AutoCloner

Multiple sequence alignment - TraesCS1B01G060600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G060600	chr1B	100.000	2776	0	0	1	2776	44036696	44039471	0.000000e+00	5127.0
1	TraesCS1B01G060600	chr1B	93.291	939	62	1	1	938	86408766	86409704	0.000000e+00	1384.0
2	TraesCS1B01G060600	chr2D	85.999	2714	314	48	1	2675	465843591	465846277	0.000000e+00	2846.0
3	TraesCS1B01G060600	chr5B	93.302	1702	88	20	1090	2776	164423490	164425180	0.000000e+00	2488.0
4	TraesCS1B01G060600	chr5B	95.490	909	40	1	1	909	164421571	164422478	0.000000e+00	1450.0
5	TraesCS1B01G060600	chr5B	96.875	96	3	0	1000	1095	164422478	164422573	7.960000e-36	161.0
6	TraesCS1B01G060600	chr7B	82.280	2026	278	43	659	2638	283632899	283634889	0.000000e+00	1677.0
7	TraesCS1B01G060600	chr7B	93.228	945	63	1	1	944	164832938	164831994	0.000000e+00	1389.0
8	TraesCS1B01G060600	chr7B	82.313	294	41	9	2439	2725	557205230	557205519	7.680000e-61	244.0
9	TraesCS1B01G060600	chr5D	85.852	1350	174	12	960	2299	88291509	88290167	0.000000e+00	1419.0
10	TraesCS1B01G060600	chr5D	87.319	276	26	6	2458	2730	88281796	88281527	9.660000e-80	307.0
11	TraesCS1B01G060600	chr5D	84.211	133	16	5	2353	2484	166258880	166258752	1.040000e-24	124.0
12	TraesCS1B01G060600	chr3B	93.340	946	59	4	1	944	751582166	751581223	0.000000e+00	1395.0
13	TraesCS1B01G060600	chr3B	93.114	944	63	2	1	944	79242911	79241970	0.000000e+00	1382.0
14	TraesCS1B01G060600	chr6A	93.319	943	62	1	1	943	404864	403923	0.000000e+00	1391.0
15	TraesCS1B01G060600	chr6B	93.220	944	63	1	1	944	423111497	423110555	0.000000e+00	1387.0
16	TraesCS1B01G060600	chr6B	93.213	943	63	1	1	943	3519604	3518663	0.000000e+00	1386.0
17	TraesCS1B01G060600	chr6B	84.561	285	26	11	2454	2725	69094559	69094280	1.640000e-67	267.0
18	TraesCS1B01G060600	chr3A	84.886	1224	158	20	834	2044	264229797	264228588	0.000000e+00	1210.0
19	TraesCS1B01G060600	chr3A	84.550	1178	153	15	1141	2299	264142409	264141242	0.000000e+00	1140.0
20	TraesCS1B01G060600	chr3A	100.000	31	0	0	2351	2381	264141227	264141197	1.070000e-04	58.4
21	TraesCS1B01G060600	chr2B	83.816	414	33	20	2342	2729	666046650	666046245	2.030000e-96	363.0
22	TraesCS1B01G060600	chr2B	87.736	212	11	4	1255	1454	477775431	477775223	1.660000e-57	233.0
23	TraesCS1B01G060600	chr2B	86.014	143	14	6	2342	2483	666046593	666046456	6.190000e-32	148.0
24	TraesCS1B01G060600	chr2B	90.123	81	5	1	1781	1858	477775103	477775183	4.890000e-18	102.0
25	TraesCS1B01G060600	chr3D	84.049	326	43	8	2454	2776	501958173	501958492	3.470000e-79	305.0
26	TraesCS1B01G060600	chr7D	88.333	240	20	4	2406	2645	454851719	454851488	5.850000e-72	281.0
27	TraesCS1B01G060600	chr1A	82.301	339	33	17	2407	2728	233186249	233185921	4.560000e-68	268.0
28	TraesCS1B01G060600	chr1A	82.188	320	44	10	2408	2724	483478725	483479034	2.120000e-66	263.0
29	TraesCS1B01G060600	chr4D	78.808	302	28	23	2500	2776	230723374	230723664	1.320000e-38	171.0
30	TraesCS1B01G060600	chr4D	95.876	97	3	1	2681	2776	230723409	230723505	3.700000e-34	156.0
31	TraesCS1B01G060600	chr7A	86.364	132	12	6	2353	2482	61917594	61917467	3.730000e-29	139.0
32	TraesCS1B01G060600	chr5A	79.167	96	16	4	2683	2776	457134020	457134113	2.310000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G060600	chr1B	44036696	44039471	2775	False	5127.000000	5127	100.000000	1	2776	1	chr1B.!!$F1	2775
1	TraesCS1B01G060600	chr1B	86408766	86409704	938	False	1384.000000	1384	93.291000	1	938	1	chr1B.!!$F2	937
2	TraesCS1B01G060600	chr2D	465843591	465846277	2686	False	2846.000000	2846	85.999000	1	2675	1	chr2D.!!$F1	2674
3	TraesCS1B01G060600	chr5B	164421571	164425180	3609	False	1366.333333	2488	95.222333	1	2776	3	chr5B.!!$F1	2775
4	TraesCS1B01G060600	chr7B	283632899	283634889	1990	False	1677.000000	1677	82.280000	659	2638	1	chr7B.!!$F1	1979
5	TraesCS1B01G060600	chr7B	164831994	164832938	944	True	1389.000000	1389	93.228000	1	944	1	chr7B.!!$R1	943
6	TraesCS1B01G060600	chr5D	88290167	88291509	1342	True	1419.000000	1419	85.852000	960	2299	1	chr5D.!!$R2	1339
7	TraesCS1B01G060600	chr3B	751581223	751582166	943	True	1395.000000	1395	93.340000	1	944	1	chr3B.!!$R2	943
8	TraesCS1B01G060600	chr3B	79241970	79242911	941	True	1382.000000	1382	93.114000	1	944	1	chr3B.!!$R1	943
9	TraesCS1B01G060600	chr6A	403923	404864	941	True	1391.000000	1391	93.319000	1	943	1	chr6A.!!$R1	942
10	TraesCS1B01G060600	chr6B	423110555	423111497	942	True	1387.000000	1387	93.220000	1	944	1	chr6B.!!$R3	943
11	TraesCS1B01G060600	chr6B	3518663	3519604	941	True	1386.000000	1386	93.213000	1	943	1	chr6B.!!$R1	942
12	TraesCS1B01G060600	chr3A	264228588	264229797	1209	True	1210.000000	1210	84.886000	834	2044	1	chr3A.!!$R1	1210
13	TraesCS1B01G060600	chr3A	264141197	264142409	1212	True	599.200000	1140	92.275000	1141	2381	2	chr3A.!!$R2	1240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
954	971	0.108207	AGGATGCTGCTACATGCTCC	59.892	55.0	7.54	0.02	44.4	4.7	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1904	2867	1.815003	CAGCTTCTTGGCTTCGGATTT	59.185	47.619	0.0	0.0	41.0	2.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	53	7.610305	GTGGATGGGTCTTTATCTAAGAAAACA	59.390	37.037	0.00	0.00	44.25	2.83
186	187	3.307674	GCACGCATTTTCTTTGATGACA	58.692	40.909	0.00	0.00	0.00	3.58
372	375	4.185394	TGCACGACAACTTACTTTGAGAA	58.815	39.130	0.00	0.00	0.00	2.87
391	394	2.887151	AAACAAGTGCCCTATGCTCT	57.113	45.000	0.00	0.00	45.37	4.09
437	440	2.554032	GGATACTGGTGTTGCATATGCC	59.446	50.000	24.54	10.91	41.18	4.40
445	448	3.384467	GGTGTTGCATATGCCTATTGGTT	59.616	43.478	24.54	0.00	41.18	3.67
787	790	1.380302	GGCGCCCCATTCTATCCAT	59.620	57.895	18.11	0.00	0.00	3.41
814	817	7.687941	TCCTCTCAAATGATGAACCTTTAAC	57.312	36.000	0.00	0.00	37.67	2.01
930	947	7.106239	TCTCCTTTCAATAGAAGAAGCGAAAT	58.894	34.615	0.00	0.00	34.71	2.17
944	961	2.098117	AGCGAAATGTTAAGGATGCTGC	59.902	45.455	0.00	0.00	0.00	5.25
954	971	0.108207	AGGATGCTGCTACATGCTCC	59.892	55.000	7.54	0.02	44.40	4.70
956	973	1.345741	GGATGCTGCTACATGCTCCTA	59.654	52.381	0.00	0.00	43.37	2.94
990	1007	3.848975	AGACTTTGACTGATGGGGAAGAT	59.151	43.478	0.00	0.00	0.00	2.40
991	1008	5.032846	AGACTTTGACTGATGGGGAAGATA	58.967	41.667	0.00	0.00	0.00	1.98
997	1014	4.228210	TGACTGATGGGGAAGATAAAGCTT	59.772	41.667	0.00	0.00	0.00	3.74
1047	1064	4.496336	AGGCCCGCCATCAGAAGC	62.496	66.667	8.74	0.00	38.92	3.86
1111	2050	0.973632	ATTGGACGTGCCTCTACACA	59.026	50.000	4.04	0.00	40.73	3.72
1114	2053	0.246635	GGACGTGCCTCTACACATGT	59.753	55.000	0.00	0.00	40.73	3.21
1279	2222	0.323957	AAACCTACCTCCAACGGCTC	59.676	55.000	0.00	0.00	0.00	4.70
1283	2226	0.824109	CTACCTCCAACGGCTCATGA	59.176	55.000	0.00	0.00	0.00	3.07
1445	2404	1.750399	GGCAATGGCGTCCACAGAT	60.750	57.895	0.50	0.00	42.47	2.90
1456	2415	3.368236	GCGTCCACAGATGTTTCTTCTAC	59.632	47.826	0.00	0.00	0.00	2.59
1489	2448	5.762179	TTTGTAGAGACCATTGACAGGAT	57.238	39.130	0.00	0.00	0.00	3.24
1529	2488	4.592485	AGGCTTAGACGATTCCACTATG	57.408	45.455	0.00	0.00	0.00	2.23
1560	2519	1.225376	ACGCCGCGACATTCTTCAAA	61.225	50.000	21.79	0.00	0.00	2.69
1590	2549	3.925630	ATGCTGCCAAGTGGGGTCG	62.926	63.158	0.00	0.00	37.04	4.79
1675	2634	1.023513	CAAGGAGCTCGCAAGGGAAG	61.024	60.000	7.83	0.00	44.69	3.46
1987	2950	5.770162	GGAATTGAAGGTTCTTGAGGAGAAA	59.230	40.000	0.00	0.00	45.59	2.52
2127	3093	3.558931	ATCTCGGCCATGTCATTTGTA	57.441	42.857	2.24	0.00	0.00	2.41
2146	3112	9.524106	CATTTGTATTATTCACACATGATTGCT	57.476	29.630	0.00	0.00	36.59	3.91
2190	3156	4.174383	AGCTAAGCCCTCTTCATATGGAT	58.826	43.478	2.13	0.00	33.85	3.41
2196	3162	6.770286	AGCCCTCTTCATATGGATTTTCTA	57.230	37.500	2.13	0.00	0.00	2.10
2334	3314	4.442706	AGTTTAAGCTCGTGATGGTATGG	58.557	43.478	0.00	0.00	0.00	2.74
2433	3445	7.919621	GCCACAGTATAGACTCGTAAGTTTATT	59.080	37.037	0.00	0.00	35.20	1.40
2437	3449	9.666626	CAGTATAGACTCGTAAGTTTATTGGAG	57.333	37.037	0.00	0.00	35.20	3.86
2441	3453	7.171630	AGACTCGTAAGTTTATTGGAGTGAT	57.828	36.000	0.00	0.00	35.28	3.06
2442	3454	7.612677	AGACTCGTAAGTTTATTGGAGTGATT	58.387	34.615	0.00	0.00	35.28	2.57
2445	3457	8.504005	ACTCGTAAGTTTATTGGAGTGATTTTG	58.496	33.333	0.00	0.00	33.80	2.44
2462	3487	6.639279	GTGATTTTGTTTACGCCACAGTTTAT	59.361	34.615	0.00	0.00	0.00	1.40
2469	3494	2.602878	ACGCCACAGTTTATACTCGTG	58.397	47.619	8.09	8.09	32.12	4.35
2516	3598	3.142174	GCCCCAGTTTATACTCATGAGC	58.858	50.000	22.83	5.16	30.26	4.26
2527	3609	7.939784	TTATACTCATGAGCGTATGGAGTAT	57.060	36.000	22.83	18.27	36.51	2.12
2589	3671	8.031277	ACTCGTAAGTCGTTGGAGTAATTAATT	58.969	33.333	5.89	5.89	36.28	1.40
2590	3672	8.176814	TCGTAAGTCGTTGGAGTAATTAATTG	57.823	34.615	11.05	0.00	40.80	2.32
2615	3699	3.097614	TGTGCCCTAGTTTAGACTCCTC	58.902	50.000	0.00	0.00	37.33	3.71
2664	3799	0.895530	CCCCAGCTTAGACTCGTGAA	59.104	55.000	0.00	0.00	0.00	3.18
2675	3810	4.232188	AGACTCGTGAAGGTATGGAGTA	57.768	45.455	0.00	0.00	38.03	2.59
2676	3811	3.946558	AGACTCGTGAAGGTATGGAGTAC	59.053	47.826	0.00	0.00	38.03	2.73
2677	3812	3.693085	GACTCGTGAAGGTATGGAGTACA	59.307	47.826	0.00	0.00	38.03	2.90
2678	3813	3.442977	ACTCGTGAAGGTATGGAGTACAC	59.557	47.826	0.00	0.00	36.28	2.90
2715	3851	7.490079	TCGCATCACAGTTTATAATCGTAAGTT	59.510	33.333	0.00	0.00	39.48	2.66
2722	3858	8.932791	ACAGTTTATAATCGTAAGTTGTTGGAG	58.067	33.333	0.00	0.00	39.48	3.86
2723	3859	8.932791	CAGTTTATAATCGTAAGTTGTTGGAGT	58.067	33.333	0.00	0.00	39.48	3.85
2730	3866	6.548441	TCGTAAGTTGTTGGAGTATTTTGG	57.452	37.500	0.00	0.00	39.48	3.28
2731	3867	6.289834	TCGTAAGTTGTTGGAGTATTTTGGA	58.710	36.000	0.00	0.00	39.48	3.53
2732	3868	6.938030	TCGTAAGTTGTTGGAGTATTTTGGAT	59.062	34.615	0.00	0.00	39.48	3.41
2733	3869	7.446013	TCGTAAGTTGTTGGAGTATTTTGGATT	59.554	33.333	0.00	0.00	39.48	3.01
2734	3870	8.723311	CGTAAGTTGTTGGAGTATTTTGGATTA	58.277	33.333	0.00	0.00	0.00	1.75
2761	3897	5.968528	TTTTTGGCATCACGGTTTATACT	57.031	34.783	0.00	0.00	0.00	2.12
2762	3898	5.554822	TTTTGGCATCACGGTTTATACTC	57.445	39.130	0.00	0.00	0.00	2.59
2763	3899	2.816689	TGGCATCACGGTTTATACTCG	58.183	47.619	0.00	0.00	0.00	4.18
2764	3900	2.166870	TGGCATCACGGTTTATACTCGT	59.833	45.455	0.00	0.00	37.64	4.18
2765	3901	3.380954	TGGCATCACGGTTTATACTCGTA	59.619	43.478	0.00	0.00	35.23	3.43
2766	3902	4.142204	TGGCATCACGGTTTATACTCGTAA	60.142	41.667	0.00	0.00	35.23	3.18
2767	3903	4.443394	GGCATCACGGTTTATACTCGTAAG	59.557	45.833	0.00	0.00	35.23	2.34
2768	3904	5.039333	GCATCACGGTTTATACTCGTAAGT	58.961	41.667	0.00	0.00	39.66	2.24
2769	3905	5.517770	GCATCACGGTTTATACTCGTAAGTT	59.482	40.000	0.00	0.00	36.92	2.66
2770	3906	6.507456	GCATCACGGTTTATACTCGTAAGTTG	60.507	42.308	0.00	0.00	36.92	3.16
2771	3907	6.012658	TCACGGTTTATACTCGTAAGTTGT	57.987	37.500	0.00	0.00	36.92	3.32
2772	3908	6.446318	TCACGGTTTATACTCGTAAGTTGTT	58.554	36.000	0.00	0.00	36.92	2.83
2773	3909	6.363088	TCACGGTTTATACTCGTAAGTTGTTG	59.637	38.462	0.00	0.00	36.92	3.33
2774	3910	5.634859	ACGGTTTATACTCGTAAGTTGTTGG	59.365	40.000	0.00	0.00	36.92	3.77
2775	3911	5.863397	CGGTTTATACTCGTAAGTTGTTGGA	59.137	40.000	0.00	0.00	36.92	3.53

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	53	7.669089	TTCCCTTTCACTTTGTCCTTAAATT	57.331	32.000	0.00	0.00	0.00	1.82
391	394	0.175989	TGTGTACACGCTGACCAACA	59.824	50.000	20.61	0.00	0.00	3.33
437	440	4.732784	AGCGTAACAAATGCAACCAATAG	58.267	39.130	0.00	0.00	43.05	1.73
445	448	0.793861	GTCCGAGCGTAACAAATGCA	59.206	50.000	0.00	0.00	43.05	3.96
478	481	3.202906	TGCGCATCATTAAGAAGGTACC	58.797	45.455	5.66	2.73	0.00	3.34
787	790	5.768980	AGGTTCATCATTTGAGAGGAAGA	57.231	39.130	0.00	0.00	38.77	2.87
861	872	5.482006	AGAAAGGAGCAAACAAAATATGGC	58.518	37.500	0.00	0.00	0.00	4.40
870	885	4.269183	TGAGACAAAGAAAGGAGCAAACA	58.731	39.130	0.00	0.00	0.00	2.83
913	930	7.974675	TCCTTAACATTTCGCTTCTTCTATTG	58.025	34.615	0.00	0.00	0.00	1.90
930	947	2.945008	GCATGTAGCAGCATCCTTAACA	59.055	45.455	0.00	0.00	44.79	2.41
944	961	4.944619	TGGACAGAATAGGAGCATGTAG	57.055	45.455	0.00	0.00	0.00	2.74
954	971	7.442364	TCAGTCAAAGTCTTTTGGACAGAATAG	59.558	37.037	14.79	2.60	46.72	1.73
956	973	6.122277	TCAGTCAAAGTCTTTTGGACAGAAT	58.878	36.000	14.79	0.00	46.72	2.40
990	1007	8.792830	AGCTATTTTCAGTCATGTAAGCTTTA	57.207	30.769	3.20	0.00	0.00	1.85
991	1008	7.609532	AGAGCTATTTTCAGTCATGTAAGCTTT	59.390	33.333	3.20	0.00	0.00	3.51
997	1014	7.394016	TCCAAAGAGCTATTTTCAGTCATGTA	58.606	34.615	2.96	0.00	0.00	2.29
1047	1064	4.098807	TCAACATCCATGGCATCAATCTTG	59.901	41.667	6.96	0.00	0.00	3.02
1149	2089	4.952071	ACCATGATCTATGTCTCCACTG	57.048	45.455	0.00	0.00	34.87	3.66
1445	2404	4.689612	AAGCTCAGTGGTAGAAGAAACA	57.310	40.909	0.00	0.00	0.00	2.83
1456	2415	3.748568	GGTCTCTACAAAAAGCTCAGTGG	59.251	47.826	0.00	0.00	0.00	4.00
1489	2448	3.785859	GGATGGCCCTCGTCAGCA	61.786	66.667	0.00	0.00	33.11	4.41
1529	2488	2.668280	GCGGCGTTGAGGTTCTGTC	61.668	63.158	9.37	0.00	0.00	3.51
1560	2519	4.281688	ACTTGGCAGCATCAAATAAACTGT	59.718	37.500	0.00	0.00	0.00	3.55
1590	2549	0.038618	GTGGCAATTCGGGGAACAAC	60.039	55.000	0.00	0.00	0.00	3.32
1900	2863	3.426829	GCTTCTTGGCTTCGGATTTCTTC	60.427	47.826	0.00	0.00	0.00	2.87
1904	2867	1.815003	CAGCTTCTTGGCTTCGGATTT	59.185	47.619	0.00	0.00	41.00	2.17
2127	3093	9.524106	CATTGTAAGCAATCATGTGTGAATAAT	57.476	29.630	0.00	0.00	42.91	1.28
2190	3156	5.201713	AGCTCATGCGCTAGTATAGAAAA	57.798	39.130	8.80	0.00	42.54	2.29
2407	3419	4.897025	ACTTACGAGTCTATACTGTGGC	57.103	45.455	0.00	0.00	35.56	5.01
2415	3427	8.289939	TCACTCCAATAAACTTACGAGTCTAT	57.710	34.615	0.00	0.00	34.21	1.98
2433	3445	3.003897	GTGGCGTAAACAAAATCACTCCA	59.996	43.478	0.00	0.00	0.00	3.86
2437	3449	3.959943	ACTGTGGCGTAAACAAAATCAC	58.040	40.909	0.00	0.00	0.00	3.06
2441	3453	7.261829	AGTATAAACTGTGGCGTAAACAAAA	57.738	32.000	0.00	0.00	33.57	2.44
2442	3454	6.346758	CGAGTATAAACTGTGGCGTAAACAAA	60.347	38.462	0.00	0.00	35.56	2.83
2445	3457	4.622740	ACGAGTATAAACTGTGGCGTAAAC	59.377	41.667	0.00	0.00	35.56	2.01
2450	3475	2.852413	CTCACGAGTATAAACTGTGGCG	59.148	50.000	0.00	0.00	35.56	5.69
2462	3487	5.242171	TGTCACTCCAATAAACTCACGAGTA	59.758	40.000	0.00	0.00	41.58	2.59
2469	3494	7.379529	CACACAAAATGTCACTCCAATAAACTC	59.620	37.037	0.00	0.00	40.64	3.01
2516	3598	8.768957	AGAAATCATCAATCATACTCCATACG	57.231	34.615	0.00	0.00	0.00	3.06
2527	3609	9.146984	GATGCAAAGAAAAGAAATCATCAATCA	57.853	29.630	0.00	0.00	31.94	2.57
2589	3671	5.043737	AGTCTAAACTAGGGCACAAAACA	57.956	39.130	0.00	0.00	32.59	2.83
2590	3672	4.454847	GGAGTCTAAACTAGGGCACAAAAC	59.545	45.833	0.00	0.00	35.28	2.43
2651	3786	4.641094	ACTCCATACCTTCACGAGTCTAAG	59.359	45.833	0.00	0.00	0.00	2.18
2690	3826	7.161829	ACTTACGATTATAAACTGTGATGCG	57.838	36.000	0.00	0.00	0.00	4.73
2706	3842	6.938030	TCCAAAATACTCCAACAACTTACGAT	59.062	34.615	0.00	0.00	0.00	3.73
2739	3875	5.391097	CGAGTATAAACCGTGATGCCAAAAA	60.391	40.000	0.00	0.00	0.00	1.94
2740	3876	4.093703	CGAGTATAAACCGTGATGCCAAAA	59.906	41.667	0.00	0.00	0.00	2.44
2741	3877	3.619483	CGAGTATAAACCGTGATGCCAAA	59.381	43.478	0.00	0.00	0.00	3.28
2742	3878	3.191669	CGAGTATAAACCGTGATGCCAA	58.808	45.455	0.00	0.00	0.00	4.52
2743	3879	2.166870	ACGAGTATAAACCGTGATGCCA	59.833	45.455	0.00	0.00	33.26	4.92
2744	3880	2.817901	ACGAGTATAAACCGTGATGCC	58.182	47.619	0.00	0.00	33.26	4.40
2745	3881	5.039333	ACTTACGAGTATAAACCGTGATGC	58.961	41.667	0.00	0.00	35.25	3.91
2746	3882	6.529125	ACAACTTACGAGTATAAACCGTGATG	59.471	38.462	0.00	0.00	34.21	3.07
2747	3883	6.624423	ACAACTTACGAGTATAAACCGTGAT	58.376	36.000	0.00	0.00	34.21	3.06
2748	3884	6.012658	ACAACTTACGAGTATAAACCGTGA	57.987	37.500	0.00	0.00	34.21	4.35
2749	3885	6.400303	CCAACAACTTACGAGTATAAACCGTG	60.400	42.308	0.00	0.00	34.21	4.94
2750	3886	5.634859	CCAACAACTTACGAGTATAAACCGT	59.365	40.000	0.00	0.00	34.21	4.83
2751	3887	5.863397	TCCAACAACTTACGAGTATAAACCG	59.137	40.000	0.00	0.00	34.21	4.44

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.