AutoCloner

Multiple sequence alignment - TraesCS1B01G060400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G060400	chr1B	100.000	4176	0	0	1	4176	43983034	43987209	0.000000e+00	7712
1	TraesCS1B01G060400	chr1B	97.878	3016	43	5	1173	4176	44000354	44003360	0.000000e+00	5195
2	TraesCS1B01G060400	chr1B	93.869	685	31	7	475	1157	43999516	44000191	0.000000e+00	1022
3	TraesCS1B01G060400	chr7D	93.935	676	38	3	3	677	219704820	219705493	0.000000e+00	1018
4	TraesCS1B01G060400	chr7D	93.363	678	41	3	1	677	186523128	186522454	0.000000e+00	1000
5	TraesCS1B01G060400	chr7D	92.000	125	9	1	664	787	426183474	426183598	1.540000e-39	174
6	TraesCS1B01G060400	chr7D	92.241	116	9	0	664	779	565400343	565400228	9.290000e-37	165
7	TraesCS1B01G060400	chr3D	93.363	678	43	2	1	677	6296187	6295511	0.000000e+00	1002
8	TraesCS1B01G060400	chr3D	92.751	676	39	5	6	677	386723504	386722835	0.000000e+00	968
9	TraesCS1B01G060400	chr3D	92.982	114	8	0	664	777	393557245	393557358	2.580000e-37	167
10	TraesCS1B01G060400	chr5B	93.215	678	44	2	1	677	54556904	54557580	0.000000e+00	996
11	TraesCS1B01G060400	chr4B	93.225	679	43	3	1	677	423353405	423354082	0.000000e+00	996
12	TraesCS1B01G060400	chr4D	92.701	685	36	11	1	677	506342049	506341371	0.000000e+00	976
13	TraesCS1B01G060400	chr4D	92.437	119	8	1	664	781	490100995	490101113	7.180000e-38	169
14	TraesCS1B01G060400	chr1D	92.805	681	38	6	1	677	448218830	448219503	0.000000e+00	976
15	TraesCS1B01G060400	chr1D	90.909	121	10	1	666	785	454401804	454401924	1.200000e-35	161
16	TraesCS1B01G060400	chr3A	92.593	675	48	2	1	674	488245815	488246488	0.000000e+00	968
17	TraesCS1B01G060400	chr3A	91.667	120	9	1	664	782	77528140	77528259	9.290000e-37	165
18	TraesCS1B01G060400	chr5D	93.913	115	7	0	664	778	375858339	375858225	1.540000e-39	174
19	TraesCS1B01G060400	chrUn	91.667	120	9	1	663	781	89764258	89764377	9.290000e-37	165
20	TraesCS1B01G060400	chr4A	91.525	118	10	0	664	781	657207541	657207424	3.340000e-36	163

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G060400	chr1B	43983034	43987209	4175	False	7712.0	7712	100.0000	1	4176	1	chr1B.!!$F1	4175
1	TraesCS1B01G060400	chr1B	43999516	44003360	3844	False	3108.5	5195	95.8735	475	4176	2	chr1B.!!$F2	3701
2	TraesCS1B01G060400	chr7D	219704820	219705493	673	False	1018.0	1018	93.9350	3	677	1	chr7D.!!$F1	674
3	TraesCS1B01G060400	chr7D	186522454	186523128	674	True	1000.0	1000	93.3630	1	677	1	chr7D.!!$R1	676
4	TraesCS1B01G060400	chr3D	6295511	6296187	676	True	1002.0	1002	93.3630	1	677	1	chr3D.!!$R1	676
5	TraesCS1B01G060400	chr3D	386722835	386723504	669	True	968.0	968	92.7510	6	677	1	chr3D.!!$R2	671
6	TraesCS1B01G060400	chr5B	54556904	54557580	676	False	996.0	996	93.2150	1	677	1	chr5B.!!$F1	676
7	TraesCS1B01G060400	chr4B	423353405	423354082	677	False	996.0	996	93.2250	1	677	1	chr4B.!!$F1	676
8	TraesCS1B01G060400	chr4D	506341371	506342049	678	True	976.0	976	92.7010	1	677	1	chr4D.!!$R1	676
9	TraesCS1B01G060400	chr1D	448218830	448219503	673	False	976.0	976	92.8050	1	677	1	chr1D.!!$F1	676
10	TraesCS1B01G060400	chr3A	488245815	488246488	673	False	968.0	968	92.5930	1	674	1	chr3A.!!$F2	673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	End Stability	Orientation
733	743	0.035458	CAGACTGGTTGGAGGTGGAC	59.965	60.0	0.00	4.02	F
963	974	0.161024	GTCACGCGTCCTTCTTTTCG	59.839	55.0	9.86	3.46	F
2248	2415	0.529378	GGGGTGAATGCTGCTCAAAG	59.471	55.0	0.00	2.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1581	1748	0.694771	TCCTGCCTTGCTCAGTGATT	59.305	50.000	0.00	2.57	R
2343	2510	1.171308	TTCGTAGTCGAGGTTCCTGG	58.829	55.000	46.81	4.45	R
3800	3970	2.333926	TGTGCAAACGTAAGAGATCCG	58.666	47.619	43.62	4.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	115	1.369692	CGTGTTCTGGGTGCAGGTA	59.630	57.895	0.00	0.00	0.00	3.08
272	273	0.107643	TCGGTCATGTGCAGGTTTCA	59.892	50.000	0.00	0.00	0.00	2.69
357	362	7.994334	AGGTGTTAGTGTTGAACTTTTATGGTA	59.006	33.333	0.00	0.00	40.56	3.25
378	383	2.343758	GGCGAGACTTGTGCTGGA	59.656	61.111	0.00	0.00	0.00	3.86
417	422	4.666253	GGAGCAGCACCCTGGCAA	62.666	66.667	0.00	0.00	39.54	4.52
437	442	1.673767	TGGAGCAGGGAAGAAGGATT	58.326	50.000	0.00	0.00	0.00	3.01
571	579	4.464947	TGTGTTGATCATGTGGTGGTAAA	58.535	39.130	0.00	0.00	0.00	2.01
591	599	1.203162	AGCCACCACATTTGAATGGGA	60.203	47.619	7.52	0.00	42.45	4.37
664	673	4.546570	GCTTACACCCTAAGCACAAAAAG	58.453	43.478	7.13	0.00	46.61	2.27
667	676	1.686052	CACCCTAAGCACAAAAAGGCA	59.314	47.619	0.00	0.00	0.00	4.75
668	677	1.963515	ACCCTAAGCACAAAAAGGCAG	59.036	47.619	0.00	0.00	0.00	4.85
713	723	7.202526	TGCATATAAGGCTGCATTTTAAGAAC	58.797	34.615	4.39	0.00	43.11	3.01
721	731	4.616835	GCTGCATTTTAAGAACCAGACTGG	60.617	45.833	20.45	20.45	45.02	4.00
731	741	1.376466	CCAGACTGGTTGGAGGTGG	59.624	63.158	13.84	0.00	37.96	4.61
732	742	1.127567	CCAGACTGGTTGGAGGTGGA	61.128	60.000	13.84	0.00	37.96	4.02
733	743	0.035458	CAGACTGGTTGGAGGTGGAC	59.965	60.000	0.00	0.00	0.00	4.02
742	752	2.418368	TGGAGGTGGACATACAATGC	57.582	50.000	0.00	0.00	0.00	3.56
778	789	1.169661	TGCAACCAAACACGCCCTAG	61.170	55.000	0.00	0.00	0.00	3.02
789	800	1.218316	CGCCCTAGTGTCTTGGGAC	59.782	63.158	17.64	9.44	46.83	4.46
845	856	1.465187	GCGTTCGCAAGGATAAACACC	60.465	52.381	12.33	0.00	38.47	4.16
846	857	1.801771	CGTTCGCAAGGATAAACACCA	59.198	47.619	0.00	0.00	38.47	4.17
923	934	2.339418	TGTGTCGCCCTTGTAATAACG	58.661	47.619	0.00	0.00	0.00	3.18
928	939	2.004017	CGCCCTTGTAATAACGAAGCA	58.996	47.619	0.00	0.00	0.00	3.91
963	974	0.161024	GTCACGCGTCCTTCTTTTCG	59.839	55.000	9.86	0.00	0.00	3.46
1017	1028	1.227380	GATGTCGCATTCTCGGCCT	60.227	57.895	0.00	0.00	32.31	5.19
1121	1132	2.669849	CTCCTGCTCTTGCTGCCT	59.330	61.111	0.00	0.00	40.48	4.75
1157	1168	1.134128	TGCTCAGTTGCTCTGTTTCCA	60.134	47.619	8.75	1.90	43.97	3.53
1159	1170	2.095364	GCTCAGTTGCTCTGTTTCCATG	60.095	50.000	8.75	0.00	43.97	3.66
1160	1171	2.486982	CTCAGTTGCTCTGTTTCCATGG	59.513	50.000	4.97	4.97	43.97	3.66
1161	1172	2.106338	TCAGTTGCTCTGTTTCCATGGA	59.894	45.455	11.44	11.44	43.97	3.41
1163	1174	3.087031	AGTTGCTCTGTTTCCATGGATG	58.913	45.455	17.06	6.74	0.00	3.51
1164	1175	1.466856	TGCTCTGTTTCCATGGATGC	58.533	50.000	17.06	12.00	0.00	3.91
1165	1176	1.005097	TGCTCTGTTTCCATGGATGCT	59.995	47.619	17.06	0.00	0.00	3.79
1166	1177	1.674962	GCTCTGTTTCCATGGATGCTC	59.325	52.381	17.06	7.12	0.00	4.26
1168	1179	2.943690	CTCTGTTTCCATGGATGCTCTG	59.056	50.000	17.06	10.18	0.00	3.35
1170	1181	2.422479	CTGTTTCCATGGATGCTCTGTG	59.578	50.000	17.06	0.00	0.00	3.66
1171	1182	2.040145	TGTTTCCATGGATGCTCTGTGA	59.960	45.455	17.06	0.00	0.00	3.58
1242	1400	7.621428	TCTCATCTGATTGGATTTTTCTGTC	57.379	36.000	0.00	0.00	0.00	3.51
1291	1449	7.620880	TGAAATCTTCGAAGGAATAGGAAGAA	58.379	34.615	24.37	1.27	45.49	2.52
1569	1736	0.825010	ACCAAAGTTCCCAGCTGCAG	60.825	55.000	10.11	10.11	0.00	4.41
1581	1748	3.465990	GCTGCAGCTCCATGAACTA	57.534	52.632	31.33	0.00	38.21	2.24
1661	1828	6.167685	GGGAACAGTTAAACAACCAACTTTT	58.832	36.000	0.00	0.00	32.72	2.27
1733	1900	2.498078	TCCGGTTGGCAGAAAAACTTTT	59.502	40.909	0.00	0.00	34.14	2.27
2120	2287	2.634982	TTCCTTTCGCATGAATGTGC	57.365	45.000	0.00	0.00	41.65	4.57
2139	2306	4.081972	TGTGCGGTGCCAAATTATGTTATT	60.082	37.500	0.00	0.00	0.00	1.40
2202	2369	4.131596	TGCACTTCAGTAAAACCTGGTAC	58.868	43.478	0.00	0.00	33.14	3.34
2203	2370	4.141574	TGCACTTCAGTAAAACCTGGTACT	60.142	41.667	0.00	0.00	33.14	2.73
2241	2408	3.899052	ATGAAATTGGGGTGAATGCTG	57.101	42.857	0.00	0.00	0.00	4.41
2248	2415	0.529378	GGGGTGAATGCTGCTCAAAG	59.471	55.000	0.00	0.00	0.00	2.77
2471	2639	6.992715	AGCACTTTCTGACTATGTTTGTAAGT	59.007	34.615	0.00	0.00	0.00	2.24
2502	2670	7.448161	TGTTTGCAGAAGATAGAAAATTCTGGA	59.552	33.333	14.11	9.65	46.43	3.86
2504	2672	6.950842	TGCAGAAGATAGAAAATTCTGGAGA	58.049	36.000	14.11	0.00	46.43	3.71
2505	2673	6.820656	TGCAGAAGATAGAAAATTCTGGAGAC	59.179	38.462	14.11	1.04	46.43	3.36
2506	2674	6.259829	GCAGAAGATAGAAAATTCTGGAGACC	59.740	42.308	14.11	0.00	46.43	3.85
2507	2675	7.334090	CAGAAGATAGAAAATTCTGGAGACCA	58.666	38.462	5.93	0.00	43.94	4.02
2508	2676	7.992033	CAGAAGATAGAAAATTCTGGAGACCAT	59.008	37.037	5.93	0.00	43.94	3.55
2526	2694	6.418101	AGACCATGTTCAGCAATACAGTAAT	58.582	36.000	0.00	0.00	0.00	1.89
2536	2704	3.560068	GCAATACAGTAATCCCAGGTTCG	59.440	47.826	0.00	0.00	0.00	3.95
2589	2757	7.489113	GTCAAATCTTTGTGCTATTACAATGGG	59.511	37.037	2.82	0.00	40.00	4.00
2593	2761	5.822519	TCTTTGTGCTATTACAATGGGCTAG	59.177	40.000	0.00	0.00	40.00	3.42
2611	2779	4.083271	GGCTAGCGGATTTTATTTAGGCAG	60.083	45.833	9.00	0.00	34.83	4.85
2701	2869	8.067784	GGCGAACATAGAAAATATCGAATGAAA	58.932	33.333	0.00	0.00	33.23	2.69
2728	2896	1.382522	ACAAATGCTGCGATACCCAG	58.617	50.000	0.00	0.00	0.00	4.45
2844	3012	8.934023	TTATCCTCAATTCAAGTTAAGGTTGT	57.066	30.769	0.00	0.00	0.00	3.32
2954	3122	6.040391	TGGAAAACCACCATTACTTTCTGAAG	59.960	38.462	0.00	0.00	34.33	3.02
3013	3181	6.375455	ACATCTATGGTGTCAAATTCCAAGAC	59.625	38.462	0.00	0.00	34.80	3.01
3800	3970	1.027357	CATGGTATCAAGCAGGTGGC	58.973	55.000	0.00	0.00	45.30	5.01
3812	3982	0.249073	CAGGTGGCGGATCTCTTACG	60.249	60.000	0.00	0.00	0.00	3.18
4131	4301	0.827507	GCAACCAAGTCCCACACCAT	60.828	55.000	0.00	0.00	0.00	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	115	1.371558	GTGCCCCTCGAAGTTCTGT	59.628	57.895	0.56	0.00	0.00	3.41
292	293	1.019673	GCATGCTCGATGTCACCAAT	58.980	50.000	11.37	0.00	34.14	3.16
357	362	0.952497	CAGCACAAGTCTCGCCACAT	60.952	55.000	0.00	0.00	0.00	3.21
378	383	5.306678	TCCTGGCCAAAATATGAACAAGTTT	59.693	36.000	7.01	0.00	0.00	2.66
417	422	1.904440	ATCCTTCTTCCCTGCTCCAT	58.096	50.000	0.00	0.00	0.00	3.41
437	442	3.995636	AGTCTAGATTAACAGCAGGGGA	58.004	45.455	0.00	0.00	0.00	4.81
571	579	1.203162	TCCCATTCAAATGTGGTGGCT	60.203	47.619	2.31	0.00	34.60	4.75
591	599	2.682856	ACAACGTTTGTGTTCTGCTCAT	59.317	40.909	0.00	0.00	43.48	2.90
667	676	0.963962	CAGATGCAACCTGTTTGGCT	59.036	50.000	10.34	0.00	40.22	4.75
668	677	0.668401	GCAGATGCAACCTGTTTGGC	60.668	55.000	17.30	3.15	41.59	4.52
695	705	4.021981	GTCTGGTTCTTAAAATGCAGCCTT	60.022	41.667	0.00	0.00	0.00	4.35
713	723	1.127567	TCCACCTCCAACCAGTCTGG	61.128	60.000	17.88	17.88	45.02	3.86
721	731	2.423538	GCATTGTATGTCCACCTCCAAC	59.576	50.000	0.00	0.00	0.00	3.77
722	732	2.040947	TGCATTGTATGTCCACCTCCAA	59.959	45.455	0.00	0.00	0.00	3.53
725	735	3.347216	AGTTGCATTGTATGTCCACCTC	58.653	45.455	0.00	0.00	0.00	3.85
728	738	4.695455	ACAGTAGTTGCATTGTATGTCCAC	59.305	41.667	0.00	0.00	0.00	4.02
729	739	4.905429	ACAGTAGTTGCATTGTATGTCCA	58.095	39.130	0.00	0.00	0.00	4.02
730	740	5.880054	AACAGTAGTTGCATTGTATGTCC	57.120	39.130	0.00	0.00	36.39	4.02
760	770	1.170290	ACTAGGGCGTGTTTGGTTGC	61.170	55.000	0.00	0.00	0.00	4.17
789	800	0.165944	GCGTGTTTCGACATCAAGGG	59.834	55.000	0.00	0.00	42.86	3.95
827	838	3.252458	ACTTGGTGTTTATCCTTGCGAAC	59.748	43.478	0.00	0.00	0.00	3.95
845	856	2.932614	CTCGGCAGAACAGGAATACTTG	59.067	50.000	0.00	0.00	0.00	3.16
846	857	2.678190	GCTCGGCAGAACAGGAATACTT	60.678	50.000	0.00	0.00	0.00	2.24
923	934	3.119137	ACAAGTGGACAGGTTTTTGCTTC	60.119	43.478	0.00	0.00	0.00	3.86
928	939	2.422127	CGTGACAAGTGGACAGGTTTTT	59.578	45.455	0.00	0.00	0.00	1.94
963	974	1.754226	CTAGGCAGAAGACCAGAGGAC	59.246	57.143	0.00	0.00	0.00	3.85
1056	1067	3.467226	GATCCCCGCCGGTCTTCA	61.467	66.667	1.90	0.00	0.00	3.02
1096	1107	3.625348	AAGAGCAGGAGCAGCAGCC	62.625	63.158	0.00	0.00	45.49	4.85
1157	1168	1.817087	ATCCCTCACAGAGCATCCAT	58.183	50.000	0.00	0.00	33.66	3.41
1159	1170	4.363991	AAATATCCCTCACAGAGCATCC	57.636	45.455	0.00	0.00	33.66	3.51
1160	1171	4.450419	CGAAAATATCCCTCACAGAGCATC	59.550	45.833	0.00	0.00	0.00	3.91
1161	1172	4.141620	ACGAAAATATCCCTCACAGAGCAT	60.142	41.667	0.00	0.00	0.00	3.79
1163	1174	3.557595	CACGAAAATATCCCTCACAGAGC	59.442	47.826	0.00	0.00	0.00	4.09
1164	1175	4.122776	CCACGAAAATATCCCTCACAGAG	58.877	47.826	0.00	0.00	0.00	3.35
1165	1176	3.772572	TCCACGAAAATATCCCTCACAGA	59.227	43.478	0.00	0.00	0.00	3.41
1166	1177	4.137116	TCCACGAAAATATCCCTCACAG	57.863	45.455	0.00	0.00	0.00	3.66
1168	1179	3.251004	GCATCCACGAAAATATCCCTCAC	59.749	47.826	0.00	0.00	0.00	3.51
1170	1181	3.499918	CAGCATCCACGAAAATATCCCTC	59.500	47.826	0.00	0.00	0.00	4.30
1171	1182	3.136443	TCAGCATCCACGAAAATATCCCT	59.864	43.478	0.00	0.00	0.00	4.20
1235	1393	5.895636	AAAATATGCACATCCGACAGAAA	57.104	34.783	0.00	0.00	0.00	2.52
1242	1400	9.299963	TCAAGAAAATAAAAATATGCACATCCG	57.700	29.630	0.00	0.00	0.00	4.18
1291	1449	4.166725	TCCAATTAGATGGGAATGCTCTGT	59.833	41.667	0.00	0.00	41.05	3.41
1349	1507	5.363979	CATGAATGCTCTCATCTTCCATG	57.636	43.478	0.00	0.00	33.66	3.66
1454	1612	7.094032	CCTTCTTGAGTATTTCATTTTGGCTCT	60.094	37.037	0.00	0.00	35.27	4.09
1545	1712	3.006859	GCAGCTGGGAACTTTGGTAAAAT	59.993	43.478	17.12	0.00	0.00	1.82
1569	1736	3.559242	GCTCAGTGATTAGTTCATGGAGC	59.441	47.826	12.48	12.48	46.59	4.70
1581	1748	0.694771	TCCTGCCTTGCTCAGTGATT	59.305	50.000	0.00	0.00	0.00	2.57
1661	1828	5.527951	TGAACATGAAAGTAAACGCTTACCA	59.472	36.000	0.00	0.00	38.59	3.25
1850	2017	6.543831	GGCTTTACTGTCTCATAATGATTGGT	59.456	38.462	0.00	0.00	0.00	3.67
2070	2237	8.543774	AGCAGAAGAAATAAGTTCCAATAGAGA	58.456	33.333	0.00	0.00	36.86	3.10
2120	2287	5.645624	TGACAATAACATAATTTGGCACCG	58.354	37.500	0.00	0.00	33.56	4.94
2139	2306	4.510571	CAGATCAATCACACCATCTGACA	58.489	43.478	2.19	0.00	43.39	3.58
2202	2369	1.444836	TTAACGAAACCATGGGCGAG	58.555	50.000	24.44	12.86	0.00	5.03
2203	2370	1.740585	CATTAACGAAACCATGGGCGA	59.259	47.619	24.44	8.14	0.00	5.54
2288	2455	9.811995	TTGATTCCATCAAAATCATTCTGATTC	57.188	29.630	3.03	0.00	42.15	2.52
2306	2473	8.579850	AGAAACTAAATATGCACTTGATTCCA	57.420	30.769	0.00	0.00	0.00	3.53
2343	2510	1.171308	TTCGTAGTCGAGGTTCCTGG	58.829	55.000	0.00	0.00	46.81	4.45
2403	2571	5.252547	TGTGATGGCTAGCTGTTCAAAATA	58.747	37.500	15.72	1.37	0.00	1.40
2456	2624	8.743099	GCAAACAAAAGACTTACAAACATAGTC	58.257	33.333	0.00	0.00	38.82	2.59
2499	2667	2.885135	ATTGCTGAACATGGTCTCCA	57.115	45.000	12.94	6.07	38.19	3.86
2500	2668	3.609853	TGTATTGCTGAACATGGTCTCC	58.390	45.455	12.94	3.31	0.00	3.71
2502	2670	4.292186	ACTGTATTGCTGAACATGGTCT	57.708	40.909	12.94	0.00	0.00	3.85
2503	2671	6.238484	GGATTACTGTATTGCTGAACATGGTC	60.238	42.308	2.98	2.98	0.00	4.02
2504	2672	5.590259	GGATTACTGTATTGCTGAACATGGT	59.410	40.000	0.00	0.00	0.00	3.55
2505	2673	5.009010	GGGATTACTGTATTGCTGAACATGG	59.991	44.000	0.00	0.00	0.00	3.66
2506	2674	5.589855	TGGGATTACTGTATTGCTGAACATG	59.410	40.000	0.00	0.00	0.00	3.21
2507	2675	5.754782	TGGGATTACTGTATTGCTGAACAT	58.245	37.500	2.13	0.00	0.00	2.71
2508	2676	5.172687	TGGGATTACTGTATTGCTGAACA	57.827	39.130	2.13	0.00	0.00	3.18
2589	2757	4.515567	ACTGCCTAAATAAAATCCGCTAGC	59.484	41.667	4.06	4.06	0.00	3.42
2593	2761	9.908152	AATTATAACTGCCTAAATAAAATCCGC	57.092	29.630	0.00	0.00	0.00	5.54
2728	2896	4.740695	GCCATTATGTCTTGTCTCGAGTAC	59.259	45.833	13.13	9.92	0.00	2.73
2844	3012	2.702592	AAACTCACCGTGAAGGACAA	57.297	45.000	2.19	0.00	45.00	3.18
3800	3970	2.333926	TGTGCAAACGTAAGAGATCCG	58.666	47.619	0.00	0.00	43.62	4.18
3812	3982	3.071479	TCCGGATTCTTACTGTGCAAAC	58.929	45.455	0.00	0.00	0.00	2.93
4131	4301	6.775708	AGGATGCAAGTGTAAACCTACTTTA	58.224	36.000	0.00	0.00	35.08	1.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.