCTGGTCAGGGCCCTA 60.074 63.158 28.13 8.41 0.00 3.53
949 3910 2.367512 GGATCTGGTCAGGGCCCT 60.368 66.667 22.28 22.28 0.00 5.19
950 3911 3.493303 GGGATCTGGTCAGGGCCC 61.493 72.222 16.46 16.46 35.91 5.80
951 3912 3.866582 CGGGATCTGGTCAGGGCC 61.867 72.222 0.00 0.00 0.00 5.80
952 3913 4.554036 GCGGGATCTGGTCAGGGC 62.554 72.222 0.00 0.00 0.00 5.19
953 3914 4.227134 CGCGGGATCTGGTCAGGG 62.227 72.222 0.00 0.00 0.00 4.45
954 3915 4.899239 GCGCGGGATCTGGTCAGG 62.899 72.222 8.83 0.00 0.00 3.86
955 3916 3.842923 AGCGCGGGATCTGGTCAG 61.843 66.667 8.83 0.00 0.00 3.51
956 3917 4.147449 CAGCGCGGGATCTGGTCA 62.147 66.667 8.83 0.00 0.00 4.02
1123 4084 2.955859 ATCGGAGGGTGGGAAGGGA 61.956 63.158 0.00 0.00 0.00 4.20
1124 4085 2.366972 ATCGGAGGGTGGGAAGGG 60.367 66.667 0.00 0.00 0.00 3.95
1125 4086 1.056700 ATCATCGGAGGGTGGGAAGG 61.057 60.000 0.00 0.00 0.00 3.46
1126 4087 0.107456 CATCATCGGAGGGTGGGAAG 59.893 60.000 0.00 0.00 0.00 3.46
1128 4089 2.443394 GCATCATCGGAGGGTGGGA 61.443 63.158 4.96 0.00 0.00 4.37
1132 4093 4.241555 GCGGCATCATCGGAGGGT 62.242 66.667 0.00 0.00 0.00 4.34
1153 4114 1.850640 CAAGCAAGCAAGCAAAGCG 59.149 52.632 3.19 0.00 36.85 4.68
1174 4135 3.364964 CGAACCCACAATAACAACAGCTC 60.365 47.826 0.00 0.00 0.00 4.09
1175 4136 2.552315 CGAACCCACAATAACAACAGCT 59.448 45.455 0.00 0.00 0.00 4.24
1176 4137 2.351350 CCGAACCCACAATAACAACAGC 60.351 50.000 0.00 0.00 0.00 4.40
1177 4138 2.882137 ACCGAACCCACAATAACAACAG 59.118 45.455 0.00 0.00 0.00 3.16
1181 4142 3.288964 ACAAACCGAACCCACAATAACA 58.711 40.909 0.00 0.00 0.00 2.41
1185 4146 2.740256 GCAAACAAACCGAACCCACAAT 60.740 45.455 0.00 0.00 0.00 2.71
1187 4148 0.173708 GCAAACAAACCGAACCCACA 59.826 50.000 0.00 0.00 0.00 4.17
1189 4150 0.457851 CTGCAAACAAACCGAACCCA 59.542 50.000 0.00 0.00 0.00 4.51
1284 4245 0.474660 AAGGGGAAGAGGAGCACTGT 60.475 55.000 0.00 0.00 0.00 3.55
1285 4246 0.695347 AAAGGGGAAGAGGAGCACTG 59.305 55.000 0.00 0.00 0.00 3.66
1286 4247 1.352687 GAAAAGGGGAAGAGGAGCACT 59.647 52.381 0.00 0.00 0.00 4.40
1287 4248 1.614583 GGAAAAGGGGAAGAGGAGCAC 60.615 57.143 0.00 0.00 0.00 4.40
1288 4249 0.698818 GGAAAAGGGGAAGAGGAGCA 59.301 55.000 0.00 0.00 0.00 4.26
1289 4250 0.033991 GGGAAAAGGGGAAGAGGAGC 60.034 60.000 0.00 0.00 0.00 4.70
1291 4252 1.993301 GAAGGGAAAAGGGGAAGAGGA 59.007 52.381 0.00 0.00 0.00 3.71
1293 4254 1.006043 GGGAAGGGAAAAGGGGAAGAG 59.994 57.143 0.00 0.00 0.00 2.85
1294 4255 1.081481 GGGAAGGGAAAAGGGGAAGA 58.919 55.000 0.00 0.00 0.00 2.87
1297 4261 1.007607 GATGGGAAGGGAAAAGGGGA 58.992 55.000 0.00 0.00 0.00 4.81
1310 4274 2.006873 TGAATCAAAAGGGGGATGGGA 58.993 47.619 0.00 0.00 0.00 4.37
1326 4555 9.829507 CCTGTATCTAGTTCTGAATTTCTGAAT 57.170 33.333 18.08 11.50 36.85 2.57
1334 4563 5.658634 TGCTCACCTGTATCTAGTTCTGAAT 59.341 40.000 0.00 0.00 0.00 2.57
1336 4565 4.600062 TGCTCACCTGTATCTAGTTCTGA 58.400 43.478 0.00 0.00 0.00 3.27
1337 4566 4.736168 GCTGCTCACCTGTATCTAGTTCTG 60.736 50.000 0.00 0.00 0.00 3.02
1338 4567 3.383185 GCTGCTCACCTGTATCTAGTTCT 59.617 47.826 0.00 0.00 0.00 3.01
1339 4568 3.383185 AGCTGCTCACCTGTATCTAGTTC 59.617 47.826 0.00 0.00 0.00 3.01
1341 4570 3.025322 AGCTGCTCACCTGTATCTAGT 57.975 47.619 0.00 0.00 0.00 2.57
1342 4571 4.023279 CAGTAGCTGCTCACCTGTATCTAG 60.023 50.000 4.91 0.00 0.00 2.43
1347 4581 1.186200 CCAGTAGCTGCTCACCTGTA 58.814 55.000 4.91 0.00 0.00 2.74
1350 4584 2.664081 GGCCAGTAGCTGCTCACCT 61.664 63.158 4.91 0.00 43.05 4.00
1352 4586 2.510238 CGGCCAGTAGCTGCTCAC 60.510 66.667 4.91 3.26 42.11 3.51
1367 4605 3.170791 CTACCTAGCATGCCATATCGG 57.829 52.381 15.66 8.40 38.11 4.18
1384 4622 0.171903 CAACATGGCCAAGCAGCTAC 59.828 55.000 10.96 0.00 0.00 3.58
1388 4630 2.231964 ACATAACAACATGGCCAAGCAG 59.768 45.455 10.96 3.77 0.00 4.24
1390 4632 2.609350 CACATAACAACATGGCCAAGC 58.391 47.619 10.96 0.00 0.00 4.01
1425 4670 3.342370 CTGCGCACCGAGCTAGTGA 62.342 63.158 18.19 0.00 42.61 3.41
1448 4693 3.004106 GCATCCAATCTCCACTGTATTGC 59.996 47.826 0.00 0.00 30.81 3.56
1472 4718 5.180868 CAGGAAATCTATCTATGCAAGCACC 59.819 44.000 0.00 0.00 0.00 5.01
1476 4722 7.281774 ACAACACAGGAAATCTATCTATGCAAG 59.718 37.037 0.00 0.00 0.00 4.01
1477 4723 7.112122 ACAACACAGGAAATCTATCTATGCAA 58.888 34.615 0.00 0.00 0.00 4.08
1481 4727 7.281774 CAGCAACAACACAGGAAATCTATCTAT 59.718 37.037 0.00 0.00 0.00 1.98
1508 4754 1.512734 CGCGCAGATGCAAACCTTC 60.513 57.895 8.75 0.00 42.21 3.46
1513 4759 3.126879 CCTCCGCGCAGATGCAAA 61.127 61.111 8.75 0.00 42.21 3.68
1518 4764 2.185350 CTGAACCTCCGCGCAGAT 59.815 61.111 8.75 0.00 0.00 2.90
1551 4797 1.076777 CCTTGCCATCCATTCCGGT 60.077 57.895 0.00 0.00 35.57 5.28
1566 4812 3.238597 TGCTGCTAAATTTTCCCACCTT 58.761 40.909 0.00 0.00 0.00 3.50
1569 4815 3.507622 AGACTGCTGCTAAATTTTCCCAC 59.492 43.478 0.00 0.00 0.00 4.61
1602 4848 0.179129 GCCATCCAACAAATCTGCGG 60.179 55.000 0.00 0.00 0.00 5.69
1603 4849 0.813184 AGCCATCCAACAAATCTGCG 59.187 50.000 0.00 0.00 0.00 5.18
1683 4929 1.542915 TCATTGCCAAAGAAGCTGAGC 59.457 47.619 0.00 0.00 0.00 4.26
1689 4935 3.991773 CCAACATGTCATTGCCAAAGAAG 59.008 43.478 0.00 0.00 0.00 2.85
1692 4938 3.663995 TCCAACATGTCATTGCCAAAG 57.336 42.857 0.00 0.00 0.00 2.77
1693 4939 4.771577 AGTATCCAACATGTCATTGCCAAA 59.228 37.500 0.00 0.00 0.00 3.28
1695 4941 3.947196 GAGTATCCAACATGTCATTGCCA 59.053 43.478 0.00 0.00 0.00 4.92
1696 4942 4.202441 AGAGTATCCAACATGTCATTGCC 58.798 43.478 0.00 0.00 33.66 4.52
1697 4943 4.877823 TGAGAGTATCCAACATGTCATTGC 59.122 41.667 0.00 0.00 33.66 3.56
1698 4944 6.457934 GCTTGAGAGTATCCAACATGTCATTG 60.458 42.308 0.00 0.00 33.66 2.82
1699 4945 5.587844 GCTTGAGAGTATCCAACATGTCATT 59.412 40.000 0.00 0.00 33.66 2.57
1700 4946 5.104610 AGCTTGAGAGTATCCAACATGTCAT 60.105 40.000 0.00 0.00 33.66 3.06
1701 4947 4.223700 AGCTTGAGAGTATCCAACATGTCA 59.776 41.667 0.00 0.00 33.66 3.58
1702 4948 4.764172 AGCTTGAGAGTATCCAACATGTC 58.236 43.478 0.00 0.00 33.66 3.06
1703 4949 4.833478 AGCTTGAGAGTATCCAACATGT 57.167 40.909 0.00 0.00 33.66 3.21
1704 4950 5.233050 CGTTAGCTTGAGAGTATCCAACATG 59.767 44.000 0.00 0.00 33.66 3.21
1705 4951 5.352284 CGTTAGCTTGAGAGTATCCAACAT 58.648 41.667 0.00 0.00 33.66 2.71
1706 4952 4.744570 CGTTAGCTTGAGAGTATCCAACA 58.255 43.478 0.00 0.00 33.66 3.33
1707 4953 3.552294 GCGTTAGCTTGAGAGTATCCAAC 59.448 47.826 0.00 0.00 41.01 3.77
1714 4960 2.224305 ACAAAGGCGTTAGCTTGAGAGT 60.224 45.455 0.00 0.00 44.37 3.24
1746 4992 1.519408 TTCGGAAAGCTGTTAGGTGC 58.481 50.000 0.00 0.00 0.00 5.01
1793 5039 1.429930 TGTGGAGGCCTTTGTAGTCA 58.570 50.000 6.77 0.00 0.00 3.41
1864 5110 2.030363 CAGAGAGTATGTCCTCGGCATC 60.030 54.545 0.00 0.00 36.56 3.91
1902 5168 7.554118 TGTTCAGAGAAGTTGATCAGAAAAACT 59.446 33.333 0.00 0.00 35.70 2.66
1927 5193 9.474920 ACAATTATATCAAACAAACCACACTTG 57.525 29.630 0.00 0.00 0.00 3.16
1986 5260 4.689812 CACTGTCAACTCCTGAAAGAGATG 59.310 45.833 0.00 0.00 41.47 2.90
2046 5320 4.392138 GGTCTGGCTTCAACAACTGTATAC 59.608 45.833 0.00 0.00 0.00 1.47
2053 5327 4.072131 TGATAAGGTCTGGCTTCAACAAC 58.928 43.478 0.00 0.00 0.00 3.32
2149 5425 9.944663 GACAGAACATGAGTAAAATTGTTTGTA 57.055 29.630 0.00 0.00 32.73 2.41
2150 5426 8.686334 AGACAGAACATGAGTAAAATTGTTTGT 58.314 29.630 0.00 0.00 32.73 2.83
2151 5427 9.520204 AAGACAGAACATGAGTAAAATTGTTTG 57.480 29.630 0.00 0.00 32.73 2.93
2153 5429 7.649306 GCAAGACAGAACATGAGTAAAATTGTT 59.351 33.333 0.00 0.00 35.14 2.83
2162 5634 2.149578 GCAGCAAGACAGAACATGAGT 58.850 47.619 0.00 0.00 0.00 3.41
2165 5637 0.870393 ACGCAGCAAGACAGAACATG 59.130 50.000 0.00 0.00 0.00 3.21
2168 5640 2.475200 AAAACGCAGCAAGACAGAAC 57.525 45.000 0.00 0.00 0.00 3.01
2280 5752 4.593206 TCCACTGTGGATAGACAAGAAACT 59.407 41.667 25.12 0.00 42.67 2.66
2328 5800 3.620374 CACTGAAGCTTATCGATGCAGTT 59.380 43.478 8.54 0.00 33.29 3.16
2356 5831 6.051074 TCTGCACATGTATGACTTCCTAATG 58.949 40.000 0.00 0.00 0.00 1.90
2371 5846 2.777494 CTACGCACAATTCTGCACATG 58.223 47.619 6.50 0.00 36.94 3.21
2415 5890 4.321750 GCTGGAGCAATATGGATTGGATTG 60.322 45.833 0.00 0.00 42.44 2.67
2432 5907 4.202010 GCAGAGAACTCTTACTAGCTGGAG 60.202 50.000 3.17 2.76 37.98 3.86
2437 5912 3.028130 AGGGCAGAGAACTCTTACTAGC 58.972 50.000 1.24 2.59 37.98 3.42
2461 5936 4.811024 ACATGTTTAGCCGTGATGATACAG 59.189 41.667 0.00 0.00 0.00 2.74
2485 5960 5.178797 AGCGAGTAACATGCATTTAGTTCT 58.821 37.500 0.00 0.00 0.00 3.01
2507 5982 2.987413 TATCAAACCACAAGCGCAAG 57.013 45.000 11.47 3.32 43.44 4.01
2510 5985 2.939103 AGAGATATCAAACCACAAGCGC 59.061 45.455 0.00 0.00 0.00 5.92
2592 6814 9.515020 GTCAACATCAATAAAGTTTGAACAGAA 57.485 29.630 0.00 0.00 38.98 3.02
2655 6877 1.766069 AATGTTTTTCGCGCTCCAAC 58.234 45.000 5.56 3.74 0.00 3.77
2663 6885 1.262950 GGGGTTGCAAATGTTTTTCGC 59.737 47.619 0.00 0.00 0.00 4.70
2677 6899 6.187682 AGTTCCTTCACTATATTTGGGGTTG 58.812 40.000 0.00 0.00 0.00 3.77
2739 6961 2.956333 TCTCTAAGCGCCTATACAAGCA 59.044 45.455 2.29 0.00 0.00 3.91
2783 7005 0.321671 AGGCGCTAAGTTGCTTCTCA 59.678 50.000 7.64 0.00 0.00 3.27
2790 7012 3.064207 TGTAACAAGAGGCGCTAAGTTG 58.936 45.455 7.64 8.97 0.00 3.16
2833 7055 1.121240 CAGCGGACGACTTATTAGCG 58.879 55.000 0.00 0.00 0.00 4.26
2860 7082 1.231296 TTGCCGCACAAGATAACGCA 61.231 50.000 0.00 0.00 33.24 5.24
3024 7247 3.336182 TGGCAACACTAGCATCCAGCA 62.336 52.381 0.00 0.00 45.68 4.41
3183 7417 3.434984 GCAGAGCAACTTTAGAGAGGTTG 59.565 47.826 0.00 0.00 41.96 3.77
3297 7531 4.804261 GCATGTACCTCCATATCCTTGACC 60.804 50.000 0.00 0.00 0.00 4.02
3330 7564 7.816640 TGTTTGTAATTCATAAGCTGAACTCC 58.183 34.615 0.00 0.00 46.37 3.85
3371 7605 5.048713 CAGTAGGGTGAACAAACTCCATTTC 60.049 44.000 0.00 0.00 0.00 2.17
3440 7674 1.213296 ATAGGTGCCCACGGAAGAAT 58.787 50.000 0.00 0.00 0.00 2.40
3447 7681 7.360946 GCTCTAATAAAAATATAGGTGCCCACG 60.361 40.741 0.00 0.00 0.00 4.94
3450 7684 7.175797 AGGCTCTAATAAAAATATAGGTGCCC 58.824 38.462 0.00 0.00 35.22 5.36
3489 7723 2.911143 CCCGGGTGCAGAATAGCT 59.089 61.111 14.18 0.00 34.99 3.32
3494 7728 3.329542 GATGAGCCCGGGTGCAGAA 62.330 63.158 24.63 2.36 0.00 3.02
3506 7740 0.753262 ACATCCGGGTGTAGATGAGC 59.247 55.000 21.57 0.00 42.04 4.26
3507 7741 2.031870 TCACATCCGGGTGTAGATGAG 58.968 52.381 22.55 7.20 42.04 2.90
3508 7742 2.153034 TCACATCCGGGTGTAGATGA 57.847 50.000 22.55 11.14 42.04 2.92
3509 7743 2.093711 TGTTCACATCCGGGTGTAGATG 60.094 50.000 22.55 8.54 44.44 2.90
3510 7744 2.168521 CTGTTCACATCCGGGTGTAGAT 59.831 50.000 22.55 0.00 39.76 1.98
3511 7745 1.548719 CTGTTCACATCCGGGTGTAGA 59.451 52.381 22.55 17.24 39.76 2.59
3512 7746 1.275291 ACTGTTCACATCCGGGTGTAG 59.725 52.381 22.55 16.93 39.76 2.74
3514 7748 1.344065 TACTGTTCACATCCGGGTGT 58.656 50.000 16.61 16.61 39.76 4.16
3515 7749 2.465860 TTACTGTTCACATCCGGGTG 57.534 50.000 14.80 14.80 40.16 4.61
3517 7751 6.503589 TTTAATTTACTGTTCACATCCGGG 57.496 37.500 0.00 0.00 0.00 5.73
3547 8477 2.571212 TCGTTGCCTCAAAATGTCAGT 58.429 42.857 0.00 0.00 0.00 3.41
3552 8482 4.164822 ACATCTTCGTTGCCTCAAAATG 57.835 40.909 0.00 0.00 0.00 2.32
3599 8529 2.079158 CAGATGTCAAGCACCACGATT 58.921 47.619 0.00 0.00 0.00 3.34
3653 8584 5.836821 ATCAGCTACGAATAGTGTTCTCA 57.163 39.130 0.00 0.00 0.00 3.27
3654 8585 7.527084 AAAATCAGCTACGAATAGTGTTCTC 57.473 36.000 0.00 0.00 0.00 2.87
3695 8632 8.954950 ACAAATTTTCATGTTGTTTGGACATA 57.045 26.923 14.87 0.00 36.04 2.29
3707 8644 5.466393 GCAAGGTGCTTACAAATTTTCATGT 59.534 36.000 0.00 0.00 40.96 3.21
3836 8785 5.839621 TCAGTAAAGAACTACTCAAAGCGT 58.160 37.500 0.00 0.00 35.76 5.07
3927 8882 1.073763 ACTGAGTTGCCAGCCATAACA 59.926 47.619 0.00 0.00 37.68 2.41
3974 8935 6.476243 AATTACAGTTTGTTAGCAGGTACG 57.524 37.500 0.00 0.00 0.00 3.67
4045 9125 2.120909 AACATATGCCACCGCTGCC 61.121 57.895 1.58 0.00 35.36 4.85
4275 9361 8.424918 ACAAATATATATATTCAGGCTCCCTCG 58.575 37.037 16.55 0.00 32.08 4.63
4296 9382 7.122650 CCAGGAAACACTATACATCCAACAAAT 59.877 37.037 0.00 0.00 32.47 2.32
4297 9383 6.432783 CCAGGAAACACTATACATCCAACAAA 59.567 38.462 0.00 0.00 32.47 2.83
4298 9384 5.943416 CCAGGAAACACTATACATCCAACAA 59.057 40.000 0.00 0.00 32.47 2.83
4312 9398 1.407618 GTGAAACCACCCAGGAAACAC 59.592 52.381 0.00 0.00 41.22 3.32
4324 9410 6.876789 AGAATGTATAATCGTGTGTGAAACCA 59.123 34.615 0.00 0.00 34.36 3.67
4341 9427 9.170890 TCTTTCATAGGGGTTATGAGAATGTAT 57.829 33.333 0.00 0.00 46.59 2.29
4351 9437 7.069950 GCCAAGAATTTCTTTCATAGGGGTTAT 59.930 37.037 8.95 0.00 33.78 1.89
4363 9449 6.208599 TCCAAGTAATCGCCAAGAATTTCTTT 59.791 34.615 8.95 0.00 33.78 2.52
4496 9583 0.747255 ATCGTCCTGAATCCGTGGAG 59.253 55.000 0.00 0.00 0.00 3.86
4497 9584 0.459899 CATCGTCCTGAATCCGTGGA 59.540 55.000 0.00 0.00 0.00 4.02
4501 9588 1.134818 TCAACCATCGTCCTGAATCCG 60.135 52.381 0.00 0.00 0.00 4.18
4510 9597 0.676466 TGCACCCATCAACCATCGTC 60.676 55.000 0.00 0.00 0.00 4.20
4513 9600 0.323725 AGGTGCACCCATCAACCATC 60.324 55.000 32.29 2.51 36.42 3.51
4525 9612 3.368571 GGAGCTGCCAAGGTGCAC 61.369 66.667 8.80 8.80 41.49 4.57
4589 9677 4.396166 CCTTTACTACTCACTGCAATTGGG 59.604 45.833 7.72 0.00 0.00 4.12
4594 9682 3.071023 AGTGCCTTTACTACTCACTGCAA 59.929 43.478 0.00 0.00 36.72 4.08
4618 9706 1.662044 CACAGCTGCTCCCCAAAAC 59.338 57.895 15.27 0.00 0.00 2.43
4638 9726 9.208022 GCAGTTAACTCATTCAGCATACATATA 57.792 33.333 4.77 0.00 0.00 0.86
4690 9778 5.297547 GTGCTCAGAATTGAATATCCGGTA 58.702 41.667 0.00 0.00 31.69 4.02
4728 9816 3.181451 CGATCAGATGGGGAGGATTTCAA 60.181 47.826 0.00 0.00 0.00 2.69
4742 9830 3.808174 CACACATCTTCATGCGATCAGAT 59.192 43.478 0.00 0.00 32.57 2.90
4827 9915 4.697828 TGCCTGTCGTTGCAATTAATAAGA 59.302 37.500 0.59 0.00 33.87 2.10
4830 9918 5.574891 AATGCCTGTCGTTGCAATTAATA 57.425 34.783 0.59 0.00 41.50 0.98
4850 9938 5.428184 AGCTGTTCTGCCTCTAACTTAAT 57.572 39.130 0.00 0.00 0.00 1.40
4892 9980 3.576118 GCTCAGTCTGGCATAGGAGAATA 59.424 47.826 0.00 0.00 0.00 1.75
5003 10095 0.604578 TGGGTAGTGGAGTTGTACGC 59.395 55.000 0.00 0.00 0.00 4.42
5004 10096 2.494471 TCATGGGTAGTGGAGTTGTACG 59.506 50.000 0.00 0.00 0.00 3.67
5034 10126 6.942576 GGCACTCTTGATATTAACCATACCAT 59.057 38.462 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.