Multiple sequence alignment - TraesCS1B01G059000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G059000 chr1B 100.000 4315 0 0 1 4315 41645205 41640891 0.000000e+00 7969
1 TraesCS1B01G059000 chr1B 87.368 570 46 21 6 556 443825796 443826358 7.870000e-177 630
2 TraesCS1B01G059000 chr1B 97.248 327 8 1 6 331 673278642 673278968 1.750000e-153 553
3 TraesCS1B01G059000 chr1B 80.495 728 130 9 2352 3073 622180783 622180062 8.160000e-152 547
4 TraesCS1B01G059000 chr1B 97.561 246 6 0 328 573 660082090 660082335 5.160000e-114 422
5 TraesCS1B01G059000 chr1B 83.090 343 38 9 3988 4315 41449978 41449641 1.170000e-75 294
6 TraesCS1B01G059000 chr1B 90.551 127 9 3 3699 3823 41450579 41450454 9.600000e-37 165
7 TraesCS1B01G059000 chr1A 89.690 1804 138 22 1817 3601 27259170 27260944 0.000000e+00 2257
8 TraesCS1B01G059000 chr1A 83.475 823 62 39 729 1520 27258171 27258950 0.000000e+00 699
9 TraesCS1B01G059000 chr1A 79.863 730 129 11 2350 3073 547275895 547276612 6.400000e-143 518
10 TraesCS1B01G059000 chr1A 81.648 267 13 19 3607 3842 27208961 27208700 5.700000e-44 189
11 TraesCS1B01G059000 chr1D 91.838 1507 95 13 2225 3714 25956583 25955088 0.000000e+00 2076
12 TraesCS1B01G059000 chr1D 87.601 621 26 20 596 1199 25958051 25957465 0.000000e+00 673
13 TraesCS1B01G059000 chr1D 81.344 729 129 6 2350 3073 452346888 452347614 1.730000e-163 586
14 TraesCS1B01G059000 chr1D 97.590 249 6 0 328 576 52666729 52666977 1.110000e-115 427
15 TraesCS1B01G059000 chr1D 80.857 350 35 16 3974 4315 25954468 25954143 3.330000e-61 246
16 TraesCS1B01G059000 chr1D 90.426 188 16 2 1008 1194 452346690 452346876 3.330000e-61 246
17 TraesCS1B01G059000 chr7D 86.235 1206 131 21 2321 3508 626051594 626050406 0.000000e+00 1275
18 TraesCS1B01G059000 chr7D 86.594 552 69 3 2315 2862 626030921 626030371 4.770000e-169 604
19 TraesCS1B01G059000 chr7D 91.286 241 13 4 967 1199 626052608 626052368 5.380000e-84 322
20 TraesCS1B01G059000 chr7D 90.547 201 19 0 999 1199 626031741 626031541 2.560000e-67 267
21 TraesCS1B01G059000 chr7D 87.204 211 22 4 2871 3078 626028167 626027959 7.210000e-58 235
22 TraesCS1B01G059000 chr7B 84.698 1307 147 29 2315 3600 725854042 725855316 0.000000e+00 1256
23 TraesCS1B01G059000 chr7B 97.248 327 8 1 6 331 72412906 72413232 1.750000e-153 553
24 TraesCS1B01G059000 chr7B 93.796 274 17 0 294 567 686831888 686832161 3.110000e-111 412
25 TraesCS1B01G059000 chr7B 91.497 294 11 4 913 1206 232271803 232271524 4.050000e-105 392
26 TraesCS1B01G059000 chr7B 92.116 241 11 4 967 1199 725853060 725853300 2.490000e-87 333
27 TraesCS1B01G059000 chr7A 86.784 1082 114 22 2321 3381 721586720 721585647 0.000000e+00 1179
28 TraesCS1B01G059000 chr7A 86.784 1082 114 22 2321 3381 721661374 721660301 0.000000e+00 1179
29 TraesCS1B01G059000 chr7A 97.951 244 5 0 328 571 627156676 627156433 1.430000e-114 424
30 TraesCS1B01G059000 chr7A 96.020 201 8 0 999 1199 721587650 721587450 1.160000e-85 327
31 TraesCS1B01G059000 chr7A 96.020 201 8 0 999 1199 721662304 721662104 1.160000e-85 327
32 TraesCS1B01G059000 chr3B 87.331 813 82 17 1442 2251 787978534 787977740 0.000000e+00 911
33 TraesCS1B01G059000 chr3B 96.979 331 9 1 2 331 596082466 596082136 4.880000e-154 555
34 TraesCS1B01G059000 chr3B 96.697 333 10 1 6 337 140315891 140316223 1.750000e-153 553
35 TraesCS1B01G059000 chr3B 79.834 724 146 0 2350 3073 817353377 817352654 2.960000e-146 529
36 TraesCS1B01G059000 chr3B 96.457 254 9 0 328 581 15138046 15138299 1.860000e-113 420
37 TraesCS1B01G059000 chr5B 86.748 815 83 18 1440 2251 462479844 462479052 0.000000e+00 883
38 TraesCS1B01G059000 chr2B 86.430 818 90 15 1440 2253 73467865 73468665 0.000000e+00 876
39 TraesCS1B01G059000 chr2B 80.894 246 21 15 1656 1900 726456000 726455780 2.060000e-38 171
40 TraesCS1B01G059000 chr4B 97.561 328 7 1 5 331 495310470 495310797 1.050000e-155 560
41 TraesCS1B01G059000 chr4B 97.248 327 8 1 6 331 624379814 624379488 1.750000e-153 553
42 TraesCS1B01G059000 chr3D 80.579 726 141 0 2350 3075 607667244 607666519 1.050000e-155 560
43 TraesCS1B01G059000 chr3D 80.164 731 131 12 2350 3073 610166417 610167140 6.350000e-148 534
44 TraesCS1B01G059000 chr3D 76.744 645 143 5 2432 3073 607409140 607408500 1.910000e-93 353
45 TraesCS1B01G059000 chr3D 81.301 246 21 19 1656 1900 424687142 424687363 4.430000e-40 176
46 TraesCS1B01G059000 chr3A 80.548 730 134 6 2350 3075 740078834 740078109 4.880000e-154 555
47 TraesCS1B01G059000 chr3A 97.581 248 5 1 328 574 52445341 52445094 1.430000e-114 424
48 TraesCS1B01G059000 chr3A 96.094 256 10 0 328 583 481022814 481022559 6.670000e-113 418
49 TraesCS1B01G059000 chr4D 90.524 401 27 7 6 400 228324921 228324526 1.780000e-143 520
50 TraesCS1B01G059000 chr4D 90.025 401 29 7 6 400 268642187 268641792 3.850000e-140 508
51 TraesCS1B01G059000 chr6A 97.967 246 5 0 328 573 38757848 38758093 1.110000e-115 427
52 TraesCS1B01G059000 chr2D 90.688 247 21 2 2007 2251 16557166 16556920 1.160000e-85 327
53 TraesCS1B01G059000 chr6D 85.942 313 27 13 919 1224 425870723 425871025 6.960000e-83 318


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G059000 chr1B 41640891 41645205 4314 True 7969.000000 7969 100.000000 1 4315 1 chr1B.!!$R1 4314
1 TraesCS1B01G059000 chr1B 443825796 443826358 562 False 630.000000 630 87.368000 6 556 1 chr1B.!!$F1 550
2 TraesCS1B01G059000 chr1B 622180062 622180783 721 True 547.000000 547 80.495000 2352 3073 1 chr1B.!!$R2 721
3 TraesCS1B01G059000 chr1B 41449641 41450579 938 True 229.500000 294 86.820500 3699 4315 2 chr1B.!!$R3 616
4 TraesCS1B01G059000 chr1A 27258171 27260944 2773 False 1478.000000 2257 86.582500 729 3601 2 chr1A.!!$F2 2872
5 TraesCS1B01G059000 chr1A 547275895 547276612 717 False 518.000000 518 79.863000 2350 3073 1 chr1A.!!$F1 723
6 TraesCS1B01G059000 chr1D 25954143 25958051 3908 True 998.333333 2076 86.765333 596 4315 3 chr1D.!!$R1 3719
7 TraesCS1B01G059000 chr1D 452346690 452347614 924 False 416.000000 586 85.885000 1008 3073 2 chr1D.!!$F2 2065
8 TraesCS1B01G059000 chr7D 626050406 626052608 2202 True 798.500000 1275 88.760500 967 3508 2 chr7D.!!$R2 2541
9 TraesCS1B01G059000 chr7D 626027959 626031741 3782 True 368.666667 604 88.115000 999 3078 3 chr7D.!!$R1 2079
10 TraesCS1B01G059000 chr7B 725853060 725855316 2256 False 794.500000 1256 88.407000 967 3600 2 chr7B.!!$F3 2633
11 TraesCS1B01G059000 chr7A 721585647 721587650 2003 True 753.000000 1179 91.402000 999 3381 2 chr7A.!!$R2 2382
12 TraesCS1B01G059000 chr7A 721660301 721662304 2003 True 753.000000 1179 91.402000 999 3381 2 chr7A.!!$R3 2382
13 TraesCS1B01G059000 chr3B 787977740 787978534 794 True 911.000000 911 87.331000 1442 2251 1 chr3B.!!$R2 809
14 TraesCS1B01G059000 chr3B 817352654 817353377 723 True 529.000000 529 79.834000 2350 3073 1 chr3B.!!$R3 723
15 TraesCS1B01G059000 chr5B 462479052 462479844 792 True 883.000000 883 86.748000 1440 2251 1 chr5B.!!$R1 811
16 TraesCS1B01G059000 chr2B 73467865 73468665 800 False 876.000000 876 86.430000 1440 2253 1 chr2B.!!$F1 813
17 TraesCS1B01G059000 chr3D 607666519 607667244 725 True 560.000000 560 80.579000 2350 3075 1 chr3D.!!$R2 725
18 TraesCS1B01G059000 chr3D 610166417 610167140 723 False 534.000000 534 80.164000 2350 3073 1 chr3D.!!$F2 723
19 TraesCS1B01G059000 chr3D 607408500 607409140 640 True 353.000000 353 76.744000 2432 3073 1 chr3D.!!$R1 641
20 TraesCS1B01G059000 chr3A 740078109 740078834 725 True 555.000000 555 80.548000 2350 3075 1 chr3A.!!$R3 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 588 0.035317 TGTGACCAGCCTAACAGCAG 59.965 55.0 0.00 0.0 34.23 4.24 F
1529 1634 0.104120 TTGTAGATGGTCGCGGATGG 59.896 55.0 6.13 0.0 0.00 3.51 F
2641 2968 0.318441 CCAAGCTCGTCTCCAGTCAA 59.682 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2542 0.170561 AGTGTAGGTCGCATCGTCAC 59.829 55.0 0.00 0.00 0.0 3.67 R
3154 5695 0.179062 GAAGATCGGGCTGCACAGAT 60.179 55.0 1.50 5.81 0.0 2.90 R
4058 7406 0.108472 GGGCCTGCTCAAAATGAAGC 60.108 55.0 0.84 0.00 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.748388 GCTAGTACTCCCTCCTTTCCA 58.252 52.381 0.00 0.00 0.00 3.53
52 53 5.305128 AGGCTCAATTCAAAAATCTCACCAA 59.695 36.000 0.00 0.00 0.00 3.67
53 54 6.013984 AGGCTCAATTCAAAAATCTCACCAAT 60.014 34.615 0.00 0.00 0.00 3.16
58 59 7.874016 TCAATTCAAAAATCTCACCAATCAAGG 59.126 33.333 0.00 0.00 0.00 3.61
64 65 7.636150 AAAATCTCACCAATCAAGGTAGATG 57.364 36.000 0.00 0.00 40.77 2.90
80 81 4.202264 GGTAGATGGTGAGTGGTGGAATAG 60.202 50.000 0.00 0.00 0.00 1.73
84 85 4.015872 TGGTGAGTGGTGGAATAGTTTC 57.984 45.455 0.00 0.00 0.00 2.78
109 111 6.858993 CGTAGTTTGCAAAAGCACCTAATTAA 59.141 34.615 14.67 0.00 0.00 1.40
333 343 3.277416 ACTGGAAAGGAGGGAGTAACT 57.723 47.619 0.00 0.00 0.00 2.24
340 350 4.886496 AAGGAGGGAGTAACTTACACAC 57.114 45.455 1.79 0.00 0.00 3.82
341 351 4.129317 AGGAGGGAGTAACTTACACACT 57.871 45.455 1.14 1.14 35.68 3.55
364 374 7.229106 CACTTCCCTAGACTATGTTACTACCTC 59.771 44.444 0.00 0.00 0.00 3.85
383 393 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
384 394 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
385 395 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
389 399 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
392 402 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
393 403 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
401 411 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
403 413 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
405 415 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
406 416 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
439 449 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
440 450 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
441 451 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
442 452 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
443 453 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
444 454 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
445 455 3.316308 ACTCATTGTTTCTTGGAGTGTGC 59.684 43.478 0.00 0.00 37.43 4.57
446 456 2.290367 TCATTGTTTCTTGGAGTGTGCG 59.710 45.455 0.00 0.00 0.00 5.34
447 457 2.031258 TTGTTTCTTGGAGTGTGCGA 57.969 45.000 0.00 0.00 0.00 5.10
448 458 2.254546 TGTTTCTTGGAGTGTGCGAT 57.745 45.000 0.00 0.00 0.00 4.58
449 459 1.872952 TGTTTCTTGGAGTGTGCGATG 59.127 47.619 0.00 0.00 0.00 3.84
450 460 1.873591 GTTTCTTGGAGTGTGCGATGT 59.126 47.619 0.00 0.00 0.00 3.06
451 461 2.254546 TTCTTGGAGTGTGCGATGTT 57.745 45.000 0.00 0.00 0.00 2.71
452 462 1.795768 TCTTGGAGTGTGCGATGTTC 58.204 50.000 0.00 0.00 0.00 3.18
453 463 0.798776 CTTGGAGTGTGCGATGTTCC 59.201 55.000 0.00 0.00 0.00 3.62
454 464 0.948623 TTGGAGTGTGCGATGTTCCG 60.949 55.000 0.00 0.00 0.00 4.30
455 465 2.100631 GGAGTGTGCGATGTTCCGG 61.101 63.158 0.00 0.00 0.00 5.14
456 466 1.374252 GAGTGTGCGATGTTCCGGT 60.374 57.895 0.00 0.00 0.00 5.28
457 467 0.108992 GAGTGTGCGATGTTCCGGTA 60.109 55.000 0.00 0.00 0.00 4.02
458 468 0.319083 AGTGTGCGATGTTCCGGTAA 59.681 50.000 0.00 0.00 0.00 2.85
459 469 1.066430 AGTGTGCGATGTTCCGGTAAT 60.066 47.619 0.00 0.00 0.00 1.89
460 470 1.735571 GTGTGCGATGTTCCGGTAATT 59.264 47.619 0.00 0.00 0.00 1.40
461 471 2.160813 GTGTGCGATGTTCCGGTAATTT 59.839 45.455 0.00 0.00 0.00 1.82
462 472 3.371591 GTGTGCGATGTTCCGGTAATTTA 59.628 43.478 0.00 0.00 0.00 1.40
463 473 3.619483 TGTGCGATGTTCCGGTAATTTAG 59.381 43.478 0.00 0.00 0.00 1.85
464 474 2.610374 TGCGATGTTCCGGTAATTTAGC 59.390 45.455 0.00 1.27 0.00 3.09
465 475 2.870411 GCGATGTTCCGGTAATTTAGCT 59.130 45.455 0.00 0.00 0.00 3.32
466 476 4.053295 GCGATGTTCCGGTAATTTAGCTA 58.947 43.478 0.00 0.00 0.00 3.32
467 477 4.150098 GCGATGTTCCGGTAATTTAGCTAG 59.850 45.833 0.00 0.00 0.00 3.42
468 478 5.287226 CGATGTTCCGGTAATTTAGCTAGT 58.713 41.667 0.00 0.00 0.00 2.57
469 479 5.751990 CGATGTTCCGGTAATTTAGCTAGTT 59.248 40.000 0.00 0.00 0.00 2.24
470 480 6.919662 CGATGTTCCGGTAATTTAGCTAGTTA 59.080 38.462 0.00 0.00 0.00 2.24
471 481 7.096312 CGATGTTCCGGTAATTTAGCTAGTTAC 60.096 40.741 16.74 16.74 0.00 2.50
472 482 6.340522 TGTTCCGGTAATTTAGCTAGTTACC 58.659 40.000 25.64 25.64 42.39 2.85
473 483 6.070881 TGTTCCGGTAATTTAGCTAGTTACCA 60.071 38.462 29.97 19.05 44.79 3.25
474 484 5.906073 TCCGGTAATTTAGCTAGTTACCAC 58.094 41.667 29.97 16.43 44.79 4.16
475 485 4.741676 CCGGTAATTTAGCTAGTTACCACG 59.258 45.833 29.97 22.50 44.79 4.94
476 486 5.450412 CCGGTAATTTAGCTAGTTACCACGA 60.450 44.000 29.97 2.45 44.79 4.35
477 487 5.684626 CGGTAATTTAGCTAGTTACCACGAG 59.315 44.000 29.97 19.25 44.79 4.18
483 493 2.563471 CTAGTTACCACGAGCACCTC 57.437 55.000 0.00 0.00 0.00 3.85
484 494 2.093106 CTAGTTACCACGAGCACCTCT 58.907 52.381 0.00 0.00 0.00 3.69
485 495 0.889306 AGTTACCACGAGCACCTCTC 59.111 55.000 0.00 0.00 38.47 3.20
486 496 0.889306 GTTACCACGAGCACCTCTCT 59.111 55.000 0.00 0.00 39.70 3.10
487 497 1.272769 GTTACCACGAGCACCTCTCTT 59.727 52.381 0.00 0.00 39.70 2.85
488 498 1.629043 TACCACGAGCACCTCTCTTT 58.371 50.000 0.00 0.00 39.70 2.52
489 499 0.759346 ACCACGAGCACCTCTCTTTT 59.241 50.000 0.00 0.00 39.70 2.27
490 500 1.270358 ACCACGAGCACCTCTCTTTTC 60.270 52.381 0.00 0.00 39.70 2.29
491 501 1.270305 CCACGAGCACCTCTCTTTTCA 60.270 52.381 0.00 0.00 39.70 2.69
492 502 2.613977 CCACGAGCACCTCTCTTTTCAT 60.614 50.000 0.00 0.00 39.70 2.57
493 503 3.070018 CACGAGCACCTCTCTTTTCATT 58.930 45.455 0.00 0.00 39.70 2.57
494 504 4.245660 CACGAGCACCTCTCTTTTCATTA 58.754 43.478 0.00 0.00 39.70 1.90
495 505 4.690748 CACGAGCACCTCTCTTTTCATTAA 59.309 41.667 0.00 0.00 39.70 1.40
496 506 5.179368 CACGAGCACCTCTCTTTTCATTAAA 59.821 40.000 0.00 0.00 39.70 1.52
497 507 5.940470 ACGAGCACCTCTCTTTTCATTAAAT 59.060 36.000 0.00 0.00 39.70 1.40
498 508 7.064609 CACGAGCACCTCTCTTTTCATTAAATA 59.935 37.037 0.00 0.00 39.70 1.40
499 509 7.770897 ACGAGCACCTCTCTTTTCATTAAATAT 59.229 33.333 0.00 0.00 39.70 1.28
500 510 8.066595 CGAGCACCTCTCTTTTCATTAAATATG 58.933 37.037 0.00 0.00 39.70 1.78
501 511 8.814038 AGCACCTCTCTTTTCATTAAATATGT 57.186 30.769 0.00 0.00 0.00 2.29
502 512 8.680903 AGCACCTCTCTTTTCATTAAATATGTG 58.319 33.333 0.00 0.00 0.00 3.21
503 513 8.462016 GCACCTCTCTTTTCATTAAATATGTGT 58.538 33.333 0.00 0.00 0.00 3.72
504 514 9.994432 CACCTCTCTTTTCATTAAATATGTGTC 57.006 33.333 0.00 0.00 0.00 3.67
505 515 9.739276 ACCTCTCTTTTCATTAAATATGTGTCA 57.261 29.630 0.00 0.00 0.00 3.58
506 516 9.994432 CCTCTCTTTTCATTAAATATGTGTCAC 57.006 33.333 0.00 0.00 0.00 3.67
519 529 8.746922 AAATATGTGTCACATAAGCAAAGTTG 57.253 30.769 25.55 0.00 43.50 3.16
520 530 5.772825 ATGTGTCACATAAGCAAAGTTGT 57.227 34.783 16.99 0.00 36.99 3.32
521 531 6.875948 ATGTGTCACATAAGCAAAGTTGTA 57.124 33.333 16.99 0.00 36.99 2.41
522 532 6.875948 TGTGTCACATAAGCAAAGTTGTAT 57.124 33.333 0.18 0.00 0.00 2.29
523 533 7.270757 TGTGTCACATAAGCAAAGTTGTATT 57.729 32.000 0.18 0.00 0.00 1.89
524 534 7.138081 TGTGTCACATAAGCAAAGTTGTATTG 58.862 34.615 0.18 0.00 0.00 1.90
525 535 6.582295 GTGTCACATAAGCAAAGTTGTATTGG 59.418 38.462 0.00 0.00 0.00 3.16
526 536 6.488344 TGTCACATAAGCAAAGTTGTATTGGA 59.512 34.615 0.00 0.00 0.00 3.53
527 537 7.023575 GTCACATAAGCAAAGTTGTATTGGAG 58.976 38.462 0.00 0.00 0.00 3.86
528 538 6.714810 TCACATAAGCAAAGTTGTATTGGAGT 59.285 34.615 0.00 0.00 0.00 3.85
529 539 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
530 540 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
531 541 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
532 542 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
533 543 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
534 544 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
535 545 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
536 546 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
537 547 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
538 548 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
539 549 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
540 550 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
541 551 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
542 552 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
548 558 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
549 559 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
550 560 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
551 561 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
552 562 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
553 563 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
554 564 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
555 565 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
556 566 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
557 567 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
558 568 2.972153 ACTCCTAAGTTCCTCCCCAT 57.028 50.000 0.00 0.00 28.74 4.00
559 569 3.222394 ACTCCTAAGTTCCTCCCCATT 57.778 47.619 0.00 0.00 28.74 3.16
560 570 2.846827 ACTCCTAAGTTCCTCCCCATTG 59.153 50.000 0.00 0.00 28.74 2.82
561 571 2.846827 CTCCTAAGTTCCTCCCCATTGT 59.153 50.000 0.00 0.00 0.00 2.71
562 572 2.576191 TCCTAAGTTCCTCCCCATTGTG 59.424 50.000 0.00 0.00 0.00 3.33
563 573 2.576191 CCTAAGTTCCTCCCCATTGTGA 59.424 50.000 0.00 0.00 0.00 3.58
564 574 2.586648 AAGTTCCTCCCCATTGTGAC 57.413 50.000 0.00 0.00 0.00 3.67
565 575 0.698818 AGTTCCTCCCCATTGTGACC 59.301 55.000 0.00 0.00 0.00 4.02
566 576 0.404040 GTTCCTCCCCATTGTGACCA 59.596 55.000 0.00 0.00 0.00 4.02
567 577 0.698238 TTCCTCCCCATTGTGACCAG 59.302 55.000 0.00 0.00 0.00 4.00
568 578 1.379044 CCTCCCCATTGTGACCAGC 60.379 63.158 0.00 0.00 0.00 4.85
569 579 1.379044 CTCCCCATTGTGACCAGCC 60.379 63.158 0.00 0.00 0.00 4.85
570 580 1.852157 TCCCCATTGTGACCAGCCT 60.852 57.895 0.00 0.00 0.00 4.58
571 581 0.548926 TCCCCATTGTGACCAGCCTA 60.549 55.000 0.00 0.00 0.00 3.93
572 582 0.331278 CCCCATTGTGACCAGCCTAA 59.669 55.000 0.00 0.00 0.00 2.69
573 583 1.463674 CCCATTGTGACCAGCCTAAC 58.536 55.000 0.00 0.00 0.00 2.34
574 584 1.271871 CCCATTGTGACCAGCCTAACA 60.272 52.381 0.00 0.00 0.00 2.41
575 585 2.086869 CCATTGTGACCAGCCTAACAG 58.913 52.381 0.00 0.00 0.00 3.16
576 586 1.470098 CATTGTGACCAGCCTAACAGC 59.530 52.381 0.00 0.00 0.00 4.40
577 587 0.472044 TTGTGACCAGCCTAACAGCA 59.528 50.000 0.00 0.00 34.23 4.41
578 588 0.035317 TGTGACCAGCCTAACAGCAG 59.965 55.000 0.00 0.00 34.23 4.24
579 589 1.003355 TGACCAGCCTAACAGCAGC 60.003 57.895 0.00 0.00 34.23 5.25
580 590 1.746991 GACCAGCCTAACAGCAGCC 60.747 63.158 0.00 0.00 34.23 4.85
581 591 2.352422 CCAGCCTAACAGCAGCCA 59.648 61.111 0.00 0.00 34.23 4.75
582 592 1.303561 CCAGCCTAACAGCAGCCAA 60.304 57.895 0.00 0.00 34.23 4.52
583 593 0.682209 CCAGCCTAACAGCAGCCAAT 60.682 55.000 0.00 0.00 34.23 3.16
584 594 0.737219 CAGCCTAACAGCAGCCAATC 59.263 55.000 0.00 0.00 34.23 2.67
585 595 0.394899 AGCCTAACAGCAGCCAATCC 60.395 55.000 0.00 0.00 34.23 3.01
586 596 0.394899 GCCTAACAGCAGCCAATCCT 60.395 55.000 0.00 0.00 0.00 3.24
587 597 1.134098 GCCTAACAGCAGCCAATCCTA 60.134 52.381 0.00 0.00 0.00 2.94
588 598 2.683742 GCCTAACAGCAGCCAATCCTAA 60.684 50.000 0.00 0.00 0.00 2.69
589 599 3.825328 CCTAACAGCAGCCAATCCTAAT 58.175 45.455 0.00 0.00 0.00 1.73
590 600 3.817647 CCTAACAGCAGCCAATCCTAATC 59.182 47.826 0.00 0.00 0.00 1.75
591 601 2.355010 ACAGCAGCCAATCCTAATCC 57.645 50.000 0.00 0.00 0.00 3.01
592 602 1.565759 ACAGCAGCCAATCCTAATCCA 59.434 47.619 0.00 0.00 0.00 3.41
593 603 2.025037 ACAGCAGCCAATCCTAATCCAA 60.025 45.455 0.00 0.00 0.00 3.53
594 604 2.360165 CAGCAGCCAATCCTAATCCAAC 59.640 50.000 0.00 0.00 0.00 3.77
610 620 1.472480 CCAACTGCCGGTAAAATCCTG 59.528 52.381 1.90 0.00 0.00 3.86
617 627 2.017049 CCGGTAAAATCCTGCTCCTTG 58.983 52.381 0.00 0.00 0.00 3.61
633 646 1.134610 CCTTGTACGGCCGTTAATCCT 60.135 52.381 38.94 12.44 0.00 3.24
645 658 2.993899 CGTTAATCCTATCCATCGCCAC 59.006 50.000 0.00 0.00 0.00 5.01
647 660 1.434188 AATCCTATCCATCGCCACCA 58.566 50.000 0.00 0.00 0.00 4.17
649 662 1.302033 CCTATCCATCGCCACCAGC 60.302 63.158 0.00 0.00 38.52 4.85
714 733 1.339151 CGGGGAGGAAGAGGAAGTTTG 60.339 57.143 0.00 0.00 0.00 2.93
727 753 2.032376 GTTTGTTACCCGGCCCGA 59.968 61.111 3.71 0.00 0.00 5.14
729 755 0.961857 GTTTGTTACCCGGCCCGATT 60.962 55.000 3.71 0.00 0.00 3.34
758 784 3.676873 GCCAGTTCGTAGGGATAAACGAA 60.677 47.826 6.23 6.23 41.41 3.85
762 788 3.405170 TCGTAGGGATAAACGAACGAC 57.595 47.619 0.14 0.00 34.74 4.34
764 790 3.063997 TCGTAGGGATAAACGAACGACTC 59.936 47.826 0.14 0.00 34.74 3.36
765 791 3.064545 CGTAGGGATAAACGAACGACTCT 59.935 47.826 0.14 0.00 32.35 3.24
766 792 3.505464 AGGGATAAACGAACGACTCTG 57.495 47.619 0.14 0.00 0.00 3.35
767 793 2.824341 AGGGATAAACGAACGACTCTGT 59.176 45.455 0.14 0.00 0.00 3.41
768 794 3.257624 AGGGATAAACGAACGACTCTGTT 59.742 43.478 0.14 0.00 34.02 3.16
769 795 3.992427 GGGATAAACGAACGACTCTGTTT 59.008 43.478 0.14 3.89 35.96 2.83
770 796 4.143179 GGGATAAACGAACGACTCTGTTTG 60.143 45.833 0.14 0.00 38.86 2.93
822 848 0.389948 GCCGCTAATCCTATCCACCG 60.390 60.000 0.00 0.00 0.00 4.94
823 849 0.966920 CCGCTAATCCTATCCACCGT 59.033 55.000 0.00 0.00 0.00 4.83
844 870 2.269241 CACCGGCCTTCCTTCCTC 59.731 66.667 0.00 0.00 0.00 3.71
917 943 1.884464 CCCACATCGCCTCATCACG 60.884 63.158 0.00 0.00 0.00 4.35
924 951 3.785859 GCCTCATCACGCCCTCCA 61.786 66.667 0.00 0.00 0.00 3.86
943 970 4.033776 CTCCCGGCAGCCTTCCAA 62.034 66.667 10.54 0.00 0.00 3.53
946 973 4.659172 CCGGCAGCCTTCCAACCA 62.659 66.667 10.54 0.00 0.00 3.67
947 974 2.597217 CGGCAGCCTTCCAACCAA 60.597 61.111 10.54 0.00 0.00 3.67
948 975 2.919494 CGGCAGCCTTCCAACCAAC 61.919 63.158 10.54 0.00 0.00 3.77
949 976 2.574018 GGCAGCCTTCCAACCAACC 61.574 63.158 3.29 0.00 0.00 3.77
950 977 2.574018 GCAGCCTTCCAACCAACCC 61.574 63.158 0.00 0.00 0.00 4.11
951 978 1.908299 CAGCCTTCCAACCAACCCC 60.908 63.158 0.00 0.00 0.00 4.95
952 979 2.603473 GCCTTCCAACCAACCCCC 60.603 66.667 0.00 0.00 0.00 5.40
953 980 2.939298 CCTTCCAACCAACCCCCA 59.061 61.111 0.00 0.00 0.00 4.96
954 981 1.234529 CCTTCCAACCAACCCCCAA 59.765 57.895 0.00 0.00 0.00 4.12
957 984 1.595058 TTCCAACCAACCCCCAACCT 61.595 55.000 0.00 0.00 0.00 3.50
961 988 2.071636 AACCAACCCCCAACCTACCG 62.072 60.000 0.00 0.00 0.00 4.02
996 1026 2.025155 CGTAGCAGCTTCCTCTCCTTA 58.975 52.381 0.00 0.00 0.00 2.69
1199 1239 1.188863 GCCTACGTCCTCCAAGGTAA 58.811 55.000 0.00 0.00 36.53 2.85
1200 1240 1.761198 GCCTACGTCCTCCAAGGTAAT 59.239 52.381 0.00 0.00 36.53 1.89
1209 1277 2.035449 CCTCCAAGGTAATCATACGCGA 59.965 50.000 15.93 0.00 32.51 5.87
1210 1278 3.050619 CTCCAAGGTAATCATACGCGAC 58.949 50.000 15.93 0.00 32.51 5.19
1211 1279 1.784856 CCAAGGTAATCATACGCGACG 59.215 52.381 15.93 0.00 32.51 5.12
1217 1285 3.785189 ATCATACGCGACGCCCCAC 62.785 63.158 15.93 0.00 0.00 4.61
1238 1311 3.917760 CTCGCCCGACCCCATCTC 61.918 72.222 0.00 0.00 0.00 2.75
1242 1315 2.442272 CCCGACCCCATCTCGAGT 60.442 66.667 13.13 0.00 32.65 4.18
1266 1339 3.918102 CGATCGATCGGAAGTGTCA 57.082 52.632 34.54 0.00 45.93 3.58
1286 1360 4.704833 TGCTGCTCTGTTCGGGGC 62.705 66.667 0.00 0.00 0.00 5.80
1301 1375 1.604147 GGGGCCTGAATTTTGGGTCG 61.604 60.000 0.84 0.00 0.00 4.79
1305 1379 1.471287 GCCTGAATTTTGGGTCGTACC 59.529 52.381 0.00 0.00 37.60 3.34
1375 1449 6.018751 GCACATCTAGATCGAAAAATGCAGTA 60.019 38.462 1.03 0.00 0.00 2.74
1376 1450 7.340699 CACATCTAGATCGAAAAATGCAGTAC 58.659 38.462 1.03 0.00 0.00 2.73
1411 1487 0.169230 AGTGTCGTCGCTCTCATGAC 59.831 55.000 0.00 0.00 0.00 3.06
1428 1504 5.114081 TCATGACTTATCTGTCGAGTACGA 58.886 41.667 0.00 0.00 46.56 3.43
1529 1634 0.104120 TTGTAGATGGTCGCGGATGG 59.896 55.000 6.13 0.00 0.00 3.51
1532 1637 1.744320 TAGATGGTCGCGGATGGGTG 61.744 60.000 6.13 0.00 0.00 4.61
1533 1638 4.856801 ATGGTCGCGGATGGGTGC 62.857 66.667 6.13 0.00 0.00 5.01
1558 1824 5.282510 ACTTGTTCGTTTCAGTCTCTAGTG 58.717 41.667 0.00 0.00 0.00 2.74
1589 1855 2.633967 TGCAGCAGTGGATTGGAATTTT 59.366 40.909 0.00 0.00 0.00 1.82
1628 1903 1.017177 TTATTCGACTGCACGGTGCC 61.017 55.000 28.57 13.52 44.23 5.01
1655 1930 4.452455 AGTTCTGAAATCGTGCCTAGTTTG 59.548 41.667 0.00 0.00 0.00 2.93
1662 1941 3.455990 TCGTGCCTAGTTTGTTGTGTA 57.544 42.857 0.00 0.00 0.00 2.90
1664 1943 3.128349 CGTGCCTAGTTTGTTGTGTAGT 58.872 45.455 0.00 0.00 0.00 2.73
1676 1964 3.866910 TGTTGTGTAGTTTTCGTCAGGTC 59.133 43.478 0.00 0.00 0.00 3.85
1926 2242 6.406370 TCCTCTGATCGTAACACATTTCATT 58.594 36.000 0.00 0.00 0.00 2.57
1963 2279 4.780815 AGTGTCACATTCTCTGTTTTGGA 58.219 39.130 5.62 0.00 35.29 3.53
1971 2287 6.144402 CACATTCTCTGTTTTGGAAATTTCGG 59.856 38.462 11.95 0.00 35.29 4.30
1986 2302 8.740906 TGGAAATTTCGGTGCAGTAAATTATTA 58.259 29.630 11.95 2.63 32.98 0.98
1987 2303 9.744468 GGAAATTTCGGTGCAGTAAATTATTAT 57.256 29.630 11.95 0.70 32.98 1.28
2094 2410 9.212593 AGTAATATCCAAATATTTGCCCTGTTT 57.787 29.630 20.67 11.64 38.66 2.83
2150 2467 7.281549 GGTAGTAACTTGTTGAACCTTTTCTCA 59.718 37.037 0.00 0.00 32.36 3.27
2154 2471 6.530019 ACTTGTTGAACCTTTTCTCAATGT 57.470 33.333 0.00 0.00 34.26 2.71
2194 2513 6.623486 CAGTTGATTGATGCTGGTTTTATCA 58.377 36.000 0.00 0.00 0.00 2.15
2223 2542 4.216902 TGATCTGTGATGCTGGTTTTTCTG 59.783 41.667 0.00 0.00 0.00 3.02
2257 2576 4.202326 ACCTACACTAGTGTCTGTTTTGGG 60.202 45.833 31.11 18.12 43.74 4.12
2264 2583 4.568152 AGTGTCTGTTTTGGGAATTTCG 57.432 40.909 0.00 0.00 0.00 3.46
2286 2605 9.781834 TTTCGTTGCTGTAAATTATTATTGGAG 57.218 29.630 0.00 0.00 0.00 3.86
2476 2803 2.164865 CTGAGTCTGCCACGGAGCTT 62.165 60.000 0.00 0.00 0.00 3.74
2479 2806 1.598130 GTCTGCCACGGAGCTTGTT 60.598 57.895 0.00 0.00 0.00 2.83
2491 2818 2.421619 GAGCTTGTTGTCCTCTTCCTG 58.578 52.381 0.00 0.00 0.00 3.86
2506 2833 2.429930 CTGGGCGACACCTCCAAA 59.570 61.111 0.00 0.00 39.10 3.28
2549 2876 0.535102 CAACTTCCAGCTCACCGGTT 60.535 55.000 2.97 0.00 0.00 4.44
2584 2911 1.004918 CGGCTTCTCCACGGAGTTT 60.005 57.895 12.77 0.00 41.61 2.66
2638 2965 2.164865 CTGCCAAGCTCGTCTCCAGT 62.165 60.000 0.00 0.00 0.00 4.00
2641 2968 0.318441 CCAAGCTCGTCTCCAGTCAA 59.682 55.000 0.00 0.00 0.00 3.18
2761 3088 1.204786 TGGACGTGGACATCCCCAAT 61.205 55.000 0.00 0.00 38.06 3.16
2818 3146 1.456287 GCTGGTCAAGGAGGTTGGT 59.544 57.895 0.00 0.00 36.71 3.67
3075 5598 1.633432 CATCACCACCCCCAAGTAAGA 59.367 52.381 0.00 0.00 0.00 2.10
3078 5601 2.041081 TCACCACCCCCAAGTAAGAATG 59.959 50.000 0.00 0.00 0.00 2.67
3079 5602 2.041081 CACCACCCCCAAGTAAGAATGA 59.959 50.000 0.00 0.00 0.00 2.57
3080 5603 2.719705 ACCACCCCCAAGTAAGAATGAA 59.280 45.455 0.00 0.00 0.00 2.57
3082 5605 3.499563 CCACCCCCAAGTAAGAATGAACA 60.500 47.826 0.00 0.00 0.00 3.18
3084 5607 4.399303 CACCCCCAAGTAAGAATGAACATC 59.601 45.833 0.00 0.00 0.00 3.06
3086 5609 4.641989 CCCCCAAGTAAGAATGAACATCTG 59.358 45.833 0.00 0.00 0.00 2.90
3087 5610 5.500234 CCCCAAGTAAGAATGAACATCTGA 58.500 41.667 0.00 0.00 0.00 3.27
3090 5613 7.308435 CCCAAGTAAGAATGAACATCTGAAAC 58.692 38.462 0.00 0.00 0.00 2.78
3091 5614 7.175641 CCCAAGTAAGAATGAACATCTGAAACT 59.824 37.037 0.00 0.00 0.00 2.66
3092 5615 8.019669 CCAAGTAAGAATGAACATCTGAAACTG 58.980 37.037 0.00 0.00 0.00 3.16
3093 5616 7.678947 AGTAAGAATGAACATCTGAAACTGG 57.321 36.000 0.00 0.00 0.00 4.00
3096 5619 6.323203 AGAATGAACATCTGAAACTGGTTG 57.677 37.500 0.00 0.00 0.00 3.77
3100 5623 4.756642 TGAACATCTGAAACTGGTTGCTAG 59.243 41.667 0.00 0.00 0.00 3.42
3109 5650 1.747355 ACTGGTTGCTAGCATTGCATC 59.253 47.619 20.13 4.10 40.34 3.91
3143 5684 8.936070 TTTCATCCATGATTTTTGAGCTAATG 57.064 30.769 0.00 0.00 36.56 1.90
3144 5685 6.509656 TCATCCATGATTTTTGAGCTAATGC 58.490 36.000 0.00 0.00 40.05 3.56
3145 5686 5.918426 TCCATGATTTTTGAGCTAATGCA 57.082 34.783 0.00 0.00 42.74 3.96
3146 5687 5.898174 TCCATGATTTTTGAGCTAATGCAG 58.102 37.500 0.00 0.00 42.74 4.41
3150 5691 6.519679 TGATTTTTGAGCTAATGCAGATGT 57.480 33.333 0.00 0.00 42.74 3.06
3151 5692 6.927416 TGATTTTTGAGCTAATGCAGATGTT 58.073 32.000 0.00 0.00 42.74 2.71
3153 5694 8.689061 TGATTTTTGAGCTAATGCAGATGTTAT 58.311 29.630 0.00 0.00 42.74 1.89
3395 5948 6.219473 AGGATATTGATACTCTTTGAGCGTG 58.781 40.000 0.00 0.00 32.04 5.34
3396 5949 5.406780 GGATATTGATACTCTTTGAGCGTGG 59.593 44.000 0.00 0.00 32.04 4.94
3397 5950 3.678056 TTGATACTCTTTGAGCGTGGT 57.322 42.857 0.00 0.00 32.04 4.16
3398 5951 2.959516 TGATACTCTTTGAGCGTGGTG 58.040 47.619 0.00 0.00 32.04 4.17
3399 5952 2.560981 TGATACTCTTTGAGCGTGGTGA 59.439 45.455 0.00 0.00 32.04 4.02
3436 5989 1.535462 CTGGTGGTGGTTTTCATCGAC 59.465 52.381 0.00 0.00 0.00 4.20
3437 5990 1.142060 TGGTGGTGGTTTTCATCGACT 59.858 47.619 0.00 0.00 0.00 4.18
3532 6090 4.966787 ATGTTTGTGGCCGGCCGT 62.967 61.111 39.00 14.15 39.42 5.68
3561 6119 4.880120 TCTGAGAACTGATGAATGCAATCC 59.120 41.667 0.00 0.00 0.00 3.01
3575 6133 7.095910 TGAATGCAATCCATTGTTAAATTCGT 58.904 30.769 0.00 0.00 44.02 3.85
3647 6205 3.489229 GGCGTGCTTCTTTTCTGTTTCTT 60.489 43.478 0.00 0.00 0.00 2.52
3651 6209 6.658831 CGTGCTTCTTTTCTGTTTCTTCATA 58.341 36.000 0.00 0.00 0.00 2.15
3693 6254 8.406297 ACTATTTCTTCACTTCTGTTTTGGAAC 58.594 33.333 0.00 0.00 36.29 3.62
3701 6262 5.345741 CACTTCTGTTTTGGAACACAGTTTG 59.654 40.000 5.76 1.72 40.71 2.93
3703 6264 5.913137 TCTGTTTTGGAACACAGTTTGAT 57.087 34.783 5.76 0.00 40.71 2.57
3735 6718 7.997107 AAAACCTTTTCGTTTACAATCTTCC 57.003 32.000 0.00 0.00 34.89 3.46
3777 6761 4.002906 TCGTCTTTGTATGGCTTCAGTT 57.997 40.909 0.00 0.00 0.00 3.16
3804 6788 2.031870 GGGCCACCTCATGTTTATTCC 58.968 52.381 4.39 0.00 0.00 3.01
3815 6799 1.101635 GTTTATTCCGAGCAGGCCCC 61.102 60.000 0.00 0.00 40.77 5.80
3823 6807 4.290622 AGCAGGCCCCCACTTGTG 62.291 66.667 0.00 0.00 0.00 3.33
3824 6808 4.284550 GCAGGCCCCCACTTGTGA 62.285 66.667 0.00 0.00 0.00 3.58
3825 6809 2.520458 CAGGCCCCCACTTGTGAA 59.480 61.111 0.00 0.00 0.00 3.18
3826 6810 1.903404 CAGGCCCCCACTTGTGAAC 60.903 63.158 0.00 0.00 0.00 3.18
3827 6811 2.600470 GGCCCCCACTTGTGAACC 60.600 66.667 1.89 0.00 0.00 3.62
3828 6812 2.600470 GCCCCCACTTGTGAACCC 60.600 66.667 1.89 0.00 0.00 4.11
3829 6813 3.146828 GCCCCCACTTGTGAACCCT 62.147 63.158 1.89 0.00 0.00 4.34
3830 6814 1.228552 CCCCCACTTGTGAACCCTG 60.229 63.158 1.89 0.00 0.00 4.45
3842 7107 7.444183 CACTTGTGAACCCTGTTTCTATTTCTA 59.556 37.037 0.00 0.00 0.00 2.10
3852 7118 8.541234 CCCTGTTTCTATTTCTAAGTACCTCTT 58.459 37.037 0.00 0.00 39.89 2.85
3853 7119 9.945904 CCTGTTTCTATTTCTAAGTACCTCTTT 57.054 33.333 0.00 0.00 37.56 2.52
3885 7151 7.390013 AGGGAAACTACCTCTTCTTTTAGTT 57.610 36.000 0.00 0.00 36.53 2.24
3886 7152 7.451732 AGGGAAACTACCTCTTCTTTTAGTTC 58.548 38.462 0.00 0.00 34.41 3.01
3887 7153 7.292827 AGGGAAACTACCTCTTCTTTTAGTTCT 59.707 37.037 0.00 0.00 34.41 3.01
3888 7154 8.591940 GGGAAACTACCTCTTCTTTTAGTTCTA 58.408 37.037 0.00 0.00 34.41 2.10
3889 7155 9.993454 GGAAACTACCTCTTCTTTTAGTTCTAA 57.007 33.333 0.00 0.00 34.41 2.10
3919 7185 7.442656 AGTACCTCTTTTCAATTCGAGAAAGA 58.557 34.615 0.00 0.00 36.45 2.52
3952 7219 8.867097 ACTTCGATATTATACCCTGTTGTACAT 58.133 33.333 0.00 0.00 0.00 2.29
3970 7237 4.351874 ACATAACTACGCCCATATGCTT 57.648 40.909 0.00 0.00 30.61 3.91
3971 7238 4.065088 ACATAACTACGCCCATATGCTTG 58.935 43.478 0.00 0.00 30.61 4.01
4035 7383 1.202110 CGTGATGTCTTTGCATGGCTC 60.202 52.381 0.00 0.00 0.00 4.70
4058 7406 0.821711 TTTTGTTGGGCTGGTCTCCG 60.822 55.000 0.00 0.00 0.00 4.63
4059 7407 3.842925 TTGTTGGGCTGGTCTCCGC 62.843 63.158 0.00 0.00 0.00 5.54
4090 7438 0.112412 CAGGCCCCCACTTGTTAACT 59.888 55.000 7.22 0.00 0.00 2.24
4129 7477 6.872628 TGTCTTCACTACGTCTTCTTTCTA 57.127 37.500 0.00 0.00 0.00 2.10
4134 7482 7.749570 TCTTCACTACGTCTTCTTTCTAATTCG 59.250 37.037 0.00 0.00 0.00 3.34
4136 7484 7.587629 TCACTACGTCTTCTTTCTAATTCGAA 58.412 34.615 0.00 0.00 0.00 3.71
4137 7485 8.077991 TCACTACGTCTTCTTTCTAATTCGAAA 58.922 33.333 0.00 5.18 0.00 3.46
4230 7596 6.710692 GGCAGAACCAAATTGTATTTTCAG 57.289 37.500 0.00 0.00 38.86 3.02
4231 7597 6.454795 GGCAGAACCAAATTGTATTTTCAGA 58.545 36.000 0.00 0.00 38.86 3.27
4232 7598 6.587608 GGCAGAACCAAATTGTATTTTCAGAG 59.412 38.462 0.00 0.00 38.86 3.35
4233 7599 7.147976 GCAGAACCAAATTGTATTTTCAGAGT 58.852 34.615 0.00 0.00 0.00 3.24
4244 7610 7.439157 TGTATTTTCAGAGTTTCACATCAGG 57.561 36.000 0.00 0.00 0.00 3.86
4260 7626 3.393426 TCAGGGGGACGATAAACTACT 57.607 47.619 0.00 0.00 0.00 2.57
4309 7679 1.582610 TTCGGCGACCAAATCAAGCC 61.583 55.000 10.16 0.00 44.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.696187 CTGGAAAGGAGGGAGTACTAGC 59.304 54.545 0.00 0.00 0.00 3.42
1 2 3.983821 ACTGGAAAGGAGGGAGTACTAG 58.016 50.000 0.00 0.00 0.00 2.57
3 4 3.277416 AACTGGAAAGGAGGGAGTACT 57.723 47.619 0.00 0.00 0.00 2.73
4 5 5.695424 ATAAACTGGAAAGGAGGGAGTAC 57.305 43.478 0.00 0.00 0.00 2.73
52 53 3.198635 CACCACTCACCATCTACCTTGAT 59.801 47.826 0.00 0.00 0.00 2.57
53 54 2.567169 CACCACTCACCATCTACCTTGA 59.433 50.000 0.00 0.00 0.00 3.02
58 59 3.914426 ATTCCACCACTCACCATCTAC 57.086 47.619 0.00 0.00 0.00 2.59
64 65 3.000727 CGAAACTATTCCACCACTCACC 58.999 50.000 0.00 0.00 31.52 4.02
232 234 4.849813 TCCCATCACATGTTCAGATTCT 57.150 40.909 0.00 0.00 0.00 2.40
315 317 4.285260 GTGTAAGTTACTCCCTCCTTTCCA 59.715 45.833 14.00 0.00 0.00 3.53
316 318 4.285260 TGTGTAAGTTACTCCCTCCTTTCC 59.715 45.833 14.00 0.00 0.00 3.13
333 343 7.892241 AGTAACATAGTCTAGGGAAGTGTGTAA 59.108 37.037 0.00 0.00 0.00 2.41
340 350 6.716173 GGAGGTAGTAACATAGTCTAGGGAAG 59.284 46.154 0.00 0.00 0.00 3.46
341 351 6.160992 TGGAGGTAGTAACATAGTCTAGGGAA 59.839 42.308 0.00 0.00 0.00 3.97
364 374 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
377 387 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
383 393 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
384 394 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
385 395 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
389 399 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
392 402 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
393 403 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
429 439 1.872952 CATCGCACACTCCAAGAAACA 59.127 47.619 0.00 0.00 0.00 2.83
430 440 1.873591 ACATCGCACACTCCAAGAAAC 59.126 47.619 0.00 0.00 0.00 2.78
432 442 2.143122 GAACATCGCACACTCCAAGAA 58.857 47.619 0.00 0.00 0.00 2.52
433 443 1.608025 GGAACATCGCACACTCCAAGA 60.608 52.381 0.00 0.00 0.00 3.02
434 444 0.798776 GGAACATCGCACACTCCAAG 59.201 55.000 0.00 0.00 0.00 3.61
439 449 0.319083 TTACCGGAACATCGCACACT 59.681 50.000 9.46 0.00 0.00 3.55
440 450 1.365699 ATTACCGGAACATCGCACAC 58.634 50.000 9.46 0.00 0.00 3.82
441 451 2.102070 AATTACCGGAACATCGCACA 57.898 45.000 9.46 0.00 0.00 4.57
442 452 3.545426 GCTAAATTACCGGAACATCGCAC 60.545 47.826 9.46 0.00 0.00 5.34
443 453 2.610374 GCTAAATTACCGGAACATCGCA 59.390 45.455 9.46 0.00 0.00 5.10
444 454 2.870411 AGCTAAATTACCGGAACATCGC 59.130 45.455 9.46 1.98 0.00 4.58
445 455 5.287226 ACTAGCTAAATTACCGGAACATCG 58.713 41.667 9.46 0.00 0.00 3.84
446 456 7.170489 GGTAACTAGCTAAATTACCGGAACATC 59.830 40.741 22.05 5.98 38.76 3.06
447 457 6.988580 GGTAACTAGCTAAATTACCGGAACAT 59.011 38.462 22.05 0.00 38.76 2.71
448 458 6.340522 GGTAACTAGCTAAATTACCGGAACA 58.659 40.000 22.05 0.00 38.76 3.18
449 459 6.834959 GGTAACTAGCTAAATTACCGGAAC 57.165 41.667 22.05 7.47 38.76 3.62
454 464 5.461407 GCTCGTGGTAACTAGCTAAATTACC 59.539 44.000 26.20 26.20 45.46 2.85
455 465 6.020041 GTGCTCGTGGTAACTAGCTAAATTAC 60.020 42.308 14.95 14.95 38.06 1.89
456 466 6.038356 GTGCTCGTGGTAACTAGCTAAATTA 58.962 40.000 0.00 0.00 38.06 1.40
457 467 4.868734 GTGCTCGTGGTAACTAGCTAAATT 59.131 41.667 0.00 0.00 38.06 1.82
458 468 4.430908 GTGCTCGTGGTAACTAGCTAAAT 58.569 43.478 0.00 0.00 38.06 1.40
459 469 3.367703 GGTGCTCGTGGTAACTAGCTAAA 60.368 47.826 0.00 0.00 38.06 1.85
460 470 2.165030 GGTGCTCGTGGTAACTAGCTAA 59.835 50.000 0.00 0.00 38.06 3.09
461 471 1.747355 GGTGCTCGTGGTAACTAGCTA 59.253 52.381 0.00 0.00 38.06 3.32
462 472 0.531200 GGTGCTCGTGGTAACTAGCT 59.469 55.000 0.00 0.00 38.06 3.32
463 473 0.531200 AGGTGCTCGTGGTAACTAGC 59.469 55.000 0.00 0.00 37.82 3.42
464 474 2.093106 AGAGGTGCTCGTGGTAACTAG 58.907 52.381 0.00 0.00 35.36 2.57
465 475 2.089980 GAGAGGTGCTCGTGGTAACTA 58.910 52.381 0.00 0.00 35.36 2.24
466 476 0.889306 GAGAGGTGCTCGTGGTAACT 59.111 55.000 0.00 0.00 35.36 2.24
467 477 3.420397 GAGAGGTGCTCGTGGTAAC 57.580 57.895 0.00 0.00 35.36 2.50
475 485 8.897752 ACATATTTAATGAAAAGAGAGGTGCTC 58.102 33.333 0.00 0.00 44.29 4.26
476 486 8.680903 CACATATTTAATGAAAAGAGAGGTGCT 58.319 33.333 0.00 0.00 0.00 4.40
477 487 8.462016 ACACATATTTAATGAAAAGAGAGGTGC 58.538 33.333 0.00 0.00 29.72 5.01
478 488 9.994432 GACACATATTTAATGAAAAGAGAGGTG 57.006 33.333 0.00 0.00 31.47 4.00
479 489 9.739276 TGACACATATTTAATGAAAAGAGAGGT 57.261 29.630 0.00 0.00 0.00 3.85
480 490 9.994432 GTGACACATATTTAATGAAAAGAGAGG 57.006 33.333 0.00 0.00 0.00 3.69
493 503 9.838975 CAACTTTGCTTATGTGACACATATTTA 57.161 29.630 25.12 12.38 40.41 1.40
494 504 8.359642 ACAACTTTGCTTATGTGACACATATTT 58.640 29.630 25.12 6.87 40.41 1.40
495 505 7.885297 ACAACTTTGCTTATGTGACACATATT 58.115 30.769 25.12 13.81 40.41 1.28
496 506 7.452880 ACAACTTTGCTTATGTGACACATAT 57.547 32.000 25.12 7.93 40.41 1.78
497 507 6.875948 ACAACTTTGCTTATGTGACACATA 57.124 33.333 21.76 21.76 39.88 2.29
498 508 5.772825 ACAACTTTGCTTATGTGACACAT 57.227 34.783 23.83 23.83 42.35 3.21
499 509 6.875948 ATACAACTTTGCTTATGTGACACA 57.124 33.333 11.41 11.41 0.00 3.72
500 510 6.582295 CCAATACAACTTTGCTTATGTGACAC 59.418 38.462 0.00 0.00 0.00 3.67
501 511 6.488344 TCCAATACAACTTTGCTTATGTGACA 59.512 34.615 0.00 0.00 0.00 3.58
502 512 6.908825 TCCAATACAACTTTGCTTATGTGAC 58.091 36.000 0.00 0.00 0.00 3.67
503 513 6.714810 ACTCCAATACAACTTTGCTTATGTGA 59.285 34.615 0.00 0.00 0.00 3.58
504 514 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
505 515 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
506 516 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
507 517 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
508 518 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
509 519 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
510 520 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
511 521 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
512 522 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
513 523 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
514 524 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
515 525 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
516 526 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
517 527 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
518 528 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
519 529 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
525 535 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
526 536 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
527 537 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
528 538 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
529 539 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
530 540 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
531 541 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
532 542 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
533 543 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
534 544 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
535 545 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
536 546 3.447950 TGGGGAGGAACTTAGGAGTAAC 58.552 50.000 0.00 0.00 41.55 2.50
537 547 3.858696 TGGGGAGGAACTTAGGAGTAA 57.141 47.619 0.00 0.00 41.55 2.24
538 548 4.037927 CAATGGGGAGGAACTTAGGAGTA 58.962 47.826 0.00 0.00 41.55 2.59
539 549 2.846827 CAATGGGGAGGAACTTAGGAGT 59.153 50.000 0.00 0.00 41.55 3.85
540 550 2.846827 ACAATGGGGAGGAACTTAGGAG 59.153 50.000 0.00 0.00 41.55 3.69
541 551 2.576191 CACAATGGGGAGGAACTTAGGA 59.424 50.000 0.00 0.00 41.55 2.94
542 552 2.576191 TCACAATGGGGAGGAACTTAGG 59.424 50.000 0.00 0.00 41.55 2.69
543 553 3.610911 GTCACAATGGGGAGGAACTTAG 58.389 50.000 0.00 0.00 41.55 2.18
544 554 2.307686 GGTCACAATGGGGAGGAACTTA 59.692 50.000 0.00 0.00 41.55 2.24
545 555 1.075536 GGTCACAATGGGGAGGAACTT 59.924 52.381 0.00 0.00 41.55 2.66
547 557 0.404040 TGGTCACAATGGGGAGGAAC 59.596 55.000 0.00 0.00 0.00 3.62
548 558 0.698238 CTGGTCACAATGGGGAGGAA 59.302 55.000 0.00 0.00 0.00 3.36
549 559 1.852157 GCTGGTCACAATGGGGAGGA 61.852 60.000 0.00 0.00 0.00 3.71
550 560 1.379044 GCTGGTCACAATGGGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
551 561 1.379044 GGCTGGTCACAATGGGGAG 60.379 63.158 0.00 0.00 0.00 4.30
552 562 0.548926 TAGGCTGGTCACAATGGGGA 60.549 55.000 0.00 0.00 0.00 4.81
553 563 0.331278 TTAGGCTGGTCACAATGGGG 59.669 55.000 0.00 0.00 0.00 4.96
554 564 1.271871 TGTTAGGCTGGTCACAATGGG 60.272 52.381 0.00 0.00 0.00 4.00
555 565 2.086869 CTGTTAGGCTGGTCACAATGG 58.913 52.381 0.00 0.00 0.00 3.16
556 566 1.470098 GCTGTTAGGCTGGTCACAATG 59.530 52.381 0.00 0.00 0.00 2.82
557 567 1.073763 TGCTGTTAGGCTGGTCACAAT 59.926 47.619 0.00 0.00 0.00 2.71
558 568 0.472044 TGCTGTTAGGCTGGTCACAA 59.528 50.000 0.00 0.00 0.00 3.33
559 569 0.035317 CTGCTGTTAGGCTGGTCACA 59.965 55.000 0.00 0.00 0.00 3.58
560 570 1.301677 GCTGCTGTTAGGCTGGTCAC 61.302 60.000 0.00 0.00 0.00 3.67
561 571 1.003355 GCTGCTGTTAGGCTGGTCA 60.003 57.895 0.00 0.00 0.00 4.02
562 572 1.746991 GGCTGCTGTTAGGCTGGTC 60.747 63.158 0.00 0.00 39.89 4.02
563 573 2.067932 TTGGCTGCTGTTAGGCTGGT 62.068 55.000 0.00 0.00 43.13 4.00
564 574 0.682209 ATTGGCTGCTGTTAGGCTGG 60.682 55.000 0.00 0.00 43.13 4.85
565 575 0.737219 GATTGGCTGCTGTTAGGCTG 59.263 55.000 0.00 0.00 43.13 4.85
566 576 0.394899 GGATTGGCTGCTGTTAGGCT 60.395 55.000 0.00 0.00 43.13 4.58
567 577 0.394899 AGGATTGGCTGCTGTTAGGC 60.395 55.000 0.00 0.00 43.03 3.93
568 578 3.281727 TTAGGATTGGCTGCTGTTAGG 57.718 47.619 0.00 0.00 0.00 2.69
569 579 3.817647 GGATTAGGATTGGCTGCTGTTAG 59.182 47.826 0.00 0.00 0.00 2.34
570 580 3.201930 TGGATTAGGATTGGCTGCTGTTA 59.798 43.478 0.00 0.00 0.00 2.41
571 581 2.025037 TGGATTAGGATTGGCTGCTGTT 60.025 45.455 0.00 0.00 0.00 3.16
572 582 1.565759 TGGATTAGGATTGGCTGCTGT 59.434 47.619 0.00 0.00 0.00 4.40
573 583 2.353357 TGGATTAGGATTGGCTGCTG 57.647 50.000 0.00 0.00 0.00 4.41
574 584 2.243221 AGTTGGATTAGGATTGGCTGCT 59.757 45.455 0.00 0.00 0.00 4.24
575 585 2.360165 CAGTTGGATTAGGATTGGCTGC 59.640 50.000 0.00 0.00 0.00 5.25
576 586 2.360165 GCAGTTGGATTAGGATTGGCTG 59.640 50.000 0.00 0.00 0.00 4.85
577 587 2.659428 GCAGTTGGATTAGGATTGGCT 58.341 47.619 0.00 0.00 0.00 4.75
578 588 1.683385 GGCAGTTGGATTAGGATTGGC 59.317 52.381 0.00 0.00 0.00 4.52
579 589 1.949525 CGGCAGTTGGATTAGGATTGG 59.050 52.381 0.00 0.00 0.00 3.16
580 590 1.949525 CCGGCAGTTGGATTAGGATTG 59.050 52.381 0.00 0.00 0.00 2.67
581 591 1.564348 ACCGGCAGTTGGATTAGGATT 59.436 47.619 0.00 0.00 0.00 3.01
582 592 1.213296 ACCGGCAGTTGGATTAGGAT 58.787 50.000 0.00 0.00 0.00 3.24
583 593 1.868713 TACCGGCAGTTGGATTAGGA 58.131 50.000 0.00 0.00 0.00 2.94
584 594 2.702592 TTACCGGCAGTTGGATTAGG 57.297 50.000 0.00 0.00 0.00 2.69
585 595 4.036380 GGATTTTACCGGCAGTTGGATTAG 59.964 45.833 0.00 0.00 0.00 1.73
586 596 3.949113 GGATTTTACCGGCAGTTGGATTA 59.051 43.478 0.00 0.00 0.00 1.75
587 597 2.758423 GGATTTTACCGGCAGTTGGATT 59.242 45.455 0.00 0.00 0.00 3.01
588 598 2.025321 AGGATTTTACCGGCAGTTGGAT 60.025 45.455 0.00 0.00 34.73 3.41
589 599 1.353022 AGGATTTTACCGGCAGTTGGA 59.647 47.619 0.00 0.00 34.73 3.53
590 600 1.472480 CAGGATTTTACCGGCAGTTGG 59.528 52.381 0.00 0.00 34.73 3.77
591 601 2.919666 CAGGATTTTACCGGCAGTTG 57.080 50.000 0.00 0.00 34.73 3.16
610 620 0.390209 TTAACGGCCGTACAAGGAGC 60.390 55.000 34.44 0.00 0.00 4.70
617 627 2.297033 TGGATAGGATTAACGGCCGTAC 59.703 50.000 34.44 21.79 0.00 3.67
693 706 1.554583 AACTTCCTCTTCCTCCCCGC 61.555 60.000 0.00 0.00 0.00 6.13
696 709 3.510531 AACAAACTTCCTCTTCCTCCC 57.489 47.619 0.00 0.00 0.00 4.30
703 716 1.271217 GCCGGGTAACAAACTTCCTCT 60.271 52.381 2.18 0.00 39.74 3.69
714 733 1.227645 GGTAATCGGGCCGGGTAAC 60.228 63.158 27.98 17.08 0.00 2.50
727 753 1.947597 TACGAACTGGCCGCGGTAAT 61.948 55.000 28.70 8.97 0.00 1.89
729 755 3.055080 CTACGAACTGGCCGCGGTA 62.055 63.158 28.70 15.56 0.00 4.02
758 784 4.989168 GGATCAGTAAACAAACAGAGTCGT 59.011 41.667 0.00 0.00 0.00 4.34
759 785 5.230942 AGGATCAGTAAACAAACAGAGTCG 58.769 41.667 0.00 0.00 0.00 4.18
760 786 8.779354 ATTAGGATCAGTAAACAAACAGAGTC 57.221 34.615 0.00 0.00 0.00 3.36
761 787 7.824779 GGATTAGGATCAGTAAACAAACAGAGT 59.175 37.037 0.00 0.00 33.77 3.24
762 788 7.824289 TGGATTAGGATCAGTAAACAAACAGAG 59.176 37.037 0.00 0.00 33.77 3.35
764 790 7.148239 GGTGGATTAGGATCAGTAAACAAACAG 60.148 40.741 0.00 0.00 33.77 3.16
765 791 6.657541 GGTGGATTAGGATCAGTAAACAAACA 59.342 38.462 0.00 0.00 33.77 2.83
766 792 6.095021 GGGTGGATTAGGATCAGTAAACAAAC 59.905 42.308 0.00 0.00 33.77 2.93
767 793 6.184789 GGGTGGATTAGGATCAGTAAACAAA 58.815 40.000 0.00 0.00 33.77 2.83
768 794 5.339695 GGGGTGGATTAGGATCAGTAAACAA 60.340 44.000 0.00 0.00 33.77 2.83
769 795 4.165372 GGGGTGGATTAGGATCAGTAAACA 59.835 45.833 0.00 0.00 33.77 2.83
770 796 4.715713 GGGGTGGATTAGGATCAGTAAAC 58.284 47.826 0.00 0.00 33.77 2.01
844 870 2.694992 GGGGTGGGGTTAGGAGGG 60.695 72.222 0.00 0.00 0.00 4.30
890 916 1.285950 GCGATGTGGGATCGATCGA 59.714 57.895 21.86 21.86 43.59 3.59
892 918 0.389166 GAGGCGATGTGGGATCGATC 60.389 60.000 17.36 17.36 43.59 3.69
893 919 1.115326 TGAGGCGATGTGGGATCGAT 61.115 55.000 8.20 0.00 43.59 3.59
894 920 1.115326 ATGAGGCGATGTGGGATCGA 61.115 55.000 8.20 0.00 43.59 3.59
934 961 2.526110 GGGGTTGGTTGGAAGGCT 59.474 61.111 0.00 0.00 0.00 4.58
937 964 1.118965 GGTTGGGGGTTGGTTGGAAG 61.119 60.000 0.00 0.00 0.00 3.46
938 965 1.075151 GGTTGGGGGTTGGTTGGAA 60.075 57.895 0.00 0.00 0.00 3.53
939 966 0.701659 TAGGTTGGGGGTTGGTTGGA 60.702 55.000 0.00 0.00 0.00 3.53
941 968 0.541063 GGTAGGTTGGGGGTTGGTTG 60.541 60.000 0.00 0.00 0.00 3.77
942 969 1.855598 GGTAGGTTGGGGGTTGGTT 59.144 57.895 0.00 0.00 0.00 3.67
943 970 2.531601 CGGTAGGTTGGGGGTTGGT 61.532 63.158 0.00 0.00 0.00 3.67
946 973 2.226315 GGTCGGTAGGTTGGGGGTT 61.226 63.158 0.00 0.00 0.00 4.11
947 974 2.608678 GGTCGGTAGGTTGGGGGT 60.609 66.667 0.00 0.00 0.00 4.95
948 975 2.285144 AGGTCGGTAGGTTGGGGG 60.285 66.667 0.00 0.00 0.00 5.40
949 976 1.305887 AGAGGTCGGTAGGTTGGGG 60.306 63.158 0.00 0.00 0.00 4.96
950 977 1.664321 CGAGAGGTCGGTAGGTTGGG 61.664 65.000 0.00 0.00 42.87 4.12
951 978 0.679002 TCGAGAGGTCGGTAGGTTGG 60.679 60.000 0.00 0.00 46.80 3.77
952 979 1.334243 GATCGAGAGGTCGGTAGGTTG 59.666 57.143 0.00 0.00 46.80 3.77
953 980 1.677942 GATCGAGAGGTCGGTAGGTT 58.322 55.000 0.00 0.00 46.80 3.50
954 981 3.400439 GATCGAGAGGTCGGTAGGT 57.600 57.895 0.00 0.00 46.80 3.08
996 1026 1.115326 TCAGATCCACCGCCATCGAT 61.115 55.000 0.00 0.00 38.10 3.59
1199 1239 3.533105 TGGGGCGTCGCGTATGAT 61.533 61.111 11.75 0.00 0.00 2.45
1200 1240 4.501714 GTGGGGCGTCGCGTATGA 62.502 66.667 11.75 0.00 0.00 2.15
1224 1297 3.917760 CTCGAGATGGGGTCGGGC 61.918 72.222 6.58 0.00 38.02 6.13
1228 1301 2.490165 TCGAACTCGAGATGGGGTC 58.510 57.895 21.68 0.00 44.22 4.46
1229 1302 4.757773 TCGAACTCGAGATGGGGT 57.242 55.556 21.68 0.00 44.22 4.95
1260 1333 0.467384 ACAGAGCAGCAACTGACACT 59.533 50.000 21.22 1.90 37.54 3.55
1266 1339 1.302033 CCCGAACAGAGCAGCAACT 60.302 57.895 0.00 0.00 0.00 3.16
1305 1379 0.962489 ATCCGCGACCATCTAAGAGG 59.038 55.000 8.23 0.00 0.00 3.69
1309 1383 2.710440 TCGATCCGCGACCATCTAA 58.290 52.632 8.23 0.00 45.59 2.10
1328 1402 3.638484 GAACAGGAACCAACAAATTCGG 58.362 45.455 0.00 0.00 0.00 4.30
1337 1411 1.202758 AGATGTGCGAACAGGAACCAA 60.203 47.619 1.02 0.00 0.00 3.67
1375 1449 5.221461 ACGACACTTTCAGTTCCAATCTAGT 60.221 40.000 0.00 0.00 0.00 2.57
1376 1450 5.230942 ACGACACTTTCAGTTCCAATCTAG 58.769 41.667 0.00 0.00 0.00 2.43
1394 1469 0.881796 AAGTCATGAGAGCGACGACA 59.118 50.000 0.00 0.00 37.23 4.35
1428 1504 2.609459 GCACGATTTCATCAGAACCGAT 59.391 45.455 0.00 0.00 32.39 4.18
1481 1580 6.663523 AGTAAAGGGCTGCAATATTACTTGTT 59.336 34.615 0.50 0.00 31.48 2.83
1498 1603 5.523916 CGACCATCTACAATTCAGTAAAGGG 59.476 44.000 0.00 0.00 0.00 3.95
1529 1634 2.159435 ACTGAAACGAACAAGTTGCACC 60.159 45.455 1.81 0.00 34.89 5.01
1532 1637 3.309954 AGAGACTGAAACGAACAAGTTGC 59.690 43.478 1.81 0.00 34.14 4.17
1533 1638 5.749109 ACTAGAGACTGAAACGAACAAGTTG 59.251 40.000 0.00 0.00 34.14 3.16
1534 1639 5.749109 CACTAGAGACTGAAACGAACAAGTT 59.251 40.000 0.00 0.00 35.59 2.66
1558 1824 1.863454 CCACTGCTGCAATCGATCTAC 59.137 52.381 3.02 0.00 0.00 2.59
1624 1899 2.744202 ACGATTTCAGAACTGATGGCAC 59.256 45.455 5.34 0.00 39.64 5.01
1628 1903 3.005554 AGGCACGATTTCAGAACTGATG 58.994 45.455 5.34 2.28 39.64 3.07
1655 1930 3.866910 TGACCTGACGAAAACTACACAAC 59.133 43.478 0.00 0.00 0.00 3.32
1662 1941 3.118738 AGACACTTGACCTGACGAAAACT 60.119 43.478 0.00 0.00 0.00 2.66
1664 1943 3.194861 CAGACACTTGACCTGACGAAAA 58.805 45.455 0.00 0.00 0.00 2.29
1676 1964 1.354040 GGATCTGACGCAGACACTTG 58.646 55.000 10.97 0.00 43.63 3.16
1781 2077 6.036083 CCAACGATCACGATCTCTTAAACAAT 59.964 38.462 5.55 0.00 42.66 2.71
1926 2242 3.444034 GTGACACTAGCACTGGTCAGATA 59.556 47.826 4.84 0.00 40.59 1.98
2013 2329 4.702131 GTGCTGGTACAAAATTCCTCAGAT 59.298 41.667 0.00 0.00 38.70 2.90
2094 2410 6.594788 AGTCCTAGTACAACGAAATACCAA 57.405 37.500 0.00 0.00 0.00 3.67
2123 2439 7.114095 AGAAAAGGTTCAACAAGTTACTACCA 58.886 34.615 3.05 0.00 36.09 3.25
2124 2440 7.281549 TGAGAAAAGGTTCAACAAGTTACTACC 59.718 37.037 0.00 0.00 36.09 3.18
2150 2467 8.924303 TCAACTGCTAGTCCATAGTAATACATT 58.076 33.333 0.00 0.00 33.65 2.71
2154 2471 9.143155 TCAATCAACTGCTAGTCCATAGTAATA 57.857 33.333 0.00 0.00 33.65 0.98
2164 2482 3.311871 CCAGCATCAATCAACTGCTAGTC 59.688 47.826 0.00 0.00 44.09 2.59
2194 2513 4.533815 ACCAGCATCACAGATCAATCATT 58.466 39.130 0.00 0.00 0.00 2.57
2223 2542 0.170561 AGTGTAGGTCGCATCGTCAC 59.829 55.000 0.00 0.00 0.00 3.67
2377 2701 1.601419 CGGCGACCACCTTCTCCTTA 61.601 60.000 0.00 0.00 0.00 2.69
2476 2803 1.761174 GCCCAGGAAGAGGACAACA 59.239 57.895 0.00 0.00 0.00 3.33
2479 2806 2.119611 TCGCCCAGGAAGAGGACA 59.880 61.111 0.00 0.00 0.00 4.02
2491 2818 2.359975 CCTTTGGAGGTGTCGCCC 60.360 66.667 0.00 0.00 38.32 6.13
2549 2876 2.184322 GGTGAAGATGCCGCTCGA 59.816 61.111 0.00 0.00 0.00 4.04
2593 2920 1.920325 CTCCTTGAGGTCCCAGGCA 60.920 63.158 0.00 0.00 36.34 4.75
2686 3013 3.381983 TCAGCATCGACCGGCACT 61.382 61.111 0.00 0.00 0.00 4.40
2818 3146 0.836606 TGACAAGGTCAGCACCAAGA 59.163 50.000 0.00 0.00 46.68 3.02
3075 5598 4.586001 AGCAACCAGTTTCAGATGTTCATT 59.414 37.500 0.00 0.00 0.00 2.57
3078 5601 4.378874 GCTAGCAACCAGTTTCAGATGTTC 60.379 45.833 10.63 0.00 0.00 3.18
3079 5602 3.503748 GCTAGCAACCAGTTTCAGATGTT 59.496 43.478 10.63 0.00 0.00 2.71
3080 5603 3.077359 GCTAGCAACCAGTTTCAGATGT 58.923 45.455 10.63 0.00 0.00 3.06
3082 5605 3.423539 TGCTAGCAACCAGTTTCAGAT 57.576 42.857 16.84 0.00 0.00 2.90
3084 5607 3.829948 CAATGCTAGCAACCAGTTTCAG 58.170 45.455 23.54 0.00 0.00 3.02
3086 5609 2.030007 TGCAATGCTAGCAACCAGTTTC 60.030 45.455 23.54 6.10 39.39 2.78
3087 5610 1.962807 TGCAATGCTAGCAACCAGTTT 59.037 42.857 23.54 7.39 39.39 2.66
3090 5613 1.746787 TGATGCAATGCTAGCAACCAG 59.253 47.619 23.54 12.62 46.27 4.00
3091 5614 1.473677 GTGATGCAATGCTAGCAACCA 59.526 47.619 23.54 18.31 46.27 3.67
3092 5615 1.747355 AGTGATGCAATGCTAGCAACC 59.253 47.619 23.54 13.14 46.27 3.77
3093 5616 2.681848 AGAGTGATGCAATGCTAGCAAC 59.318 45.455 23.54 13.38 46.27 4.17
3096 5619 2.286872 ACAGAGTGATGCAATGCTAGC 58.713 47.619 8.10 8.10 0.00 3.42
3100 5623 5.239359 TGAAATACAGAGTGATGCAATGC 57.761 39.130 0.00 0.00 0.00 3.56
3109 5650 9.297586 CAAAAATCATGGATGAAATACAGAGTG 57.702 33.333 0.00 0.00 43.16 3.51
3145 5686 3.555795 CGGGCTGCACAGATATAACATCT 60.556 47.826 1.50 0.00 0.00 2.90
3146 5687 2.738846 CGGGCTGCACAGATATAACATC 59.261 50.000 1.50 0.00 0.00 3.06
3150 5691 2.899900 AGATCGGGCTGCACAGATATAA 59.100 45.455 1.50 0.00 0.00 0.98
3151 5692 2.529632 AGATCGGGCTGCACAGATATA 58.470 47.619 1.50 0.00 0.00 0.86
3153 5694 1.069204 GAAGATCGGGCTGCACAGATA 59.931 52.381 1.50 0.00 0.00 1.98
3154 5695 0.179062 GAAGATCGGGCTGCACAGAT 60.179 55.000 1.50 5.81 0.00 2.90
3155 5696 1.219124 GAAGATCGGGCTGCACAGA 59.781 57.895 1.50 0.28 0.00 3.41
3156 5697 1.078918 TGAAGATCGGGCTGCACAG 60.079 57.895 1.50 0.00 0.00 3.66
3381 5934 2.229062 CTCTCACCACGCTCAAAGAGTA 59.771 50.000 0.00 0.00 31.39 2.59
3395 5948 2.678324 CTCAACCGAAAGACTCTCACC 58.322 52.381 0.00 0.00 0.00 4.02
3396 5949 2.062519 GCTCAACCGAAAGACTCTCAC 58.937 52.381 0.00 0.00 0.00 3.51
3397 5950 1.964223 AGCTCAACCGAAAGACTCTCA 59.036 47.619 0.00 0.00 0.00 3.27
3398 5951 2.333014 CAGCTCAACCGAAAGACTCTC 58.667 52.381 0.00 0.00 0.00 3.20
3399 5952 1.001406 CCAGCTCAACCGAAAGACTCT 59.999 52.381 0.00 0.00 0.00 3.24
3436 5989 6.811253 ACTAAGATAGATTCGCAGAGGTAG 57.189 41.667 0.00 0.00 38.43 3.18
3437 5990 6.515200 GCAACTAAGATAGATTCGCAGAGGTA 60.515 42.308 0.00 0.00 38.43 3.08
3491 6045 2.159531 TCACGATTTAACCGACGACGAT 60.160 45.455 9.28 0.00 42.66 3.73
3532 6090 2.250924 TCATCAGTTCTCAGACCAGCA 58.749 47.619 0.00 0.00 0.00 4.41
3561 6119 9.913451 AAACAATTTCACACGAATTTAACAATG 57.087 25.926 0.00 0.00 0.00 2.82
3575 6133 4.141981 ACACATGAGGCAAACAATTTCACA 60.142 37.500 0.00 0.00 0.00 3.58
3621 6179 3.146066 ACAGAAAAGAAGCACGCCAATA 58.854 40.909 0.00 0.00 0.00 1.90
3647 6205 9.793259 AAATAGTCACAAAAGAGGAAGTTATGA 57.207 29.630 0.00 0.00 0.00 2.15
3651 6209 8.753497 AAGAAATAGTCACAAAAGAGGAAGTT 57.247 30.769 0.00 0.00 0.00 2.66
3715 6698 6.148811 TGCTAGGAAGATTGTAAACGAAAAGG 59.851 38.462 0.00 0.00 0.00 3.11
3777 6761 3.182887 ACATGAGGTGGCCCATAAAAA 57.817 42.857 0.00 0.00 0.00 1.94
3782 6766 3.299503 GAATAAACATGAGGTGGCCCAT 58.700 45.455 0.00 0.00 0.00 4.00
3789 6773 3.535561 CTGCTCGGAATAAACATGAGGT 58.464 45.455 0.00 0.00 0.00 3.85
3815 6799 2.654863 AGAAACAGGGTTCACAAGTGG 58.345 47.619 0.00 0.00 0.00 4.00
3823 6807 8.319881 AGGTACTTAGAAATAGAAACAGGGTTC 58.680 37.037 0.00 0.00 27.25 3.62
3824 6808 8.215954 AGGTACTTAGAAATAGAAACAGGGTT 57.784 34.615 0.00 0.00 27.25 4.11
3825 6809 7.679025 AGAGGTACTTAGAAATAGAAACAGGGT 59.321 37.037 0.00 0.00 41.55 4.34
3826 6810 8.080363 AGAGGTACTTAGAAATAGAAACAGGG 57.920 38.462 0.00 0.00 41.55 4.45
3827 6811 9.945904 AAAGAGGTACTTAGAAATAGAAACAGG 57.054 33.333 0.00 0.00 41.55 4.00
3861 7127 7.292827 AGAACTAAAAGAAGAGGTAGTTTCCCT 59.707 37.037 0.00 0.00 37.02 4.20
3862 7128 7.451732 AGAACTAAAAGAAGAGGTAGTTTCCC 58.548 38.462 0.00 0.00 37.02 3.97
3863 7129 9.993454 TTAGAACTAAAAGAAGAGGTAGTTTCC 57.007 33.333 0.00 0.00 37.02 3.13
3893 7159 7.931948 TCTTTCTCGAATTGAAAAGAGGTACTT 59.068 33.333 0.00 0.00 40.98 2.24
3894 7160 7.442656 TCTTTCTCGAATTGAAAAGAGGTACT 58.557 34.615 0.00 0.00 35.46 2.73
3895 7161 7.653767 TCTTTCTCGAATTGAAAAGAGGTAC 57.346 36.000 0.74 0.00 33.12 3.34
3896 7162 8.671384 TTTCTTTCTCGAATTGAAAAGAGGTA 57.329 30.769 0.74 0.00 36.26 3.08
3897 7163 7.568199 TTTCTTTCTCGAATTGAAAAGAGGT 57.432 32.000 0.74 0.00 36.26 3.85
3898 7164 8.856490 TTTTTCTTTCTCGAATTGAAAAGAGG 57.144 30.769 14.54 0.00 36.26 3.69
3952 7219 3.830744 ACAAGCATATGGGCGTAGTTA 57.169 42.857 4.56 0.00 39.27 2.24
4035 7383 0.389025 GACCAGCCCAACAAAAGTGG 59.611 55.000 0.00 0.00 35.77 4.00
4058 7406 0.108472 GGGCCTGCTCAAAATGAAGC 60.108 55.000 0.84 0.00 0.00 3.86
4059 7407 0.533951 GGGGCCTGCTCAAAATGAAG 59.466 55.000 0.84 0.00 0.00 3.02
4161 7512 8.997621 TTGTATGTCAAAAGGAGTATGTAGAC 57.002 34.615 0.00 0.00 32.64 2.59
4219 7585 7.040478 CCCTGATGTGAAACTCTGAAAATACAA 60.040 37.037 0.00 0.00 38.04 2.41
4222 7588 5.945784 CCCCTGATGTGAAACTCTGAAAATA 59.054 40.000 0.00 0.00 38.04 1.40
4223 7589 4.768968 CCCCTGATGTGAAACTCTGAAAAT 59.231 41.667 0.00 0.00 38.04 1.82
4224 7590 4.144297 CCCCTGATGTGAAACTCTGAAAA 58.856 43.478 0.00 0.00 38.04 2.29
4225 7591 3.498481 CCCCCTGATGTGAAACTCTGAAA 60.498 47.826 0.00 0.00 38.04 2.69
4226 7592 2.040278 CCCCCTGATGTGAAACTCTGAA 59.960 50.000 0.00 0.00 38.04 3.02
4227 7593 1.630369 CCCCCTGATGTGAAACTCTGA 59.370 52.381 0.00 0.00 38.04 3.27
4228 7594 1.630369 TCCCCCTGATGTGAAACTCTG 59.370 52.381 0.00 0.00 38.04 3.35
4229 7595 1.630878 GTCCCCCTGATGTGAAACTCT 59.369 52.381 0.00 0.00 38.04 3.24
4230 7596 1.676014 CGTCCCCCTGATGTGAAACTC 60.676 57.143 0.00 0.00 38.04 3.01
4231 7597 0.324943 CGTCCCCCTGATGTGAAACT 59.675 55.000 0.00 0.00 38.04 2.66
4232 7598 0.323629 TCGTCCCCCTGATGTGAAAC 59.676 55.000 0.00 0.00 37.35 2.78
4233 7599 1.285280 ATCGTCCCCCTGATGTGAAA 58.715 50.000 0.00 0.00 0.00 2.69
4244 7610 3.069729 AGCATGAGTAGTTTATCGTCCCC 59.930 47.826 0.00 0.00 0.00 4.81
4260 7626 7.553760 TCAAGATCAAGTTATTTAGCAGCATGA 59.446 33.333 0.00 0.00 39.69 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.