Multiple sequence alignment - TraesCS1B01G059800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G059800 chr1B 100.000 5393 0 0 1 5393 42346753 42352145 0.000000e+00 9960.0
1 TraesCS1B01G059800 chr1B 79.130 115 17 6 304 415 489248759 489248649 7.490000e-09 73.1
2 TraesCS1B01G059800 chr1A 89.470 2754 198 41 1755 4476 27754551 27757244 0.000000e+00 3395.0
3 TraesCS1B01G059800 chr1A 92.175 639 45 4 4473 5110 27757288 27757922 0.000000e+00 898.0
4 TraesCS1B01G059800 chr1A 84.440 482 34 19 1174 1653 27753411 27753853 2.310000e-118 436.0
5 TraesCS1B01G059800 chr1A 89.540 239 21 4 822 1058 27752603 27752839 3.160000e-77 300.0
6 TraesCS1B01G059800 chr1A 90.000 150 13 2 5111 5258 27929266 27929415 5.510000e-45 193.0
7 TraesCS1B01G059800 chr1A 90.083 121 10 2 5274 5393 27929366 27929485 7.230000e-34 156.0
8 TraesCS1B01G059800 chr1A 85.263 95 9 4 1560 1654 27753890 27753979 5.750000e-15 93.5
9 TraesCS1B01G059800 chr1A 96.774 31 1 0 300 330 519848061 519848091 1.000000e-02 52.8
10 TraesCS1B01G059800 chr1D 88.606 2791 183 48 1730 4476 26701769 26704468 0.000000e+00 3267.0
11 TraesCS1B01G059800 chr1D 93.081 925 49 6 4473 5393 26704512 26705425 0.000000e+00 1339.0
12 TraesCS1B01G059800 chr1D 85.650 446 52 9 393 835 26699827 26700263 4.920000e-125 459.0
13 TraesCS1B01G059800 chr1D 86.506 415 20 17 1127 1537 26701111 26701493 1.800000e-114 424.0
14 TraesCS1B01G059800 chr1D 90.833 240 12 5 822 1058 26700276 26700508 4.060000e-81 313.0
15 TraesCS1B01G059800 chr1D 80.833 120 15 8 304 419 365726787 365726672 2.680000e-13 87.9
16 TraesCS1B01G059800 chr1D 100.000 28 0 0 303 330 119004828 119004855 1.000000e-02 52.8
17 TraesCS1B01G059800 chr6A 89.326 178 12 4 2633 2810 573643141 573643311 3.270000e-52 217.0
18 TraesCS1B01G059800 chr6A 89.326 178 12 4 2633 2810 574215084 574214914 3.270000e-52 217.0
19 TraesCS1B01G059800 chr6A 100.000 30 0 0 301 330 54336943 54336972 7.550000e-04 56.5
20 TraesCS1B01G059800 chr6A 100.000 29 0 0 302 330 573182702 573182730 3.000000e-03 54.7
21 TraesCS1B01G059800 chr6D 85.238 210 20 3 2695 2900 428980679 428980881 7.080000e-49 206.0
22 TraesCS1B01G059800 chr3D 73.597 481 103 13 4475 4951 234628089 234627629 4.320000e-36 163.0
23 TraesCS1B01G059800 chrUn 83.036 112 19 0 4475 4586 34357904 34358015 9.560000e-18 102.0
24 TraesCS1B01G059800 chrUn 82.203 118 21 0 4475 4592 269480908 269480791 9.560000e-18 102.0
25 TraesCS1B01G059800 chr7A 77.848 158 29 4 4679 4834 483964214 483964367 5.750000e-15 93.5
26 TraesCS1B01G059800 chr2A 74.208 221 48 7 4735 4951 120313997 120313782 3.460000e-12 84.2
27 TraesCS1B01G059800 chr3B 100.000 30 0 0 301 330 396725859 396725888 7.550000e-04 56.5
28 TraesCS1B01G059800 chr6B 100.000 29 0 0 302 330 498975906 498975878 3.000000e-03 54.7
29 TraesCS1B01G059800 chr4B 100.000 28 0 0 303 330 300885197 300885170 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G059800 chr1B 42346753 42352145 5392 False 9960.0 9960 100.0000 1 5393 1 chr1B.!!$F1 5392
1 TraesCS1B01G059800 chr1A 27752603 27757922 5319 False 1024.5 3395 88.1776 822 5110 5 chr1A.!!$F2 4288
2 TraesCS1B01G059800 chr1D 26699827 26705425 5598 False 1160.4 3267 88.9352 393 5393 5 chr1D.!!$F2 5000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.034186 CATGGTAGGGTGTGGCACAT 60.034 55.0 24.95 10.70 44.52 3.21 F
881 911 0.036010 ACCGAAATGAGCCCTCACTG 60.036 55.0 0.00 0.00 43.11 3.66 F
950 980 0.038166 CCAAAACTAGGGCCTGAGCA 59.962 55.0 18.53 0.00 42.56 4.26 F
1296 1870 0.463295 CGAGGTGGTCCGTCTAGCTA 60.463 60.0 0.00 0.00 35.59 3.32 F
1443 2017 1.053424 TCGGGTATGCATAACCTCCC 58.947 55.0 32.78 24.49 38.00 4.30 F
3351 4592 1.035139 CCAACACTCTTTGCCTTGCT 58.965 50.0 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 2536 1.079405 GTCAACGGCGGGAGATCAA 60.079 57.895 13.24 0.0 0.00 2.57 R
2077 3284 1.387756 GTGCTGCATTGAAAACATCGC 59.612 47.619 5.27 0.0 0.00 4.58 R
2078 3285 1.987770 GGTGCTGCATTGAAAACATCG 59.012 47.619 5.27 0.0 0.00 3.84 R
3113 4346 0.249155 TCGACCACTCGAACCACAAC 60.249 55.000 0.00 0.0 46.04 3.32 R
3372 4613 0.755327 AAACCAGTGAACCTGCCACC 60.755 55.000 0.00 0.0 40.06 4.61 R
4647 5960 0.682209 ACCATGCATCTTCCTGTGGC 60.682 55.000 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.691049 TTCACTTTTTCAGGAAGCACG 57.309 42.857 0.00 0.00 0.00 5.34
21 22 1.333619 TCACTTTTTCAGGAAGCACGC 59.666 47.619 0.00 0.00 0.00 5.34
22 23 1.065401 CACTTTTTCAGGAAGCACGCA 59.935 47.619 0.00 0.00 0.00 5.24
23 24 1.334869 ACTTTTTCAGGAAGCACGCAG 59.665 47.619 0.00 0.00 0.00 5.18
24 25 1.603802 CTTTTTCAGGAAGCACGCAGA 59.396 47.619 0.00 0.00 0.00 4.26
25 26 1.674359 TTTTCAGGAAGCACGCAGAA 58.326 45.000 0.00 0.00 0.00 3.02
26 27 1.229428 TTTCAGGAAGCACGCAGAAG 58.771 50.000 0.00 0.00 0.00 2.85
27 28 1.230635 TTCAGGAAGCACGCAGAAGC 61.231 55.000 0.00 0.00 37.42 3.86
28 29 1.962822 CAGGAAGCACGCAGAAGCA 60.963 57.895 0.00 0.00 42.27 3.91
29 30 1.963338 AGGAAGCACGCAGAAGCAC 60.963 57.895 0.00 0.00 42.27 4.40
30 31 2.253758 GGAAGCACGCAGAAGCACA 61.254 57.895 0.00 0.00 42.27 4.57
31 32 1.648720 GAAGCACGCAGAAGCACAA 59.351 52.632 0.00 0.00 42.27 3.33
32 33 0.658536 GAAGCACGCAGAAGCACAAC 60.659 55.000 0.00 0.00 42.27 3.32
33 34 1.097547 AAGCACGCAGAAGCACAACT 61.098 50.000 0.00 0.00 42.27 3.16
34 35 0.249868 AGCACGCAGAAGCACAACTA 60.250 50.000 0.00 0.00 42.27 2.24
35 36 0.798776 GCACGCAGAAGCACAACTAT 59.201 50.000 0.00 0.00 42.27 2.12
36 37 1.464687 GCACGCAGAAGCACAACTATG 60.465 52.381 0.00 0.00 42.27 2.23
37 38 1.800586 CACGCAGAAGCACAACTATGT 59.199 47.619 0.00 0.00 42.27 2.29
38 39 2.224079 CACGCAGAAGCACAACTATGTT 59.776 45.455 0.00 0.00 42.27 2.71
39 40 2.878406 ACGCAGAAGCACAACTATGTTT 59.122 40.909 0.00 0.00 42.27 2.83
40 41 3.058914 ACGCAGAAGCACAACTATGTTTC 60.059 43.478 0.00 0.00 42.27 2.78
41 42 3.058983 CGCAGAAGCACAACTATGTTTCA 60.059 43.478 5.36 0.00 40.98 2.69
42 43 4.222114 GCAGAAGCACAACTATGTTTCAC 58.778 43.478 5.36 0.00 40.98 3.18
43 44 4.261155 GCAGAAGCACAACTATGTTTCACA 60.261 41.667 5.36 0.00 40.98 3.58
44 45 5.207768 CAGAAGCACAACTATGTTTCACAC 58.792 41.667 5.36 0.00 40.98 3.82
45 46 5.008019 CAGAAGCACAACTATGTTTCACACT 59.992 40.000 5.36 0.00 40.98 3.55
46 47 6.202762 CAGAAGCACAACTATGTTTCACACTA 59.797 38.462 5.36 0.00 40.98 2.74
47 48 6.765989 AGAAGCACAACTATGTTTCACACTAA 59.234 34.615 5.36 0.00 40.98 2.24
48 49 6.545504 AGCACAACTATGTTTCACACTAAG 57.454 37.500 0.00 0.00 37.82 2.18
49 50 5.049405 AGCACAACTATGTTTCACACTAAGC 60.049 40.000 0.00 0.00 37.82 3.09
50 51 5.277779 GCACAACTATGTTTCACACTAAGCA 60.278 40.000 0.00 0.00 37.82 3.91
51 52 6.136071 CACAACTATGTTTCACACTAAGCAC 58.864 40.000 0.00 0.00 37.82 4.40
52 53 5.820423 ACAACTATGTTTCACACTAAGCACA 59.180 36.000 0.00 0.00 35.91 4.57
53 54 6.317642 ACAACTATGTTTCACACTAAGCACAA 59.682 34.615 0.00 0.00 35.91 3.33
54 55 6.300354 ACTATGTTTCACACTAAGCACAAC 57.700 37.500 0.00 0.00 0.00 3.32
55 56 6.055588 ACTATGTTTCACACTAAGCACAACT 58.944 36.000 0.00 0.00 0.00 3.16
56 57 4.614555 TGTTTCACACTAAGCACAACTG 57.385 40.909 0.00 0.00 0.00 3.16
57 58 4.006989 TGTTTCACACTAAGCACAACTGT 58.993 39.130 0.00 0.00 0.00 3.55
62 63 4.457603 TCACACTAAGCACAACTGTGTTTT 59.542 37.500 15.67 10.77 45.08 2.43
63 64 5.048364 TCACACTAAGCACAACTGTGTTTTT 60.048 36.000 15.67 8.73 45.08 1.94
64 65 5.286082 CACACTAAGCACAACTGTGTTTTTC 59.714 40.000 15.67 0.00 45.08 2.29
65 66 5.048364 ACACTAAGCACAACTGTGTTTTTCA 60.048 36.000 15.67 0.00 45.08 2.69
66 67 5.512788 CACTAAGCACAACTGTGTTTTTCAG 59.487 40.000 15.67 10.48 45.08 3.02
67 68 3.253230 AAGCACAACTGTGTTTTTCAGC 58.747 40.909 11.31 0.00 45.08 4.26
68 69 4.217466 AAGCACAACTGTGTTTTTCAGCG 61.217 43.478 11.31 0.00 45.08 5.18
69 70 2.862512 CACAACTGTGTTTTTCAGCGT 58.137 42.857 1.51 0.00 40.96 5.07
70 71 2.845967 CACAACTGTGTTTTTCAGCGTC 59.154 45.455 1.51 0.00 40.96 5.19
71 72 2.486203 ACAACTGTGTTTTTCAGCGTCA 59.514 40.909 0.00 0.00 32.58 4.35
72 73 2.825086 ACTGTGTTTTTCAGCGTCAC 57.175 45.000 0.00 0.00 36.50 3.67
73 74 1.062002 ACTGTGTTTTTCAGCGTCACG 59.938 47.619 0.00 0.00 36.50 4.35
74 75 1.062002 CTGTGTTTTTCAGCGTCACGT 59.938 47.619 0.00 0.00 32.55 4.49
75 76 1.201976 TGTGTTTTTCAGCGTCACGTG 60.202 47.619 9.94 9.94 32.55 4.49
76 77 0.375454 TGTTTTTCAGCGTCACGTGG 59.625 50.000 17.00 0.92 0.00 4.94
77 78 0.653636 GTTTTTCAGCGTCACGTGGA 59.346 50.000 17.00 0.96 0.00 4.02
78 79 1.062880 GTTTTTCAGCGTCACGTGGAA 59.937 47.619 17.00 7.91 0.00 3.53
79 80 0.934496 TTTTCAGCGTCACGTGGAAG 59.066 50.000 17.00 8.52 0.00 3.46
84 85 3.712655 CGTCACGTGGAAGCACAA 58.287 55.556 17.00 0.00 0.00 3.33
85 86 1.275657 CGTCACGTGGAAGCACAAC 59.724 57.895 17.00 2.52 0.00 3.32
86 87 1.151777 CGTCACGTGGAAGCACAACT 61.152 55.000 17.00 0.00 0.00 3.16
87 88 1.860676 GTCACGTGGAAGCACAACTA 58.139 50.000 17.00 0.00 0.00 2.24
88 89 2.413837 GTCACGTGGAAGCACAACTAT 58.586 47.619 17.00 0.00 0.00 2.12
89 90 3.581755 GTCACGTGGAAGCACAACTATA 58.418 45.455 17.00 0.00 0.00 1.31
90 91 3.367025 GTCACGTGGAAGCACAACTATAC 59.633 47.826 17.00 0.00 0.00 1.47
91 92 3.257375 TCACGTGGAAGCACAACTATACT 59.743 43.478 17.00 0.00 0.00 2.12
92 93 3.994392 CACGTGGAAGCACAACTATACTT 59.006 43.478 7.95 0.00 0.00 2.24
93 94 4.451096 CACGTGGAAGCACAACTATACTTT 59.549 41.667 7.95 0.00 0.00 2.66
94 95 5.049680 CACGTGGAAGCACAACTATACTTTT 60.050 40.000 7.95 0.00 0.00 2.27
95 96 5.178809 ACGTGGAAGCACAACTATACTTTTC 59.821 40.000 0.00 0.00 0.00 2.29
96 97 5.390567 CGTGGAAGCACAACTATACTTTTCC 60.391 44.000 0.00 0.00 34.77 3.13
97 98 5.472137 GTGGAAGCACAACTATACTTTTCCA 59.528 40.000 0.00 0.00 40.17 3.53
98 99 5.472137 TGGAAGCACAACTATACTTTTCCAC 59.528 40.000 0.00 0.00 38.24 4.02
99 100 5.472137 GGAAGCACAACTATACTTTTCCACA 59.528 40.000 0.00 0.00 34.44 4.17
100 101 5.941948 AGCACAACTATACTTTTCCACAC 57.058 39.130 0.00 0.00 0.00 3.82
101 102 4.451096 AGCACAACTATACTTTTCCACACG 59.549 41.667 0.00 0.00 0.00 4.49
102 103 4.449743 GCACAACTATACTTTTCCACACGA 59.550 41.667 0.00 0.00 0.00 4.35
103 104 5.614013 GCACAACTATACTTTTCCACACGAC 60.614 44.000 0.00 0.00 0.00 4.34
104 105 5.464057 CACAACTATACTTTTCCACACGACA 59.536 40.000 0.00 0.00 0.00 4.35
105 106 6.147164 CACAACTATACTTTTCCACACGACAT 59.853 38.462 0.00 0.00 0.00 3.06
106 107 6.147164 ACAACTATACTTTTCCACACGACATG 59.853 38.462 0.00 0.00 0.00 3.21
107 108 4.630069 ACTATACTTTTCCACACGACATGC 59.370 41.667 0.00 0.00 0.00 4.06
108 109 1.967319 ACTTTTCCACACGACATGCT 58.033 45.000 0.00 0.00 0.00 3.79
109 110 2.297701 ACTTTTCCACACGACATGCTT 58.702 42.857 0.00 0.00 0.00 3.91
110 111 2.290641 ACTTTTCCACACGACATGCTTC 59.709 45.455 0.00 0.00 0.00 3.86
111 112 1.960417 TTTCCACACGACATGCTTCA 58.040 45.000 0.00 0.00 0.00 3.02
112 113 2.183478 TTCCACACGACATGCTTCAT 57.817 45.000 0.00 0.00 0.00 2.57
113 114 1.441738 TCCACACGACATGCTTCATG 58.558 50.000 5.35 5.35 46.18 3.07
114 115 1.001860 TCCACACGACATGCTTCATGA 59.998 47.619 13.11 0.00 43.81 3.07
115 116 1.395954 CCACACGACATGCTTCATGAG 59.604 52.381 13.11 8.94 43.81 2.90
116 117 2.340337 CACACGACATGCTTCATGAGA 58.660 47.619 13.11 0.00 43.81 3.27
117 118 2.347755 CACACGACATGCTTCATGAGAG 59.652 50.000 13.11 7.90 43.81 3.20
118 119 2.232208 ACACGACATGCTTCATGAGAGA 59.768 45.455 13.11 0.00 43.81 3.10
119 120 3.256558 CACGACATGCTTCATGAGAGAA 58.743 45.455 13.11 0.00 43.81 2.87
120 121 3.681417 CACGACATGCTTCATGAGAGAAA 59.319 43.478 13.11 0.00 43.81 2.52
121 122 3.681897 ACGACATGCTTCATGAGAGAAAC 59.318 43.478 13.11 0.00 43.81 2.78
122 123 3.681417 CGACATGCTTCATGAGAGAAACA 59.319 43.478 13.11 0.00 43.81 2.83
123 124 4.331992 CGACATGCTTCATGAGAGAAACAT 59.668 41.667 13.11 0.00 43.81 2.71
124 125 5.521372 CGACATGCTTCATGAGAGAAACATA 59.479 40.000 13.11 0.00 43.81 2.29
125 126 6.202379 CGACATGCTTCATGAGAGAAACATAT 59.798 38.462 13.11 0.00 43.81 1.78
126 127 7.254692 CGACATGCTTCATGAGAGAAACATATT 60.255 37.037 13.11 0.00 43.81 1.28
127 128 8.289939 ACATGCTTCATGAGAGAAACATATTT 57.710 30.769 13.11 0.00 43.81 1.40
128 129 8.746530 ACATGCTTCATGAGAGAAACATATTTT 58.253 29.630 13.11 0.00 43.81 1.82
129 130 9.582431 CATGCTTCATGAGAGAAACATATTTTT 57.418 29.630 0.00 0.00 43.81 1.94
209 210 2.593978 CCCCATGGGTGAGCTCAG 59.406 66.667 29.33 7.54 38.25 3.35
210 211 2.124403 CCCATGGGTGAGCTCAGC 60.124 66.667 32.87 32.87 43.14 4.26
211 212 2.672908 CCATGGGTGAGCTCAGCA 59.327 61.111 38.37 27.16 45.46 4.41
212 213 1.748122 CCATGGGTGAGCTCAGCAC 60.748 63.158 38.37 29.00 45.46 4.40
213 214 1.002990 CATGGGTGAGCTCAGCACA 60.003 57.895 38.37 32.53 45.46 4.57
214 215 1.002868 ATGGGTGAGCTCAGCACAC 60.003 57.895 38.37 25.37 46.32 3.82
217 218 3.543548 GTGAGCTCAGCACACGAC 58.456 61.111 18.89 0.00 39.85 4.34
218 219 1.300156 GTGAGCTCAGCACACGACA 60.300 57.895 18.89 0.00 39.85 4.35
219 220 1.300156 TGAGCTCAGCACACGACAC 60.300 57.895 13.74 0.00 0.00 3.67
220 221 1.300156 GAGCTCAGCACACGACACA 60.300 57.895 9.40 0.00 0.00 3.72
221 222 0.668706 GAGCTCAGCACACGACACAT 60.669 55.000 9.40 0.00 0.00 3.21
222 223 0.947660 AGCTCAGCACACGACACATG 60.948 55.000 0.00 0.00 0.00 3.21
223 224 1.904852 GCTCAGCACACGACACATGG 61.905 60.000 0.00 0.00 0.00 3.66
224 225 1.904852 CTCAGCACACGACACATGGC 61.905 60.000 0.00 0.00 0.00 4.40
240 241 4.666532 GCGACAGCAACACACGGC 62.667 66.667 0.00 0.00 44.35 5.68
241 242 4.354212 CGACAGCAACACACGGCG 62.354 66.667 4.80 4.80 34.54 6.46
242 243 3.269347 GACAGCAACACACGGCGT 61.269 61.111 6.77 6.77 34.54 5.68
268 269 2.759560 GGCCCATCACGCCCATTT 60.760 61.111 0.00 0.00 40.78 2.32
269 270 2.495866 GCCCATCACGCCCATTTG 59.504 61.111 0.00 0.00 0.00 2.32
270 271 2.350458 GCCCATCACGCCCATTTGT 61.350 57.895 0.00 0.00 0.00 2.83
271 272 1.034838 GCCCATCACGCCCATTTGTA 61.035 55.000 0.00 0.00 0.00 2.41
272 273 1.024271 CCCATCACGCCCATTTGTAG 58.976 55.000 0.00 0.00 0.00 2.74
273 274 0.381801 CCATCACGCCCATTTGTAGC 59.618 55.000 0.00 0.00 0.00 3.58
274 275 0.381801 CATCACGCCCATTTGTAGCC 59.618 55.000 0.00 0.00 0.00 3.93
275 276 0.751643 ATCACGCCCATTTGTAGCCC 60.752 55.000 0.00 0.00 0.00 5.19
276 277 2.044352 ACGCCCATTTGTAGCCCC 60.044 61.111 0.00 0.00 0.00 5.80
277 278 2.275418 CGCCCATTTGTAGCCCCT 59.725 61.111 0.00 0.00 0.00 4.79
278 279 1.379843 CGCCCATTTGTAGCCCCTT 60.380 57.895 0.00 0.00 0.00 3.95
279 280 1.384222 CGCCCATTTGTAGCCCCTTC 61.384 60.000 0.00 0.00 0.00 3.46
280 281 1.043116 GCCCATTTGTAGCCCCTTCC 61.043 60.000 0.00 0.00 0.00 3.46
281 282 0.334676 CCCATTTGTAGCCCCTTCCA 59.665 55.000 0.00 0.00 0.00 3.53
282 283 1.686115 CCCATTTGTAGCCCCTTCCAG 60.686 57.143 0.00 0.00 0.00 3.86
283 284 1.686115 CCATTTGTAGCCCCTTCCAGG 60.686 57.143 0.00 0.00 34.30 4.45
292 293 2.427753 CCTTCCAGGGATAGCCGC 59.572 66.667 0.00 0.00 33.83 6.53
293 294 2.143419 CCTTCCAGGGATAGCCGCT 61.143 63.158 0.00 0.00 38.76 5.52
294 295 0.832135 CCTTCCAGGGATAGCCGCTA 60.832 60.000 1.73 1.73 36.17 4.26
295 296 0.605589 CTTCCAGGGATAGCCGCTAG 59.394 60.000 6.23 0.00 36.17 3.42
296 297 0.105658 TTCCAGGGATAGCCGCTAGT 60.106 55.000 6.23 0.00 36.17 2.57
297 298 0.105658 TCCAGGGATAGCCGCTAGTT 60.106 55.000 6.23 0.00 36.17 2.24
298 299 1.146359 TCCAGGGATAGCCGCTAGTTA 59.854 52.381 6.23 0.00 36.17 2.24
299 300 1.546476 CCAGGGATAGCCGCTAGTTAG 59.454 57.143 6.23 0.00 36.17 2.34
300 301 2.240279 CAGGGATAGCCGCTAGTTAGT 58.760 52.381 6.23 0.00 36.17 2.24
301 302 2.628657 CAGGGATAGCCGCTAGTTAGTT 59.371 50.000 6.23 0.00 36.17 2.24
302 303 3.069729 CAGGGATAGCCGCTAGTTAGTTT 59.930 47.826 6.23 0.00 36.17 2.66
303 304 4.280174 CAGGGATAGCCGCTAGTTAGTTTA 59.720 45.833 6.23 0.00 36.17 2.01
304 305 4.897670 AGGGATAGCCGCTAGTTAGTTTAA 59.102 41.667 6.23 0.00 36.17 1.52
305 306 5.010820 AGGGATAGCCGCTAGTTAGTTTAAG 59.989 44.000 6.23 0.00 36.17 1.85
306 307 5.228665 GGATAGCCGCTAGTTAGTTTAAGG 58.771 45.833 6.23 0.00 0.00 2.69
307 308 5.010415 GGATAGCCGCTAGTTAGTTTAAGGA 59.990 44.000 6.23 0.00 0.00 3.36
308 309 6.295180 GGATAGCCGCTAGTTAGTTTAAGGAT 60.295 42.308 6.23 0.00 0.00 3.24
309 310 4.694339 AGCCGCTAGTTAGTTTAAGGATG 58.306 43.478 0.00 0.00 0.00 3.51
310 311 4.404715 AGCCGCTAGTTAGTTTAAGGATGA 59.595 41.667 0.00 0.00 0.00 2.92
311 312 4.507021 GCCGCTAGTTAGTTTAAGGATGAC 59.493 45.833 0.00 0.00 0.00 3.06
312 313 5.657474 CCGCTAGTTAGTTTAAGGATGACA 58.343 41.667 0.00 0.00 0.00 3.58
313 314 6.103997 CCGCTAGTTAGTTTAAGGATGACAA 58.896 40.000 0.00 0.00 0.00 3.18
314 315 6.761714 CCGCTAGTTAGTTTAAGGATGACAAT 59.238 38.462 0.00 0.00 0.00 2.71
315 316 7.280205 CCGCTAGTTAGTTTAAGGATGACAATT 59.720 37.037 0.00 0.00 0.00 2.32
316 317 8.665685 CGCTAGTTAGTTTAAGGATGACAATTT 58.334 33.333 0.00 0.00 0.00 1.82
321 322 9.850628 GTTAGTTTAAGGATGACAATTTTACCC 57.149 33.333 0.00 0.00 0.00 3.69
322 323 9.589461 TTAGTTTAAGGATGACAATTTTACCCA 57.411 29.630 0.00 0.00 0.00 4.51
323 324 8.664669 AGTTTAAGGATGACAATTTTACCCAT 57.335 30.769 0.00 0.00 0.00 4.00
324 325 8.531146 AGTTTAAGGATGACAATTTTACCCATG 58.469 33.333 0.00 0.00 0.00 3.66
325 326 5.937975 AAGGATGACAATTTTACCCATGG 57.062 39.130 4.14 4.14 0.00 3.66
326 327 4.289245 AGGATGACAATTTTACCCATGGG 58.711 43.478 30.23 30.23 42.03 4.00
351 352 4.643795 CCTGCATGGTAGGGTGTG 57.356 61.111 0.00 0.00 0.00 3.82
352 353 1.077501 CCTGCATGGTAGGGTGTGG 60.078 63.158 0.00 0.00 0.00 4.17
353 354 1.750399 CTGCATGGTAGGGTGTGGC 60.750 63.158 0.00 0.00 0.00 5.01
354 355 2.354729 GCATGGTAGGGTGTGGCA 59.645 61.111 0.00 0.00 0.00 4.92
355 356 2.046285 GCATGGTAGGGTGTGGCAC 61.046 63.158 11.55 11.55 0.00 5.01
356 357 1.378378 CATGGTAGGGTGTGGCACA 59.622 57.895 17.96 17.96 35.86 4.57
357 358 0.034186 CATGGTAGGGTGTGGCACAT 60.034 55.000 24.95 10.70 44.52 3.21
358 359 0.704076 ATGGTAGGGTGTGGCACATT 59.296 50.000 24.95 14.67 44.52 2.71
359 360 0.480690 TGGTAGGGTGTGGCACATTT 59.519 50.000 24.95 14.32 44.52 2.32
360 361 1.133325 TGGTAGGGTGTGGCACATTTT 60.133 47.619 24.95 13.96 44.52 1.82
361 362 1.544246 GGTAGGGTGTGGCACATTTTC 59.456 52.381 24.95 10.59 44.52 2.29
362 363 2.235016 GTAGGGTGTGGCACATTTTCA 58.765 47.619 24.95 5.72 44.52 2.69
363 364 2.014010 AGGGTGTGGCACATTTTCAT 57.986 45.000 24.95 8.89 44.52 2.57
364 365 1.619827 AGGGTGTGGCACATTTTCATG 59.380 47.619 24.95 0.00 44.52 3.07
365 366 1.431496 GGTGTGGCACATTTTCATGC 58.569 50.000 24.95 7.84 44.52 4.06
371 372 1.658994 GCACATTTTCATGCCCATGG 58.341 50.000 4.14 4.14 39.24 3.66
372 373 1.744456 GCACATTTTCATGCCCATGGG 60.744 52.381 27.87 27.87 39.24 4.00
390 391 2.098618 GGCAGTACCCATACCCTAGT 57.901 55.000 0.00 0.00 30.88 2.57
391 392 1.969208 GGCAGTACCCATACCCTAGTC 59.031 57.143 0.00 0.00 30.88 2.59
395 396 2.782341 AGTACCCATACCCTAGTCGACT 59.218 50.000 23.66 23.66 30.88 4.18
400 401 3.181447 CCCATACCCTAGTCGACTAGTCA 60.181 52.174 37.69 26.73 43.34 3.41
406 407 4.350225 ACCCTAGTCGACTAGTCATGGATA 59.650 45.833 37.69 13.25 43.34 2.59
409 410 4.708576 AGTCGACTAGTCATGGATAGGA 57.291 45.455 18.46 6.25 0.00 2.94
419 420 0.397941 ATGGATAGGACATGGGCACG 59.602 55.000 0.00 0.00 0.00 5.34
437 438 3.420893 CACGATTTATGCCCATGGGTAT 58.579 45.455 33.50 33.50 43.03 2.73
442 443 0.112218 TATGCCCATGGGTATGCCAC 59.888 55.000 36.84 18.27 40.74 5.01
445 446 1.614711 CCCATGGGTATGCCACACT 59.385 57.895 23.93 0.00 36.17 3.55
447 448 0.548031 CCATGGGTATGCCACACTCT 59.452 55.000 2.85 0.00 36.17 3.24
451 452 0.529992 GGGTATGCCACACTCTACGC 60.530 60.000 1.04 0.00 36.17 4.42
452 453 0.174845 GGTATGCCACACTCTACGCA 59.825 55.000 0.00 0.00 35.35 5.24
454 455 0.179111 TATGCCACACTCTACGCAGC 60.179 55.000 0.00 0.00 34.15 5.25
471 472 4.072131 CGCAGCTATATTATTGGTGGGTT 58.928 43.478 18.96 0.00 39.89 4.11
472 473 5.242434 CGCAGCTATATTATTGGTGGGTTA 58.758 41.667 18.96 0.00 39.89 2.85
511 512 1.377333 GTAAGCTCTGTGCCCCACC 60.377 63.158 0.00 0.00 44.23 4.61
512 513 2.602676 TAAGCTCTGTGCCCCACCC 61.603 63.158 0.00 0.00 44.23 4.61
538 541 6.353951 CCCTCCTTCTAACAATCAACCCTAAT 60.354 42.308 0.00 0.00 0.00 1.73
569 572 0.736325 CTTAGTGGTTGGCGTCTCCG 60.736 60.000 0.00 0.00 37.80 4.63
589 592 7.868415 GTCTCCGCTACACATAGAATTAGAAAT 59.132 37.037 0.00 0.00 0.00 2.17
590 593 8.082852 TCTCCGCTACACATAGAATTAGAAATC 58.917 37.037 0.00 0.00 0.00 2.17
593 596 7.438160 CCGCTACACATAGAATTAGAAATCACA 59.562 37.037 0.00 0.00 0.00 3.58
630 633 5.482163 TGTTCTATTGATATGCCCGATGA 57.518 39.130 0.00 0.00 0.00 2.92
635 638 7.423844 TCTATTGATATGCCCGATGAATACT 57.576 36.000 0.00 0.00 0.00 2.12
672 675 1.202806 CCAGGTATGGGTATGTGCTGG 60.203 57.143 0.00 0.00 43.54 4.85
680 683 5.683876 ATGGGTATGTGCTGGATATCTAC 57.316 43.478 2.05 0.00 0.00 2.59
688 691 2.225267 TGCTGGATATCTACCCGATGGA 60.225 50.000 2.05 0.00 33.48 3.41
690 693 4.215908 GCTGGATATCTACCCGATGGATA 58.784 47.826 2.05 0.00 35.43 2.59
702 705 4.804597 CCCGATGGATAGGGTATAGATGA 58.195 47.826 0.00 0.00 42.67 2.92
740 743 7.142995 TGTGAAACATATGTATGGGTATGGA 57.857 36.000 9.21 0.00 45.67 3.41
741 744 7.223584 TGTGAAACATATGTATGGGTATGGAG 58.776 38.462 9.21 0.00 45.67 3.86
751 754 7.924358 TGTATGGGTATGGAGTTATTGTACT 57.076 36.000 0.00 0.00 0.00 2.73
756 759 6.127168 TGGGTATGGAGTTATTGTACTCACAG 60.127 42.308 6.17 0.00 45.07 3.66
757 760 6.127140 GGGTATGGAGTTATTGTACTCACAGT 60.127 42.308 6.17 0.00 45.07 3.55
760 763 9.464714 GTATGGAGTTATTGTACTCACAGTATG 57.535 37.037 6.17 0.00 45.07 2.39
761 764 6.338146 TGGAGTTATTGTACTCACAGTATGC 58.662 40.000 6.17 0.00 45.07 3.14
762 765 6.154534 TGGAGTTATTGTACTCACAGTATGCT 59.845 38.462 6.17 0.00 45.07 3.79
771 774 3.133721 ACTCACAGTATGCTCTCCCATTC 59.866 47.826 0.00 0.00 42.53 2.67
776 779 4.040217 ACAGTATGCTCTCCCATTCTCATC 59.960 45.833 0.00 0.00 42.53 2.92
788 791 8.611257 TCTCCCATTCTCATCCTTAAACTTAAA 58.389 33.333 0.00 0.00 0.00 1.52
796 799 5.479027 TCATCCTTAAACTTAAAGTTGCCCC 59.521 40.000 0.00 0.00 38.66 5.80
814 817 0.825010 CCTGCTTTGGCTCAACCTGT 60.825 55.000 0.00 0.00 40.22 4.00
840 870 9.374711 TCATCCCAAACTTTACCTTTTCTATTT 57.625 29.630 0.00 0.00 0.00 1.40
858 888 7.095695 TCTATTTCATTGTTTCGGAAATCCC 57.904 36.000 6.43 0.00 40.58 3.85
881 911 0.036010 ACCGAAATGAGCCCTCACTG 60.036 55.000 0.00 0.00 43.11 3.66
893 923 3.826729 AGCCCTCACTGGTGTTTTAAATC 59.173 43.478 0.53 0.00 0.00 2.17
894 924 3.572255 GCCCTCACTGGTGTTTTAAATCA 59.428 43.478 0.53 0.00 0.00 2.57
895 925 4.321230 GCCCTCACTGGTGTTTTAAATCAG 60.321 45.833 0.00 3.73 0.00 2.90
898 928 6.183360 CCCTCACTGGTGTTTTAAATCAGTTT 60.183 38.462 0.00 0.00 36.66 2.66
914 944 5.881923 TCAGTTTAGTATTTCCGGCCTAT 57.118 39.130 0.00 0.00 0.00 2.57
948 978 2.873797 GCCAAAACTAGGGCCTGAG 58.126 57.895 18.53 12.09 44.53 3.35
949 979 1.315981 GCCAAAACTAGGGCCTGAGC 61.316 60.000 18.53 4.41 44.53 4.26
950 980 0.038166 CCAAAACTAGGGCCTGAGCA 59.962 55.000 18.53 0.00 42.56 4.26
970 1005 1.459455 TTGACCCGGTTTGTGCCATG 61.459 55.000 0.00 0.00 0.00 3.66
976 1011 2.635443 GGTTTGTGCCATGTCCCCG 61.635 63.158 0.00 0.00 0.00 5.73
984 1019 1.687840 CCATGTCCCCGTACTCCCA 60.688 63.158 0.00 0.00 0.00 4.37
1082 1142 2.445654 CTCCTCCTCTCCTGCCCC 60.446 72.222 0.00 0.00 0.00 5.80
1112 1172 3.106738 TCGATCCCGAGTAACCTCC 57.893 57.895 0.00 0.00 40.30 4.30
1113 1173 0.466922 TCGATCCCGAGTAACCTCCC 60.467 60.000 0.00 0.00 40.30 4.30
1114 1174 1.461911 CGATCCCGAGTAACCTCCCC 61.462 65.000 0.00 0.00 38.22 4.81
1115 1175 1.074699 ATCCCGAGTAACCTCCCCC 60.075 63.158 0.00 0.00 33.93 5.40
1153 1727 1.958205 CCCGATTCCGCTGCAGATC 60.958 63.158 20.43 10.50 0.00 2.75
1184 1758 5.080969 TCTTCCCATGGTCTTAACTAACG 57.919 43.478 11.73 0.00 0.00 3.18
1211 1785 1.000385 TGCTGCCAAATGAAGGTTTCG 60.000 47.619 0.00 0.00 0.00 3.46
1222 1796 1.607148 GAAGGTTTCGGTGAGGTTTGG 59.393 52.381 0.00 0.00 0.00 3.28
1243 1817 2.412323 CGTCCTTCGACCGGATCCA 61.412 63.158 9.46 0.00 42.86 3.41
1287 1861 1.700955 TTCTATAGGCGAGGTGGTCC 58.299 55.000 0.00 0.00 0.00 4.46
1293 1867 2.772691 GGCGAGGTGGTCCGTCTAG 61.773 68.421 0.00 0.00 39.05 2.43
1294 1868 2.799371 CGAGGTGGTCCGTCTAGC 59.201 66.667 0.00 0.00 39.05 3.42
1295 1869 1.749638 CGAGGTGGTCCGTCTAGCT 60.750 63.158 0.00 0.00 38.04 3.32
1296 1870 0.463295 CGAGGTGGTCCGTCTAGCTA 60.463 60.000 0.00 0.00 35.59 3.32
1297 1871 1.310904 GAGGTGGTCCGTCTAGCTAG 58.689 60.000 15.01 15.01 35.59 3.42
1326 1900 2.758770 TACCGTGTGTGCTCGCTTCC 62.759 60.000 0.56 0.00 0.00 3.46
1373 1947 4.389992 TCATCTTTGTTCGTCTTGCAGATC 59.610 41.667 0.00 0.00 0.00 2.75
1415 1989 2.461110 CCCATCGCTGTACAACGGC 61.461 63.158 17.85 7.14 46.66 5.68
1443 2017 1.053424 TCGGGTATGCATAACCTCCC 58.947 55.000 32.78 24.49 38.00 4.30
1446 2020 2.838202 CGGGTATGCATAACCTCCCTAT 59.162 50.000 32.78 0.00 38.00 2.57
1454 2028 6.354794 TGCATAACCTCCCTATGTATGTAC 57.645 41.667 0.00 0.00 0.00 2.90
1455 2029 5.047590 TGCATAACCTCCCTATGTATGTACG 60.048 44.000 0.00 0.00 0.00 3.67
1456 2030 5.047519 GCATAACCTCCCTATGTATGTACGT 60.048 44.000 0.00 0.00 0.00 3.57
1457 2031 6.151648 GCATAACCTCCCTATGTATGTACGTA 59.848 42.308 0.00 0.00 0.00 3.57
1484 2058 1.752498 CTGGCAAGCCATTTATCTGCA 59.248 47.619 15.09 0.00 46.15 4.41
1485 2059 1.752498 TGGCAAGCCATTTATCTGCAG 59.248 47.619 10.24 7.63 41.89 4.41
1486 2060 1.537562 GGCAAGCCATTTATCTGCAGC 60.538 52.381 9.47 0.00 35.81 5.25
1487 2061 1.407979 GCAAGCCATTTATCTGCAGCT 59.592 47.619 9.47 0.82 0.00 4.24
1488 2062 2.543238 GCAAGCCATTTATCTGCAGCTC 60.543 50.000 9.47 0.00 0.00 4.09
1490 2064 4.132336 CAAGCCATTTATCTGCAGCTCTA 58.868 43.478 9.47 0.00 0.00 2.43
1491 2065 4.005487 AGCCATTTATCTGCAGCTCTAG 57.995 45.455 9.47 0.00 0.00 2.43
1493 2067 3.497640 GCCATTTATCTGCAGCTCTAGTG 59.502 47.826 9.47 3.49 0.00 2.74
1494 2068 4.741837 GCCATTTATCTGCAGCTCTAGTGA 60.742 45.833 9.47 0.00 0.00 3.41
1495 2069 5.549347 CCATTTATCTGCAGCTCTAGTGAT 58.451 41.667 9.47 0.00 0.00 3.06
1496 2070 5.638657 CCATTTATCTGCAGCTCTAGTGATC 59.361 44.000 9.47 0.00 0.00 2.92
1497 2071 6.457355 CATTTATCTGCAGCTCTAGTGATCT 58.543 40.000 9.47 0.00 0.00 2.75
1498 2072 7.309683 CCATTTATCTGCAGCTCTAGTGATCTA 60.310 40.741 9.47 0.00 0.00 1.98
1499 2073 7.773489 TTTATCTGCAGCTCTAGTGATCTAT 57.227 36.000 9.47 0.00 0.00 1.98
1500 2074 8.870075 TTTATCTGCAGCTCTAGTGATCTATA 57.130 34.615 9.47 0.00 0.00 1.31
1501 2075 6.757897 ATCTGCAGCTCTAGTGATCTATAC 57.242 41.667 9.47 0.00 0.00 1.47
1502 2076 4.693095 TCTGCAGCTCTAGTGATCTATACG 59.307 45.833 9.47 0.00 0.00 3.06
1503 2077 4.390264 TGCAGCTCTAGTGATCTATACGT 58.610 43.478 0.00 0.00 0.00 3.57
1504 2078 4.214332 TGCAGCTCTAGTGATCTATACGTG 59.786 45.833 0.00 0.00 0.00 4.49
1505 2079 4.214545 GCAGCTCTAGTGATCTATACGTGT 59.785 45.833 0.00 0.00 0.00 4.49
1533 2107 8.264347 TGTATACACTTGATTTTGGCAGAGATA 58.736 33.333 0.08 0.00 0.00 1.98
1537 2111 7.899973 ACACTTGATTTTGGCAGAGATAAATT 58.100 30.769 0.00 0.00 0.00 1.82
1538 2112 9.023962 ACACTTGATTTTGGCAGAGATAAATTA 57.976 29.630 0.00 0.00 0.00 1.40
1539 2113 9.859427 CACTTGATTTTGGCAGAGATAAATTAA 57.141 29.630 0.00 0.00 0.00 1.40
1540 2114 9.860898 ACTTGATTTTGGCAGAGATAAATTAAC 57.139 29.630 0.00 0.00 0.00 2.01
1541 2115 9.859427 CTTGATTTTGGCAGAGATAAATTAACA 57.141 29.630 0.00 0.00 0.00 2.41
1559 2162 9.773328 AAATTAACACACACTTGATTATCGATG 57.227 29.630 8.54 0.00 0.00 3.84
1568 2171 9.986833 CACACTTGATTATCGATGAACAATTTA 57.013 29.630 12.24 0.00 0.00 1.40
1578 2181 6.701937 TCGATGAACAATTTATACTTGACGC 58.298 36.000 2.09 0.00 0.00 5.19
1580 2183 6.456315 CGATGAACAATTTATACTTGACGCCA 60.456 38.462 2.09 0.00 0.00 5.69
1600 2204 7.607250 ACGCCAATAATGTTTCTTCCATTTTA 58.393 30.769 0.00 0.00 34.51 1.52
1602 2206 8.594687 CGCCAATAATGTTTCTTCCATTTTAAG 58.405 33.333 0.00 0.00 34.51 1.85
1603 2207 8.390354 GCCAATAATGTTTCTTCCATTTTAAGC 58.610 33.333 0.00 0.00 34.51 3.09
1604 2208 9.434420 CCAATAATGTTTCTTCCATTTTAAGCA 57.566 29.630 0.00 0.00 34.51 3.91
1609 2213 9.995003 AATGTTTCTTCCATTTTAAGCAATGTA 57.005 25.926 0.00 0.00 32.95 2.29
1653 2258 4.982295 GCCAAATTGGTACTGACAAGAAAC 59.018 41.667 14.17 0.00 40.46 2.78
1654 2259 5.451242 GCCAAATTGGTACTGACAAGAAACA 60.451 40.000 14.17 0.00 40.46 2.83
1655 2260 6.568869 CCAAATTGGTACTGACAAGAAACAA 58.431 36.000 3.34 0.00 31.35 2.83
1656 2261 7.209475 CCAAATTGGTACTGACAAGAAACAAT 58.791 34.615 3.34 0.00 31.35 2.71
1658 2263 9.097257 CAAATTGGTACTGACAAGAAACAATTT 57.903 29.630 11.49 11.49 40.05 1.82
1709 2536 7.553334 TCTTCCATGCTAAGTAATTTACGAGT 58.447 34.615 11.03 1.52 0.00 4.18
1739 2655 1.130561 GCCGTTGACTGCCATAAGTTC 59.869 52.381 0.00 0.00 0.00 3.01
1839 3045 9.498307 CCGTTTATAGTTAAAACAAGCCATTAG 57.502 33.333 0.00 0.00 36.78 1.73
1868 3074 4.499037 ACTTTGCTGTTTTTATCGGTCC 57.501 40.909 0.00 0.00 0.00 4.46
1885 3091 2.091830 GGTCCTTCCTTTATCCCCCTTG 60.092 54.545 0.00 0.00 0.00 3.61
1896 3102 1.075601 TCCCCCTTGACTGCATTTCT 58.924 50.000 0.00 0.00 0.00 2.52
1897 3103 1.180029 CCCCCTTGACTGCATTTCTG 58.820 55.000 0.00 0.00 0.00 3.02
1910 3116 6.176183 ACTGCATTTCTGAGTGCTAGTATTT 58.824 36.000 15.12 0.00 41.78 1.40
1983 3189 3.376234 CGCAGTGATGAATCAAATCAGGT 59.624 43.478 0.00 0.00 38.75 4.00
2048 3255 9.336171 GGTTTGCTTGATCTTTCTTATCTATCT 57.664 33.333 0.00 0.00 0.00 1.98
2078 3285 4.473477 ACACCTGTAGTTCCTTCTATGC 57.527 45.455 0.00 0.00 0.00 3.14
2086 3293 6.170506 TGTAGTTCCTTCTATGCGATGTTTT 58.829 36.000 0.00 0.00 0.00 2.43
2089 3296 5.705441 AGTTCCTTCTATGCGATGTTTTCAA 59.295 36.000 0.00 0.00 0.00 2.69
2094 3301 4.912214 TCTATGCGATGTTTTCAATGCAG 58.088 39.130 0.00 0.00 43.45 4.41
2102 3309 2.034939 TGTTTTCAATGCAGCACCTCTG 59.965 45.455 0.00 0.00 45.62 3.35
2113 3320 3.866066 GCAGCACCTCTGTCTAACATCAA 60.866 47.826 0.00 0.00 44.66 2.57
2236 3443 6.963322 AGTTAGAACCTTAGATGCCTTCATT 58.037 36.000 0.00 0.00 31.96 2.57
2360 3584 3.660970 AACAAATTTTGCCCCACCTTT 57.339 38.095 9.04 0.00 0.00 3.11
2386 3610 1.068748 CCTTTCCATGCTCGCATATGC 60.069 52.381 18.08 18.08 34.91 3.14
2470 3694 7.016361 ACAACTTGTGTCAGTATTTTGTCTC 57.984 36.000 0.00 0.00 34.38 3.36
2481 3705 7.750903 GTCAGTATTTTGTCTCCTTAATTGCAC 59.249 37.037 0.00 0.00 0.00 4.57
2482 3706 6.742718 CAGTATTTTGTCTCCTTAATTGCACG 59.257 38.462 0.00 0.00 0.00 5.34
2573 3797 7.995488 TCTGATCTGATTAGATGACTCTGTGTA 59.005 37.037 4.45 0.00 43.63 2.90
2723 3947 9.661954 AGGACATTCTGAGGTAATATCTTAAGA 57.338 33.333 7.82 7.82 0.00 2.10
2753 3977 8.239314 AGAATGTTACAATATTGAGCACAGTTG 58.761 33.333 22.16 0.00 0.00 3.16
2761 3985 4.696899 ATTGAGCACAGTTGATGACATG 57.303 40.909 0.00 0.00 0.00 3.21
2765 3989 4.692155 TGAGCACAGTTGATGACATGTAAG 59.308 41.667 0.00 0.00 0.00 2.34
2774 3998 7.379529 CAGTTGATGACATGTAAGGTTTTTGTC 59.620 37.037 0.00 0.00 37.73 3.18
2810 4034 4.924625 AGTAGAGACAAAGCTCTAGGACA 58.075 43.478 0.00 0.00 45.43 4.02
2821 4045 4.508662 AGCTCTAGGACATGTAACTTTGC 58.491 43.478 0.00 6.02 0.00 3.68
2849 4073 5.107568 GCTGGACTGTTTAGTTTAACTCGTC 60.108 44.000 0.00 2.49 37.25 4.20
2881 4105 3.806380 AGAGATCAGCATTCATGTGGAC 58.194 45.455 0.00 0.00 0.00 4.02
2891 4115 2.346766 TCATGTGGACAGTGCTTGTT 57.653 45.000 0.00 0.00 41.05 2.83
2892 4116 2.653726 TCATGTGGACAGTGCTTGTTT 58.346 42.857 0.00 0.00 41.05 2.83
2963 4191 1.182667 GGGCCACCCATTACTGAAAC 58.817 55.000 4.39 0.00 44.65 2.78
2976 4204 6.925165 CCATTACTGAAACACAAAATGCTCTT 59.075 34.615 0.00 0.00 33.91 2.85
2990 4218 5.939764 AATGCTCTTGGTATAGTCACTCA 57.060 39.130 0.00 0.00 0.00 3.41
3006 4234 9.730705 ATAGTCACTCATTTTTCTTTCAGATGA 57.269 29.630 0.00 0.00 0.00 2.92
3011 4239 8.019669 CACTCATTTTTCTTTCAGATGACGAAT 58.980 33.333 0.00 0.00 0.00 3.34
3028 4261 9.813080 GATGACGAATAAATTTCCTAGTAATGC 57.187 33.333 0.00 0.00 0.00 3.56
3063 4296 4.599047 TGGAACATGGAAAATGTTGACC 57.401 40.909 8.35 5.46 41.76 4.02
3090 4323 7.704789 AGACAACAATTGAAATTCTTGAAGC 57.295 32.000 13.59 1.49 31.43 3.86
3093 4326 7.043565 ACAACAATTGAAATTCTTGAAGCAGT 58.956 30.769 13.59 0.00 31.43 4.40
3144 4385 2.989840 GAGTGGTCGATCTGTTGTCTTG 59.010 50.000 0.00 0.00 0.00 3.02
3153 4394 5.635280 TCGATCTGTTGTCTTGATGTTTCTC 59.365 40.000 0.00 0.00 0.00 2.87
3217 4458 5.481122 TGGAATCTTGGCTCATCAAAATGAA 59.519 36.000 0.00 0.00 41.33 2.57
3229 4470 8.645487 GCTCATCAAAATGAAGAAAAAGATGTC 58.355 33.333 0.00 0.00 41.33 3.06
3230 4471 9.687210 CTCATCAAAATGAAGAAAAAGATGTCA 57.313 29.630 0.00 0.00 41.33 3.58
3231 4472 9.687210 TCATCAAAATGAAGAAAAAGATGTCAG 57.313 29.630 0.00 0.00 38.97 3.51
3240 4481 5.874093 AGAAAAAGATGTCAGTGGTCTCAT 58.126 37.500 0.00 0.00 0.00 2.90
3339 4580 7.001674 TCACTGGTAATTAAATCACCAACACT 58.998 34.615 7.39 0.00 41.65 3.55
3351 4592 1.035139 CCAACACTCTTTGCCTTGCT 58.965 50.000 0.00 0.00 0.00 3.91
3372 4613 5.355071 TGCTTTCCTAATTACTGCATCACTG 59.645 40.000 0.00 0.00 0.00 3.66
3376 4617 3.879295 CCTAATTACTGCATCACTGGTGG 59.121 47.826 0.70 0.00 0.00 4.61
3379 4620 3.587095 CTGCATCACTGGTGGCAG 58.413 61.111 14.13 14.13 46.47 4.85
3380 4621 2.034532 TGCATCACTGGTGGCAGG 59.965 61.111 0.70 0.00 0.00 4.85
3383 4624 1.589716 GCATCACTGGTGGCAGGTTC 61.590 60.000 0.70 0.00 0.00 3.62
3417 4661 4.849813 AAATCAGGACCACATCAGATGA 57.150 40.909 17.81 0.00 0.00 2.92
3418 4662 5.384145 AAATCAGGACCACATCAGATGAT 57.616 39.130 17.81 1.96 31.42 2.45
3420 4664 4.849813 TCAGGACCACATCAGATGATTT 57.150 40.909 17.81 0.00 31.21 2.17
3421 4665 5.183530 TCAGGACCACATCAGATGATTTT 57.816 39.130 17.81 0.00 31.21 1.82
3471 4725 3.375782 GCAACTGCAGGATTTTCTTGT 57.624 42.857 19.93 0.00 41.59 3.16
3478 4732 7.288810 ACTGCAGGATTTTCTTGTATTTTGA 57.711 32.000 19.93 0.00 0.00 2.69
3537 4791 4.043310 ACCCATTCTCATTGGAGTTTCTCA 59.957 41.667 0.00 0.00 42.05 3.27
3538 4792 4.639310 CCCATTCTCATTGGAGTTTCTCAG 59.361 45.833 0.00 0.00 42.05 3.35
3556 4810 4.082949 TCTCAGCGAGAAACGAATGTTAGA 60.083 41.667 5.90 0.00 45.77 2.10
3574 4828 5.181245 TGTTAGACCAGCAGCATTCTTTTAC 59.819 40.000 0.00 0.00 0.00 2.01
3602 4856 1.013596 TAACATTGATTCCAGCGCCG 58.986 50.000 2.29 0.00 0.00 6.46
3646 4900 4.276926 GCTCAAGATGGTTATGAATCCACC 59.723 45.833 0.00 0.00 36.50 4.61
3664 4918 3.181462 CCACCAAGCTCTATGCAGTATCA 60.181 47.826 0.00 0.00 45.94 2.15
3665 4919 4.504514 CCACCAAGCTCTATGCAGTATCAT 60.505 45.833 0.00 0.00 45.94 2.45
3702 4956 1.032014 CTAGCAGCACTCCTCTCCTC 58.968 60.000 0.00 0.00 0.00 3.71
3710 4964 1.001406 CACTCCTCTCCTCGCTTTTGT 59.999 52.381 0.00 0.00 0.00 2.83
3742 4996 8.120465 CGTAACCATTGTTCATCTAATTGGTAC 58.880 37.037 0.00 0.00 35.87 3.34
3856 5110 1.396815 CGCTTCGGAAAGTTCGTGAAC 60.397 52.381 4.58 4.58 41.45 3.18
3881 5135 3.181493 ACCGATGTACCGATGTAAGTGTC 60.181 47.826 0.00 0.00 0.00 3.67
3882 5136 3.033873 CGATGTACCGATGTAAGTGTCG 58.966 50.000 0.00 0.00 37.58 4.35
3927 5181 7.693952 TCCAAACTACATCGATGCTTATTTTC 58.306 34.615 25.11 0.00 0.00 2.29
3982 5236 4.950475 TCCTATAGAATAGTCATGGAGCCG 59.050 45.833 0.00 0.00 0.00 5.52
3987 5241 1.391933 ATAGTCATGGAGCCGTGCGA 61.392 55.000 3.81 0.00 33.28 5.10
3994 5248 3.423154 GAGCCGTGCGACCTTTGG 61.423 66.667 0.00 0.00 0.00 3.28
3998 5252 2.317609 CCGTGCGACCTTTGGACAG 61.318 63.158 0.00 0.00 0.00 3.51
4138 5392 4.390297 CAGAGTTCAGACGGAAAGAAATCC 59.610 45.833 0.00 0.00 37.14 3.01
4140 5394 4.065789 AGTTCAGACGGAAAGAAATCCAC 58.934 43.478 0.00 0.00 39.61 4.02
4141 5395 3.762407 TCAGACGGAAAGAAATCCACA 57.238 42.857 0.00 0.00 39.61 4.17
4142 5396 3.664107 TCAGACGGAAAGAAATCCACAG 58.336 45.455 0.00 0.00 39.61 3.66
4148 5402 2.029918 GGAAAGAAATCCACAGCACACC 60.030 50.000 0.00 0.00 39.42 4.16
4199 5453 8.291032 CAGATTAAAGATGATCAAGAGCATTCC 58.709 37.037 0.00 0.00 37.59 3.01
4216 5470 8.116651 GAGCATTCCTCTGTAGACTATATGAA 57.883 38.462 0.00 0.00 37.60 2.57
4225 5479 8.533569 TCTGTAGACTATATGAAATGTGTCCA 57.466 34.615 0.00 0.00 0.00 4.02
4235 5489 3.007940 TGAAATGTGTCCATCTTCGTCCT 59.992 43.478 0.00 0.00 0.00 3.85
4266 5520 3.473093 TTTTCGTCTGTTTTTCGTGCA 57.527 38.095 0.00 0.00 0.00 4.57
4267 5521 2.730183 TTCGTCTGTTTTTCGTGCAG 57.270 45.000 0.00 0.00 0.00 4.41
4268 5522 1.647346 TCGTCTGTTTTTCGTGCAGT 58.353 45.000 0.00 0.00 0.00 4.40
4269 5523 1.326245 TCGTCTGTTTTTCGTGCAGTG 59.674 47.619 0.00 0.00 0.00 3.66
4270 5524 1.466855 GTCTGTTTTTCGTGCAGTGC 58.533 50.000 8.58 8.58 0.00 4.40
4271 5525 1.090728 TCTGTTTTTCGTGCAGTGCA 58.909 45.000 15.37 15.37 35.60 4.57
4324 5578 9.807921 TTATTTACTTCTGTTCCTGGAATTCTT 57.192 29.630 13.07 0.00 0.00 2.52
4331 5585 6.542821 TCTGTTCCTGGAATTCTTGTATGTT 58.457 36.000 13.07 0.00 0.00 2.71
4349 5603 1.717113 GTTCCGCGGTAACAAAAATGC 59.283 47.619 27.15 0.00 0.00 3.56
4356 5610 2.970609 CGGTAACAAAAATGCACGACTG 59.029 45.455 0.00 0.00 0.00 3.51
4373 5627 4.696402 ACGACTGATCCCTATCTATCGAAC 59.304 45.833 14.46 0.00 40.05 3.95
4426 5681 3.444703 TTGTAAGTTTTGCGCATGGTT 57.555 38.095 12.75 5.44 0.00 3.67
4470 5725 3.318017 CAAGTTCTTCCAGTCTGGTACG 58.682 50.000 18.65 8.36 39.03 3.67
4581 5894 9.077885 TCTGTTCATTTAAAGCCTGTTAAGATT 57.922 29.630 0.00 0.00 0.00 2.40
4647 5960 2.811431 TGAGAGTGTGGGCGTAATTTTG 59.189 45.455 0.00 0.00 0.00 2.44
4648 5961 1.539827 AGAGTGTGGGCGTAATTTTGC 59.460 47.619 0.00 0.00 0.00 3.68
4744 6057 7.362056 CGATTTGATTTCACTTATGGGTTGAGT 60.362 37.037 0.00 0.00 0.00 3.41
4762 6075 7.019418 GGTTGAGTTACCACGAAAATATTGTC 58.981 38.462 0.00 0.00 38.12 3.18
4798 6111 7.548097 AGAATATGTGTCCTGTGTACTAACAG 58.452 38.462 6.40 6.40 45.93 3.16
4815 6128 2.968675 ACAGCTTAATTAACGAGCCGT 58.031 42.857 4.38 0.00 43.97 5.68
4862 6175 9.896263 TTTGTTAAACCCATTAAGTTTATCGAC 57.104 29.630 0.00 0.00 38.94 4.20
4880 6193 3.384789 TCGACCTAAGATGAGTGATTGGG 59.615 47.826 0.00 0.00 0.00 4.12
5019 6332 7.709613 GCCCTCTCTTCAAATTACGTCTTTATA 59.290 37.037 0.00 0.00 0.00 0.98
5056 6369 1.278238 GCTCGGAACACGTTATCTGG 58.722 55.000 6.38 0.38 44.69 3.86
5128 6441 3.551551 GCGTGTTTGTTAGTCATGGTTC 58.448 45.455 0.00 0.00 0.00 3.62
5129 6442 3.002862 GCGTGTTTGTTAGTCATGGTTCA 59.997 43.478 0.00 0.00 0.00 3.18
5136 6450 4.699637 TGTTAGTCATGGTTCAACTTCGT 58.300 39.130 0.00 0.00 0.00 3.85
5149 6463 2.116827 ACTTCGTTGTCACCCACAAA 57.883 45.000 0.00 0.00 46.90 2.83
5261 6576 3.305335 GCCCACAAGTCGAATTGTCAATT 60.305 43.478 26.79 10.63 41.41 2.32
5272 6587 2.121291 TTGTCAATTCGCCATGGCTA 57.879 45.000 33.07 21.58 39.32 3.93
5339 6654 1.301716 TCGGCTCACCTTTGTGCTC 60.302 57.895 0.00 0.00 42.46 4.26
5366 6681 1.202639 TGGTACATCGGCTAGCAATGG 60.203 52.381 24.76 12.38 0.00 3.16
5371 6687 2.092968 ACATCGGCTAGCAATGGAAAGA 60.093 45.455 24.76 9.79 0.00 2.52
5372 6688 3.144506 CATCGGCTAGCAATGGAAAGAT 58.855 45.455 18.24 4.95 0.00 2.40
5374 6690 3.995199 TCGGCTAGCAATGGAAAGATAG 58.005 45.455 18.24 0.00 0.00 2.08
5376 6692 4.100963 TCGGCTAGCAATGGAAAGATAGAA 59.899 41.667 18.24 0.00 0.00 2.10
5377 6693 4.450419 CGGCTAGCAATGGAAAGATAGAAG 59.550 45.833 18.24 0.00 0.00 2.85
5380 6696 6.319911 GGCTAGCAATGGAAAGATAGAAGTTT 59.680 38.462 18.24 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.223479 GCGTGCTTCCTGAAAAAGTGAA 60.223 45.455 0.00 0.00 0.00 3.18
1 2 1.333619 GCGTGCTTCCTGAAAAAGTGA 59.666 47.619 0.00 0.00 0.00 3.41
2 3 1.065401 TGCGTGCTTCCTGAAAAAGTG 59.935 47.619 0.00 0.00 0.00 3.16
3 4 1.334869 CTGCGTGCTTCCTGAAAAAGT 59.665 47.619 0.00 0.00 0.00 2.66
4 5 1.603802 TCTGCGTGCTTCCTGAAAAAG 59.396 47.619 0.00 0.00 0.00 2.27
5 6 1.674359 TCTGCGTGCTTCCTGAAAAA 58.326 45.000 0.00 0.00 0.00 1.94
6 7 1.603802 CTTCTGCGTGCTTCCTGAAAA 59.396 47.619 0.00 0.00 0.00 2.29
7 8 1.229428 CTTCTGCGTGCTTCCTGAAA 58.771 50.000 0.00 0.00 0.00 2.69
8 9 1.230635 GCTTCTGCGTGCTTCCTGAA 61.231 55.000 0.00 0.00 0.00 3.02
9 10 1.669115 GCTTCTGCGTGCTTCCTGA 60.669 57.895 0.00 0.00 0.00 3.86
10 11 1.962822 TGCTTCTGCGTGCTTCCTG 60.963 57.895 0.00 0.00 43.34 3.86
11 12 1.963338 GTGCTTCTGCGTGCTTCCT 60.963 57.895 0.00 0.00 43.34 3.36
12 13 1.785041 TTGTGCTTCTGCGTGCTTCC 61.785 55.000 0.00 0.00 43.34 3.46
13 14 0.658536 GTTGTGCTTCTGCGTGCTTC 60.659 55.000 0.00 0.00 43.34 3.86
14 15 1.097547 AGTTGTGCTTCTGCGTGCTT 61.098 50.000 0.00 0.00 43.34 3.91
15 16 0.249868 TAGTTGTGCTTCTGCGTGCT 60.250 50.000 0.00 0.00 43.34 4.40
16 17 0.798776 ATAGTTGTGCTTCTGCGTGC 59.201 50.000 0.00 0.00 43.34 5.34
17 18 1.800586 ACATAGTTGTGCTTCTGCGTG 59.199 47.619 0.00 0.00 43.34 5.34
18 19 2.169832 ACATAGTTGTGCTTCTGCGT 57.830 45.000 0.00 0.00 43.34 5.24
19 20 3.058983 TGAAACATAGTTGTGCTTCTGCG 60.059 43.478 0.00 0.00 43.34 5.18
20 21 4.222114 GTGAAACATAGTTGTGCTTCTGC 58.778 43.478 0.00 0.00 35.83 4.26
21 22 5.422666 TGTGAAACATAGTTGTGCTTCTG 57.577 39.130 0.00 0.00 45.67 3.02
32 33 7.989085 CACAGTTGTGCTTAGTGTGAAACATAG 60.989 40.741 12.82 0.00 45.50 2.23
33 34 6.238347 CACAGTTGTGCTTAGTGTGAAACATA 60.238 38.462 12.82 0.00 45.50 2.29
34 35 5.449041 CACAGTTGTGCTTAGTGTGAAACAT 60.449 40.000 12.82 0.00 45.50 2.71
35 36 4.142708 CACAGTTGTGCTTAGTGTGAAACA 60.143 41.667 12.82 0.00 45.50 2.83
36 37 4.342772 CACAGTTGTGCTTAGTGTGAAAC 58.657 43.478 12.82 0.00 45.50 2.78
37 38 4.614555 CACAGTTGTGCTTAGTGTGAAA 57.385 40.909 12.82 0.00 45.50 2.69
50 51 2.486203 TGACGCTGAAAAACACAGTTGT 59.514 40.909 0.00 0.00 37.64 3.32
51 52 2.845967 GTGACGCTGAAAAACACAGTTG 59.154 45.455 0.00 0.00 37.64 3.16
52 53 2.475519 CGTGACGCTGAAAAACACAGTT 60.476 45.455 0.00 0.00 37.64 3.16
53 54 1.062002 CGTGACGCTGAAAAACACAGT 59.938 47.619 0.00 0.00 37.64 3.55
54 55 1.062002 ACGTGACGCTGAAAAACACAG 59.938 47.619 4.25 0.00 38.27 3.66
55 56 1.080298 ACGTGACGCTGAAAAACACA 58.920 45.000 4.25 0.00 0.00 3.72
56 57 1.452717 CACGTGACGCTGAAAAACAC 58.547 50.000 10.90 0.00 0.00 3.32
57 58 0.375454 CCACGTGACGCTGAAAAACA 59.625 50.000 19.30 0.00 0.00 2.83
58 59 0.653636 TCCACGTGACGCTGAAAAAC 59.346 50.000 19.30 0.00 0.00 2.43
59 60 1.329292 CTTCCACGTGACGCTGAAAAA 59.671 47.619 19.30 0.00 0.00 1.94
60 61 0.934496 CTTCCACGTGACGCTGAAAA 59.066 50.000 19.30 0.98 0.00 2.29
61 62 1.495584 GCTTCCACGTGACGCTGAAA 61.496 55.000 19.30 0.00 35.46 2.69
62 63 1.954146 GCTTCCACGTGACGCTGAA 60.954 57.895 19.30 10.47 35.46 3.02
63 64 2.355837 GCTTCCACGTGACGCTGA 60.356 61.111 19.30 1.61 35.46 4.26
64 65 2.661537 TGCTTCCACGTGACGCTG 60.662 61.111 19.30 2.58 38.94 5.18
65 66 2.661866 GTGCTTCCACGTGACGCT 60.662 61.111 19.30 0.00 38.94 5.07
66 67 2.530497 TTGTGCTTCCACGTGACGC 61.530 57.895 19.30 16.09 45.04 5.19
67 68 1.151777 AGTTGTGCTTCCACGTGACG 61.152 55.000 19.30 2.24 45.04 4.35
68 69 1.860676 TAGTTGTGCTTCCACGTGAC 58.139 50.000 19.30 7.30 45.04 3.67
69 70 2.831685 ATAGTTGTGCTTCCACGTGA 57.168 45.000 19.30 0.00 45.04 4.35
70 71 3.585862 AGTATAGTTGTGCTTCCACGTG 58.414 45.455 9.08 9.08 45.04 4.49
71 72 3.955650 AGTATAGTTGTGCTTCCACGT 57.044 42.857 0.00 0.00 45.04 4.49
72 73 5.390567 GGAAAAGTATAGTTGTGCTTCCACG 60.391 44.000 13.32 0.00 45.04 4.94
73 74 5.472137 TGGAAAAGTATAGTTGTGCTTCCAC 59.528 40.000 15.65 0.00 36.92 4.02
74 75 5.472137 GTGGAAAAGTATAGTTGTGCTTCCA 59.528 40.000 15.65 15.65 38.93 3.53
75 76 5.472137 TGTGGAAAAGTATAGTTGTGCTTCC 59.528 40.000 12.01 12.01 33.24 3.46
76 77 6.371389 GTGTGGAAAAGTATAGTTGTGCTTC 58.629 40.000 3.89 0.03 0.00 3.86
77 78 5.049680 CGTGTGGAAAAGTATAGTTGTGCTT 60.050 40.000 3.89 0.00 0.00 3.91
78 79 4.451096 CGTGTGGAAAAGTATAGTTGTGCT 59.549 41.667 3.89 0.00 0.00 4.40
79 80 4.449743 TCGTGTGGAAAAGTATAGTTGTGC 59.550 41.667 0.00 0.00 0.00 4.57
80 81 5.464057 TGTCGTGTGGAAAAGTATAGTTGTG 59.536 40.000 0.00 0.00 0.00 3.33
81 82 5.603596 TGTCGTGTGGAAAAGTATAGTTGT 58.396 37.500 0.00 0.00 0.00 3.32
82 83 6.534059 CATGTCGTGTGGAAAAGTATAGTTG 58.466 40.000 0.00 0.00 0.00 3.16
83 84 5.121768 GCATGTCGTGTGGAAAAGTATAGTT 59.878 40.000 0.00 0.00 0.00 2.24
84 85 4.630069 GCATGTCGTGTGGAAAAGTATAGT 59.370 41.667 0.00 0.00 0.00 2.12
85 86 4.870426 AGCATGTCGTGTGGAAAAGTATAG 59.130 41.667 0.00 0.00 0.00 1.31
86 87 4.827692 AGCATGTCGTGTGGAAAAGTATA 58.172 39.130 0.00 0.00 0.00 1.47
87 88 3.674997 AGCATGTCGTGTGGAAAAGTAT 58.325 40.909 0.00 0.00 0.00 2.12
88 89 3.120321 AGCATGTCGTGTGGAAAAGTA 57.880 42.857 0.00 0.00 0.00 2.24
89 90 1.967319 AGCATGTCGTGTGGAAAAGT 58.033 45.000 0.00 0.00 0.00 2.66
90 91 2.290367 TGAAGCATGTCGTGTGGAAAAG 59.710 45.455 0.00 0.00 0.00 2.27
91 92 2.293170 TGAAGCATGTCGTGTGGAAAA 58.707 42.857 0.00 0.00 0.00 2.29
92 93 1.960417 TGAAGCATGTCGTGTGGAAA 58.040 45.000 0.00 0.00 0.00 3.13
93 94 1.805943 CATGAAGCATGTCGTGTGGAA 59.194 47.619 0.00 0.00 37.12 3.53
94 95 1.001860 TCATGAAGCATGTCGTGTGGA 59.998 47.619 7.23 0.00 41.98 4.02
95 96 1.395954 CTCATGAAGCATGTCGTGTGG 59.604 52.381 7.23 0.00 41.98 4.17
96 97 2.340337 TCTCATGAAGCATGTCGTGTG 58.660 47.619 7.23 4.12 41.98 3.82
97 98 2.232208 TCTCTCATGAAGCATGTCGTGT 59.768 45.455 7.23 0.00 41.98 4.49
98 99 2.884827 TCTCTCATGAAGCATGTCGTG 58.115 47.619 7.23 0.00 41.98 4.35
99 100 3.599730 TTCTCTCATGAAGCATGTCGT 57.400 42.857 7.23 0.00 41.98 4.34
100 101 3.681417 TGTTTCTCTCATGAAGCATGTCG 59.319 43.478 7.23 1.46 41.98 4.35
101 102 5.814764 ATGTTTCTCTCATGAAGCATGTC 57.185 39.130 7.23 0.00 43.04 3.06
102 103 7.876936 AATATGTTTCTCTCATGAAGCATGT 57.123 32.000 13.91 7.03 43.92 3.21
103 104 9.582431 AAAAATATGTTTCTCTCATGAAGCATG 57.418 29.630 13.91 1.08 43.92 4.06
193 194 2.124403 GCTGAGCTCACCCATGGG 60.124 66.667 30.23 30.23 42.03 4.00
194 195 1.748122 GTGCTGAGCTCACCCATGG 60.748 63.158 13.74 4.14 0.00 3.66
195 196 1.002990 TGTGCTGAGCTCACCCATG 60.003 57.895 13.74 3.66 33.71 3.66
196 197 1.002868 GTGTGCTGAGCTCACCCAT 60.003 57.895 24.56 0.00 44.12 4.00
197 198 2.427320 GTGTGCTGAGCTCACCCA 59.573 61.111 24.56 10.28 44.12 4.51
198 199 2.740055 CGTGTGCTGAGCTCACCC 60.740 66.667 27.51 7.51 46.16 4.61
199 200 2.024319 GTCGTGTGCTGAGCTCACC 61.024 63.158 27.51 14.84 46.16 4.02
200 201 1.300156 TGTCGTGTGCTGAGCTCAC 60.300 57.895 24.97 24.97 45.67 3.51
201 202 1.300156 GTGTCGTGTGCTGAGCTCA 60.300 57.895 17.19 17.19 0.00 4.26
202 203 0.668706 ATGTGTCGTGTGCTGAGCTC 60.669 55.000 6.82 6.82 0.00 4.09
203 204 0.947660 CATGTGTCGTGTGCTGAGCT 60.948 55.000 5.83 0.00 0.00 4.09
204 205 1.494628 CATGTGTCGTGTGCTGAGC 59.505 57.895 0.00 0.00 0.00 4.26
205 206 1.904852 GCCATGTGTCGTGTGCTGAG 61.905 60.000 0.00 0.00 0.00 3.35
206 207 1.960763 GCCATGTGTCGTGTGCTGA 60.961 57.895 0.00 0.00 0.00 4.26
207 208 2.557805 GCCATGTGTCGTGTGCTG 59.442 61.111 0.00 0.00 0.00 4.41
208 209 3.043713 CGCCATGTGTCGTGTGCT 61.044 61.111 0.00 0.00 0.00 4.40
209 210 3.041351 TCGCCATGTGTCGTGTGC 61.041 61.111 0.00 0.00 0.00 4.57
210 211 1.890008 CTGTCGCCATGTGTCGTGTG 61.890 60.000 0.00 0.00 0.00 3.82
211 212 1.664649 CTGTCGCCATGTGTCGTGT 60.665 57.895 0.00 0.00 0.00 4.49
212 213 3.015293 GCTGTCGCCATGTGTCGTG 62.015 63.158 0.00 0.00 0.00 4.35
213 214 2.738521 GCTGTCGCCATGTGTCGT 60.739 61.111 0.00 0.00 0.00 4.34
214 215 2.316867 TTGCTGTCGCCATGTGTCG 61.317 57.895 0.00 0.00 34.43 4.35
215 216 1.207593 GTTGCTGTCGCCATGTGTC 59.792 57.895 0.00 0.00 34.43 3.67
216 217 1.525765 TGTTGCTGTCGCCATGTGT 60.526 52.632 0.00 0.00 34.43 3.72
217 218 1.081906 GTGTTGCTGTCGCCATGTG 60.082 57.895 0.00 0.00 34.43 3.21
218 219 1.525765 TGTGTTGCTGTCGCCATGT 60.526 52.632 0.00 0.00 34.43 3.21
219 220 1.081906 GTGTGTTGCTGTCGCCATG 60.082 57.895 0.00 0.00 34.43 3.66
220 221 2.606961 CGTGTGTTGCTGTCGCCAT 61.607 57.895 0.00 0.00 34.43 4.40
221 222 3.268603 CGTGTGTTGCTGTCGCCA 61.269 61.111 0.00 0.00 34.43 5.69
222 223 4.012895 CCGTGTGTTGCTGTCGCC 62.013 66.667 0.00 0.00 34.43 5.54
223 224 4.666532 GCCGTGTGTTGCTGTCGC 62.667 66.667 0.00 0.00 0.00 5.19
224 225 4.354212 CGCCGTGTGTTGCTGTCG 62.354 66.667 0.00 0.00 0.00 4.35
225 226 3.269347 ACGCCGTGTGTTGCTGTC 61.269 61.111 0.00 0.00 0.00 3.51
226 227 3.572539 CACGCCGTGTGTTGCTGT 61.573 61.111 9.53 0.00 43.88 4.40
252 253 1.034838 TACAAATGGGCGTGATGGGC 61.035 55.000 0.00 0.00 0.00 5.36
253 254 1.024271 CTACAAATGGGCGTGATGGG 58.976 55.000 0.00 0.00 0.00 4.00
254 255 0.381801 GCTACAAATGGGCGTGATGG 59.618 55.000 0.00 0.00 0.00 3.51
255 256 0.381801 GGCTACAAATGGGCGTGATG 59.618 55.000 0.00 0.00 0.00 3.07
256 257 0.751643 GGGCTACAAATGGGCGTGAT 60.752 55.000 0.00 0.00 31.86 3.06
257 258 1.377987 GGGCTACAAATGGGCGTGA 60.378 57.895 0.00 0.00 31.86 4.35
258 259 2.414785 GGGGCTACAAATGGGCGTG 61.415 63.158 0.00 0.00 31.86 5.34
259 260 2.044352 GGGGCTACAAATGGGCGT 60.044 61.111 0.00 0.00 31.86 5.68
260 261 1.379843 AAGGGGCTACAAATGGGCG 60.380 57.895 0.00 0.00 31.86 6.13
261 262 1.043116 GGAAGGGGCTACAAATGGGC 61.043 60.000 0.00 0.00 0.00 5.36
262 263 0.334676 TGGAAGGGGCTACAAATGGG 59.665 55.000 0.00 0.00 0.00 4.00
263 264 1.767759 CTGGAAGGGGCTACAAATGG 58.232 55.000 0.00 0.00 0.00 3.16
276 277 0.605589 CTAGCGGCTATCCCTGGAAG 59.394 60.000 10.62 0.00 0.00 3.46
277 278 0.105658 ACTAGCGGCTATCCCTGGAA 60.106 55.000 10.62 0.00 0.00 3.53
278 279 0.105658 AACTAGCGGCTATCCCTGGA 60.106 55.000 10.62 0.00 0.00 3.86
279 280 1.546476 CTAACTAGCGGCTATCCCTGG 59.454 57.143 10.62 0.05 0.00 4.45
280 281 2.240279 ACTAACTAGCGGCTATCCCTG 58.760 52.381 10.62 0.80 0.00 4.45
281 282 2.679429 ACTAACTAGCGGCTATCCCT 57.321 50.000 10.62 0.00 0.00 4.20
282 283 3.747854 AAACTAACTAGCGGCTATCCC 57.252 47.619 10.62 0.00 0.00 3.85
283 284 5.010415 TCCTTAAACTAACTAGCGGCTATCC 59.990 44.000 10.62 0.00 0.00 2.59
284 285 6.081872 TCCTTAAACTAACTAGCGGCTATC 57.918 41.667 10.62 0.00 0.00 2.08
285 286 6.267014 TCATCCTTAAACTAACTAGCGGCTAT 59.733 38.462 10.62 0.00 0.00 2.97
286 287 5.595542 TCATCCTTAAACTAACTAGCGGCTA 59.404 40.000 9.71 9.71 0.00 3.93
287 288 4.404715 TCATCCTTAAACTAACTAGCGGCT 59.595 41.667 7.98 7.98 0.00 5.52
288 289 4.507021 GTCATCCTTAAACTAACTAGCGGC 59.493 45.833 0.00 0.00 0.00 6.53
289 290 5.657474 TGTCATCCTTAAACTAACTAGCGG 58.343 41.667 0.00 0.00 0.00 5.52
290 291 7.772332 ATTGTCATCCTTAAACTAACTAGCG 57.228 36.000 0.00 0.00 0.00 4.26
295 296 9.850628 GGGTAAAATTGTCATCCTTAAACTAAC 57.149 33.333 0.00 0.00 0.00 2.34
296 297 9.589461 TGGGTAAAATTGTCATCCTTAAACTAA 57.411 29.630 0.00 0.00 0.00 2.24
297 298 9.762381 ATGGGTAAAATTGTCATCCTTAAACTA 57.238 29.630 0.00 0.00 0.00 2.24
298 299 8.531146 CATGGGTAAAATTGTCATCCTTAAACT 58.469 33.333 0.00 0.00 0.00 2.66
299 300 7.763985 CCATGGGTAAAATTGTCATCCTTAAAC 59.236 37.037 2.85 0.00 0.00 2.01
300 301 7.093112 CCCATGGGTAAAATTGTCATCCTTAAA 60.093 37.037 23.93 0.00 0.00 1.52
301 302 6.382570 CCCATGGGTAAAATTGTCATCCTTAA 59.617 38.462 23.93 0.00 0.00 1.85
302 303 5.896678 CCCATGGGTAAAATTGTCATCCTTA 59.103 40.000 23.93 0.00 0.00 2.69
303 304 4.716287 CCCATGGGTAAAATTGTCATCCTT 59.284 41.667 23.93 0.00 0.00 3.36
304 305 4.289245 CCCATGGGTAAAATTGTCATCCT 58.711 43.478 23.93 0.00 0.00 3.24
305 306 4.670896 CCCATGGGTAAAATTGTCATCC 57.329 45.455 23.93 0.00 0.00 3.51
334 335 1.077501 CCACACCCTACCATGCAGG 60.078 63.158 0.00 4.90 45.67 4.85
335 336 1.750399 GCCACACCCTACCATGCAG 60.750 63.158 0.00 0.00 0.00 4.41
336 337 2.354729 GCCACACCCTACCATGCA 59.645 61.111 0.00 0.00 0.00 3.96
337 338 2.046285 GTGCCACACCCTACCATGC 61.046 63.158 0.00 0.00 0.00 4.06
338 339 0.034186 ATGTGCCACACCCTACCATG 60.034 55.000 0.00 0.00 32.73 3.66
339 340 0.704076 AATGTGCCACACCCTACCAT 59.296 50.000 0.00 0.00 32.73 3.55
340 341 0.480690 AAATGTGCCACACCCTACCA 59.519 50.000 0.00 0.00 32.73 3.25
341 342 1.544246 GAAAATGTGCCACACCCTACC 59.456 52.381 0.00 0.00 32.73 3.18
342 343 2.235016 TGAAAATGTGCCACACCCTAC 58.765 47.619 0.00 0.00 32.73 3.18
343 344 2.666272 TGAAAATGTGCCACACCCTA 57.334 45.000 0.00 0.00 32.73 3.53
344 345 1.619827 CATGAAAATGTGCCACACCCT 59.380 47.619 0.00 0.00 32.73 4.34
345 346 1.940752 GCATGAAAATGTGCCACACCC 60.941 52.381 0.00 0.00 35.35 4.61
346 347 1.431496 GCATGAAAATGTGCCACACC 58.569 50.000 0.00 0.00 35.35 4.16
352 353 1.658994 CCATGGGCATGAAAATGTGC 58.341 50.000 2.85 0.00 41.20 4.57
353 354 2.319136 CCCATGGGCATGAAAATGTG 57.681 50.000 20.41 0.00 41.20 3.21
371 372 1.969208 GACTAGGGTATGGGTACTGCC 59.031 57.143 0.00 0.00 0.00 4.85
372 373 1.612463 CGACTAGGGTATGGGTACTGC 59.388 57.143 0.00 0.00 0.00 4.40
373 374 2.883386 GTCGACTAGGGTATGGGTACTG 59.117 54.545 8.70 0.00 0.00 2.74
374 375 2.782341 AGTCGACTAGGGTATGGGTACT 59.218 50.000 18.46 0.00 0.00 2.73
375 376 3.220674 AGTCGACTAGGGTATGGGTAC 57.779 52.381 18.46 0.00 0.00 3.34
376 377 4.630644 CTAGTCGACTAGGGTATGGGTA 57.369 50.000 35.19 9.96 41.65 3.69
377 378 3.505480 CTAGTCGACTAGGGTATGGGT 57.495 52.381 35.19 7.64 41.65 4.51
387 388 5.071384 TGTCCTATCCATGACTAGTCGACTA 59.929 44.000 23.34 23.34 32.67 2.59
388 389 4.141459 TGTCCTATCCATGACTAGTCGACT 60.141 45.833 23.66 23.66 32.67 4.18
389 390 4.135306 TGTCCTATCCATGACTAGTCGAC 58.865 47.826 17.85 7.70 32.67 4.20
390 391 4.432980 TGTCCTATCCATGACTAGTCGA 57.567 45.455 17.85 9.63 32.67 4.20
391 392 4.082517 CCATGTCCTATCCATGACTAGTCG 60.083 50.000 17.85 4.68 41.78 4.18
395 396 2.906389 GCCCATGTCCTATCCATGACTA 59.094 50.000 0.00 0.00 41.78 2.59
400 401 0.397941 CGTGCCCATGTCCTATCCAT 59.602 55.000 0.00 0.00 0.00 3.41
406 407 2.575532 CATAAATCGTGCCCATGTCCT 58.424 47.619 0.00 0.00 0.00 3.85
419 420 2.497273 GGCATACCCATGGGCATAAATC 59.503 50.000 31.73 12.89 39.32 2.17
432 433 0.529992 GCGTAGAGTGTGGCATACCC 60.530 60.000 11.00 0.00 33.59 3.69
437 438 1.248101 TAGCTGCGTAGAGTGTGGCA 61.248 55.000 4.08 0.00 0.00 4.92
442 443 6.309009 CACCAATAATATAGCTGCGTAGAGTG 59.691 42.308 4.08 0.00 0.00 3.51
445 446 5.337250 CCCACCAATAATATAGCTGCGTAGA 60.337 44.000 4.08 0.00 0.00 2.59
447 448 4.285003 ACCCACCAATAATATAGCTGCGTA 59.715 41.667 0.00 0.00 0.00 4.42
451 452 9.905713 ATGTATAACCCACCAATAATATAGCTG 57.094 33.333 0.00 0.00 0.00 4.24
480 481 5.739630 CACAGAGCTTACATACAACTACTCG 59.260 44.000 0.00 0.00 0.00 4.18
481 482 5.517054 GCACAGAGCTTACATACAACTACTC 59.483 44.000 0.00 0.00 41.15 2.59
511 512 3.621558 GTTGATTGTTAGAAGGAGGGGG 58.378 50.000 0.00 0.00 0.00 5.40
512 513 3.621558 GGTTGATTGTTAGAAGGAGGGG 58.378 50.000 0.00 0.00 0.00 4.79
538 541 6.481976 CGCCAACCACTAAGATGTTAATATGA 59.518 38.462 0.00 0.00 0.00 2.15
614 617 6.053632 TGAGTATTCATCGGGCATATCAAT 57.946 37.500 0.00 0.00 0.00 2.57
620 623 3.415212 CCAATGAGTATTCATCGGGCAT 58.585 45.455 0.65 0.00 43.20 4.40
654 657 2.190398 TCCAGCACATACCCATACCT 57.810 50.000 0.00 0.00 0.00 3.08
663 666 4.042271 TCGGGTAGATATCCAGCACATA 57.958 45.455 0.00 0.00 0.00 2.29
667 670 2.179427 CCATCGGGTAGATATCCAGCA 58.821 52.381 0.00 0.00 37.52 4.41
669 672 4.830046 CCTATCCATCGGGTAGATATCCAG 59.170 50.000 1.70 0.00 37.52 3.86
680 683 4.804597 TCATCTATACCCTATCCATCGGG 58.195 47.826 0.00 0.00 46.26 5.14
712 715 9.234827 CATACCCATACATATGTTTCACATCAT 57.765 33.333 14.77 0.00 39.88 2.45
717 720 7.224297 ACTCCATACCCATACATATGTTTCAC 58.776 38.462 14.77 0.00 31.82 3.18
718 721 7.387265 ACTCCATACCCATACATATGTTTCA 57.613 36.000 14.77 0.00 31.82 2.69
719 722 9.959721 ATAACTCCATACCCATACATATGTTTC 57.040 33.333 14.77 0.00 31.82 2.78
740 743 7.411486 AGAGCATACTGTGAGTACAATAACT 57.589 36.000 0.00 0.00 36.14 2.24
741 744 6.697892 GGAGAGCATACTGTGAGTACAATAAC 59.302 42.308 0.00 0.00 36.14 1.89
751 754 3.378512 AGAATGGGAGAGCATACTGTGA 58.621 45.455 0.00 0.00 0.00 3.58
756 759 3.582208 AGGATGAGAATGGGAGAGCATAC 59.418 47.826 0.00 0.00 0.00 2.39
757 760 3.866816 AGGATGAGAATGGGAGAGCATA 58.133 45.455 0.00 0.00 0.00 3.14
760 763 4.696479 TTAAGGATGAGAATGGGAGAGC 57.304 45.455 0.00 0.00 0.00 4.09
761 764 6.245890 AGTTTAAGGATGAGAATGGGAGAG 57.754 41.667 0.00 0.00 0.00 3.20
762 765 6.642733 AAGTTTAAGGATGAGAATGGGAGA 57.357 37.500 0.00 0.00 0.00 3.71
771 774 6.350194 GGGGCAACTTTAAGTTTAAGGATGAG 60.350 42.308 7.71 0.00 36.03 2.90
776 779 4.560716 GCAGGGGCAACTTTAAGTTTAAGG 60.561 45.833 7.71 0.00 36.03 2.69
796 799 0.595095 GACAGGTTGAGCCAAAGCAG 59.405 55.000 1.57 0.00 43.56 4.24
814 817 8.950007 AATAGAAAAGGTAAAGTTTGGGATGA 57.050 30.769 0.00 0.00 0.00 2.92
858 888 3.564027 GGGCTCATTTCGGTCGCG 61.564 66.667 0.00 0.00 0.00 5.87
865 895 1.271597 ACACCAGTGAGGGCTCATTTC 60.272 52.381 4.48 0.00 43.89 2.17
893 923 4.755123 CCATAGGCCGGAAATACTAAACTG 59.245 45.833 5.05 0.00 0.00 3.16
894 924 4.202430 CCCATAGGCCGGAAATACTAAACT 60.202 45.833 5.05 0.00 0.00 2.66
895 925 4.070009 CCCATAGGCCGGAAATACTAAAC 58.930 47.826 5.05 0.00 0.00 2.01
945 975 0.179004 ACAAACCGGGTCAATGCTCA 60.179 50.000 6.32 0.00 0.00 4.26
946 976 0.240945 CACAAACCGGGTCAATGCTC 59.759 55.000 6.32 0.00 0.00 4.26
947 977 1.805428 GCACAAACCGGGTCAATGCT 61.805 55.000 17.51 0.00 0.00 3.79
948 978 1.372872 GCACAAACCGGGTCAATGC 60.373 57.895 6.32 6.61 0.00 3.56
949 979 1.288752 GGCACAAACCGGGTCAATG 59.711 57.895 6.32 0.00 0.00 2.82
950 980 1.152652 TGGCACAAACCGGGTCAAT 60.153 52.632 6.32 0.00 31.92 2.57
970 1005 0.690077 AGGAATGGGAGTACGGGGAC 60.690 60.000 0.00 0.00 0.00 4.46
976 1011 4.518249 CTTTGGAAGAGGAATGGGAGTAC 58.482 47.826 0.00 0.00 0.00 2.73
984 1019 1.065126 CGGGAGCTTTGGAAGAGGAAT 60.065 52.381 0.00 0.00 0.00 3.01
1135 1709 1.958205 GATCTGCAGCGGAATCGGG 60.958 63.158 8.35 0.00 36.79 5.14
1137 1711 1.589993 ACGATCTGCAGCGGAATCG 60.590 57.895 25.45 25.45 39.81 3.34
1153 1727 1.019673 CCATGGGAAGAATCTGCACG 58.980 55.000 2.85 0.00 0.00 5.34
1159 1733 6.258068 CGTTAGTTAAGACCATGGGAAGAATC 59.742 42.308 18.09 2.88 0.00 2.52
1201 1775 2.294074 CAAACCTCACCGAAACCTTCA 58.706 47.619 0.00 0.00 0.00 3.02
1211 1785 1.302271 GGACGGACCAAACCTCACC 60.302 63.158 0.00 0.00 38.79 4.02
1222 1796 2.333706 GATCCGGTCGAAGGACGGAC 62.334 65.000 19.55 12.14 43.50 4.79
1268 1842 1.700955 GGACCACCTCGCCTATAGAA 58.299 55.000 0.00 0.00 0.00 2.10
1287 1861 4.091800 GGTACGATTAGAGCTAGCTAGACG 59.908 50.000 25.15 19.58 0.00 4.18
1326 1900 2.247358 ACAATGGCCCCTTGTTAACAG 58.753 47.619 13.53 3.50 33.10 3.16
1443 2017 8.241367 TGCCAGAATACATACGTACATACATAG 58.759 37.037 0.00 0.00 0.00 2.23
1446 2020 6.394025 TGCCAGAATACATACGTACATACA 57.606 37.500 0.00 0.00 0.00 2.29
1454 2028 2.560504 TGGCTTGCCAGAATACATACG 58.439 47.619 10.65 0.00 0.00 3.06
1455 2029 5.520376 AAATGGCTTGCCAGAATACATAC 57.480 39.130 19.53 0.00 0.00 2.39
1456 2030 7.175467 CAGATAAATGGCTTGCCAGAATACATA 59.825 37.037 19.53 5.62 0.00 2.29
1457 2031 6.015688 CAGATAAATGGCTTGCCAGAATACAT 60.016 38.462 19.53 6.99 0.00 2.29
1484 2058 7.162761 ACATACACGTATAGATCACTAGAGCT 58.837 38.462 0.00 0.00 44.06 4.09
1485 2059 7.367159 ACATACACGTATAGATCACTAGAGC 57.633 40.000 0.00 0.00 31.78 4.09
1503 2077 7.826744 TCTGCCAAAATCAAGTGTATACATACA 59.173 33.333 9.18 0.00 40.69 2.29
1504 2078 8.208718 TCTGCCAAAATCAAGTGTATACATAC 57.791 34.615 9.18 0.00 0.00 2.39
1505 2079 8.264347 TCTCTGCCAAAATCAAGTGTATACATA 58.736 33.333 9.18 0.00 0.00 2.29
1533 2107 9.773328 CATCGATAATCAAGTGTGTGTTAATTT 57.227 29.630 0.00 0.00 0.00 1.82
1537 2111 7.600752 TGTTCATCGATAATCAAGTGTGTGTTA 59.399 33.333 0.00 0.00 0.00 2.41
1538 2112 6.426633 TGTTCATCGATAATCAAGTGTGTGTT 59.573 34.615 0.00 0.00 0.00 3.32
1539 2113 5.931724 TGTTCATCGATAATCAAGTGTGTGT 59.068 36.000 0.00 0.00 0.00 3.72
1540 2114 6.407475 TGTTCATCGATAATCAAGTGTGTG 57.593 37.500 0.00 0.00 0.00 3.82
1541 2115 7.615582 ATTGTTCATCGATAATCAAGTGTGT 57.384 32.000 0.00 0.00 0.00 3.72
1554 2157 6.237996 GGCGTCAAGTATAAATTGTTCATCGA 60.238 38.462 0.00 0.00 0.00 3.59
1555 2158 5.901884 GGCGTCAAGTATAAATTGTTCATCG 59.098 40.000 0.00 0.00 0.00 3.84
1559 2162 9.730420 ATTATTGGCGTCAAGTATAAATTGTTC 57.270 29.630 9.01 0.00 36.19 3.18
1568 2171 7.391148 AAGAAACATTATTGGCGTCAAGTAT 57.609 32.000 9.01 0.74 36.19 2.12
1569 2172 6.128117 GGAAGAAACATTATTGGCGTCAAGTA 60.128 38.462 9.01 0.00 36.19 2.24
1570 2173 5.335661 GGAAGAAACATTATTGGCGTCAAGT 60.336 40.000 9.01 0.00 36.19 3.16
1571 2174 5.095490 GGAAGAAACATTATTGGCGTCAAG 58.905 41.667 9.01 0.00 36.19 3.02
1572 2175 4.520874 TGGAAGAAACATTATTGGCGTCAA 59.479 37.500 4.23 4.23 37.28 3.18
1573 2176 4.075682 TGGAAGAAACATTATTGGCGTCA 58.924 39.130 0.00 0.00 0.00 4.35
1574 2177 4.695217 TGGAAGAAACATTATTGGCGTC 57.305 40.909 0.00 0.00 0.00 5.19
1576 2179 6.966435 AAAATGGAAGAAACATTATTGGCG 57.034 33.333 0.00 0.00 37.55 5.69
1577 2180 8.390354 GCTTAAAATGGAAGAAACATTATTGGC 58.610 33.333 0.00 0.00 37.55 4.52
1578 2181 9.434420 TGCTTAAAATGGAAGAAACATTATTGG 57.566 29.630 0.00 0.00 37.55 3.16
1600 2204 8.970859 AGCATACTTCTAAATCTACATTGCTT 57.029 30.769 0.00 0.00 32.03 3.91
1602 2206 8.600449 AGAGCATACTTCTAAATCTACATTGC 57.400 34.615 0.00 0.00 0.00 3.56
1669 2309 5.679638 GCATGGAAGAAACATTATTCGCCTT 60.680 40.000 0.00 0.00 34.46 4.35
1671 2311 4.044426 GCATGGAAGAAACATTATTCGCC 58.956 43.478 0.00 0.00 34.46 5.54
1709 2536 1.079405 GTCAACGGCGGGAGATCAA 60.079 57.895 13.24 0.00 0.00 2.57
1739 2655 7.041098 AGGAACACTAAGCAAGTTCACAAATAG 60.041 37.037 0.00 0.00 42.50 1.73
1839 3045 7.015877 CGATAAAAACAGCAAAGTAGAAGTCC 58.984 38.462 0.00 0.00 0.00 3.85
1868 3074 3.891049 CAGTCAAGGGGGATAAAGGAAG 58.109 50.000 0.00 0.00 0.00 3.46
1885 3091 3.594134 ACTAGCACTCAGAAATGCAGTC 58.406 45.455 8.66 0.00 44.59 3.51
1896 3102 8.534954 ACCAAGAGTATAAATACTAGCACTCA 57.465 34.615 2.65 0.00 43.27 3.41
1897 3103 8.630917 TGACCAAGAGTATAAATACTAGCACTC 58.369 37.037 2.65 0.00 43.27 3.51
1983 3189 5.056480 CCAAATGAAGTGAGACACAGTACA 58.944 41.667 0.00 0.00 36.74 2.90
2071 3278 5.307926 TGCATTGAAAACATCGCATAGAA 57.692 34.783 0.00 0.00 0.00 2.10
2072 3279 4.731483 GCTGCATTGAAAACATCGCATAGA 60.731 41.667 0.00 0.00 0.00 1.98
2073 3280 3.484649 GCTGCATTGAAAACATCGCATAG 59.515 43.478 0.00 0.00 0.00 2.23
2077 3284 1.387756 GTGCTGCATTGAAAACATCGC 59.612 47.619 5.27 0.00 0.00 4.58
2078 3285 1.987770 GGTGCTGCATTGAAAACATCG 59.012 47.619 5.27 0.00 0.00 3.84
2094 3301 8.839310 ATAATATTGATGTTAGACAGAGGTGC 57.161 34.615 0.00 0.00 0.00 5.01
2220 3427 5.444176 AGAGGAAAATGAAGGCATCTAAGG 58.556 41.667 0.00 0.00 32.35 2.69
2259 3471 7.914537 ACTTTCGAAAGTTAAAGATGCAAAG 57.085 32.000 32.60 8.99 46.52 2.77
2327 3539 7.600752 GGGCAAAATTTGTTATGTACAAGCTTA 59.399 33.333 7.60 0.00 46.81 3.09
2360 3584 3.351740 TGCGAGCATGGAAAGGAAAATA 58.648 40.909 0.00 0.00 0.00 1.40
2386 3610 9.702494 TCTTCATAGTGATTAATGATACAGCAG 57.298 33.333 0.00 0.00 32.40 4.24
2455 3679 7.750903 GTGCAATTAAGGAGACAAAATACTGAC 59.249 37.037 0.00 0.00 0.00 3.51
2462 3686 3.886505 ACCGTGCAATTAAGGAGACAAAA 59.113 39.130 0.00 0.00 0.00 2.44
2505 3729 4.509970 TGGTCAAGACTCGTTGTTGTTATG 59.490 41.667 0.00 0.00 0.00 1.90
2514 3738 6.053005 TGAACTATTTTGGTCAAGACTCGTT 58.947 36.000 0.00 0.00 0.00 3.85
2725 3949 9.448438 ACTGTGCTCAATATTGTAACATTCTTA 57.552 29.630 14.97 0.00 0.00 2.10
2726 3950 8.340618 ACTGTGCTCAATATTGTAACATTCTT 57.659 30.769 14.97 2.21 0.00 2.52
2727 3951 7.928307 ACTGTGCTCAATATTGTAACATTCT 57.072 32.000 14.97 2.68 0.00 2.40
2728 3952 8.236586 TCAACTGTGCTCAATATTGTAACATTC 58.763 33.333 14.97 3.09 0.00 2.67
2753 3977 9.612620 CTTTAGACAAAAACCTTACATGTCATC 57.387 33.333 0.00 0.00 42.12 2.92
2761 3985 7.664318 TGGGATCTCTTTAGACAAAAACCTTAC 59.336 37.037 0.00 0.00 33.57 2.34
2765 3989 6.490381 ACTTGGGATCTCTTTAGACAAAAACC 59.510 38.462 0.00 0.00 33.57 3.27
2774 3998 7.411486 TTGTCTCTACTTGGGATCTCTTTAG 57.589 40.000 0.00 0.00 0.00 1.85
2810 4034 3.264450 AGTCCAGCCTAGCAAAGTTACAT 59.736 43.478 0.00 0.00 0.00 2.29
2821 4045 6.465084 AGTTAAACTAAACAGTCCAGCCTAG 58.535 40.000 0.00 0.00 0.00 3.02
2963 4191 6.372659 AGTGACTATACCAAGAGCATTTTGTG 59.627 38.462 0.00 0.00 0.00 3.33
2976 4204 9.219603 CTGAAAGAAAAATGAGTGACTATACCA 57.780 33.333 0.00 0.00 34.07 3.25
3043 4276 4.871933 AGGTCAACATTTTCCATGTTCC 57.128 40.909 0.00 0.00 39.94 3.62
3048 4281 6.549364 TGTTGTCTTAGGTCAACATTTTCCAT 59.451 34.615 12.35 0.00 45.50 3.41
3098 4331 7.174253 TCGAACCACAACTGCTTCTAAATAAAT 59.826 33.333 0.00 0.00 0.00 1.40
3108 4341 1.299541 CACTCGAACCACAACTGCTT 58.700 50.000 0.00 0.00 0.00 3.91
3111 4344 1.217882 GACCACTCGAACCACAACTG 58.782 55.000 0.00 0.00 0.00 3.16
3113 4346 0.249155 TCGACCACTCGAACCACAAC 60.249 55.000 0.00 0.00 46.04 3.32
3138 4379 7.884877 ACTTGGATAATGAGAAACATCAAGACA 59.115 33.333 0.00 0.00 38.36 3.41
3139 4380 8.273780 ACTTGGATAATGAGAAACATCAAGAC 57.726 34.615 0.00 0.00 38.36 3.01
3141 4382 8.733458 TGAACTTGGATAATGAGAAACATCAAG 58.267 33.333 0.00 0.00 40.14 3.02
3217 4458 5.296151 TGAGACCACTGACATCTTTTTCT 57.704 39.130 0.00 0.00 0.00 2.52
3229 4470 6.973843 TGAAATTCTTTCAATGAGACCACTG 58.026 36.000 0.00 0.00 45.94 3.66
3339 4580 6.010219 AGTAATTAGGAAAGCAAGGCAAAGA 58.990 36.000 0.00 0.00 0.00 2.52
3351 4592 5.647658 CACCAGTGATGCAGTAATTAGGAAA 59.352 40.000 0.00 0.00 0.00 3.13
3372 4613 0.755327 AAACCAGTGAACCTGCCACC 60.755 55.000 0.00 0.00 40.06 4.61
3376 4617 8.220755 TGATTTATATAAACCAGTGAACCTGC 57.779 34.615 10.07 0.00 40.06 4.85
3379 4620 8.837389 GTCCTGATTTATATAAACCAGTGAACC 58.163 37.037 22.67 9.40 35.48 3.62
3380 4621 8.837389 GGTCCTGATTTATATAAACCAGTGAAC 58.163 37.037 22.67 18.50 35.48 3.18
3383 4624 7.773224 TGTGGTCCTGATTTATATAAACCAGTG 59.227 37.037 22.67 15.96 35.48 3.66
3420 4664 9.995003 ATCTTCTTTGCATGGTAATTACAAAAA 57.005 25.926 17.16 3.50 30.51 1.94
3421 4665 9.995003 AATCTTCTTTGCATGGTAATTACAAAA 57.005 25.926 17.16 8.20 30.51 2.44
3500 4754 2.363306 ATGGGTTCTGTCTGCACAAA 57.637 45.000 0.00 0.00 29.82 2.83
3503 4757 2.079925 GAGAATGGGTTCTGTCTGCAC 58.920 52.381 0.00 0.00 44.57 4.57
3537 4791 3.251571 GGTCTAACATTCGTTTCTCGCT 58.748 45.455 0.00 0.00 39.67 4.93
3538 4792 2.991190 TGGTCTAACATTCGTTTCTCGC 59.009 45.455 0.00 0.00 39.67 5.03
3556 4810 4.081406 TCATGTAAAAGAATGCTGCTGGT 58.919 39.130 0.00 0.00 0.00 4.00
3574 4828 6.436261 GCTGGAATCAATGTTACATCTCATG 58.564 40.000 0.00 0.00 0.00 3.07
3646 4900 5.049612 CACCAATGATACTGCATAGAGCTTG 60.050 44.000 0.00 0.00 45.94 4.01
3702 4956 4.914312 TGGTTACGAGAATACAAAAGCG 57.086 40.909 0.00 0.00 0.00 4.68
3764 5018 2.205074 CGCTGGCTCATTTCTCGTAAT 58.795 47.619 0.00 0.00 0.00 1.89
3809 5063 7.044181 TCCTCATAAGTTCATACAGAGCAAAG 58.956 38.462 0.00 0.00 0.00 2.77
3856 5110 2.761392 TACATCGGTACATCGGTTCG 57.239 50.000 0.00 0.00 0.00 3.95
3881 5135 5.642063 TGGATTAAAACTGAGACTTAAGCCG 59.358 40.000 15.25 0.00 41.73 5.52
3882 5136 7.448748 TTGGATTAAAACTGAGACTTAAGCC 57.551 36.000 14.16 14.16 40.10 4.35
3883 5137 8.568794 AGTTTGGATTAAAACTGAGACTTAAGC 58.431 33.333 1.29 0.00 46.16 3.09
3946 5200 9.915629 ACTATTCTATAGGAACGATTTAAGCAG 57.084 33.333 0.00 0.00 36.70 4.24
3982 5236 0.249911 AGACTGTCCAAAGGTCGCAC 60.250 55.000 3.76 0.00 35.42 5.34
3994 5248 8.817105 GCATCTAGCAGTAGGACAAGACTGTC 62.817 50.000 0.00 0.00 46.33 3.51
3998 5252 3.712187 GCATCTAGCAGTAGGACAAGAC 58.288 50.000 0.00 0.00 44.79 3.01
4126 5380 1.879380 TGTGCTGTGGATTTCTTTCCG 59.121 47.619 0.00 0.00 38.74 4.30
4138 5392 2.078849 TATCGAGTTGGTGTGCTGTG 57.921 50.000 0.00 0.00 0.00 3.66
4140 5394 3.325870 TCTTTATCGAGTTGGTGTGCTG 58.674 45.455 0.00 0.00 0.00 4.41
4141 5395 3.678056 TCTTTATCGAGTTGGTGTGCT 57.322 42.857 0.00 0.00 0.00 4.40
4142 5396 4.946784 AATCTTTATCGAGTTGGTGTGC 57.053 40.909 0.00 0.00 0.00 4.57
4148 5402 9.521503 TGAATCTCAGTAATCTTTATCGAGTTG 57.478 33.333 0.00 0.00 0.00 3.16
4199 5453 8.633561 TGGACACATTTCATATAGTCTACAGAG 58.366 37.037 0.00 0.00 0.00 3.35
4216 5470 2.936993 GCAGGACGAAGATGGACACATT 60.937 50.000 0.00 0.00 37.47 2.71
4225 5479 3.340814 AGAACAATGCAGGACGAAGAT 57.659 42.857 0.00 0.00 0.00 2.40
4235 5489 4.630894 ACAGACGAAAAAGAACAATGCA 57.369 36.364 0.00 0.00 0.00 3.96
4324 5578 2.452295 TTGTTACCGCGGAACATACA 57.548 45.000 35.90 22.71 36.71 2.29
4331 5585 0.952280 TGCATTTTTGTTACCGCGGA 59.048 45.000 35.90 13.31 0.00 5.54
4349 5603 4.254492 TCGATAGATAGGGATCAGTCGTG 58.746 47.826 0.00 0.00 42.67 4.35
4373 5627 8.094798 TCCATAGTTACTAGCTTGTTTTGTTG 57.905 34.615 6.03 0.40 0.00 3.33
4426 5681 2.620585 TGAAAATGAACGGCATGTCACA 59.379 40.909 0.00 0.00 37.28 3.58
4553 5866 4.773323 ACAGGCTTTAAATGAACAGAGC 57.227 40.909 0.00 0.00 0.00 4.09
4554 5867 8.099364 TCTTAACAGGCTTTAAATGAACAGAG 57.901 34.615 0.00 0.00 0.00 3.35
4555 5868 8.635765 ATCTTAACAGGCTTTAAATGAACAGA 57.364 30.769 0.00 0.00 0.00 3.41
4556 5869 9.132521 CAATCTTAACAGGCTTTAAATGAACAG 57.867 33.333 0.00 0.00 0.00 3.16
4557 5870 8.637986 ACAATCTTAACAGGCTTTAAATGAACA 58.362 29.630 0.00 0.00 0.00 3.18
4558 5871 8.915654 CACAATCTTAACAGGCTTTAAATGAAC 58.084 33.333 0.00 0.00 0.00 3.18
4559 5872 8.855110 TCACAATCTTAACAGGCTTTAAATGAA 58.145 29.630 0.00 0.00 0.00 2.57
4560 5873 8.402798 TCACAATCTTAACAGGCTTTAAATGA 57.597 30.769 0.00 0.00 0.00 2.57
4571 5884 3.990469 ACGAGCACTCACAATCTTAACAG 59.010 43.478 0.00 0.00 0.00 3.16
4581 5894 3.527533 AGTTTGTTAACGAGCACTCACA 58.472 40.909 11.76 0.00 39.31 3.58
4647 5960 0.682209 ACCATGCATCTTCCTGTGGC 60.682 55.000 0.00 0.00 0.00 5.01
4648 5961 1.100510 CACCATGCATCTTCCTGTGG 58.899 55.000 0.00 0.00 0.00 4.17
4744 6057 9.438228 TCTTACATGACAATATTTTCGTGGTAA 57.562 29.630 21.92 16.70 33.70 2.85
4762 6075 9.770097 ACAGGACACATATTCTTATCTTACATG 57.230 33.333 0.00 0.00 0.00 3.21
4815 6128 3.450578 ACAAGCTAACGACTTTCACGAA 58.549 40.909 0.00 0.00 34.70 3.85
4824 6137 4.971830 GGGTTTAACAAACAAGCTAACGAC 59.028 41.667 0.00 0.00 43.15 4.34
4862 6175 4.122776 CGAACCCAATCACTCATCTTAGG 58.877 47.826 0.00 0.00 0.00 2.69
4880 6193 5.451828 AGCTCGCTTCTTAATAAACGAAC 57.548 39.130 0.00 0.00 0.00 3.95
4941 6254 6.151648 CCAGATAAAGACCAAAAGCTCATGAA 59.848 38.462 0.00 0.00 0.00 2.57
5019 6332 3.015145 ACAAGGGCGGCCAGGTAT 61.015 61.111 31.59 5.69 0.00 2.73
5087 6400 1.350351 CCCTTGGGATGGCTCAGATAG 59.650 57.143 0.00 0.00 0.00 2.08
5136 6450 5.128499 AGACAATTCAATTTGTGGGTGACAA 59.872 36.000 0.00 0.00 43.11 3.18
5149 6463 9.574516 AGTAAGAACCTAAACAGACAATTCAAT 57.425 29.630 0.00 0.00 0.00 2.57
5266 6581 3.813443 CCATGACTAGCAAACTAGCCAT 58.187 45.455 0.00 0.00 46.83 4.40
5272 6587 1.630369 TGAGGCCATGACTAGCAAACT 59.370 47.619 5.01 0.00 0.00 2.66
5339 6654 2.898729 AGCCGATGTACCATCTTCTG 57.101 50.000 3.03 0.00 0.00 3.02
5362 6677 8.378565 TCTGTGAGAAACTTCTATCTTTCCATT 58.621 33.333 0.00 0.00 37.73 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.