Multiple sequence alignment - TraesCS1B01G059400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G059400 chr1B 100.000 5119 0 0 562 5680 41982903 41988021 0.000000e+00 9454.0
1 TraesCS1B01G059400 chr1B 89.753 1132 57 28 3814 4917 639416042 639414942 0.000000e+00 1393.0
2 TraesCS1B01G059400 chr1B 90.597 670 25 15 576 1219 639418464 639417807 0.000000e+00 854.0
3 TraesCS1B01G059400 chr1B 92.334 587 42 3 5095 5680 639412972 639413556 0.000000e+00 832.0
4 TraesCS1B01G059400 chr1B 85.910 802 66 16 2829 3592 639416912 639416120 0.000000e+00 811.0
5 TraesCS1B01G059400 chr1B 87.231 744 31 26 1130 1841 639417831 639417120 0.000000e+00 789.0
6 TraesCS1B01G059400 chr1B 100.000 258 0 0 1 258 41982342 41982599 1.430000e-130 477.0
7 TraesCS1B01G059400 chr1B 98.214 168 3 0 3647 3814 67053883 67054050 1.550000e-75 294.0
8 TraesCS1B01G059400 chr1B 82.213 253 25 11 4750 4993 41989422 41989181 3.470000e-47 200.0
9 TraesCS1B01G059400 chr1B 86.243 189 10 10 73 258 639419134 639418959 2.090000e-44 191.0
10 TraesCS1B01G059400 chr1B 96.296 54 1 1 2045 2098 639417066 639417014 2.820000e-13 87.9
11 TraesCS1B01G059400 chr1D 91.662 1715 91 31 652 2344 5429936 5428252 0.000000e+00 2327.0
12 TraesCS1B01G059400 chr1D 90.511 1096 69 12 3813 4888 5427024 5425944 0.000000e+00 1415.0
13 TraesCS1B01G059400 chr1D 90.889 911 49 12 2707 3592 5428007 5427106 0.000000e+00 1192.0
14 TraesCS1B01G059400 chr1D 92.675 587 40 3 5095 5680 5424102 5424686 0.000000e+00 843.0
15 TraesCS1B01G059400 chr1D 92.361 288 19 3 5095 5381 5466539 5466254 1.910000e-109 407.0
16 TraesCS1B01G059400 chr1D 91.270 252 22 0 5429 5680 5466256 5466005 1.520000e-90 344.0
17 TraesCS1B01G059400 chr1D 89.510 143 10 4 67 204 5430522 5430380 5.850000e-40 176.0
18 TraesCS1B01G059400 chr1A 91.105 1158 71 13 3892 5032 6792518 6793660 0.000000e+00 1539.0
19 TraesCS1B01G059400 chr1A 86.906 1031 74 38 1329 2324 6789963 6790967 0.000000e+00 1099.0
20 TraesCS1B01G059400 chr1A 89.694 718 46 18 564 1264 6789027 6789733 0.000000e+00 891.0
21 TraesCS1B01G059400 chr1A 93.356 587 36 3 5095 5680 6900331 6899747 0.000000e+00 865.0
22 TraesCS1B01G059400 chr1A 91.823 587 35 4 5095 5680 6914497 6913923 0.000000e+00 806.0
23 TraesCS1B01G059400 chr1A 90.971 587 50 3 5095 5680 6884471 6883887 0.000000e+00 787.0
24 TraesCS1B01G059400 chr1A 91.171 555 41 8 3004 3557 6791794 6792341 0.000000e+00 747.0
25 TraesCS1B01G059400 chr1A 82.019 723 84 30 2845 3534 6911684 6912393 1.780000e-159 573.0
26 TraesCS1B01G059400 chr1A 88.592 412 29 10 4624 5032 6819416 6819812 8.560000e-133 484.0
27 TraesCS1B01G059400 chr1A 88.350 412 30 10 4624 5032 6839903 6840299 3.980000e-131 479.0
28 TraesCS1B01G059400 chr1A 88.107 412 31 10 4624 5032 6806346 6806742 1.850000e-129 473.0
29 TraesCS1B01G059400 chr1A 98.235 170 3 0 3649 3818 526575522 526575691 1.200000e-76 298.0
30 TraesCS1B01G059400 chr1A 92.857 56 3 1 3815 3869 6792464 6792519 4.720000e-11 80.5
31 TraesCS1B01G059400 chrUn 88.350 412 30 11 4624 5032 213186424 213186028 3.980000e-131 479.0
32 TraesCS1B01G059400 chr6D 78.788 594 115 9 5095 5680 34948431 34947841 6.900000e-104 388.0
33 TraesCS1B01G059400 chr6D 85.714 77 10 1 2008 2084 28663627 28663702 4.720000e-11 80.5
34 TraesCS1B01G059400 chr3A 98.802 167 2 0 3649 3815 13084328 13084162 1.200000e-76 298.0
35 TraesCS1B01G059400 chr7B 97.143 175 5 0 3641 3815 657551555 657551381 4.300000e-76 296.0
36 TraesCS1B01G059400 chr4A 97.674 172 3 1 3646 3816 610810744 610810915 1.550000e-75 294.0
37 TraesCS1B01G059400 chr2B 97.661 171 4 0 3644 3814 207716326 207716156 1.550000e-75 294.0
38 TraesCS1B01G059400 chr2B 97.661 171 4 0 3644 3814 207733541 207733371 1.550000e-75 294.0
39 TraesCS1B01G059400 chr3B 97.093 172 5 0 3647 3818 592610642 592610471 2.000000e-74 291.0
40 TraesCS1B01G059400 chr3B 97.110 173 4 1 3644 3815 816613700 816613872 2.000000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G059400 chr1B 41982342 41988021 5679 False 4965.50 9454 100.000000 1 5680 2 chr1B.!!$F3 5679
1 TraesCS1B01G059400 chr1B 639412972 639413556 584 False 832.00 832 92.334000 5095 5680 1 chr1B.!!$F2 585
2 TraesCS1B01G059400 chr1B 639414942 639419134 4192 True 687.65 1393 89.338333 73 4917 6 chr1B.!!$R2 4844
3 TraesCS1B01G059400 chr1D 5425944 5430522 4578 True 1277.50 2327 90.643000 67 4888 4 chr1D.!!$R1 4821
4 TraesCS1B01G059400 chr1D 5424102 5424686 584 False 843.00 843 92.675000 5095 5680 1 chr1D.!!$F1 585
5 TraesCS1B01G059400 chr1D 5466005 5466539 534 True 375.50 407 91.815500 5095 5680 2 chr1D.!!$R2 585
6 TraesCS1B01G059400 chr1A 6789027 6793660 4633 False 871.30 1539 90.346600 564 5032 5 chr1A.!!$F6 4468
7 TraesCS1B01G059400 chr1A 6899747 6900331 584 True 865.00 865 93.356000 5095 5680 1 chr1A.!!$R2 585
8 TraesCS1B01G059400 chr1A 6913923 6914497 574 True 806.00 806 91.823000 5095 5680 1 chr1A.!!$R3 585
9 TraesCS1B01G059400 chr1A 6883887 6884471 584 True 787.00 787 90.971000 5095 5680 1 chr1A.!!$R1 585
10 TraesCS1B01G059400 chr1A 6911684 6912393 709 False 573.00 573 82.019000 2845 3534 1 chr1A.!!$F4 689
11 TraesCS1B01G059400 chr6D 34947841 34948431 590 True 388.00 388 78.788000 5095 5680 1 chr6D.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.108138 GTTGACCATCCTCCACCGAG 60.108 60.0 0.0 0.0 35.72 4.63 F
717 927 0.108138 CCAACATCTCCACCCTCGTC 60.108 60.0 0.0 0.0 0.00 4.20 F
1982 2500 1.999648 TGATGAGCTTGTGGGCTTTT 58.000 45.0 0.0 0.0 43.20 2.27 F
2335 2855 0.109551 CGTCATCGCATCCTATCGCT 60.110 55.0 0.0 0.0 0.00 4.93 F
2344 2864 0.178987 ATCCTATCGCTGGACTCGGT 60.179 55.0 0.0 0.0 36.30 4.69 F
2347 2867 0.248661 CTATCGCTGGACTCGGTGTG 60.249 60.0 0.0 0.0 0.00 3.82 F
3998 4976 0.110486 TTGGGGCAGTCCTCAACTTC 59.890 55.0 0.0 0.0 45.43 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2398 0.178992 CAAGGACCCTCCACAAGCAA 60.179 55.000 0.00 0.00 39.61 3.91 R
2325 2845 0.178987 ACCGAGTCCAGCGATAGGAT 60.179 55.000 0.00 0.00 37.52 3.24 R
3690 4650 0.396139 ATCCGCATGTTGAGCCCATT 60.396 50.000 0.00 0.00 0.00 3.16 R
3693 4653 0.463654 TACATCCGCATGTTGAGCCC 60.464 55.000 0.00 0.00 40.66 5.19 R
3998 4976 1.018910 TGATGCTCATCATGTTGCCG 58.981 50.000 8.37 0.00 42.42 5.69 R
4274 5252 4.178255 GTCATGTCGACGCACGCG 62.178 66.667 11.62 10.36 46.03 6.01 R
5038 6040 0.030092 TGGTGGAAGATAGGAGGGGG 60.030 60.000 0.00 0.00 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.367025 CGTAAGTTGTAACTGCAGGTAGC 59.633 47.826 19.93 11.14 45.96 3.58
45 46 3.214696 GCAGGTAGCAAGGATTATGGT 57.785 47.619 0.00 0.00 44.79 3.55
46 47 3.555966 GCAGGTAGCAAGGATTATGGTT 58.444 45.455 0.00 0.00 44.79 3.67
47 48 3.316308 GCAGGTAGCAAGGATTATGGTTG 59.684 47.826 0.00 0.00 44.79 3.77
48 49 4.780815 CAGGTAGCAAGGATTATGGTTGA 58.219 43.478 0.00 0.00 0.00 3.18
49 50 4.576463 CAGGTAGCAAGGATTATGGTTGAC 59.424 45.833 0.00 0.00 0.00 3.18
50 51 3.883489 GGTAGCAAGGATTATGGTTGACC 59.117 47.826 0.00 0.00 0.00 4.02
60 61 2.074967 TGGTTGACCATCCTCCACC 58.925 57.895 0.00 0.00 42.01 4.61
61 62 1.078426 GGTTGACCATCCTCCACCG 60.078 63.158 0.00 0.00 35.64 4.94
62 63 1.550130 GGTTGACCATCCTCCACCGA 61.550 60.000 0.00 0.00 35.64 4.69
63 64 0.108138 GTTGACCATCCTCCACCGAG 60.108 60.000 0.00 0.00 35.72 4.63
64 65 1.899437 TTGACCATCCTCCACCGAGC 61.899 60.000 0.00 0.00 34.49 5.03
65 66 2.039624 ACCATCCTCCACCGAGCT 59.960 61.111 0.00 0.00 34.49 4.09
120 121 1.972795 TCCACTAAACCCACGCTTAGT 59.027 47.619 0.00 0.00 38.58 2.24
123 124 3.194116 CCACTAAACCCACGCTTAGTAGA 59.806 47.826 0.00 0.00 36.45 2.59
125 126 2.381725 AAACCCACGCTTAGTAGAGC 57.618 50.000 0.00 0.00 39.29 4.09
126 127 1.263356 AACCCACGCTTAGTAGAGCA 58.737 50.000 0.00 0.00 42.83 4.26
132 133 1.475441 CGCTTAGTAGAGCAGCACGC 61.475 60.000 0.00 0.00 42.83 5.34
189 195 4.423209 GCCCCCACTCCTCCTCCT 62.423 72.222 0.00 0.00 0.00 3.69
190 196 2.041405 CCCCCACTCCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
191 197 2.780693 CCCCACTCCTCCTCCTCA 59.219 66.667 0.00 0.00 0.00 3.86
197 203 0.560688 ACTCCTCCTCCTCATCCTCC 59.439 60.000 0.00 0.00 0.00 4.30
207 213 1.703411 CTCATCCTCCTCCTCCTCAC 58.297 60.000 0.00 0.00 0.00 3.51
216 222 2.041405 CCTCCTCACCCTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
217 223 2.041405 CTCCTCACCCTCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
218 224 3.695825 TCCTCACCCTCCTCCCCC 61.696 72.222 0.00 0.00 0.00 5.40
633 828 1.082954 CTTCCCCTCCTTCTCCCCA 59.917 63.158 0.00 0.00 0.00 4.96
666 876 2.607750 GACCAGACCCAGCCCTCA 60.608 66.667 0.00 0.00 0.00 3.86
668 878 2.284921 CCAGACCCAGCCCTCAGA 60.285 66.667 0.00 0.00 0.00 3.27
714 924 1.077429 GGCCAACATCTCCACCCTC 60.077 63.158 0.00 0.00 0.00 4.30
717 927 0.108138 CCAACATCTCCACCCTCGTC 60.108 60.000 0.00 0.00 0.00 4.20
1393 1855 4.885270 CGCCACCCACACCACCAA 62.885 66.667 0.00 0.00 0.00 3.67
1395 1857 2.520741 CCACCCACACCACCAACC 60.521 66.667 0.00 0.00 0.00 3.77
1588 2088 8.550376 GCTATCTTTTCTCTGAATGTCTGAATC 58.450 37.037 0.00 0.00 0.00 2.52
1589 2089 7.862512 ATCTTTTCTCTGAATGTCTGAATCC 57.137 36.000 0.00 0.00 0.00 3.01
1593 2093 4.941657 TCTCTGAATGTCTGAATCCGATG 58.058 43.478 0.00 0.00 0.00 3.84
1662 2168 2.600731 CAGCTCTACCTGAACAACTCG 58.399 52.381 0.00 0.00 34.77 4.18
1849 2364 4.278170 TCCTGATGTTGCCAAAAGTGTAAG 59.722 41.667 0.00 0.00 0.00 2.34
1883 2398 2.867109 ATGGAGCTAGTGTGCACTTT 57.133 45.000 19.41 8.62 42.54 2.66
1945 2460 3.857665 CACATGATCAAATCTGCACAAGC 59.142 43.478 0.00 0.00 42.57 4.01
1982 2500 1.999648 TGATGAGCTTGTGGGCTTTT 58.000 45.000 0.00 0.00 43.20 2.27
1983 2501 3.153369 TGATGAGCTTGTGGGCTTTTA 57.847 42.857 0.00 0.00 43.20 1.52
1984 2502 3.495331 TGATGAGCTTGTGGGCTTTTAA 58.505 40.909 0.00 0.00 43.20 1.52
1985 2503 3.255642 TGATGAGCTTGTGGGCTTTTAAC 59.744 43.478 0.00 0.00 43.20 2.01
2039 2557 8.707938 AAAAGGTTGCATAATATTCTTTCAGC 57.292 30.769 0.00 0.00 0.00 4.26
2155 2674 8.190784 GCATTATTAAGTAGAAAGTTGCATGGT 58.809 33.333 0.00 0.00 0.00 3.55
2204 2723 6.352516 TGCTTTCAGAAGAAAAGAGAGAAGT 58.647 36.000 0.03 0.00 42.78 3.01
2250 2769 9.166173 CTGATTTTGTTATGAACCAGTCATCTA 57.834 33.333 0.00 0.00 44.01 1.98
2262 2782 6.723298 ACCAGTCATCTACTAATCTCTTGG 57.277 41.667 0.00 0.00 35.76 3.61
2268 2788 4.737855 TCTACTAATCTCTTGGCACACC 57.262 45.455 0.00 0.00 39.29 4.16
2315 2835 2.124529 TGGGTTGTCGCTGCACAA 60.125 55.556 11.71 11.71 33.75 3.33
2324 2844 2.202222 GCTGCACAACGTCATCGC 60.202 61.111 0.00 0.00 41.18 4.58
2325 2845 2.953605 GCTGCACAACGTCATCGCA 61.954 57.895 0.00 0.00 41.18 5.10
2329 2849 1.361668 GCACAACGTCATCGCATCCT 61.362 55.000 0.00 0.00 41.18 3.24
2331 2851 2.473816 CACAACGTCATCGCATCCTAT 58.526 47.619 0.00 0.00 41.18 2.57
2333 2853 1.716050 CAACGTCATCGCATCCTATCG 59.284 52.381 0.00 0.00 41.18 2.92
2334 2854 0.387367 ACGTCATCGCATCCTATCGC 60.387 55.000 0.00 0.00 41.18 4.58
2335 2855 0.109551 CGTCATCGCATCCTATCGCT 60.110 55.000 0.00 0.00 0.00 4.93
2336 2856 1.344458 GTCATCGCATCCTATCGCTG 58.656 55.000 0.00 0.00 0.00 5.18
2337 2857 0.244721 TCATCGCATCCTATCGCTGG 59.755 55.000 0.00 0.00 0.00 4.85
2338 2858 0.244721 CATCGCATCCTATCGCTGGA 59.755 55.000 0.00 0.00 38.06 3.86
2339 2859 0.244994 ATCGCATCCTATCGCTGGAC 59.755 55.000 0.00 0.00 36.30 4.02
2340 2860 0.823769 TCGCATCCTATCGCTGGACT 60.824 55.000 0.00 0.00 36.30 3.85
2341 2861 0.387878 CGCATCCTATCGCTGGACTC 60.388 60.000 0.00 0.00 36.30 3.36
2342 2862 0.387878 GCATCCTATCGCTGGACTCG 60.388 60.000 0.00 0.00 36.30 4.18
2343 2863 0.242286 CATCCTATCGCTGGACTCGG 59.758 60.000 0.00 0.00 36.30 4.63
2344 2864 0.178987 ATCCTATCGCTGGACTCGGT 60.179 55.000 0.00 0.00 36.30 4.69
2345 2865 1.101635 TCCTATCGCTGGACTCGGTG 61.102 60.000 0.00 0.00 0.00 4.94
2346 2866 1.384989 CCTATCGCTGGACTCGGTGT 61.385 60.000 0.00 0.00 0.00 4.16
2347 2867 0.248661 CTATCGCTGGACTCGGTGTG 60.249 60.000 0.00 0.00 0.00 3.82
2348 2868 0.678684 TATCGCTGGACTCGGTGTGA 60.679 55.000 0.00 0.00 0.00 3.58
2349 2869 1.532604 ATCGCTGGACTCGGTGTGAA 61.533 55.000 0.00 0.00 0.00 3.18
2350 2870 1.079819 CGCTGGACTCGGTGTGAAT 60.080 57.895 0.00 0.00 0.00 2.57
2367 2887 8.601476 CGGTGTGAATCTTGATATGATGATATG 58.399 37.037 0.00 0.00 0.00 1.78
2377 3022 9.668497 CTTGATATGATGATATGTTGATGGACT 57.332 33.333 0.00 0.00 0.00 3.85
2389 3034 4.398988 TGTTGATGGACTTGGTGCATTATC 59.601 41.667 6.17 3.04 44.19 1.75
2392 3037 5.015515 TGATGGACTTGGTGCATTATCAAA 58.984 37.500 6.17 0.00 44.19 2.69
2394 3039 5.327616 TGGACTTGGTGCATTATCAAATG 57.672 39.130 0.00 0.00 44.53 2.32
2406 3051 5.526111 GCATTATCAAATGGAAAGCTGCATT 59.474 36.000 1.02 0.00 44.69 3.56
2407 3052 6.292703 GCATTATCAAATGGAAAGCTGCATTC 60.293 38.462 8.99 8.99 42.24 2.67
2408 3053 6.534475 TTATCAAATGGAAAGCTGCATTCT 57.466 33.333 16.06 0.00 42.24 2.40
2409 3054 4.877378 TCAAATGGAAAGCTGCATTCTT 57.123 36.364 16.06 2.47 42.24 2.52
2410 3055 5.981088 TCAAATGGAAAGCTGCATTCTTA 57.019 34.783 16.06 7.39 42.24 2.10
2411 3056 5.957798 TCAAATGGAAAGCTGCATTCTTAG 58.042 37.500 16.06 4.33 42.24 2.18
2412 3057 5.711506 TCAAATGGAAAGCTGCATTCTTAGA 59.288 36.000 16.06 6.24 42.24 2.10
2413 3058 6.209192 TCAAATGGAAAGCTGCATTCTTAGAA 59.791 34.615 16.06 0.00 42.24 2.10
2414 3059 6.594788 AATGGAAAGCTGCATTCTTAGAAA 57.405 33.333 16.06 0.00 39.17 2.52
2415 3060 5.633830 TGGAAAGCTGCATTCTTAGAAAG 57.366 39.130 16.06 0.00 0.00 2.62
2416 3061 5.316167 TGGAAAGCTGCATTCTTAGAAAGA 58.684 37.500 16.06 0.00 35.26 2.52
2417 3062 5.948162 TGGAAAGCTGCATTCTTAGAAAGAT 59.052 36.000 16.06 0.00 37.38 2.40
2418 3063 6.127814 TGGAAAGCTGCATTCTTAGAAAGATG 60.128 38.462 16.06 0.00 37.38 2.90
2419 3064 4.897025 AGCTGCATTCTTAGAAAGATGC 57.103 40.909 10.94 10.94 39.90 3.91
2420 3065 4.267536 AGCTGCATTCTTAGAAAGATGCA 58.732 39.130 17.31 17.31 43.29 3.96
2421 3066 4.888239 AGCTGCATTCTTAGAAAGATGCAT 59.112 37.500 18.23 0.00 43.84 3.96
2422 3067 4.976731 GCTGCATTCTTAGAAAGATGCATG 59.023 41.667 18.23 14.06 43.84 4.06
2437 3082 3.581024 TGCATGGCATTCTTTCAGTTC 57.419 42.857 0.00 0.00 31.71 3.01
2447 3099 7.161829 GCATTCTTTCAGTTCAATGCATATG 57.838 36.000 0.00 0.00 46.87 1.78
2476 3128 8.837389 GCTTTCAGAAGTAAAAAGAGAAACCTA 58.163 33.333 0.00 0.00 35.25 3.08
2489 3147 9.945904 AAAAGAGAAACCTATTTTACGAGATCT 57.054 29.630 0.00 0.00 34.45 2.75
2490 3148 9.945904 AAAGAGAAACCTATTTTACGAGATCTT 57.054 29.630 0.00 0.00 0.00 2.40
2506 3164 6.183360 ACGAGATCTTATGTTATTCCGAACCA 60.183 38.462 0.00 0.00 0.00 3.67
2507 3165 6.700081 CGAGATCTTATGTTATTCCGAACCAA 59.300 38.462 0.00 0.00 0.00 3.67
2508 3166 7.306632 CGAGATCTTATGTTATTCCGAACCAAC 60.307 40.741 0.00 1.97 0.00 3.77
2509 3167 6.766467 AGATCTTATGTTATTCCGAACCAACC 59.234 38.462 0.00 0.00 0.00 3.77
2510 3168 5.806818 TCTTATGTTATTCCGAACCAACCA 58.193 37.500 5.43 0.00 0.00 3.67
2511 3169 6.419791 TCTTATGTTATTCCGAACCAACCAT 58.580 36.000 5.43 0.00 0.00 3.55
2512 3170 6.540914 TCTTATGTTATTCCGAACCAACCATC 59.459 38.462 5.43 0.00 0.00 3.51
2513 3171 4.295141 TGTTATTCCGAACCAACCATCT 57.705 40.909 5.43 0.00 0.00 2.90
2514 3172 4.006989 TGTTATTCCGAACCAACCATCTG 58.993 43.478 5.43 0.00 0.00 2.90
2515 3173 2.879103 ATTCCGAACCAACCATCTGT 57.121 45.000 0.00 0.00 0.00 3.41
2516 3174 1.890876 TTCCGAACCAACCATCTGTG 58.109 50.000 0.00 0.00 0.00 3.66
2524 3182 4.581309 ACCAACCATCTGTGAATCTCAT 57.419 40.909 0.00 0.00 0.00 2.90
2526 3184 3.630769 CCAACCATCTGTGAATCTCATGG 59.369 47.826 4.05 4.05 31.05 3.66
2529 3187 3.117625 ACCATCTGTGAATCTCATGGCAT 60.118 43.478 0.00 0.00 28.41 4.40
2530 3188 3.253432 CCATCTGTGAATCTCATGGCATG 59.747 47.826 21.42 21.42 0.00 4.06
2531 3189 2.294979 TCTGTGAATCTCATGGCATGC 58.705 47.619 22.56 9.90 0.00 4.06
2555 3213 1.942657 CCGTTGATAGCAGGGTTGATG 59.057 52.381 0.00 0.00 0.00 3.07
2556 3214 2.419990 CCGTTGATAGCAGGGTTGATGA 60.420 50.000 0.00 0.00 0.00 2.92
2558 3216 3.310774 CGTTGATAGCAGGGTTGATGAAG 59.689 47.826 0.00 0.00 0.00 3.02
2559 3217 4.517285 GTTGATAGCAGGGTTGATGAAGA 58.483 43.478 0.00 0.00 0.00 2.87
2561 3219 4.965814 TGATAGCAGGGTTGATGAAGATC 58.034 43.478 0.00 0.00 0.00 2.75
2562 3220 4.409901 TGATAGCAGGGTTGATGAAGATCA 59.590 41.667 0.00 0.00 36.78 2.92
2563 3221 3.726557 AGCAGGGTTGATGAAGATCAA 57.273 42.857 0.00 0.00 44.73 2.57
2571 3229 3.354948 TGATGAAGATCAACCTGTGGG 57.645 47.619 0.00 0.00 35.55 4.61
2585 3243 2.115911 GTGGGTTGTCGCCACACAA 61.116 57.895 0.00 0.00 36.02 3.33
2590 3248 2.010670 TTGTCGCCACACAACTTCG 58.989 52.632 0.00 0.00 31.08 3.79
2653 3311 7.696992 TTTGTGTTTATCAAATACTCCCTCC 57.303 36.000 1.20 0.00 34.11 4.30
2656 3314 5.878669 GTGTTTATCAAATACTCCCTCCGTT 59.121 40.000 0.00 0.00 30.81 4.44
2658 3316 5.943349 TTATCAAATACTCCCTCCGTTCA 57.057 39.130 0.00 0.00 0.00 3.18
2659 3317 6.494666 TTATCAAATACTCCCTCCGTTCAT 57.505 37.500 0.00 0.00 0.00 2.57
2660 3318 7.606135 TTATCAAATACTCCCTCCGTTCATA 57.394 36.000 0.00 0.00 0.00 2.15
2663 3321 6.895782 TCAAATACTCCCTCCGTTCATAATT 58.104 36.000 0.00 0.00 0.00 1.40
2665 3323 7.832187 TCAAATACTCCCTCCGTTCATAATTTT 59.168 33.333 0.00 0.00 0.00 1.82
2666 3324 9.116067 CAAATACTCCCTCCGTTCATAATTTTA 57.884 33.333 0.00 0.00 0.00 1.52
2669 3327 6.718294 ACTCCCTCCGTTCATAATTTTAAGT 58.282 36.000 0.00 0.00 0.00 2.24
2671 3329 7.120726 ACTCCCTCCGTTCATAATTTTAAGTTG 59.879 37.037 0.00 0.00 0.00 3.16
2672 3330 7.169591 TCCCTCCGTTCATAATTTTAAGTTGA 58.830 34.615 0.00 0.00 0.00 3.18
2673 3331 7.832187 TCCCTCCGTTCATAATTTTAAGTTGAT 59.168 33.333 0.00 0.00 0.00 2.57
2674 3332 7.915397 CCCTCCGTTCATAATTTTAAGTTGATG 59.085 37.037 0.00 0.00 0.00 3.07
2676 3334 8.050778 TCCGTTCATAATTTTAAGTTGATGCT 57.949 30.769 0.00 0.00 0.00 3.79
2678 3336 7.967854 CCGTTCATAATTTTAAGTTGATGCTGA 59.032 33.333 0.00 0.00 0.00 4.26
2701 3472 3.318557 TGCTGATGCTTTCATGTTGACAA 59.681 39.130 0.00 0.00 40.48 3.18
2773 3648 9.908152 TGTATATATAGATGTTTGGTTCAGACG 57.092 33.333 0.00 0.00 0.00 4.18
2938 3820 6.809689 TGCTTTATTTCATTTGTGCTCATCAG 59.190 34.615 0.00 0.00 0.00 2.90
2988 3870 2.094659 CCTTACCTGCGAGCACACG 61.095 63.158 0.00 0.00 0.00 4.49
3039 3941 9.801714 GTTTCACAATAATCAGCATTTTTCTTG 57.198 29.630 0.00 0.00 0.00 3.02
3150 4069 2.897780 GGCAGTTGCGCATTTTTCA 58.102 47.368 12.75 0.00 43.26 2.69
3158 4078 5.175491 CAGTTGCGCATTTTTCAGTTTACAT 59.825 36.000 12.75 0.00 0.00 2.29
3250 4171 3.976793 TTGCTGCTTTTCTCACTCTTG 57.023 42.857 0.00 0.00 0.00 3.02
3259 4180 5.639506 GCTTTTCTCACTCTTGTATGCTACA 59.360 40.000 0.00 0.00 36.79 2.74
3269 4190 8.598924 CACTCTTGTATGCTACATTCTTGTTAG 58.401 37.037 0.00 0.00 38.68 2.34
3321 4242 0.674269 GCAATGCACATGGTTTGGGG 60.674 55.000 0.00 0.00 0.00 4.96
3327 4248 1.955208 GCACATGGTTTGGGGGTAGAG 60.955 57.143 0.00 0.00 0.00 2.43
3557 4478 4.174762 GCTACTCTCGAGGTAAAGTTTGG 58.825 47.826 13.56 4.26 0.00 3.28
3592 4524 5.452078 TCTGTCCAAAATGTGTTTCATCC 57.548 39.130 0.00 0.00 35.48 3.51
3593 4525 4.280677 TCTGTCCAAAATGTGTTTCATCCC 59.719 41.667 0.00 0.00 35.48 3.85
3596 4528 4.770010 GTCCAAAATGTGTTTCATCCCCTA 59.230 41.667 0.00 0.00 35.48 3.53
3597 4529 5.422012 GTCCAAAATGTGTTTCATCCCCTAT 59.578 40.000 0.00 0.00 35.48 2.57
3599 4531 6.070881 TCCAAAATGTGTTTCATCCCCTATTG 60.071 38.462 0.00 0.00 35.48 1.90
3600 4532 5.937975 AAATGTGTTTCATCCCCTATTGG 57.062 39.130 0.00 0.00 35.48 3.16
3602 4534 2.311542 TGTGTTTCATCCCCTATTGGCT 59.688 45.455 0.00 0.00 0.00 4.75
3604 4536 3.883489 GTGTTTCATCCCCTATTGGCTAC 59.117 47.826 0.00 0.00 0.00 3.58
3606 4538 4.167892 TGTTTCATCCCCTATTGGCTACAT 59.832 41.667 0.00 0.00 0.00 2.29
3616 4575 6.543831 CCCCTATTGGCTACATATATTTGCTC 59.456 42.308 0.00 0.00 0.00 4.26
3621 4580 5.798132 TGGCTACATATATTTGCTCCAGAG 58.202 41.667 0.00 0.00 0.00 3.35
3657 4617 7.235804 AGAATCTTCTACTGTATACTCCCTCC 58.764 42.308 4.17 0.00 35.34 4.30
3658 4618 4.970711 TCTTCTACTGTATACTCCCTCCG 58.029 47.826 4.17 0.00 0.00 4.63
3659 4619 4.411540 TCTTCTACTGTATACTCCCTCCGT 59.588 45.833 4.17 0.00 0.00 4.69
3660 4620 4.785346 TCTACTGTATACTCCCTCCGTT 57.215 45.455 4.17 0.00 0.00 4.44
3661 4621 4.712476 TCTACTGTATACTCCCTCCGTTC 58.288 47.826 4.17 0.00 0.00 3.95
3662 4622 2.664015 ACTGTATACTCCCTCCGTTCC 58.336 52.381 4.17 0.00 0.00 3.62
3663 4623 1.962100 CTGTATACTCCCTCCGTTCCC 59.038 57.143 4.17 0.00 0.00 3.97
3664 4624 1.288633 TGTATACTCCCTCCGTTCCCA 59.711 52.381 4.17 0.00 0.00 4.37
3665 4625 2.292389 TGTATACTCCCTCCGTTCCCAA 60.292 50.000 4.17 0.00 0.00 4.12
3666 4626 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3667 4627 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
3668 4628 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3669 4629 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
3670 4630 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
3671 4631 2.238898 CTCCCTCCGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
3672 4632 2.026636 TCCCTCCGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
3673 4633 2.290705 CCCTCCGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
3674 4634 3.007635 CCTCCGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
3675 4635 3.307480 CCTCCGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3676 4636 4.324267 CTCCGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3677 4637 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
3678 4638 4.758165 TCCGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
3679 4639 4.760204 CCGTTCCCAAATACTTGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
3680 4640 5.935789 CCGTTCCCAAATACTTGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
3681 4641 6.092259 CCGTTCCCAAATACTTGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
3682 4642 6.092259 CGTTCCCAAATACTTGTCTTTCTAGG 59.908 42.308 0.00 0.00 0.00 3.02
3683 4643 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
3684 4644 5.013704 TCCCAAATACTTGTCTTTCTAGGCA 59.986 40.000 0.00 0.00 33.22 4.75
3685 4645 5.888161 CCCAAATACTTGTCTTTCTAGGCAT 59.112 40.000 0.00 0.00 35.56 4.40
3686 4646 6.378280 CCCAAATACTTGTCTTTCTAGGCATT 59.622 38.462 0.00 0.00 35.56 3.56
3687 4647 7.093771 CCCAAATACTTGTCTTTCTAGGCATTT 60.094 37.037 0.00 0.00 35.56 2.32
3688 4648 7.970614 CCAAATACTTGTCTTTCTAGGCATTTC 59.029 37.037 0.00 0.00 35.56 2.17
3689 4649 8.514594 CAAATACTTGTCTTTCTAGGCATTTCA 58.485 33.333 0.00 0.00 35.56 2.69
3690 4650 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3691 4651 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
3692 4652 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
3693 4653 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
3694 4654 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
3695 4655 5.185635 TGTCTTTCTAGGCATTTCAAATGGG 59.814 40.000 12.14 0.00 29.10 4.00
3696 4656 4.160252 TCTTTCTAGGCATTTCAAATGGGC 59.840 41.667 12.14 5.32 0.00 5.36
3697 4657 3.386932 TCTAGGCATTTCAAATGGGCT 57.613 42.857 12.14 11.77 39.64 5.19
3698 4658 3.290710 TCTAGGCATTTCAAATGGGCTC 58.709 45.455 12.14 0.00 37.36 4.70
3699 4659 1.941377 AGGCATTTCAAATGGGCTCA 58.059 45.000 12.14 0.00 0.00 4.26
3700 4660 2.259012 AGGCATTTCAAATGGGCTCAA 58.741 42.857 12.14 0.00 0.00 3.02
3701 4661 2.027837 AGGCATTTCAAATGGGCTCAAC 60.028 45.455 12.14 0.00 0.00 3.18
3702 4662 2.289569 GGCATTTCAAATGGGCTCAACA 60.290 45.455 12.14 0.00 0.00 3.33
3703 4663 3.602483 GCATTTCAAATGGGCTCAACAT 58.398 40.909 12.14 0.00 0.00 2.71
3704 4664 3.372822 GCATTTCAAATGGGCTCAACATG 59.627 43.478 12.14 0.00 0.00 3.21
3705 4665 2.747396 TTCAAATGGGCTCAACATGC 57.253 45.000 0.00 0.00 0.00 4.06
3706 4666 0.527113 TCAAATGGGCTCAACATGCG 59.473 50.000 0.00 0.00 0.00 4.73
3707 4667 0.458889 CAAATGGGCTCAACATGCGG 60.459 55.000 0.00 0.00 0.00 5.69
3708 4668 0.611618 AAATGGGCTCAACATGCGGA 60.612 50.000 0.00 0.00 0.00 5.54
3709 4669 0.396139 AATGGGCTCAACATGCGGAT 60.396 50.000 0.00 0.00 0.00 4.18
3710 4670 1.105167 ATGGGCTCAACATGCGGATG 61.105 55.000 16.07 16.07 35.49 3.51
3711 4671 1.750399 GGGCTCAACATGCGGATGT 60.750 57.895 17.64 17.64 45.24 3.06
3712 4672 0.463654 GGGCTCAACATGCGGATGTA 60.464 55.000 23.47 7.68 42.30 2.29
3713 4673 1.597742 GGCTCAACATGCGGATGTAT 58.402 50.000 23.47 10.57 42.30 2.29
3714 4674 1.265095 GGCTCAACATGCGGATGTATG 59.735 52.381 23.47 20.64 42.30 2.39
3725 4685 7.601073 CATGCGGATGTATGTAGACATATTT 57.399 36.000 9.01 0.00 40.18 1.40
3726 4686 8.032952 CATGCGGATGTATGTAGACATATTTT 57.967 34.615 9.01 0.00 40.18 1.82
3727 4687 9.150348 CATGCGGATGTATGTAGACATATTTTA 57.850 33.333 9.01 0.00 40.18 1.52
3728 4688 9.719355 ATGCGGATGTATGTAGACATATTTTAA 57.281 29.630 5.69 0.00 40.18 1.52
3729 4689 9.549078 TGCGGATGTATGTAGACATATTTTAAA 57.451 29.630 5.69 0.00 40.18 1.52
3750 4710 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
3751 4711 6.882610 AAGTGTAGATTCACTCATTTTGCA 57.117 33.333 0.00 0.00 46.25 4.08
3752 4712 6.246420 AGTGTAGATTCACTCATTTTGCAC 57.754 37.500 0.00 0.00 44.07 4.57
3753 4713 5.182001 AGTGTAGATTCACTCATTTTGCACC 59.818 40.000 0.00 0.00 44.07 5.01
3754 4714 3.837213 AGATTCACTCATTTTGCACCG 57.163 42.857 0.00 0.00 0.00 4.94
3755 4715 3.149196 AGATTCACTCATTTTGCACCGT 58.851 40.909 0.00 0.00 0.00 4.83
3756 4716 4.323417 AGATTCACTCATTTTGCACCGTA 58.677 39.130 0.00 0.00 0.00 4.02
3757 4717 4.943705 AGATTCACTCATTTTGCACCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
3758 4718 4.418013 TTCACTCATTTTGCACCGTATG 57.582 40.909 0.00 0.00 0.00 2.39
3759 4719 3.407698 TCACTCATTTTGCACCGTATGT 58.592 40.909 0.00 0.00 0.00 2.29
3760 4720 4.570930 TCACTCATTTTGCACCGTATGTA 58.429 39.130 0.00 0.00 0.00 2.29
3761 4721 4.629634 TCACTCATTTTGCACCGTATGTAG 59.370 41.667 0.00 0.00 0.00 2.74
3762 4722 4.391830 CACTCATTTTGCACCGTATGTAGT 59.608 41.667 0.00 0.00 0.00 2.73
3763 4723 4.630069 ACTCATTTTGCACCGTATGTAGTC 59.370 41.667 0.00 0.00 0.00 2.59
3764 4724 4.570930 TCATTTTGCACCGTATGTAGTCA 58.429 39.130 0.00 0.00 0.00 3.41
3765 4725 4.390603 TCATTTTGCACCGTATGTAGTCAC 59.609 41.667 0.00 0.00 0.00 3.67
3766 4726 3.671008 TTTGCACCGTATGTAGTCACT 57.329 42.857 0.00 0.00 0.00 3.41
3767 4727 3.671008 TTGCACCGTATGTAGTCACTT 57.329 42.857 0.00 0.00 0.00 3.16
3768 4728 2.954316 TGCACCGTATGTAGTCACTTG 58.046 47.619 0.00 0.00 0.00 3.16
3769 4729 2.297880 TGCACCGTATGTAGTCACTTGT 59.702 45.455 0.00 0.00 0.00 3.16
3770 4730 3.243941 TGCACCGTATGTAGTCACTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
3771 4731 3.122948 GCACCGTATGTAGTCACTTGTTG 59.877 47.826 0.00 0.00 0.00 3.33
3772 4732 4.552355 CACCGTATGTAGTCACTTGTTGA 58.448 43.478 0.00 0.00 0.00 3.18
3773 4733 4.986034 CACCGTATGTAGTCACTTGTTGAA 59.014 41.667 0.00 0.00 35.39 2.69
3774 4734 5.464057 CACCGTATGTAGTCACTTGTTGAAA 59.536 40.000 0.00 0.00 35.39 2.69
3775 4735 6.147164 CACCGTATGTAGTCACTTGTTGAAAT 59.853 38.462 0.00 0.00 35.39 2.17
3776 4736 6.367969 ACCGTATGTAGTCACTTGTTGAAATC 59.632 38.462 0.00 0.00 35.39 2.17
3777 4737 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3778 4738 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3779 4739 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3780 4740 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3781 4741 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3782 4742 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3783 4743 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3784 4744 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3785 4745 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3786 4746 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3787 4747 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3788 4748 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3789 4749 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3790 4750 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
3791 4751 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3802 4762 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
3803 4763 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
3804 4764 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3805 4765 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3806 4766 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3807 4767 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3808 4768 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3809 4769 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3810 4770 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3811 4771 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
3812 4772 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
3813 4773 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
3814 4774 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
3815 4775 2.850695 AGGAACGGAGGGAGTAGATT 57.149 50.000 0.00 0.00 0.00 2.40
3816 4776 3.117552 AGGAACGGAGGGAGTAGATTT 57.882 47.619 0.00 0.00 0.00 2.17
3817 4777 3.451890 AGGAACGGAGGGAGTAGATTTT 58.548 45.455 0.00 0.00 0.00 1.82
3818 4778 3.197983 AGGAACGGAGGGAGTAGATTTTG 59.802 47.826 0.00 0.00 0.00 2.44
3819 4779 3.532542 GAACGGAGGGAGTAGATTTTGG 58.467 50.000 0.00 0.00 0.00 3.28
3820 4780 2.547990 ACGGAGGGAGTAGATTTTGGT 58.452 47.619 0.00 0.00 0.00 3.67
3821 4781 2.236395 ACGGAGGGAGTAGATTTTGGTG 59.764 50.000 0.00 0.00 0.00 4.17
3822 4782 2.644676 GGAGGGAGTAGATTTTGGTGC 58.355 52.381 0.00 0.00 0.00 5.01
3823 4783 2.026262 GGAGGGAGTAGATTTTGGTGCA 60.026 50.000 0.00 0.00 0.00 4.57
3824 4784 3.372025 GGAGGGAGTAGATTTTGGTGCAT 60.372 47.826 0.00 0.00 0.00 3.96
3880 4840 4.060205 GCCATGATTTTTGTTGCTGTTCT 58.940 39.130 0.00 0.00 0.00 3.01
3882 4842 4.687483 CCATGATTTTTGTTGCTGTTCTCC 59.313 41.667 0.00 0.00 0.00 3.71
3884 4844 4.935702 TGATTTTTGTTGCTGTTCTCCTG 58.064 39.130 0.00 0.00 0.00 3.86
3885 4845 2.869233 TTTTGTTGCTGTTCTCCTGC 57.131 45.000 0.00 0.00 38.42 4.85
3895 4855 4.877823 TGCTGTTCTCCTGCTGTTATTATG 59.122 41.667 0.00 0.00 38.70 1.90
3998 4976 0.110486 TTGGGGCAGTCCTCAACTTC 59.890 55.000 0.00 0.00 45.43 3.01
4085 5063 3.119602 TGAAGATAGTCGACGTCAAAGGG 60.120 47.826 17.16 0.00 0.00 3.95
4186 5164 2.507102 CAAGACGGACGCGAGCAT 60.507 61.111 15.93 0.00 0.00 3.79
4187 5165 2.507102 AAGACGGACGCGAGCATG 60.507 61.111 15.93 3.40 0.00 4.06
4274 5252 1.973812 GACCAGCACCAAGAAGGCC 60.974 63.158 0.00 0.00 43.14 5.19
4279 5257 3.726517 CACCAAGAAGGCCGCGTG 61.727 66.667 4.92 2.02 43.14 5.34
4559 5537 1.831580 GCTTGATCAGGGTCTTTGCT 58.168 50.000 6.99 0.00 0.00 3.91
4598 5576 1.439228 CATGCTCGACCGGATCTGT 59.561 57.895 9.46 0.00 0.00 3.41
4686 5676 3.449227 CGACGCCCTGAGCCAGTA 61.449 66.667 2.18 0.00 38.78 2.74
4850 5850 9.095065 GTAGTATGTTGTATAAAGAACACTGGG 57.905 37.037 0.00 0.00 41.21 4.45
4888 5889 8.414003 TCAGCATGTCAGGTTATTAACTACTAG 58.586 37.037 6.52 0.00 37.40 2.57
4889 5890 8.198109 CAGCATGTCAGGTTATTAACTACTAGT 58.802 37.037 0.00 0.00 0.00 2.57
4890 5891 9.417561 AGCATGTCAGGTTATTAACTACTAGTA 57.582 33.333 1.89 1.89 0.00 1.82
4929 5930 2.216046 CTATGGCTATGCTGTGTGGTG 58.784 52.381 0.00 0.00 0.00 4.17
4934 5935 1.303236 TATGCTGTGTGGTGCCACC 60.303 57.895 17.65 7.01 45.63 4.61
4944 5945 1.098712 TGGTGCCACCGTCTGTTTTC 61.099 55.000 9.78 0.00 42.58 2.29
4959 5961 6.531948 CGTCTGTTTTCCTCTTAGGTAAGATG 59.468 42.308 0.00 0.00 41.12 2.90
4974 5976 5.882557 AGGTAAGATGGCATTGTTCAGTTAG 59.117 40.000 0.00 0.00 0.00 2.34
4985 5987 6.529125 GCATTGTTCAGTTAGACATGGAATTG 59.471 38.462 0.00 0.00 0.00 2.32
4994 5996 6.599638 AGTTAGACATGGAATTGCTACCTTTC 59.400 38.462 0.00 0.00 0.00 2.62
4995 5997 4.922206 AGACATGGAATTGCTACCTTTCA 58.078 39.130 0.00 0.00 0.00 2.69
5008 6010 6.866480 TGCTACCTTTCATTTTTCATCCATC 58.134 36.000 0.00 0.00 0.00 3.51
5013 6015 6.097412 ACCTTTCATTTTTCATCCATCTAGCC 59.903 38.462 0.00 0.00 0.00 3.93
5027 6029 3.011566 TCTAGCCTCCTCTCTCTTGTG 57.988 52.381 0.00 0.00 0.00 3.33
5032 6034 2.224402 GCCTCCTCTCTCTTGTGTTGTT 60.224 50.000 0.00 0.00 0.00 2.83
5033 6035 3.397482 CCTCCTCTCTCTTGTGTTGTTG 58.603 50.000 0.00 0.00 0.00 3.33
5034 6036 3.181461 CCTCCTCTCTCTTGTGTTGTTGT 60.181 47.826 0.00 0.00 0.00 3.32
5035 6037 4.054671 CTCCTCTCTCTTGTGTTGTTGTC 58.945 47.826 0.00 0.00 0.00 3.18
5036 6038 2.797156 CCTCTCTCTTGTGTTGTTGTCG 59.203 50.000 0.00 0.00 0.00 4.35
5037 6039 2.201732 TCTCTCTTGTGTTGTTGTCGC 58.798 47.619 0.00 0.00 0.00 5.19
5038 6040 1.261619 CTCTCTTGTGTTGTTGTCGCC 59.738 52.381 0.00 0.00 0.00 5.54
5039 6041 0.307760 CTCTTGTGTTGTTGTCGCCC 59.692 55.000 0.00 0.00 0.00 6.13
5040 6042 1.098712 TCTTGTGTTGTTGTCGCCCC 61.099 55.000 0.00 0.00 0.00 5.80
5041 6043 2.070654 CTTGTGTTGTTGTCGCCCCC 62.071 60.000 0.00 0.00 0.00 5.40
5056 6058 2.855669 CCCCCTCCTATCTTCCACC 58.144 63.158 0.00 0.00 0.00 4.61
5057 6059 0.030092 CCCCCTCCTATCTTCCACCA 60.030 60.000 0.00 0.00 0.00 4.17
5058 6060 1.416608 CCCCCTCCTATCTTCCACCAT 60.417 57.143 0.00 0.00 0.00 3.55
5059 6061 1.981495 CCCCTCCTATCTTCCACCATC 59.019 57.143 0.00 0.00 0.00 3.51
5060 6062 1.620819 CCCTCCTATCTTCCACCATCG 59.379 57.143 0.00 0.00 0.00 3.84
5061 6063 2.320781 CCTCCTATCTTCCACCATCGT 58.679 52.381 0.00 0.00 0.00 3.73
5062 6064 2.700897 CCTCCTATCTTCCACCATCGTT 59.299 50.000 0.00 0.00 0.00 3.85
5063 6065 3.243907 CCTCCTATCTTCCACCATCGTTC 60.244 52.174 0.00 0.00 0.00 3.95
5064 6066 3.639094 CTCCTATCTTCCACCATCGTTCT 59.361 47.826 0.00 0.00 0.00 3.01
5065 6067 4.030913 TCCTATCTTCCACCATCGTTCTT 58.969 43.478 0.00 0.00 0.00 2.52
5066 6068 4.099573 TCCTATCTTCCACCATCGTTCTTC 59.900 45.833 0.00 0.00 0.00 2.87
5067 6069 2.762535 TCTTCCACCATCGTTCTTCC 57.237 50.000 0.00 0.00 0.00 3.46
5068 6070 2.257207 TCTTCCACCATCGTTCTTCCT 58.743 47.619 0.00 0.00 0.00 3.36
5069 6071 2.233922 TCTTCCACCATCGTTCTTCCTC 59.766 50.000 0.00 0.00 0.00 3.71
5070 6072 0.902531 TCCACCATCGTTCTTCCTCC 59.097 55.000 0.00 0.00 0.00 4.30
5071 6073 0.460284 CCACCATCGTTCTTCCTCCG 60.460 60.000 0.00 0.00 0.00 4.63
5072 6074 0.530744 CACCATCGTTCTTCCTCCGA 59.469 55.000 0.00 0.00 34.79 4.55
5073 6075 0.818296 ACCATCGTTCTTCCTCCGAG 59.182 55.000 0.00 0.00 33.66 4.63
5074 6076 1.103803 CCATCGTTCTTCCTCCGAGA 58.896 55.000 0.00 0.00 33.66 4.04
5075 6077 1.683917 CCATCGTTCTTCCTCCGAGAT 59.316 52.381 0.00 0.00 33.66 2.75
5076 6078 2.101582 CCATCGTTCTTCCTCCGAGATT 59.898 50.000 0.00 0.00 33.66 2.40
5077 6079 3.430929 CCATCGTTCTTCCTCCGAGATTT 60.431 47.826 0.00 0.00 33.66 2.17
5078 6080 3.955650 TCGTTCTTCCTCCGAGATTTT 57.044 42.857 0.00 0.00 0.00 1.82
5079 6081 4.267349 TCGTTCTTCCTCCGAGATTTTT 57.733 40.909 0.00 0.00 0.00 1.94
5113 6115 9.981460 ATATAGAAAAGAAGTCCATCAAAGGTT 57.019 29.630 0.00 0.00 0.00 3.50
5114 6116 6.396829 AGAAAAGAAGTCCATCAAAGGTTG 57.603 37.500 0.00 0.00 0.00 3.77
5115 6117 6.129179 AGAAAAGAAGTCCATCAAAGGTTGA 58.871 36.000 0.00 0.00 45.01 3.18
5116 6118 5.774498 AAAGAAGTCCATCAAAGGTTGAC 57.226 39.130 0.00 0.00 43.48 3.18
5118 6120 4.792068 AGAAGTCCATCAAAGGTTGACAA 58.208 39.130 0.00 0.00 43.48 3.18
5119 6121 4.823989 AGAAGTCCATCAAAGGTTGACAAG 59.176 41.667 0.00 0.00 43.48 3.16
5173 6175 1.442526 CCAATCTGCGATGAGGCACC 61.443 60.000 0.00 0.00 38.17 5.01
5181 6183 1.522668 CGATGAGGCACCAAGAACAA 58.477 50.000 0.00 0.00 0.00 2.83
5192 6194 3.504906 CACCAAGAACAATGTCATGCTCT 59.495 43.478 0.00 0.00 0.00 4.09
5254 6256 0.533032 AGTTTGTAGCGAGAGGGAGC 59.467 55.000 0.00 0.00 0.00 4.70
5297 6305 3.005897 GCGCAGAGATAGGATTCTGGTAA 59.994 47.826 0.30 0.00 40.85 2.85
5389 6397 4.635765 ACAATCCGTCATGGTGATGTTAAG 59.364 41.667 0.00 0.00 39.52 1.85
5459 6467 3.350219 TTGGGACATCAAAGCTACTCC 57.650 47.619 0.00 0.00 39.30 3.85
5564 6572 2.164624 ACACAGAAGAGCGATGTCTACC 59.835 50.000 0.00 0.00 0.00 3.18
5582 6590 1.801913 CGCTTCGGAGTTGTCCTCG 60.802 63.158 0.00 0.00 41.34 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.565789 GCAGTTACAACTTACGTACTGTACAAC 60.566 40.741 17.35 10.31 37.08 3.32
1 2 6.417635 GCAGTTACAACTTACGTACTGTACAA 59.582 38.462 17.35 4.91 37.08 2.41
2 3 5.914635 GCAGTTACAACTTACGTACTGTACA 59.085 40.000 17.35 0.00 37.08 2.90
3 4 5.914635 TGCAGTTACAACTTACGTACTGTAC 59.085 40.000 7.90 7.90 37.08 2.90
4 5 6.070897 TGCAGTTACAACTTACGTACTGTA 57.929 37.500 11.32 9.15 37.08 2.74
5 6 4.935702 TGCAGTTACAACTTACGTACTGT 58.064 39.130 11.32 9.96 37.08 3.55
6 7 4.384846 CCTGCAGTTACAACTTACGTACTG 59.615 45.833 13.81 6.50 37.08 2.74
7 8 4.038402 ACCTGCAGTTACAACTTACGTACT 59.962 41.667 13.81 0.00 37.08 2.73
8 9 4.301628 ACCTGCAGTTACAACTTACGTAC 58.698 43.478 13.81 0.00 37.08 3.67
9 10 4.589216 ACCTGCAGTTACAACTTACGTA 57.411 40.909 13.81 0.00 37.08 3.57
10 11 3.464111 ACCTGCAGTTACAACTTACGT 57.536 42.857 13.81 0.00 37.08 3.57
11 12 3.367025 GCTACCTGCAGTTACAACTTACG 59.633 47.826 13.81 0.00 42.31 3.18
12 13 4.923264 GCTACCTGCAGTTACAACTTAC 57.077 45.455 13.81 0.00 42.31 2.34
25 26 3.214696 ACCATAATCCTTGCTACCTGC 57.785 47.619 0.00 0.00 43.25 4.85
26 27 4.576463 GTCAACCATAATCCTTGCTACCTG 59.424 45.833 0.00 0.00 0.00 4.00
27 28 4.385310 GGTCAACCATAATCCTTGCTACCT 60.385 45.833 0.00 0.00 35.64 3.08
28 29 3.883489 GGTCAACCATAATCCTTGCTACC 59.117 47.826 0.00 0.00 35.64 3.18
29 30 4.523083 TGGTCAACCATAATCCTTGCTAC 58.477 43.478 0.00 0.00 42.01 3.58
30 31 4.853468 TGGTCAACCATAATCCTTGCTA 57.147 40.909 0.00 0.00 42.01 3.49
31 32 3.737559 TGGTCAACCATAATCCTTGCT 57.262 42.857 0.00 0.00 42.01 3.91
43 44 1.078426 CGGTGGAGGATGGTCAACC 60.078 63.158 0.00 0.00 37.20 3.77
44 45 0.108138 CTCGGTGGAGGATGGTCAAC 60.108 60.000 0.00 0.00 36.61 3.18
45 46 1.899437 GCTCGGTGGAGGATGGTCAA 61.899 60.000 0.00 0.00 40.80 3.18
46 47 2.359169 GCTCGGTGGAGGATGGTCA 61.359 63.158 0.00 0.00 40.80 4.02
47 48 2.060980 AGCTCGGTGGAGGATGGTC 61.061 63.158 0.00 0.00 40.80 4.02
48 49 2.039624 AGCTCGGTGGAGGATGGT 59.960 61.111 0.00 0.00 40.80 3.55
49 50 2.025767 CTCAGCTCGGTGGAGGATGG 62.026 65.000 0.00 0.00 40.80 3.51
50 51 1.440893 CTCAGCTCGGTGGAGGATG 59.559 63.158 0.00 0.00 40.80 3.51
51 52 2.430610 GCTCAGCTCGGTGGAGGAT 61.431 63.158 0.00 0.00 40.80 3.24
52 53 3.071206 GCTCAGCTCGGTGGAGGA 61.071 66.667 0.00 0.00 40.80 3.71
53 54 3.073735 AGCTCAGCTCGGTGGAGG 61.074 66.667 0.00 0.00 40.80 4.30
54 55 2.493973 GAGCTCAGCTCGGTGGAG 59.506 66.667 11.89 0.00 45.85 3.86
62 63 1.686115 GGGAGAAGAGAGAGCTCAGCT 60.686 57.143 17.77 12.75 43.81 4.24
63 64 0.746659 GGGAGAAGAGAGAGCTCAGC 59.253 60.000 17.77 7.53 43.81 4.26
64 65 1.341877 TGGGGAGAAGAGAGAGCTCAG 60.342 57.143 17.77 0.00 43.81 3.35
65 66 0.707024 TGGGGAGAAGAGAGAGCTCA 59.293 55.000 17.77 0.00 43.81 4.26
183 189 0.856982 GAGGAGGAGGATGAGGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
184 190 0.178935 GGAGGAGGAGGATGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
185 191 0.859760 AGGAGGAGGAGGATGAGGAG 59.140 60.000 0.00 0.00 0.00 3.69
186 192 0.856982 GAGGAGGAGGAGGATGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
187 193 0.560193 TGAGGAGGAGGAGGATGAGG 59.440 60.000 0.00 0.00 0.00 3.86
188 194 1.703411 GTGAGGAGGAGGAGGATGAG 58.297 60.000 0.00 0.00 0.00 2.90
189 195 0.263172 GGTGAGGAGGAGGAGGATGA 59.737 60.000 0.00 0.00 0.00 2.92
190 196 0.762461 GGGTGAGGAGGAGGAGGATG 60.762 65.000 0.00 0.00 0.00 3.51
191 197 0.933791 AGGGTGAGGAGGAGGAGGAT 60.934 60.000 0.00 0.00 0.00 3.24
197 203 1.075600 GGAGGAGGGTGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
561 567 4.404098 GTGGGCACTACCGGGGTG 62.404 72.222 20.70 20.70 40.62 4.61
942 1164 2.043852 TCCTCCTCGTCCAGCTCC 60.044 66.667 0.00 0.00 0.00 4.70
1233 1530 1.524165 CGAGAGGGACGAGGACGAT 60.524 63.158 0.00 0.00 42.66 3.73
1383 1845 0.821711 ACGATTGGGTTGGTGGTGTG 60.822 55.000 0.00 0.00 0.00 3.82
1384 1846 0.821711 CACGATTGGGTTGGTGGTGT 60.822 55.000 0.00 0.00 0.00 4.16
1385 1847 1.523154 CCACGATTGGGTTGGTGGTG 61.523 60.000 1.00 0.00 43.82 4.17
1393 1855 1.432023 AAGGGGTTCCACGATTGGGT 61.432 55.000 0.00 0.00 44.11 4.51
1395 1857 1.024579 CGAAGGGGTTCCACGATTGG 61.025 60.000 0.00 0.00 45.56 3.16
1593 2093 1.181098 ACAGAACACAATGGCAGGCC 61.181 55.000 2.62 2.62 0.00 5.19
1883 2398 0.178992 CAAGGACCCTCCACAAGCAA 60.179 55.000 0.00 0.00 39.61 3.91
1893 2408 0.409484 CATTCAACCCCAAGGACCCT 59.591 55.000 0.00 0.00 36.73 4.34
1945 2460 3.579335 TCATTGACAATGCACCATGTG 57.421 42.857 21.17 0.00 38.77 3.21
2006 2524 9.294030 GAATATTATGCAACCTTTTCTCTGTTG 57.706 33.333 0.00 0.00 41.69 3.33
2007 2525 9.247861 AGAATATTATGCAACCTTTTCTCTGTT 57.752 29.630 0.00 0.00 0.00 3.16
2039 2557 4.264253 TGAGAAACAGAATATGCACCCAG 58.736 43.478 0.00 0.00 0.00 4.45
2155 2674 8.996271 CAGCATATGCATCTAACTGAAAGAATA 58.004 33.333 28.62 0.00 45.16 1.75
2204 2723 3.137176 CAGATCCCAAGCCCATAAAGAGA 59.863 47.826 0.00 0.00 0.00 3.10
2250 2769 2.616510 GCAGGTGTGCCAAGAGATTAGT 60.617 50.000 0.00 0.00 44.72 2.24
2303 2823 1.556591 GATGACGTTGTGCAGCGACA 61.557 55.000 14.78 14.36 42.23 4.35
2309 2829 1.634757 GGATGCGATGACGTTGTGCA 61.635 55.000 7.90 7.90 41.98 4.57
2310 2830 1.060937 GGATGCGATGACGTTGTGC 59.939 57.895 0.00 0.00 41.98 4.57
2315 2835 0.387367 GCGATAGGATGCGATGACGT 60.387 55.000 0.00 0.00 41.98 4.34
2317 2837 1.344458 CAGCGATAGGATGCGATGAC 58.656 55.000 0.00 0.00 45.68 3.06
2324 2844 0.242286 CCGAGTCCAGCGATAGGATG 59.758 60.000 0.00 0.00 37.52 3.51
2325 2845 0.178987 ACCGAGTCCAGCGATAGGAT 60.179 55.000 0.00 0.00 37.52 3.24
2329 2849 0.678684 TCACACCGAGTCCAGCGATA 60.679 55.000 0.00 0.00 0.00 2.92
2331 2851 1.532604 ATTCACACCGAGTCCAGCGA 61.533 55.000 0.00 0.00 0.00 4.93
2333 2853 0.247736 AGATTCACACCGAGTCCAGC 59.752 55.000 0.00 0.00 30.77 4.85
2334 2854 2.029020 TCAAGATTCACACCGAGTCCAG 60.029 50.000 0.00 0.00 30.77 3.86
2335 2855 1.967779 TCAAGATTCACACCGAGTCCA 59.032 47.619 0.00 0.00 30.77 4.02
2336 2856 2.743636 TCAAGATTCACACCGAGTCC 57.256 50.000 0.00 0.00 30.77 3.85
2337 2857 5.592054 TCATATCAAGATTCACACCGAGTC 58.408 41.667 0.00 0.00 0.00 3.36
2338 2858 5.598416 TCATATCAAGATTCACACCGAGT 57.402 39.130 0.00 0.00 0.00 4.18
2339 2859 6.218746 TCATCATATCAAGATTCACACCGAG 58.781 40.000 0.00 0.00 0.00 4.63
2340 2860 6.160576 TCATCATATCAAGATTCACACCGA 57.839 37.500 0.00 0.00 0.00 4.69
2341 2861 8.601476 CATATCATCATATCAAGATTCACACCG 58.399 37.037 0.00 0.00 0.00 4.94
2342 2862 9.445878 ACATATCATCATATCAAGATTCACACC 57.554 33.333 0.00 0.00 0.00 4.16
2350 2870 9.662947 GTCCATCAACATATCATCATATCAAGA 57.337 33.333 0.00 0.00 0.00 3.02
2367 2887 4.398988 TGATAATGCACCAAGTCCATCAAC 59.601 41.667 0.00 0.00 0.00 3.18
2371 3016 5.163385 CCATTTGATAATGCACCAAGTCCAT 60.163 40.000 0.00 0.00 39.87 3.41
2374 3019 5.581126 TCCATTTGATAATGCACCAAGTC 57.419 39.130 0.00 0.00 39.87 3.01
2377 3022 5.046448 AGCTTTCCATTTGATAATGCACCAA 60.046 36.000 0.00 0.00 39.87 3.67
2389 3034 5.957798 TCTAAGAATGCAGCTTTCCATTTG 58.042 37.500 15.65 7.46 32.20 2.32
2392 3037 5.948162 TCTTTCTAAGAATGCAGCTTTCCAT 59.052 36.000 15.65 9.08 33.83 3.41
2394 3039 5.886960 TCTTTCTAAGAATGCAGCTTTCC 57.113 39.130 15.65 1.09 33.83 3.13
2409 3054 8.500290 ACTGAAAGAATGCCATGCATCTTTCTA 61.500 37.037 28.77 21.67 46.93 2.10
2410 3055 7.754100 ACTGAAAGAATGCCATGCATCTTTCT 61.754 38.462 28.77 18.64 46.93 2.52
2411 3056 5.623824 ACTGAAAGAATGCCATGCATCTTTC 60.624 40.000 26.03 26.03 46.95 2.62
2412 3057 4.222145 ACTGAAAGAATGCCATGCATCTTT 59.778 37.500 17.96 17.96 43.17 2.52
2413 3058 3.767673 ACTGAAAGAATGCCATGCATCTT 59.232 39.130 0.00 0.00 43.17 2.40
2414 3059 3.362706 ACTGAAAGAATGCCATGCATCT 58.637 40.909 0.00 0.00 43.17 2.90
2415 3060 3.795623 ACTGAAAGAATGCCATGCATC 57.204 42.857 0.00 0.00 43.17 3.91
2416 3061 3.512329 TGAACTGAAAGAATGCCATGCAT 59.488 39.130 0.00 0.00 45.01 3.96
2417 3062 2.892215 TGAACTGAAAGAATGCCATGCA 59.108 40.909 0.00 0.00 39.72 3.96
2418 3063 3.581024 TGAACTGAAAGAATGCCATGC 57.419 42.857 0.00 0.00 37.43 4.06
2419 3064 4.328983 GCATTGAACTGAAAGAATGCCATG 59.671 41.667 0.00 0.00 42.52 3.66
2420 3065 4.020928 TGCATTGAACTGAAAGAATGCCAT 60.021 37.500 11.81 0.00 45.68 4.40
2421 3066 3.321396 TGCATTGAACTGAAAGAATGCCA 59.679 39.130 11.81 0.15 45.68 4.92
2422 3067 3.916761 TGCATTGAACTGAAAGAATGCC 58.083 40.909 11.81 0.00 45.68 4.40
2426 3071 6.327154 CAGCATATGCATTGAACTGAAAGAA 58.673 36.000 28.62 0.00 45.16 2.52
2447 3099 6.305693 TCTCTTTTTACTTCTGAAAGCAGC 57.694 37.500 0.00 0.00 42.01 5.25
2476 3128 9.976511 TCGGAATAACATAAGATCTCGTAAAAT 57.023 29.630 0.00 0.00 0.00 1.82
2480 3132 7.013559 TGGTTCGGAATAACATAAGATCTCGTA 59.986 37.037 0.00 0.00 0.00 3.43
2481 3133 6.183360 TGGTTCGGAATAACATAAGATCTCGT 60.183 38.462 0.00 0.00 0.00 4.18
2482 3134 6.213677 TGGTTCGGAATAACATAAGATCTCG 58.786 40.000 0.00 0.00 0.00 4.04
2484 3136 6.766467 GGTTGGTTCGGAATAACATAAGATCT 59.234 38.462 17.03 0.00 0.00 2.75
2489 3147 6.317642 CAGATGGTTGGTTCGGAATAACATAA 59.682 38.462 17.03 7.39 0.00 1.90
2490 3148 5.820423 CAGATGGTTGGTTCGGAATAACATA 59.180 40.000 17.03 9.54 0.00 2.29
2493 3151 4.007659 ACAGATGGTTGGTTCGGAATAAC 58.992 43.478 10.53 10.53 0.00 1.89
2500 3158 3.338249 AGATTCACAGATGGTTGGTTCG 58.662 45.455 0.00 0.00 0.00 3.95
2506 3164 3.285484 GCCATGAGATTCACAGATGGTT 58.715 45.455 0.00 0.00 0.00 3.67
2507 3165 2.240414 TGCCATGAGATTCACAGATGGT 59.760 45.455 0.00 0.00 0.00 3.55
2508 3166 2.927028 TGCCATGAGATTCACAGATGG 58.073 47.619 0.00 0.00 0.00 3.51
2509 3167 3.304726 GCATGCCATGAGATTCACAGATG 60.305 47.826 9.33 0.00 0.00 2.90
2510 3168 2.885266 GCATGCCATGAGATTCACAGAT 59.115 45.455 9.33 0.00 0.00 2.90
2511 3169 2.294979 GCATGCCATGAGATTCACAGA 58.705 47.619 9.33 0.00 0.00 3.41
2512 3170 2.021457 TGCATGCCATGAGATTCACAG 58.979 47.619 16.68 0.00 0.00 3.66
2513 3171 2.131776 TGCATGCCATGAGATTCACA 57.868 45.000 16.68 0.00 0.00 3.58
2529 3187 1.096967 CCTGCTATCAACGGCATGCA 61.097 55.000 21.36 0.00 37.83 3.96
2530 3188 1.650912 CCTGCTATCAACGGCATGC 59.349 57.895 9.90 9.90 37.83 4.06
2531 3189 0.464373 ACCCTGCTATCAACGGCATG 60.464 55.000 0.00 0.00 37.83 4.06
2567 3225 2.331019 GTTGTGTGGCGACAACCCAC 62.331 60.000 17.25 0.00 46.74 4.61
2568 3226 2.115911 GTTGTGTGGCGACAACCCA 61.116 57.895 17.25 0.00 46.74 4.51
2569 3227 2.719354 GTTGTGTGGCGACAACCC 59.281 61.111 17.25 0.00 46.74 4.11
2572 3230 0.741574 ACGAAGTTGTGTGGCGACAA 60.742 50.000 2.03 0.00 40.28 3.18
2573 3231 1.153529 ACGAAGTTGTGTGGCGACA 60.154 52.632 0.00 0.00 37.78 4.35
2574 3232 3.713963 ACGAAGTTGTGTGGCGAC 58.286 55.556 0.00 0.00 37.78 5.19
2585 3243 2.161808 CAGTGATAGGACACGACGAAGT 59.838 50.000 0.00 0.00 44.35 3.01
2648 3306 7.385778 TCAACTTAAAATTATGAACGGAGGG 57.614 36.000 0.00 0.00 0.00 4.30
2653 3311 8.894409 TCAGCATCAACTTAAAATTATGAACG 57.106 30.769 0.00 0.00 0.00 3.95
2656 3314 8.689061 AGCATCAGCATCAACTTAAAATTATGA 58.311 29.630 0.00 0.00 45.49 2.15
2658 3316 8.689061 TCAGCATCAGCATCAACTTAAAATTAT 58.311 29.630 0.00 0.00 45.49 1.28
2659 3317 8.054152 TCAGCATCAGCATCAACTTAAAATTA 57.946 30.769 0.00 0.00 45.49 1.40
2660 3318 6.927416 TCAGCATCAGCATCAACTTAAAATT 58.073 32.000 0.00 0.00 45.49 1.82
2663 3321 5.677852 GCATCAGCATCAGCATCAACTTAAA 60.678 40.000 0.00 0.00 45.49 1.52
2665 3323 3.314357 GCATCAGCATCAGCATCAACTTA 59.686 43.478 0.00 0.00 45.49 2.24
2666 3324 2.099263 GCATCAGCATCAGCATCAACTT 59.901 45.455 0.00 0.00 45.49 2.66
2669 3327 2.052782 AGCATCAGCATCAGCATCAA 57.947 45.000 0.00 0.00 45.49 2.57
2671 3329 2.357952 TGAAAGCATCAGCATCAGCATC 59.642 45.455 0.00 0.00 45.49 3.91
2672 3330 2.375146 TGAAAGCATCAGCATCAGCAT 58.625 42.857 0.00 0.00 45.49 3.79
2673 3331 1.828979 TGAAAGCATCAGCATCAGCA 58.171 45.000 0.00 0.00 45.49 4.41
2674 3332 2.099263 ACATGAAAGCATCAGCATCAGC 59.901 45.455 0.00 0.00 42.53 4.26
2676 3334 3.759618 TCAACATGAAAGCATCAGCATCA 59.240 39.130 0.00 0.00 42.53 3.07
2678 3336 3.508402 TGTCAACATGAAAGCATCAGCAT 59.492 39.130 0.00 0.00 42.53 3.79
2773 3648 5.098211 GCAGATGCTTTGGTTCAGATTAAC 58.902 41.667 0.00 0.00 38.21 2.01
2866 3748 0.521291 ACGGATGAATTTGTGTGGCG 59.479 50.000 0.00 0.00 0.00 5.69
2938 3820 4.302455 CAGGGATCGTCACATCAAGTATC 58.698 47.826 0.00 0.00 0.00 2.24
2988 3870 5.063944 AGTGCGACATCATGTCTCATAAAAC 59.936 40.000 13.48 0.97 42.98 2.43
3054 3960 3.050619 CCAGTACTATTAAGGCTTCGCG 58.949 50.000 1.30 0.00 0.00 5.87
3065 3971 9.036980 ACACTAGAAAGATTGTCCAGTACTATT 57.963 33.333 0.00 0.00 0.00 1.73
3158 4078 7.669722 ACAGAGCTCCTTTAATGGAATGTTTAA 59.330 33.333 10.93 0.00 35.43 1.52
3172 4092 7.651027 AATGCAAAATATACAGAGCTCCTTT 57.349 32.000 10.93 0.00 0.00 3.11
3250 4171 9.804758 AGAGTTACTAACAAGAATGTAGCATAC 57.195 33.333 1.79 0.00 39.40 2.39
3390 4311 1.077429 GGCAGGTGGGTCATCCTTC 60.077 63.158 0.00 0.00 36.20 3.46
3557 4478 7.337942 ACATTTTGGACAGAATTATCAGGTCTC 59.662 37.037 0.00 0.00 34.44 3.36
3592 4524 6.543831 GGAGCAAATATATGTAGCCAATAGGG 59.456 42.308 0.00 0.00 40.85 3.53
3593 4525 7.112122 TGGAGCAAATATATGTAGCCAATAGG 58.888 38.462 0.00 0.00 38.23 2.57
3596 4528 6.782986 TCTGGAGCAAATATATGTAGCCAAT 58.217 36.000 0.00 0.00 0.00 3.16
3597 4529 6.186420 TCTGGAGCAAATATATGTAGCCAA 57.814 37.500 0.00 0.00 0.00 4.52
3616 4575 5.083533 AGATTCTACACTTGAAGCTCTGG 57.916 43.478 0.00 0.00 35.59 3.86
3643 4603 1.962100 GGGAACGGAGGGAGTATACAG 59.038 57.143 5.50 0.00 0.00 2.74
3646 4606 2.852714 TTGGGAACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
3649 4609 1.558294 GTATTTGGGAACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
3650 4610 1.838077 AGTATTTGGGAACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
3653 4613 3.007635 GACAAGTATTTGGGAACGGAGG 58.992 50.000 2.81 0.00 38.66 4.30
3654 4614 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
3655 4615 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
3656 4616 4.760204 AGAAAGACAAGTATTTGGGAACGG 59.240 41.667 2.81 0.00 38.66 4.44
3657 4617 5.941948 AGAAAGACAAGTATTTGGGAACG 57.058 39.130 2.81 0.00 38.66 3.95
3658 4618 6.127980 GCCTAGAAAGACAAGTATTTGGGAAC 60.128 42.308 2.81 0.00 38.66 3.62
3659 4619 5.944007 GCCTAGAAAGACAAGTATTTGGGAA 59.056 40.000 2.81 0.00 38.66 3.97
3660 4620 5.013704 TGCCTAGAAAGACAAGTATTTGGGA 59.986 40.000 2.81 0.00 38.66 4.37
3661 4621 5.253330 TGCCTAGAAAGACAAGTATTTGGG 58.747 41.667 2.81 0.00 38.66 4.12
3662 4622 7.396540 AATGCCTAGAAAGACAAGTATTTGG 57.603 36.000 2.81 0.00 38.66 3.28
3663 4623 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
3664 4624 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3665 4625 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
3666 4626 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
3667 4627 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
3668 4628 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
3669 4629 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
3670 4630 6.295236 CCCATTTGAAATGCCTAGAAAGACAA 60.295 38.462 12.26 0.00 0.00 3.18
3671 4631 5.185635 CCCATTTGAAATGCCTAGAAAGACA 59.814 40.000 12.26 0.00 0.00 3.41
3672 4632 5.654497 CCCATTTGAAATGCCTAGAAAGAC 58.346 41.667 12.26 0.00 0.00 3.01
3673 4633 4.160252 GCCCATTTGAAATGCCTAGAAAGA 59.840 41.667 12.26 0.00 0.00 2.52
3674 4634 4.161001 AGCCCATTTGAAATGCCTAGAAAG 59.839 41.667 12.26 0.00 0.00 2.62
3675 4635 4.095946 AGCCCATTTGAAATGCCTAGAAA 58.904 39.130 12.26 0.00 0.00 2.52
3676 4636 3.701040 GAGCCCATTTGAAATGCCTAGAA 59.299 43.478 12.26 0.00 0.00 2.10
3677 4637 3.290710 GAGCCCATTTGAAATGCCTAGA 58.709 45.455 12.26 0.00 0.00 2.43
3678 4638 3.025978 TGAGCCCATTTGAAATGCCTAG 58.974 45.455 12.26 2.44 0.00 3.02
3679 4639 3.098774 TGAGCCCATTTGAAATGCCTA 57.901 42.857 12.26 0.00 0.00 3.93
3680 4640 1.941377 TGAGCCCATTTGAAATGCCT 58.059 45.000 12.26 10.08 0.00 4.75
3681 4641 2.289569 TGTTGAGCCCATTTGAAATGCC 60.290 45.455 12.26 5.68 0.00 4.40
3682 4642 3.042871 TGTTGAGCCCATTTGAAATGC 57.957 42.857 12.26 2.38 0.00 3.56
3683 4643 3.372822 GCATGTTGAGCCCATTTGAAATG 59.627 43.478 10.84 10.84 0.00 2.32
3684 4644 3.602483 GCATGTTGAGCCCATTTGAAAT 58.398 40.909 0.00 0.00 0.00 2.17
3685 4645 2.609984 CGCATGTTGAGCCCATTTGAAA 60.610 45.455 0.00 0.00 0.00 2.69
3686 4646 1.067706 CGCATGTTGAGCCCATTTGAA 60.068 47.619 0.00 0.00 0.00 2.69
3687 4647 0.527113 CGCATGTTGAGCCCATTTGA 59.473 50.000 0.00 0.00 0.00 2.69
3688 4648 0.458889 CCGCATGTTGAGCCCATTTG 60.459 55.000 0.00 0.00 0.00 2.32
3689 4649 0.611618 TCCGCATGTTGAGCCCATTT 60.612 50.000 0.00 0.00 0.00 2.32
3690 4650 0.396139 ATCCGCATGTTGAGCCCATT 60.396 50.000 0.00 0.00 0.00 3.16
3691 4651 1.105167 CATCCGCATGTTGAGCCCAT 61.105 55.000 0.00 0.00 0.00 4.00
3692 4652 1.750018 CATCCGCATGTTGAGCCCA 60.750 57.895 0.00 0.00 0.00 5.36
3693 4653 0.463654 TACATCCGCATGTTGAGCCC 60.464 55.000 0.00 0.00 40.66 5.19
3694 4654 1.265095 CATACATCCGCATGTTGAGCC 59.735 52.381 0.00 0.00 40.66 4.70
3695 4655 1.942657 ACATACATCCGCATGTTGAGC 59.057 47.619 0.00 0.00 40.66 4.26
3696 4656 4.445718 GTCTACATACATCCGCATGTTGAG 59.554 45.833 0.00 0.00 40.66 3.02
3697 4657 4.142049 TGTCTACATACATCCGCATGTTGA 60.142 41.667 0.00 0.00 40.66 3.18
3698 4658 4.119136 TGTCTACATACATCCGCATGTTG 58.881 43.478 0.00 0.00 40.66 3.33
3699 4659 4.400529 TGTCTACATACATCCGCATGTT 57.599 40.909 0.00 0.00 40.66 2.71
3700 4660 4.607293 ATGTCTACATACATCCGCATGT 57.393 40.909 0.00 0.00 45.73 3.21
3701 4661 7.601073 AAATATGTCTACATACATCCGCATG 57.399 36.000 4.98 0.00 41.15 4.06
3702 4662 9.719355 TTAAAATATGTCTACATACATCCGCAT 57.281 29.630 4.98 0.00 41.15 4.73
3703 4663 9.549078 TTTAAAATATGTCTACATACATCCGCA 57.451 29.630 4.98 0.00 41.15 5.69
3730 4690 5.393962 GGTGCAAAATGAGTGAATCTACAC 58.606 41.667 0.00 0.00 40.60 2.90
3731 4691 4.154015 CGGTGCAAAATGAGTGAATCTACA 59.846 41.667 0.00 0.00 0.00 2.74
3732 4692 4.154195 ACGGTGCAAAATGAGTGAATCTAC 59.846 41.667 0.00 0.00 0.00 2.59
3733 4693 4.323417 ACGGTGCAAAATGAGTGAATCTA 58.677 39.130 0.00 0.00 0.00 1.98
3734 4694 3.149196 ACGGTGCAAAATGAGTGAATCT 58.851 40.909 0.00 0.00 0.00 2.40
3735 4695 3.559238 ACGGTGCAAAATGAGTGAATC 57.441 42.857 0.00 0.00 0.00 2.52
3736 4696 4.458989 ACATACGGTGCAAAATGAGTGAAT 59.541 37.500 0.00 0.00 0.00 2.57
3737 4697 3.818210 ACATACGGTGCAAAATGAGTGAA 59.182 39.130 0.00 0.00 0.00 3.18
3738 4698 3.407698 ACATACGGTGCAAAATGAGTGA 58.592 40.909 0.00 0.00 0.00 3.41
3739 4699 3.829886 ACATACGGTGCAAAATGAGTG 57.170 42.857 0.00 0.00 0.00 3.51
3740 4700 4.575885 ACTACATACGGTGCAAAATGAGT 58.424 39.130 0.00 0.00 0.00 3.41
3741 4701 4.629634 TGACTACATACGGTGCAAAATGAG 59.370 41.667 0.00 0.00 0.00 2.90
3742 4702 4.390603 GTGACTACATACGGTGCAAAATGA 59.609 41.667 0.00 0.00 0.00 2.57
3743 4703 4.391830 AGTGACTACATACGGTGCAAAATG 59.608 41.667 0.00 0.00 0.00 2.32
3744 4704 4.575885 AGTGACTACATACGGTGCAAAAT 58.424 39.130 0.00 0.00 0.00 1.82
3745 4705 3.997762 AGTGACTACATACGGTGCAAAA 58.002 40.909 0.00 0.00 0.00 2.44
3746 4706 3.671008 AGTGACTACATACGGTGCAAA 57.329 42.857 0.00 0.00 0.00 3.68
3747 4707 3.243941 ACAAGTGACTACATACGGTGCAA 60.244 43.478 0.00 0.00 0.00 4.08
3748 4708 2.297880 ACAAGTGACTACATACGGTGCA 59.702 45.455 0.00 0.00 0.00 4.57
3749 4709 2.955614 ACAAGTGACTACATACGGTGC 58.044 47.619 0.00 0.00 0.00 5.01
3750 4710 4.552355 TCAACAAGTGACTACATACGGTG 58.448 43.478 0.00 0.00 0.00 4.94
3751 4711 4.859304 TCAACAAGTGACTACATACGGT 57.141 40.909 0.00 0.00 0.00 4.83
3752 4712 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3753 4713 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3754 4714 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3756 4716 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3757 4717 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3758 4718 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3759 4719 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3760 4720 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3761 4721 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3762 4722 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3763 4723 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3764 4724 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3765 4725 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
3766 4726 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
3776 4736 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
3777 4737 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
3778 4738 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3779 4739 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3780 4740 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3781 4741 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3782 4742 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3783 4743 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3784 4744 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3785 4745 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3786 4746 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3787 4747 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3788 4748 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3789 4749 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3790 4750 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
3791 4751 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3792 4752 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3793 4753 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3794 4754 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
3795 4755 3.967467 AATCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
3796 4756 2.850695 AATCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
3797 4757 3.532542 CAAAATCTACTCCCTCCGTTCC 58.467 50.000 0.00 0.00 0.00 3.62
3798 4758 3.055312 ACCAAAATCTACTCCCTCCGTTC 60.055 47.826 0.00 0.00 0.00 3.95
3799 4759 2.910977 ACCAAAATCTACTCCCTCCGTT 59.089 45.455 0.00 0.00 0.00 4.44
3800 4760 2.236395 CACCAAAATCTACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
3801 4761 2.906354 CACCAAAATCTACTCCCTCCG 58.094 52.381 0.00 0.00 0.00 4.63
3802 4762 2.026262 TGCACCAAAATCTACTCCCTCC 60.026 50.000 0.00 0.00 0.00 4.30
3803 4763 3.350219 TGCACCAAAATCTACTCCCTC 57.650 47.619 0.00 0.00 0.00 4.30
3804 4764 3.624777 CATGCACCAAAATCTACTCCCT 58.375 45.455 0.00 0.00 0.00 4.20
3805 4765 2.099756 GCATGCACCAAAATCTACTCCC 59.900 50.000 14.21 0.00 0.00 4.30
3806 4766 3.019564 AGCATGCACCAAAATCTACTCC 58.980 45.455 21.98 0.00 0.00 3.85
3807 4767 4.878397 ACTAGCATGCACCAAAATCTACTC 59.122 41.667 21.98 0.00 0.00 2.59
3808 4768 4.848357 ACTAGCATGCACCAAAATCTACT 58.152 39.130 21.98 0.00 0.00 2.57
3809 4769 5.567138 AACTAGCATGCACCAAAATCTAC 57.433 39.130 21.98 0.00 0.00 2.59
3810 4770 6.538742 GTCTAACTAGCATGCACCAAAATCTA 59.461 38.462 21.98 0.00 0.00 1.98
3811 4771 5.355350 GTCTAACTAGCATGCACCAAAATCT 59.645 40.000 21.98 0.00 0.00 2.40
3812 4772 5.355350 AGTCTAACTAGCATGCACCAAAATC 59.645 40.000 21.98 4.69 0.00 2.17
3813 4773 5.256474 AGTCTAACTAGCATGCACCAAAAT 58.744 37.500 21.98 0.00 0.00 1.82
3814 4774 4.651778 AGTCTAACTAGCATGCACCAAAA 58.348 39.130 21.98 0.00 0.00 2.44
3815 4775 4.286297 AGTCTAACTAGCATGCACCAAA 57.714 40.909 21.98 0.93 0.00 3.28
3816 4776 3.981071 AGTCTAACTAGCATGCACCAA 57.019 42.857 21.98 0.93 0.00 3.67
3817 4777 3.007940 ACAAGTCTAACTAGCATGCACCA 59.992 43.478 21.98 3.30 0.00 4.17
3818 4778 3.372206 CACAAGTCTAACTAGCATGCACC 59.628 47.826 21.98 0.00 0.00 5.01
3819 4779 3.181516 GCACAAGTCTAACTAGCATGCAC 60.182 47.826 21.98 7.24 0.00 4.57
3820 4780 3.002791 GCACAAGTCTAACTAGCATGCA 58.997 45.455 21.98 5.01 0.00 3.96
3821 4781 3.002791 TGCACAAGTCTAACTAGCATGC 58.997 45.455 10.51 10.51 29.70 4.06
3822 4782 5.611796 TTTGCACAAGTCTAACTAGCATG 57.388 39.130 0.00 0.00 33.06 4.06
3823 4783 6.824305 AATTTGCACAAGTCTAACTAGCAT 57.176 33.333 0.00 0.00 33.06 3.79
3824 4784 7.390440 ACATAATTTGCACAAGTCTAACTAGCA 59.610 33.333 0.00 0.00 31.76 3.49
3865 4825 2.760092 AGCAGGAGAACAGCAACAAAAA 59.240 40.909 0.00 0.00 0.00 1.94
3880 4840 6.840527 TCAATGGATCATAATAACAGCAGGA 58.159 36.000 0.00 0.00 0.00 3.86
3882 4842 8.162878 ACTTCAATGGATCATAATAACAGCAG 57.837 34.615 0.00 0.00 0.00 4.24
3884 4844 8.844244 AGAACTTCAATGGATCATAATAACAGC 58.156 33.333 0.00 0.00 0.00 4.40
3967 4945 2.574018 GCCCCAAGAACCTTGTGGC 61.574 63.158 15.28 15.28 35.91 5.01
3998 4976 1.018910 TGATGCTCATCATGTTGCCG 58.981 50.000 8.37 0.00 42.42 5.69
4274 5252 4.178255 GTCATGTCGACGCACGCG 62.178 66.667 11.62 10.36 46.03 6.01
4545 5523 0.773644 ACACCAGCAAAGACCCTGAT 59.226 50.000 0.00 0.00 0.00 2.90
4559 5537 2.522436 ACGAACTCCCGGACACCA 60.522 61.111 0.73 0.00 0.00 4.17
4683 5673 6.306987 ACAATTTCCAGACAGAACCATTACT 58.693 36.000 0.00 0.00 0.00 2.24
4686 5676 7.451255 TCATAACAATTTCCAGACAGAACCATT 59.549 33.333 0.00 0.00 0.00 3.16
4823 5820 9.647797 CCAGTGTTCTTTATACAACATACTACA 57.352 33.333 0.00 0.00 35.05 2.74
4850 5850 5.008415 CCTGACATGCTGATGGATAAACTTC 59.992 44.000 0.00 0.00 33.39 3.01
4888 5889 9.994432 CCATAGTCATTTTCAGTTTCATTCTAC 57.006 33.333 0.00 0.00 0.00 2.59
4889 5890 8.677300 GCCATAGTCATTTTCAGTTTCATTCTA 58.323 33.333 0.00 0.00 0.00 2.10
4890 5891 7.395489 AGCCATAGTCATTTTCAGTTTCATTCT 59.605 33.333 0.00 0.00 0.00 2.40
4896 5897 6.604795 AGCATAGCCATAGTCATTTTCAGTTT 59.395 34.615 0.00 0.00 0.00 2.66
4901 5902 5.297776 ACACAGCATAGCCATAGTCATTTTC 59.702 40.000 0.00 0.00 0.00 2.29
4929 5930 0.250338 AGAGGAAAACAGACGGTGGC 60.250 55.000 0.00 0.00 0.00 5.01
4934 5935 6.022163 TCTTACCTAAGAGGAAAACAGACG 57.978 41.667 0.00 0.00 37.67 4.18
4944 5945 5.041191 ACAATGCCATCTTACCTAAGAGG 57.959 43.478 1.47 1.03 44.67 3.69
4959 5961 4.009675 TCCATGTCTAACTGAACAATGCC 58.990 43.478 0.00 0.00 0.00 4.40
4974 5976 5.841957 ATGAAAGGTAGCAATTCCATGTC 57.158 39.130 7.68 0.00 0.00 3.06
4985 5987 7.105241 AGATGGATGAAAAATGAAAGGTAGC 57.895 36.000 0.00 0.00 0.00 3.58
4994 5996 5.383476 AGGAGGCTAGATGGATGAAAAATG 58.617 41.667 0.00 0.00 0.00 2.32
4995 5997 5.372066 AGAGGAGGCTAGATGGATGAAAAAT 59.628 40.000 0.00 0.00 0.00 1.82
5008 6010 2.733956 ACACAAGAGAGAGGAGGCTAG 58.266 52.381 0.00 0.00 0.00 3.42
5013 6015 4.054671 GACAACAACACAAGAGAGAGGAG 58.945 47.826 0.00 0.00 0.00 3.69
5038 6040 0.030092 TGGTGGAAGATAGGAGGGGG 60.030 60.000 0.00 0.00 0.00 5.40
5039 6041 1.981495 GATGGTGGAAGATAGGAGGGG 59.019 57.143 0.00 0.00 0.00 4.79
5040 6042 1.620819 CGATGGTGGAAGATAGGAGGG 59.379 57.143 0.00 0.00 0.00 4.30
5041 6043 2.320781 ACGATGGTGGAAGATAGGAGG 58.679 52.381 0.00 0.00 0.00 4.30
5042 6044 3.639094 AGAACGATGGTGGAAGATAGGAG 59.361 47.826 0.00 0.00 0.00 3.69
5043 6045 3.643237 AGAACGATGGTGGAAGATAGGA 58.357 45.455 0.00 0.00 0.00 2.94
5044 6046 4.372656 GAAGAACGATGGTGGAAGATAGG 58.627 47.826 0.00 0.00 0.00 2.57
5045 6047 4.100189 AGGAAGAACGATGGTGGAAGATAG 59.900 45.833 0.00 0.00 0.00 2.08
5046 6048 4.030913 AGGAAGAACGATGGTGGAAGATA 58.969 43.478 0.00 0.00 0.00 1.98
5047 6049 2.840651 AGGAAGAACGATGGTGGAAGAT 59.159 45.455 0.00 0.00 0.00 2.40
5048 6050 2.233922 GAGGAAGAACGATGGTGGAAGA 59.766 50.000 0.00 0.00 0.00 2.87
5049 6051 2.622436 GAGGAAGAACGATGGTGGAAG 58.378 52.381 0.00 0.00 0.00 3.46
5050 6052 1.278127 GGAGGAAGAACGATGGTGGAA 59.722 52.381 0.00 0.00 0.00 3.53
5051 6053 0.902531 GGAGGAAGAACGATGGTGGA 59.097 55.000 0.00 0.00 0.00 4.02
5052 6054 0.460284 CGGAGGAAGAACGATGGTGG 60.460 60.000 0.00 0.00 0.00 4.61
5053 6055 0.530744 TCGGAGGAAGAACGATGGTG 59.469 55.000 0.00 0.00 0.00 4.17
5054 6056 0.818296 CTCGGAGGAAGAACGATGGT 59.182 55.000 0.00 0.00 35.93 3.55
5055 6057 1.103803 TCTCGGAGGAAGAACGATGG 58.896 55.000 4.96 0.00 35.93 3.51
5056 6058 3.444703 AATCTCGGAGGAAGAACGATG 57.555 47.619 4.96 0.00 35.93 3.84
5057 6059 4.473477 AAAATCTCGGAGGAAGAACGAT 57.527 40.909 4.96 0.00 35.93 3.73
5058 6060 3.955650 AAAATCTCGGAGGAAGAACGA 57.044 42.857 4.96 0.00 35.14 3.85
5087 6089 9.981460 AACCTTTGATGGACTTCTTTTCTATAT 57.019 29.630 0.00 0.00 0.00 0.86
5088 6090 9.231297 CAACCTTTGATGGACTTCTTTTCTATA 57.769 33.333 0.00 0.00 0.00 1.31
5089 6091 7.944554 TCAACCTTTGATGGACTTCTTTTCTAT 59.055 33.333 0.00 0.00 34.08 1.98
5090 6092 7.228706 GTCAACCTTTGATGGACTTCTTTTCTA 59.771 37.037 0.00 0.00 42.47 2.10
5091 6093 6.039829 GTCAACCTTTGATGGACTTCTTTTCT 59.960 38.462 0.00 0.00 42.47 2.52
5092 6094 6.183360 TGTCAACCTTTGATGGACTTCTTTTC 60.183 38.462 0.00 0.00 42.47 2.29
5093 6095 5.656416 TGTCAACCTTTGATGGACTTCTTTT 59.344 36.000 0.00 0.00 42.47 2.27
5111 6113 5.059833 ACTCCTTCTTCATGTCTTGTCAAC 58.940 41.667 0.00 0.00 0.00 3.18
5113 6115 4.963318 ACTCCTTCTTCATGTCTTGTCA 57.037 40.909 0.00 0.00 0.00 3.58
5114 6116 5.178438 GTGAACTCCTTCTTCATGTCTTGTC 59.822 44.000 0.00 0.00 30.46 3.18
5115 6117 5.059833 GTGAACTCCTTCTTCATGTCTTGT 58.940 41.667 0.00 0.00 30.46 3.16
5116 6118 4.453819 GGTGAACTCCTTCTTCATGTCTTG 59.546 45.833 0.00 0.00 30.46 3.02
5118 6120 3.306364 CGGTGAACTCCTTCTTCATGTCT 60.306 47.826 0.00 0.00 30.46 3.41
5119 6121 2.996621 CGGTGAACTCCTTCTTCATGTC 59.003 50.000 0.00 0.00 30.46 3.06
5173 6175 5.675575 GCCTAAGAGCATGACATTGTTCTTG 60.676 44.000 18.32 12.13 43.97 3.02
5181 6183 1.489649 AGCAGCCTAAGAGCATGACAT 59.510 47.619 0.00 0.00 34.23 3.06
5192 6194 1.208052 CACCTCTAAGCAGCAGCCTAA 59.792 52.381 0.00 0.00 43.56 2.69
5254 6256 3.808726 GCTTGAAGAGAGCATCATACAGG 59.191 47.826 0.00 0.00 39.89 4.00
5297 6305 1.006832 GCAATCCGCAATCGTGTACT 58.993 50.000 0.00 0.00 41.79 2.73
5389 6397 1.066858 TCGAGAAGGATGTTGGCAGAC 60.067 52.381 0.00 0.00 0.00 3.51
5459 6467 3.688673 GTCATCTCAGCTTTTCCTCTTGG 59.311 47.826 0.00 0.00 0.00 3.61
5564 6572 1.801913 CGAGGACAACTCCGAAGCG 60.802 63.158 0.00 0.00 43.57 4.68
5582 6590 3.493524 GGCCTCCTTGTGATAAGCTCTAC 60.494 52.174 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.