Multiple sequence alignment - TraesCS1B01G058700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G058700 chr1B 100.000 7287 0 0 1 7287 41098448 41091162 0.000000e+00 13457.0
1 TraesCS1B01G058700 chr1B 98.333 60 1 0 5063 5122 41093329 41093270 1.000000e-18 106.0
2 TraesCS1B01G058700 chr1B 98.333 60 1 0 5120 5179 41093386 41093327 1.000000e-18 106.0
3 TraesCS1B01G058700 chr1B 94.545 55 1 2 7230 7283 654631669 654631616 4.680000e-12 84.2
4 TraesCS1B01G058700 chr1B 88.060 67 4 3 7217 7282 24604996 24605059 7.840000e-10 76.8
5 TraesCS1B01G058700 chr1D 93.403 4320 167 38 869 5122 25741787 25737520 0.000000e+00 6290.0
6 TraesCS1B01G058700 chr1D 96.290 1213 31 2 5120 6332 25737579 25736381 0.000000e+00 1978.0
7 TraesCS1B01G058700 chr1D 92.080 846 49 9 6398 7239 25736040 25735209 0.000000e+00 1175.0
8 TraesCS1B01G058700 chr1D 86.278 532 32 16 314 810 25743029 25742504 2.310000e-149 540.0
9 TraesCS1B01G058700 chr1A 89.778 2661 183 50 848 3448 26971405 26968774 0.000000e+00 3325.0
10 TraesCS1B01G058700 chr1A 94.531 2121 103 8 5120 7239 26967148 26965040 0.000000e+00 3262.0
11 TraesCS1B01G058700 chr1A 87.950 1693 104 31 3447 5122 26968698 26967089 0.000000e+00 1905.0
12 TraesCS1B01G058700 chr1A 89.434 265 22 6 214 474 26973753 26973491 5.450000e-86 329.0
13 TraesCS1B01G058700 chr1A 83.955 268 14 15 515 758 26973498 26973236 5.690000e-56 230.0
14 TraesCS1B01G058700 chr1A 85.714 98 14 0 45 142 77441099 77441196 3.600000e-18 104.0
15 TraesCS1B01G058700 chr1A 88.710 62 7 0 147 208 26987404 26987343 7.840000e-10 76.8
16 TraesCS1B01G058700 chr7D 88.000 100 8 3 44 142 195260385 195260289 1.660000e-21 115.0
17 TraesCS1B01G058700 chr5D 88.542 96 10 1 45 139 383749566 383749661 1.660000e-21 115.0
18 TraesCS1B01G058700 chr7A 85.714 105 14 1 39 142 45104907 45105011 7.730000e-20 110.0
19 TraesCS1B01G058700 chr2B 85.577 104 14 1 39 141 797191720 797191823 2.780000e-19 108.0
20 TraesCS1B01G058700 chr3D 86.598 97 12 1 47 142 91361879 91361975 1.000000e-18 106.0
21 TraesCS1B01G058700 chr3D 96.154 52 2 0 7236 7287 175405787 175405736 1.300000e-12 86.1
22 TraesCS1B01G058700 chr4B 83.810 105 16 1 39 142 2384518 2384414 1.670000e-16 99.0
23 TraesCS1B01G058700 chr2D 98.039 51 1 0 7233 7283 115398456 115398406 1.010000e-13 89.8
24 TraesCS1B01G058700 chr6D 89.855 69 5 2 7217 7283 91559511 91559579 3.620000e-13 87.9
25 TraesCS1B01G058700 chr6D 81.633 98 14 4 35 129 413767107 413767203 2.180000e-10 78.7
26 TraesCS1B01G058700 chr7B 92.982 57 4 0 7231 7287 237489415 237489359 4.680000e-12 84.2
27 TraesCS1B01G058700 chr6A 89.706 68 4 2 7217 7283 499211811 499211746 4.680000e-12 84.2
28 TraesCS1B01G058700 chr3A 88.406 69 5 3 7217 7284 186733966 186734032 6.060000e-11 80.5
29 TraesCS1B01G058700 chr6B 88.060 67 6 2 7219 7283 529769681 529769747 2.180000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G058700 chr1B 41091162 41098448 7286 True 13457.00 13457 100.00000 1 7287 1 chr1B.!!$R1 7286
1 TraesCS1B01G058700 chr1D 25735209 25743029 7820 True 2495.75 6290 92.01275 314 7239 4 chr1D.!!$R1 6925
2 TraesCS1B01G058700 chr1A 26965040 26973753 8713 True 1810.20 3325 89.12960 214 7239 5 chr1A.!!$R2 7025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.035152 TCCGTCAGATTGCATGGCTT 60.035 50.000 0.00 0.0 0.00 4.35 F
173 174 0.038166 ACCGTGGCAGATGTGGATTT 59.962 50.000 0.00 0.0 0.00 2.17 F
478 540 0.107993 TCTTGGCGGCAGAGAAGATG 60.108 55.000 12.87 0.0 0.00 2.90 F
2270 4255 0.252513 TGAGATTCGAAGGACCCCCA 60.253 55.000 3.35 0.0 33.88 4.96 F
3738 5842 0.512952 CTGACTACGCAAGCAACCAC 59.487 55.000 0.00 0.0 45.62 4.16 F
4682 6803 0.409092 AATGGCCCCACTGTCAATGA 59.591 50.000 0.00 0.0 0.00 2.57 F
5906 8028 1.920574 CACTTGCAGGAATAGACGACG 59.079 52.381 1.40 0.0 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 3687 0.254747 TAGCCCAAATCCCAACGGAG 59.745 55.000 0.00 0.0 43.12 4.63 R
1943 3900 1.545582 CCACAACCATTGACCATCACC 59.454 52.381 0.00 0.0 0.00 4.02 R
2424 4411 1.318576 GGGGGAAATCGTAATGCTGG 58.681 55.000 0.00 0.0 0.00 4.85 R
4089 6194 0.107165 GCCAGGAGGAATTACGCCTT 60.107 55.000 10.77 0.0 35.44 4.35 R
5371 7493 0.745845 GGCATAGGTGGTGCTCAGTG 60.746 60.000 0.00 0.0 42.16 3.66 R
5986 8108 0.816825 CAGCTGCTCGTGGCCATATT 60.817 55.000 9.72 0.0 40.92 1.28 R
7013 9413 0.480252 GGGGAAAGGGCAGCAGATAT 59.520 55.000 0.00 0.0 0.00 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.642755 CATGATAACCGCTCGCCC 58.357 61.111 0.00 0.00 0.00 6.13
18 19 1.961277 CATGATAACCGCTCGCCCC 60.961 63.158 0.00 0.00 0.00 5.80
19 20 3.178540 ATGATAACCGCTCGCCCCC 62.179 63.158 0.00 0.00 0.00 5.40
37 38 3.854669 CTAGTGCCTCCGCCCCTG 61.855 72.222 0.00 0.00 0.00 4.45
38 39 4.715130 TAGTGCCTCCGCCCCTGT 62.715 66.667 0.00 0.00 0.00 4.00
47 48 4.135153 CGCCCCTGTCTCCGTCAG 62.135 72.222 0.00 0.00 0.00 3.51
48 49 2.680352 GCCCCTGTCTCCGTCAGA 60.680 66.667 0.00 0.00 35.20 3.27
49 50 2.060980 GCCCCTGTCTCCGTCAGAT 61.061 63.158 0.00 0.00 35.20 2.90
50 51 1.617947 GCCCCTGTCTCCGTCAGATT 61.618 60.000 0.00 0.00 35.20 2.40
51 52 0.176680 CCCCTGTCTCCGTCAGATTG 59.823 60.000 0.00 0.00 35.20 2.67
52 53 0.460987 CCCTGTCTCCGTCAGATTGC 60.461 60.000 0.00 0.00 35.20 3.56
53 54 0.247460 CCTGTCTCCGTCAGATTGCA 59.753 55.000 0.00 0.00 35.20 4.08
54 55 1.134580 CCTGTCTCCGTCAGATTGCAT 60.135 52.381 0.00 0.00 35.20 3.96
55 56 1.931841 CTGTCTCCGTCAGATTGCATG 59.068 52.381 0.00 0.00 35.20 4.06
56 57 1.293924 GTCTCCGTCAGATTGCATGG 58.706 55.000 0.00 0.00 32.08 3.66
57 58 0.462581 TCTCCGTCAGATTGCATGGC 60.463 55.000 0.00 0.00 0.00 4.40
58 59 0.463295 CTCCGTCAGATTGCATGGCT 60.463 55.000 0.00 0.00 0.00 4.75
59 60 0.035152 TCCGTCAGATTGCATGGCTT 60.035 50.000 0.00 0.00 0.00 4.35
60 61 1.209261 TCCGTCAGATTGCATGGCTTA 59.791 47.619 0.00 0.00 0.00 3.09
61 62 2.158769 TCCGTCAGATTGCATGGCTTAT 60.159 45.455 0.00 0.00 0.00 1.73
62 63 2.620115 CCGTCAGATTGCATGGCTTATT 59.380 45.455 0.00 0.00 0.00 1.40
63 64 3.814842 CCGTCAGATTGCATGGCTTATTA 59.185 43.478 0.00 0.00 0.00 0.98
64 65 4.319766 CCGTCAGATTGCATGGCTTATTAC 60.320 45.833 0.00 0.00 0.00 1.89
65 66 4.273235 CGTCAGATTGCATGGCTTATTACA 59.727 41.667 0.00 0.00 0.00 2.41
66 67 5.049198 CGTCAGATTGCATGGCTTATTACAT 60.049 40.000 0.00 0.00 0.00 2.29
67 68 6.376978 GTCAGATTGCATGGCTTATTACATC 58.623 40.000 0.00 0.00 0.00 3.06
68 69 6.206243 GTCAGATTGCATGGCTTATTACATCT 59.794 38.462 0.00 0.00 0.00 2.90
69 70 7.388776 GTCAGATTGCATGGCTTATTACATCTA 59.611 37.037 0.00 0.00 0.00 1.98
70 71 8.105197 TCAGATTGCATGGCTTATTACATCTAT 58.895 33.333 0.00 0.00 0.00 1.98
71 72 8.182227 CAGATTGCATGGCTTATTACATCTATG 58.818 37.037 0.00 0.00 0.00 2.23
72 73 5.885230 TGCATGGCTTATTACATCTATGC 57.115 39.130 0.00 0.00 39.89 3.14
73 74 5.563592 TGCATGGCTTATTACATCTATGCT 58.436 37.500 0.00 0.00 40.08 3.79
74 75 6.710278 TGCATGGCTTATTACATCTATGCTA 58.290 36.000 0.00 0.00 40.08 3.49
75 76 7.341030 TGCATGGCTTATTACATCTATGCTAT 58.659 34.615 0.00 0.00 40.08 2.97
76 77 8.485392 TGCATGGCTTATTACATCTATGCTATA 58.515 33.333 0.00 0.00 40.08 1.31
77 78 9.330063 GCATGGCTTATTACATCTATGCTATAA 57.670 33.333 0.00 0.00 37.34 0.98
141 142 9.684448 TTTGATAAATTGCTCGTATTTTCAACA 57.316 25.926 0.00 0.00 30.73 3.33
142 143 9.853555 TTGATAAATTGCTCGTATTTTCAACAT 57.146 25.926 0.00 0.00 0.00 2.71
143 144 9.853555 TGATAAATTGCTCGTATTTTCAACATT 57.146 25.926 0.00 0.00 0.00 2.71
145 146 6.393720 AATTGCTCGTATTTTCAACATTGC 57.606 33.333 0.00 0.00 0.00 3.56
146 147 3.487536 TGCTCGTATTTTCAACATTGCG 58.512 40.909 0.00 0.00 0.00 4.85
147 148 3.058570 TGCTCGTATTTTCAACATTGCGT 60.059 39.130 0.00 0.00 0.00 5.24
148 149 3.911964 GCTCGTATTTTCAACATTGCGTT 59.088 39.130 0.00 0.00 38.83 4.84
149 150 4.029087 GCTCGTATTTTCAACATTGCGTTC 59.971 41.667 0.00 0.00 34.86 3.95
150 151 5.351233 TCGTATTTTCAACATTGCGTTCT 57.649 34.783 0.00 0.00 34.86 3.01
151 152 5.753744 TCGTATTTTCAACATTGCGTTCTT 58.246 33.333 0.00 0.00 34.86 2.52
152 153 5.623264 TCGTATTTTCAACATTGCGTTCTTG 59.377 36.000 0.00 0.00 34.86 3.02
153 154 5.398122 CGTATTTTCAACATTGCGTTCTTGT 59.602 36.000 0.00 0.00 34.86 3.16
154 155 6.575572 CGTATTTTCAACATTGCGTTCTTGTA 59.424 34.615 0.00 0.00 34.86 2.41
155 156 6.747659 ATTTTCAACATTGCGTTCTTGTAC 57.252 33.333 0.00 0.00 34.86 2.90
156 157 3.889196 TCAACATTGCGTTCTTGTACC 57.111 42.857 0.00 0.00 34.86 3.34
157 158 2.222213 TCAACATTGCGTTCTTGTACCG 59.778 45.455 0.00 0.00 34.86 4.02
158 159 1.873698 ACATTGCGTTCTTGTACCGT 58.126 45.000 0.00 0.00 0.00 4.83
159 160 1.529438 ACATTGCGTTCTTGTACCGTG 59.471 47.619 0.00 0.00 0.00 4.94
160 161 1.136085 CATTGCGTTCTTGTACCGTGG 60.136 52.381 0.00 0.00 0.00 4.94
161 162 1.500512 TTGCGTTCTTGTACCGTGGC 61.501 55.000 0.00 0.00 0.00 5.01
162 163 1.957186 GCGTTCTTGTACCGTGGCA 60.957 57.895 0.00 0.00 0.00 4.92
163 164 1.897398 GCGTTCTTGTACCGTGGCAG 61.897 60.000 0.00 0.00 0.00 4.85
164 165 0.319211 CGTTCTTGTACCGTGGCAGA 60.319 55.000 0.00 0.00 0.00 4.26
165 166 1.671850 CGTTCTTGTACCGTGGCAGAT 60.672 52.381 0.00 0.00 0.00 2.90
166 167 1.732259 GTTCTTGTACCGTGGCAGATG 59.268 52.381 0.00 0.00 0.00 2.90
167 168 0.973632 TCTTGTACCGTGGCAGATGT 59.026 50.000 0.00 0.00 0.00 3.06
168 169 1.078709 CTTGTACCGTGGCAGATGTG 58.921 55.000 0.00 0.00 0.00 3.21
169 170 0.321210 TTGTACCGTGGCAGATGTGG 60.321 55.000 0.00 0.00 0.00 4.17
170 171 1.188871 TGTACCGTGGCAGATGTGGA 61.189 55.000 0.00 0.00 0.00 4.02
171 172 0.178068 GTACCGTGGCAGATGTGGAT 59.822 55.000 0.00 0.00 0.00 3.41
172 173 0.908910 TACCGTGGCAGATGTGGATT 59.091 50.000 0.00 0.00 0.00 3.01
173 174 0.038166 ACCGTGGCAGATGTGGATTT 59.962 50.000 0.00 0.00 0.00 2.17
174 175 0.452987 CCGTGGCAGATGTGGATTTG 59.547 55.000 0.00 0.00 0.00 2.32
175 176 1.167851 CGTGGCAGATGTGGATTTGT 58.832 50.000 0.00 0.00 0.00 2.83
176 177 1.541147 CGTGGCAGATGTGGATTTGTT 59.459 47.619 0.00 0.00 0.00 2.83
177 178 2.030007 CGTGGCAGATGTGGATTTGTTT 60.030 45.455 0.00 0.00 0.00 2.83
178 179 3.319755 GTGGCAGATGTGGATTTGTTTG 58.680 45.455 0.00 0.00 0.00 2.93
179 180 3.005684 GTGGCAGATGTGGATTTGTTTGA 59.994 43.478 0.00 0.00 0.00 2.69
180 181 3.833650 TGGCAGATGTGGATTTGTTTGAT 59.166 39.130 0.00 0.00 0.00 2.57
181 182 5.015515 TGGCAGATGTGGATTTGTTTGATA 58.984 37.500 0.00 0.00 0.00 2.15
182 183 5.479724 TGGCAGATGTGGATTTGTTTGATAA 59.520 36.000 0.00 0.00 0.00 1.75
183 184 6.154877 TGGCAGATGTGGATTTGTTTGATAAT 59.845 34.615 0.00 0.00 0.00 1.28
184 185 7.341512 TGGCAGATGTGGATTTGTTTGATAATA 59.658 33.333 0.00 0.00 0.00 0.98
185 186 8.196771 GGCAGATGTGGATTTGTTTGATAATAA 58.803 33.333 0.00 0.00 0.00 1.40
186 187 9.241317 GCAGATGTGGATTTGTTTGATAATAAG 57.759 33.333 0.00 0.00 0.00 1.73
187 188 9.241317 CAGATGTGGATTTGTTTGATAATAAGC 57.759 33.333 0.00 0.00 0.00 3.09
188 189 9.193806 AGATGTGGATTTGTTTGATAATAAGCT 57.806 29.630 0.00 0.00 0.00 3.74
189 190 9.241317 GATGTGGATTTGTTTGATAATAAGCTG 57.759 33.333 0.00 0.00 0.00 4.24
190 191 8.347004 TGTGGATTTGTTTGATAATAAGCTGA 57.653 30.769 0.00 0.00 0.00 4.26
191 192 8.970020 TGTGGATTTGTTTGATAATAAGCTGAT 58.030 29.630 0.00 0.00 0.00 2.90
192 193 9.241317 GTGGATTTGTTTGATAATAAGCTGATG 57.759 33.333 0.00 0.00 0.00 3.07
193 194 8.415553 TGGATTTGTTTGATAATAAGCTGATGG 58.584 33.333 0.00 0.00 0.00 3.51
194 195 8.416329 GGATTTGTTTGATAATAAGCTGATGGT 58.584 33.333 0.00 0.00 0.00 3.55
195 196 9.807649 GATTTGTTTGATAATAAGCTGATGGTT 57.192 29.630 0.00 0.00 37.65 3.67
198 199 9.679661 TTGTTTGATAATAAGCTGATGGTTAGA 57.320 29.630 0.00 0.00 39.17 2.10
199 200 9.330063 TGTTTGATAATAAGCTGATGGTTAGAG 57.670 33.333 0.00 0.00 39.17 2.43
200 201 9.331282 GTTTGATAATAAGCTGATGGTTAGAGT 57.669 33.333 0.00 0.00 39.17 3.24
201 202 8.893219 TTGATAATAAGCTGATGGTTAGAGTG 57.107 34.615 0.00 0.00 39.17 3.51
202 203 7.445121 TGATAATAAGCTGATGGTTAGAGTGG 58.555 38.462 0.00 0.00 39.17 4.00
203 204 5.957771 AATAAGCTGATGGTTAGAGTGGA 57.042 39.130 0.00 0.00 39.17 4.02
204 205 3.902881 AAGCTGATGGTTAGAGTGGAG 57.097 47.619 0.00 0.00 31.46 3.86
205 206 1.484240 AGCTGATGGTTAGAGTGGAGC 59.516 52.381 0.00 0.00 0.00 4.70
206 207 1.208052 GCTGATGGTTAGAGTGGAGCA 59.792 52.381 0.00 0.00 0.00 4.26
207 208 2.898705 CTGATGGTTAGAGTGGAGCAC 58.101 52.381 0.00 0.00 34.10 4.40
208 209 1.204704 TGATGGTTAGAGTGGAGCACG 59.795 52.381 0.00 0.00 39.64 5.34
209 210 1.476891 GATGGTTAGAGTGGAGCACGA 59.523 52.381 0.00 0.00 39.64 4.35
210 211 1.557099 TGGTTAGAGTGGAGCACGAT 58.443 50.000 0.00 0.00 39.64 3.73
211 212 2.730382 TGGTTAGAGTGGAGCACGATA 58.270 47.619 0.00 0.00 39.64 2.92
212 213 3.093814 TGGTTAGAGTGGAGCACGATAA 58.906 45.455 0.00 0.00 39.64 1.75
213 214 3.512329 TGGTTAGAGTGGAGCACGATAAA 59.488 43.478 0.00 0.00 39.64 1.40
214 215 3.864003 GGTTAGAGTGGAGCACGATAAAC 59.136 47.826 0.00 0.00 39.64 2.01
215 216 2.674796 AGAGTGGAGCACGATAAACC 57.325 50.000 0.00 0.00 39.64 3.27
216 217 1.899814 AGAGTGGAGCACGATAAACCA 59.100 47.619 0.00 0.00 39.64 3.67
217 218 2.093973 AGAGTGGAGCACGATAAACCAG 60.094 50.000 0.00 0.00 39.64 4.00
218 219 1.899814 AGTGGAGCACGATAAACCAGA 59.100 47.619 0.00 0.00 39.64 3.86
219 220 2.501723 AGTGGAGCACGATAAACCAGAT 59.498 45.455 0.00 0.00 39.64 2.90
220 221 3.704566 AGTGGAGCACGATAAACCAGATA 59.295 43.478 0.00 0.00 39.64 1.98
221 222 4.161565 AGTGGAGCACGATAAACCAGATAA 59.838 41.667 0.00 0.00 39.64 1.75
222 223 4.873827 GTGGAGCACGATAAACCAGATAAA 59.126 41.667 0.00 0.00 0.00 1.40
223 224 4.873827 TGGAGCACGATAAACCAGATAAAC 59.126 41.667 0.00 0.00 0.00 2.01
224 225 4.272748 GGAGCACGATAAACCAGATAAACC 59.727 45.833 0.00 0.00 0.00 3.27
227 228 5.354234 AGCACGATAAACCAGATAAACCAAG 59.646 40.000 0.00 0.00 0.00 3.61
238 239 4.079253 AGATAAACCAAGCCAACGACAAT 58.921 39.130 0.00 0.00 0.00 2.71
260 261 0.813610 CGTTGCTCAGTCACCACCAA 60.814 55.000 0.00 0.00 0.00 3.67
262 263 0.836606 TTGCTCAGTCACCACCAAGA 59.163 50.000 0.00 0.00 0.00 3.02
281 282 1.070289 GAACGTCAACCCCAGAAGAGT 59.930 52.381 0.00 0.00 0.00 3.24
283 284 0.679505 CGTCAACCCCAGAAGAGTGA 59.320 55.000 0.00 0.00 0.00 3.41
285 286 2.675317 CGTCAACCCCAGAAGAGTGATC 60.675 54.545 0.00 0.00 0.00 2.92
300 301 2.027745 AGTGATCAGTGTACTTGGCCTG 60.028 50.000 3.32 0.00 0.00 4.85
301 302 1.977854 TGATCAGTGTACTTGGCCTGT 59.022 47.619 3.32 5.68 0.00 4.00
307 308 1.066358 GTGTACTTGGCCTGTCTACCC 60.066 57.143 3.32 0.00 0.00 3.69
355 363 1.078143 GCTCCAGCTCCGGTGAAAT 60.078 57.895 7.92 0.00 38.21 2.17
370 378 2.235402 GTGAAATAGACCTGGAACCGGA 59.765 50.000 9.46 0.00 0.00 5.14
371 379 3.112263 TGAAATAGACCTGGAACCGGAT 58.888 45.455 9.46 0.00 0.00 4.18
404 414 5.979517 CCCAAAGACAAACATCTTTCTTCAC 59.020 40.000 0.00 0.00 45.19 3.18
410 420 8.466086 AGACAAACATCTTTCTTCACAAAAAC 57.534 30.769 0.00 0.00 0.00 2.43
413 423 8.711457 ACAAACATCTTTCTTCACAAAAACTTG 58.289 29.630 0.00 0.00 0.00 3.16
457 472 0.529378 GCATGTGGCCTTTTCTCTGG 59.471 55.000 3.32 0.00 36.11 3.86
470 532 1.523258 CTCTGGATCTTGGCGGCAG 60.523 63.158 12.87 6.93 0.00 4.85
471 533 1.964608 CTCTGGATCTTGGCGGCAGA 61.965 60.000 12.87 12.43 0.00 4.26
472 534 1.523258 CTGGATCTTGGCGGCAGAG 60.523 63.158 12.87 12.77 0.00 3.35
473 535 1.964608 CTGGATCTTGGCGGCAGAGA 61.965 60.000 20.17 20.17 0.00 3.10
474 536 1.221840 GGATCTTGGCGGCAGAGAA 59.778 57.895 21.20 4.68 0.00 2.87
475 537 0.813210 GGATCTTGGCGGCAGAGAAG 60.813 60.000 21.20 13.38 0.00 2.85
476 538 0.176680 GATCTTGGCGGCAGAGAAGA 59.823 55.000 21.20 17.54 0.00 2.87
477 539 0.835941 ATCTTGGCGGCAGAGAAGAT 59.164 50.000 21.20 18.75 31.64 2.40
478 540 0.107993 TCTTGGCGGCAGAGAAGATG 60.108 55.000 12.87 0.00 0.00 2.90
479 541 1.712977 CTTGGCGGCAGAGAAGATGC 61.713 60.000 12.87 0.00 43.09 3.91
486 548 0.455005 GCAGAGAAGATGCCAAAGCC 59.545 55.000 0.00 0.00 37.73 4.35
487 549 0.731417 CAGAGAAGATGCCAAAGCCG 59.269 55.000 0.00 0.00 38.69 5.52
488 550 1.028868 AGAGAAGATGCCAAAGCCGC 61.029 55.000 0.00 0.00 38.69 6.53
489 551 1.997928 GAGAAGATGCCAAAGCCGCC 61.998 60.000 0.00 0.00 38.69 6.13
490 552 3.068729 GAAGATGCCAAAGCCGCCC 62.069 63.158 0.00 0.00 38.69 6.13
491 553 3.884704 AAGATGCCAAAGCCGCCCA 62.885 57.895 0.00 0.00 38.69 5.36
492 554 3.149648 GATGCCAAAGCCGCCCAT 61.150 61.111 0.00 0.00 38.69 4.00
493 555 3.435030 GATGCCAAAGCCGCCCATG 62.435 63.158 0.00 0.00 38.69 3.66
497 559 3.463585 CAAAGCCGCCCATGCCAT 61.464 61.111 0.00 0.00 0.00 4.40
498 560 3.463585 AAAGCCGCCCATGCCATG 61.464 61.111 0.00 0.00 0.00 3.66
511 573 2.747396 TGCCATGCATTTTGAAGGAC 57.253 45.000 0.00 0.00 31.71 3.85
512 574 1.969208 TGCCATGCATTTTGAAGGACA 59.031 42.857 0.00 0.00 31.71 4.02
513 575 2.288948 TGCCATGCATTTTGAAGGACAC 60.289 45.455 0.00 0.00 31.71 3.67
514 576 2.598589 CCATGCATTTTGAAGGACACG 58.401 47.619 0.00 0.00 0.00 4.49
515 577 1.987770 CATGCATTTTGAAGGACACGC 59.012 47.619 0.00 0.00 0.00 5.34
516 578 1.028130 TGCATTTTGAAGGACACGCA 58.972 45.000 0.00 0.00 0.00 5.24
548 610 0.330267 GGAAAAGGAATCCGGGGACA 59.670 55.000 0.00 0.00 0.00 4.02
549 611 1.682087 GGAAAAGGAATCCGGGGACAG 60.682 57.143 0.00 0.00 0.00 3.51
618 687 4.338539 GACACACGCGGAGGACGT 62.339 66.667 12.47 1.75 46.42 4.34
619 688 3.836176 GACACACGCGGAGGACGTT 62.836 63.158 12.47 0.00 42.96 3.99
678 770 2.825836 GTGAGCTGGCGGGGATTG 60.826 66.667 0.00 0.00 0.00 2.67
679 771 3.008517 TGAGCTGGCGGGGATTGA 61.009 61.111 0.00 0.00 0.00 2.57
680 772 2.377810 TGAGCTGGCGGGGATTGAT 61.378 57.895 0.00 0.00 0.00 2.57
681 773 1.152881 GAGCTGGCGGGGATTGATT 60.153 57.895 0.00 0.00 0.00 2.57
733 825 2.671963 GGGCCGAACCTGGTTGTC 60.672 66.667 18.42 4.77 39.10 3.18
787 881 1.151777 CCGCGTCATCCGTATTTGCT 61.152 55.000 4.92 0.00 39.32 3.91
789 883 1.332028 CGCGTCATCCGTATTTGCTTC 60.332 52.381 0.00 0.00 39.32 3.86
801 895 0.899717 TTTGCTTCCCAGTCCATGCC 60.900 55.000 0.00 0.00 0.00 4.40
810 904 2.042464 CCAGTCCATGCCTAGCTCTAA 58.958 52.381 0.00 0.00 0.00 2.10
811 905 2.636893 CCAGTCCATGCCTAGCTCTAAT 59.363 50.000 0.00 0.00 0.00 1.73
812 906 3.306641 CCAGTCCATGCCTAGCTCTAATC 60.307 52.174 0.00 0.00 0.00 1.75
813 907 3.577848 CAGTCCATGCCTAGCTCTAATCT 59.422 47.826 0.00 0.00 0.00 2.40
814 908 4.769488 CAGTCCATGCCTAGCTCTAATCTA 59.231 45.833 0.00 0.00 0.00 1.98
815 909 5.421693 CAGTCCATGCCTAGCTCTAATCTAT 59.578 44.000 0.00 0.00 0.00 1.98
816 910 6.605194 CAGTCCATGCCTAGCTCTAATCTATA 59.395 42.308 0.00 0.00 0.00 1.31
829 923 6.928492 GCTCTAATCTATAGCCATTCCTATGC 59.072 42.308 0.00 0.00 30.94 3.14
830 924 7.418368 GCTCTAATCTATAGCCATTCCTATGCA 60.418 40.741 0.00 0.00 30.94 3.96
834 928 7.876936 ATCTATAGCCATTCCTATGCATTTG 57.123 36.000 3.54 0.00 30.94 2.32
835 929 7.019656 TCTATAGCCATTCCTATGCATTTGA 57.980 36.000 3.54 0.00 30.94 2.69
838 932 3.887716 AGCCATTCCTATGCATTTGAGTC 59.112 43.478 3.54 0.00 0.00 3.36
839 933 3.633525 GCCATTCCTATGCATTTGAGTCA 59.366 43.478 3.54 0.00 0.00 3.41
840 934 4.261489 GCCATTCCTATGCATTTGAGTCAG 60.261 45.833 3.54 0.00 0.00 3.51
842 936 3.565764 TCCTATGCATTTGAGTCAGGG 57.434 47.619 3.54 0.00 0.00 4.45
843 937 1.952296 CCTATGCATTTGAGTCAGGGC 59.048 52.381 3.54 0.00 0.00 5.19
844 938 2.646930 CTATGCATTTGAGTCAGGGCA 58.353 47.619 3.54 14.99 35.54 5.36
845 939 1.927487 ATGCATTTGAGTCAGGGCAA 58.073 45.000 16.14 0.00 34.64 4.52
846 940 1.702182 TGCATTTGAGTCAGGGCAAA 58.298 45.000 11.53 0.00 38.25 3.68
855 2790 4.009675 TGAGTCAGGGCAAATGATTGTAC 58.990 43.478 0.00 0.00 38.85 2.90
863 2798 7.282224 TCAGGGCAAATGATTGTACTGTAATAC 59.718 37.037 0.00 0.00 40.32 1.89
866 2801 5.907391 GCAAATGATTGTACTGTAATACGCC 59.093 40.000 0.00 0.00 38.85 5.68
867 2802 6.457663 GCAAATGATTGTACTGTAATACGCCA 60.458 38.462 0.00 0.00 38.85 5.69
929 2864 4.377022 CGCGCCACATATATTAACCTCAAC 60.377 45.833 0.00 0.00 0.00 3.18
949 2884 2.224805 GATTCTCCCACCCAACCCCC 62.225 65.000 0.00 0.00 0.00 5.40
960 2895 1.449601 CAACCCCCTCGGAATCACG 60.450 63.158 0.00 0.00 34.64 4.35
1022 2957 0.321653 CCCCCAAAACTCCTCACTCG 60.322 60.000 0.00 0.00 0.00 4.18
1039 2974 4.247380 GCCTCATCCTGGCCCTCG 62.247 72.222 0.00 0.00 44.32 4.63
1040 2975 2.765807 CCTCATCCTGGCCCTCGT 60.766 66.667 0.00 0.00 0.00 4.18
1041 2976 2.801631 CCTCATCCTGGCCCTCGTC 61.802 68.421 0.00 0.00 0.00 4.20
1042 2977 3.144120 CTCATCCTGGCCCTCGTCG 62.144 68.421 0.00 0.00 0.00 5.12
1043 2978 4.899239 CATCCTGGCCCTCGTCGC 62.899 72.222 0.00 0.00 0.00 5.19
1411 3346 1.139256 TGCGAGGTTTGGTTGTCACTA 59.861 47.619 0.00 0.00 0.00 2.74
1418 3360 2.163818 TTGGTTGTCACTAGCTTCGG 57.836 50.000 0.00 0.00 0.00 4.30
1575 3520 2.299297 AGGTGGTGTTTCTACTCTTCCG 59.701 50.000 0.00 0.00 0.00 4.30
1599 3544 3.850273 CAGATACGTACGTTTGGAGTGAC 59.150 47.826 27.92 4.84 0.00 3.67
1617 3562 3.492011 GTGACTTTGCTGAAATGCTTTGG 59.508 43.478 0.00 0.00 0.00 3.28
1648 3593 1.684386 CGAAGGCAGCTCCATCCTCT 61.684 60.000 5.21 0.00 37.29 3.69
1653 3598 1.344114 GGCAGCTCCATCCTCTCTTAG 59.656 57.143 0.00 0.00 34.01 2.18
1655 3600 2.035832 GCAGCTCCATCCTCTCTTAGTC 59.964 54.545 0.00 0.00 0.00 2.59
1681 3626 5.073311 TCTTGTTAGTGAGTAGATGTGGC 57.927 43.478 0.00 0.00 0.00 5.01
1685 3630 0.457851 AGTGAGTAGATGTGGCGCTC 59.542 55.000 7.64 1.21 0.00 5.03
1711 3656 3.379682 GCAGATGCAGCATAATCGC 57.620 52.632 8.22 4.99 41.59 4.58
1736 3681 5.297776 AGAACACAGTTTCTGTTTGGATGAG 59.702 40.000 0.00 0.00 42.59 2.90
1742 3687 5.689068 CAGTTTCTGTTTGGATGAGCTTTTC 59.311 40.000 0.00 0.00 0.00 2.29
1768 3713 2.901291 TGGGATTTGGGCTAAAGCTTT 58.099 42.857 17.30 17.30 41.70 3.51
1778 3723 6.207691 TGGGCTAAAGCTTTCACATATTTC 57.792 37.500 16.57 0.00 41.70 2.17
1802 3747 1.601903 GTGTCGTGAAATGTGGAAGCA 59.398 47.619 0.00 0.00 0.00 3.91
1888 3838 7.081857 ACACTTAACCTTGGGTTATCTTACA 57.918 36.000 9.57 0.00 45.95 2.41
1914 3864 2.819595 CCACGGGGAATGCTCACG 60.820 66.667 0.00 0.00 35.59 4.35
1933 3883 6.019075 GCTCACGTTGCTATACATTACATCAA 60.019 38.462 3.33 0.00 0.00 2.57
1937 3887 8.122330 CACGTTGCTATACATTACATCAATTGT 58.878 33.333 5.13 0.00 42.62 2.71
1992 3949 6.703165 ACTTAACAACTACGGTTAGTTTCTGG 59.297 38.462 0.00 0.00 44.77 3.86
1993 3950 3.396560 ACAACTACGGTTAGTTTCTGGC 58.603 45.455 0.00 0.00 44.77 4.85
2002 3959 4.266976 CGGTTAGTTTCTGGCAATAGTACG 59.733 45.833 0.00 0.00 0.00 3.67
2010 3967 1.287425 GGCAATAGTACGGTGACAGC 58.713 55.000 0.00 0.00 0.00 4.40
2014 3971 3.428452 GCAATAGTACGGTGACAGCTGTA 60.428 47.826 21.73 5.60 0.00 2.74
2016 3973 2.941453 AGTACGGTGACAGCTGTATG 57.059 50.000 21.73 12.16 33.39 2.39
2017 3974 2.168496 AGTACGGTGACAGCTGTATGT 58.832 47.619 21.73 17.24 33.39 2.29
2029 3986 7.433719 GTGACAGCTGTATGTATCTCAACTTAG 59.566 40.741 21.73 0.00 32.25 2.18
2030 3987 7.122799 TGACAGCTGTATGTATCTCAACTTAGT 59.877 37.037 21.73 0.00 32.25 2.24
2031 3988 7.484975 ACAGCTGTATGTATCTCAACTTAGTC 58.515 38.462 20.16 0.00 0.00 2.59
2032 3989 6.920758 CAGCTGTATGTATCTCAACTTAGTCC 59.079 42.308 5.25 0.00 0.00 3.85
2033 3990 6.836527 AGCTGTATGTATCTCAACTTAGTCCT 59.163 38.462 0.00 0.00 0.00 3.85
2036 3993 9.877178 CTGTATGTATCTCAACTTAGTCCTTTT 57.123 33.333 0.00 0.00 0.00 2.27
2041 4001 6.723131 ATCTCAACTTAGTCCTTTTTACGC 57.277 37.500 0.00 0.00 0.00 4.42
2046 4006 5.919272 ACTTAGTCCTTTTTACGCAAGAC 57.081 39.130 0.00 0.00 43.62 3.01
2047 4007 5.362263 ACTTAGTCCTTTTTACGCAAGACA 58.638 37.500 0.00 0.00 43.62 3.41
2048 4008 5.995897 ACTTAGTCCTTTTTACGCAAGACAT 59.004 36.000 0.00 0.00 43.62 3.06
2051 4011 4.215613 AGTCCTTTTTACGCAAGACATTCC 59.784 41.667 0.00 0.00 43.62 3.01
2057 4017 1.238439 ACGCAAGACATTCCAACAGG 58.762 50.000 0.00 0.00 43.62 4.00
2061 4021 3.674997 GCAAGACATTCCAACAGGTCTA 58.325 45.455 0.00 0.00 39.55 2.59
2065 4025 6.543831 GCAAGACATTCCAACAGGTCTATTAT 59.456 38.462 0.00 0.00 39.55 1.28
2071 4031 8.166061 ACATTCCAACAGGTCTATTATATGCAT 58.834 33.333 3.79 3.79 0.00 3.96
2072 4032 7.984422 TTCCAACAGGTCTATTATATGCATG 57.016 36.000 10.16 0.00 0.00 4.06
2073 4033 7.315066 TCCAACAGGTCTATTATATGCATGA 57.685 36.000 10.16 0.00 0.00 3.07
2077 4037 9.060347 CAACAGGTCTATTATATGCATGAGTTT 57.940 33.333 10.16 0.00 0.00 2.66
2167 4152 2.807967 GCACAAGCATAGTGTCACTGAA 59.192 45.455 16.03 0.00 41.58 3.02
2183 4168 6.092670 TGTCACTGAAGCTATATTTTGTCTGC 59.907 38.462 0.00 0.00 0.00 4.26
2185 4170 4.884164 ACTGAAGCTATATTTTGTCTGCCC 59.116 41.667 0.00 0.00 0.00 5.36
2235 4220 1.134310 TCGCGGACTAGAGGTATGACA 60.134 52.381 6.13 0.00 0.00 3.58
2239 4224 3.553096 GCGGACTAGAGGTATGACAATGG 60.553 52.174 0.00 0.00 0.00 3.16
2258 4243 6.647895 ACAATGGTTTGCAGAATTTGAGATTC 59.352 34.615 5.76 0.00 36.22 2.52
2261 4246 5.009510 TGGTTTGCAGAATTTGAGATTCGAA 59.990 36.000 0.00 0.00 33.51 3.71
2263 4248 4.952262 TGCAGAATTTGAGATTCGAAGG 57.048 40.909 3.35 0.00 33.51 3.46
2269 4254 0.909623 TTGAGATTCGAAGGACCCCC 59.090 55.000 3.35 0.00 0.00 5.40
2270 4255 0.252513 TGAGATTCGAAGGACCCCCA 60.253 55.000 3.35 0.00 33.88 4.96
2275 4260 0.774908 TTCGAAGGACCCCCATTTGT 59.225 50.000 0.00 0.00 33.88 2.83
2282 4267 6.070424 TCGAAGGACCCCCATTTGTATATATC 60.070 42.308 0.00 0.00 33.88 1.63
2284 4269 7.125204 CGAAGGACCCCCATTTGTATATATCTA 59.875 40.741 0.00 0.00 33.88 1.98
2319 4306 3.314080 TGCTGCTTGTACACCTGTTTTAC 59.686 43.478 0.00 0.00 0.00 2.01
2327 4314 6.627395 TGTACACCTGTTTTACCATCTTTG 57.373 37.500 0.00 0.00 0.00 2.77
2331 4318 5.301805 ACACCTGTTTTACCATCTTTGAAGG 59.698 40.000 0.00 0.00 0.00 3.46
2345 4332 4.160626 TCTTTGAAGGGCTAGTTAGAGCTC 59.839 45.833 5.27 5.27 43.86 4.09
2358 4345 6.899393 AGTTAGAGCTCATAGAATCTCCTG 57.101 41.667 17.77 0.00 0.00 3.86
2362 4349 4.961730 AGAGCTCATAGAATCTCCTGTGTT 59.038 41.667 17.77 0.00 0.00 3.32
2363 4350 6.132658 AGAGCTCATAGAATCTCCTGTGTTA 58.867 40.000 17.77 0.00 0.00 2.41
2366 4353 6.609212 AGCTCATAGAATCTCCTGTGTTAGAA 59.391 38.462 0.00 0.00 0.00 2.10
2367 4354 7.289782 AGCTCATAGAATCTCCTGTGTTAGAAT 59.710 37.037 0.00 0.00 0.00 2.40
2392 4379 4.318332 TGGTCATAAGCACTCACTTGAAG 58.682 43.478 0.00 0.00 0.00 3.02
2395 4382 5.064452 GGTCATAAGCACTCACTTGAAGATG 59.936 44.000 0.00 0.00 0.00 2.90
2399 4386 2.157738 GCACTCACTTGAAGATGCCTT 58.842 47.619 0.00 0.00 34.81 4.35
2409 4396 4.038271 TGAAGATGCCTTTGGTCTGATT 57.962 40.909 0.00 0.00 31.62 2.57
2411 4398 4.219070 TGAAGATGCCTTTGGTCTGATTTG 59.781 41.667 0.00 0.00 31.62 2.32
2424 4411 5.705441 TGGTCTGATTTGTCCATTCACTAAC 59.295 40.000 0.00 0.00 0.00 2.34
2433 4420 4.941263 TGTCCATTCACTAACCAGCATTAC 59.059 41.667 0.00 0.00 0.00 1.89
2633 4621 2.609459 GACTGGGTAATCGACTGCAATG 59.391 50.000 0.00 0.00 0.00 2.82
2792 4783 4.038763 TGGGATCATGCTAGTAGTTTACCG 59.961 45.833 0.00 0.00 0.00 4.02
2808 4799 6.404708 AGTTTACCGGAATTACTTCTCCTTC 58.595 40.000 9.46 0.00 0.00 3.46
3087 5085 8.324306 ACTGATCTTCTCTAATTGATTTCACCA 58.676 33.333 0.00 0.00 0.00 4.17
3088 5086 9.339850 CTGATCTTCTCTAATTGATTTCACCAT 57.660 33.333 0.00 0.00 0.00 3.55
3160 5160 5.935789 CCAGTTGATGAAATTTCTTGGCATT 59.064 36.000 18.64 0.00 0.00 3.56
3333 5334 3.503363 TGCAAACAATTAGTCCTCTGCAG 59.497 43.478 7.63 7.63 33.87 4.41
3424 5425 2.033049 GTCATGCAGAATCATGGTGAGC 59.967 50.000 0.00 0.00 42.96 4.26
3517 5596 6.958767 ACCTAGTTACTCCTGTGCAAAATAT 58.041 36.000 0.00 0.00 0.00 1.28
3560 5642 9.289303 CTGTTGTTTTGTATATCATTTAGGTGC 57.711 33.333 0.00 0.00 0.00 5.01
3561 5643 8.797438 TGTTGTTTTGTATATCATTTAGGTGCA 58.203 29.630 0.00 0.00 0.00 4.57
3562 5644 9.632807 GTTGTTTTGTATATCATTTAGGTGCAA 57.367 29.630 0.00 0.00 0.00 4.08
3564 5646 9.853555 TGTTTTGTATATCATTTAGGTGCAAAG 57.146 29.630 0.00 0.00 0.00 2.77
3565 5647 9.855021 GTTTTGTATATCATTTAGGTGCAAAGT 57.145 29.630 0.00 0.00 0.00 2.66
3569 5651 9.853555 TGTATATCATTTAGGTGCAAAGTTTTG 57.146 29.630 0.00 0.28 41.03 2.44
3570 5652 9.855021 GTATATCATTTAGGTGCAAAGTTTTGT 57.145 29.630 6.48 0.00 40.24 2.83
3572 5654 9.777297 ATATCATTTAGGTGCAAAGTTTTGTTT 57.223 25.926 6.48 0.00 40.24 2.83
3574 5656 9.606631 ATCATTTAGGTGCAAAGTTTTGTTTAA 57.393 25.926 6.48 0.00 40.24 1.52
3575 5657 8.874816 TCATTTAGGTGCAAAGTTTTGTTTAAC 58.125 29.630 6.48 0.00 40.24 2.01
3576 5658 7.598189 TTTAGGTGCAAAGTTTTGTTTAACC 57.402 32.000 6.48 8.78 40.24 2.85
3738 5842 0.512952 CTGACTACGCAAGCAACCAC 59.487 55.000 0.00 0.00 45.62 4.16
3814 5919 2.611224 CCCATTTGTCTTTTGCTCTGCC 60.611 50.000 0.00 0.00 0.00 4.85
4012 6117 3.881688 CCTATTGAAGCAGAATGACCCAG 59.118 47.826 0.00 0.00 39.69 4.45
4013 6118 2.205022 TTGAAGCAGAATGACCCAGG 57.795 50.000 0.00 0.00 39.69 4.45
4089 6194 6.094881 CGACAGCTTCCCCTTGATTAAAATTA 59.905 38.462 0.00 0.00 0.00 1.40
4267 6378 1.805428 ATGTGAAACGGGCAAGGCAC 61.805 55.000 0.00 0.00 42.39 5.01
4324 6445 9.237187 TCACAATTCACATTATGCTTTACCTAA 57.763 29.630 0.00 0.00 0.00 2.69
4325 6446 9.289303 CACAATTCACATTATGCTTTACCTAAC 57.711 33.333 0.00 0.00 0.00 2.34
4358 6479 7.557719 CCTTCACAGGTGAGTATTAAAATGGAT 59.442 37.037 2.01 0.00 41.13 3.41
4682 6803 0.409092 AATGGCCCCACTGTCAATGA 59.591 50.000 0.00 0.00 0.00 2.57
4979 7101 8.598916 TGTACCAAATAGAAATACCTCAGTTCA 58.401 33.333 0.00 0.00 33.61 3.18
5113 7235 7.235079 TGTTTTTGGGTACAGGATGATAGAAA 58.765 34.615 0.00 0.00 39.69 2.52
5114 7236 7.393234 TGTTTTTGGGTACAGGATGATAGAAAG 59.607 37.037 0.00 0.00 39.69 2.62
5115 7237 6.884472 TTTGGGTACAGGATGATAGAAAGA 57.116 37.500 0.00 0.00 39.69 2.52
5116 7238 7.451731 TTTGGGTACAGGATGATAGAAAGAT 57.548 36.000 0.00 0.00 39.69 2.40
5117 7239 8.561536 TTTGGGTACAGGATGATAGAAAGATA 57.438 34.615 0.00 0.00 39.69 1.98
5118 7240 8.742125 TTGGGTACAGGATGATAGAAAGATAT 57.258 34.615 0.00 0.00 39.69 1.63
5119 7241 9.837681 TTGGGTACAGGATGATAGAAAGATATA 57.162 33.333 0.00 0.00 39.69 0.86
5150 7272 7.916914 GGTGTATACCAGTTCTACATGTTTT 57.083 36.000 2.30 0.00 46.71 2.43
5151 7273 8.331730 GGTGTATACCAGTTCTACATGTTTTT 57.668 34.615 2.30 0.00 46.71 1.94
5152 7274 8.234546 GGTGTATACCAGTTCTACATGTTTTTG 58.765 37.037 2.30 0.00 46.71 2.44
5153 7275 8.234546 GTGTATACCAGTTCTACATGTTTTTGG 58.765 37.037 2.30 8.21 0.00 3.28
5154 7276 6.834168 ATACCAGTTCTACATGTTTTTGGG 57.166 37.500 2.30 2.06 0.00 4.12
5155 7277 4.542697 ACCAGTTCTACATGTTTTTGGGT 58.457 39.130 2.30 2.74 0.00 4.51
5156 7278 5.697067 ACCAGTTCTACATGTTTTTGGGTA 58.303 37.500 2.30 0.00 0.00 3.69
5157 7279 5.533528 ACCAGTTCTACATGTTTTTGGGTAC 59.466 40.000 2.30 0.00 0.00 3.34
5158 7280 5.533154 CCAGTTCTACATGTTTTTGGGTACA 59.467 40.000 2.30 0.00 0.00 2.90
5159 7281 6.293955 CCAGTTCTACATGTTTTTGGGTACAG 60.294 42.308 2.30 0.00 0.00 2.74
5160 7282 5.768164 AGTTCTACATGTTTTTGGGTACAGG 59.232 40.000 2.30 0.00 32.71 4.00
5161 7283 5.570205 TCTACATGTTTTTGGGTACAGGA 57.430 39.130 2.30 0.00 31.11 3.86
5162 7284 6.134535 TCTACATGTTTTTGGGTACAGGAT 57.865 37.500 2.30 0.00 31.11 3.24
5163 7285 5.943416 TCTACATGTTTTTGGGTACAGGATG 59.057 40.000 2.30 0.00 46.00 3.51
5164 7286 4.735369 ACATGTTTTTGGGTACAGGATGA 58.265 39.130 0.00 0.00 39.69 2.92
5165 7287 5.332743 ACATGTTTTTGGGTACAGGATGAT 58.667 37.500 0.00 0.00 39.69 2.45
5166 7288 6.489603 ACATGTTTTTGGGTACAGGATGATA 58.510 36.000 0.00 0.00 39.69 2.15
5167 7289 6.603201 ACATGTTTTTGGGTACAGGATGATAG 59.397 38.462 0.00 0.00 39.69 2.08
5168 7290 6.381498 TGTTTTTGGGTACAGGATGATAGA 57.619 37.500 0.00 0.00 39.69 1.98
5169 7291 6.785076 TGTTTTTGGGTACAGGATGATAGAA 58.215 36.000 0.00 0.00 39.69 2.10
5371 7493 6.952083 GTGTTAGACGGTCATTTCGTTTAATC 59.048 38.462 11.27 0.00 41.22 1.75
5679 7801 9.219603 CTGGTAATTCATAAGTCTGTTTTGAGA 57.780 33.333 0.00 0.00 0.00 3.27
5906 8028 1.920574 CACTTGCAGGAATAGACGACG 59.079 52.381 1.40 0.00 0.00 5.12
5986 8108 1.142060 ACCTCCGATGTCCAACAAACA 59.858 47.619 0.00 0.00 0.00 2.83
6099 8221 2.320367 GGAGCTTATGTGTCGCTATCG 58.680 52.381 0.00 0.00 33.47 2.92
6142 8264 1.771255 AGTCAGTTGGAGGCCATATCC 59.229 52.381 5.01 3.51 37.35 2.59
6278 8400 1.302993 GGCCCTGGCTCGTGTTTTA 60.303 57.895 8.29 0.00 41.60 1.52
6280 8402 0.733150 GCCCTGGCTCGTGTTTTATC 59.267 55.000 0.00 0.00 38.26 1.75
6287 8409 3.998341 TGGCTCGTGTTTTATCCAGTAAC 59.002 43.478 0.00 0.00 0.00 2.50
6301 8423 4.002982 TCCAGTAACACAGATCATGCAAC 58.997 43.478 0.00 0.00 0.00 4.17
6325 8447 3.893200 CGTAAGATACACATGAGGGGGTA 59.107 47.826 0.00 0.00 43.02 3.69
6345 8467 4.865761 GCCGCGCCTCGATACACA 62.866 66.667 0.00 0.00 41.67 3.72
6347 8469 2.202557 CGCGCCTCGATACACACA 60.203 61.111 0.00 0.00 41.67 3.72
6392 8514 3.688185 TGTCGTCACCTCTACTGTATCAC 59.312 47.826 0.00 0.00 0.00 3.06
6393 8515 3.940221 GTCGTCACCTCTACTGTATCACT 59.060 47.826 0.00 0.00 0.00 3.41
6421 8818 8.437360 TGTAAGTTCACTTGCATCCATATTAG 57.563 34.615 6.39 0.00 42.25 1.73
6430 8827 4.847198 TGCATCCATATTAGCCCATACAG 58.153 43.478 0.00 0.00 0.00 2.74
6492 8890 3.057104 CACCCCGAAACTCCAATAAAACC 60.057 47.826 0.00 0.00 0.00 3.27
6493 8891 3.158676 CCCCGAAACTCCAATAAAACCA 58.841 45.455 0.00 0.00 0.00 3.67
6494 8892 3.057104 CCCCGAAACTCCAATAAAACCAC 60.057 47.826 0.00 0.00 0.00 4.16
6501 8899 0.901827 CCAATAAAACCACCCCAGCC 59.098 55.000 0.00 0.00 0.00 4.85
6508 8906 4.748144 CCACCCCAGCCTTGCTCC 62.748 72.222 0.00 0.00 36.40 4.70
6531 8929 1.302271 GACCGGAGAAAAGGCGGTT 60.302 57.895 9.46 0.00 32.66 4.44
6548 8946 2.004733 GGTTGCCGATGTAACAGTACC 58.995 52.381 0.00 0.00 38.66 3.34
6572 8970 1.438710 CGCGCCTTTTCAACAGTCG 60.439 57.895 0.00 0.00 0.00 4.18
6623 9021 1.265236 TTTGCAACTGGCCAATAGGG 58.735 50.000 7.01 0.00 43.89 3.53
6677 9077 4.352009 AGAGGTGATGTGAATCTCTCAGT 58.648 43.478 0.00 0.00 33.60 3.41
6678 9078 4.160065 AGAGGTGATGTGAATCTCTCAGTG 59.840 45.833 0.00 0.00 33.60 3.66
6679 9079 3.837146 AGGTGATGTGAATCTCTCAGTGT 59.163 43.478 0.00 0.00 33.60 3.55
6680 9080 3.931468 GGTGATGTGAATCTCTCAGTGTG 59.069 47.826 0.00 0.00 33.60 3.82
6696 9096 5.620206 TCAGTGTGTGTGGATATTTCAACT 58.380 37.500 0.00 0.00 0.00 3.16
6697 9097 6.764379 TCAGTGTGTGTGGATATTTCAACTA 58.236 36.000 0.00 0.00 0.00 2.24
6709 9109 8.150945 TGGATATTTCAACTATCTCTGCTTACC 58.849 37.037 0.00 0.00 0.00 2.85
6755 9155 2.086869 CCCCACATCACTGTCATTCAC 58.913 52.381 0.00 0.00 31.62 3.18
6866 9266 1.060937 GCGATCCACGACAACATGC 59.939 57.895 0.00 0.00 45.77 4.06
6893 9293 1.836166 TCCCTTGCTTGGAGATGAGAG 59.164 52.381 0.00 0.00 0.00 3.20
6901 9301 4.157289 TGCTTGGAGATGAGAGCAAAATTC 59.843 41.667 0.00 0.00 41.72 2.17
6922 9322 3.000815 GGCCATTTATCGCCGAGAA 57.999 52.632 0.00 0.00 34.94 2.87
6923 9323 0.868406 GGCCATTTATCGCCGAGAAG 59.132 55.000 0.00 0.00 34.94 2.85
6924 9324 0.868406 GCCATTTATCGCCGAGAAGG 59.132 55.000 0.00 0.00 44.97 3.46
6925 9325 1.810412 GCCATTTATCGCCGAGAAGGT 60.810 52.381 0.00 0.00 43.70 3.50
6987 9387 2.806608 TGTTACAGGTCGTTGTCCTC 57.193 50.000 0.00 0.00 32.37 3.71
6995 9395 0.736325 GTCGTTGTCCTCCCATGTCG 60.736 60.000 0.00 0.00 0.00 4.35
7025 9425 2.173356 TGGCCATATATATCTGCTGCCC 59.827 50.000 0.00 3.66 36.82 5.36
7028 9428 4.530875 GCCATATATATCTGCTGCCCTTT 58.469 43.478 0.00 0.00 0.00 3.11
7099 9499 8.326529 GGTATATACTGCCATAAATAACTGGGT 58.673 37.037 12.54 0.00 32.90 4.51
7177 9577 2.497675 TCTTGGACTACTGATGCTGACC 59.502 50.000 0.00 0.00 0.00 4.02
7188 9588 3.411446 TGATGCTGACCGAAGAATTTGT 58.589 40.909 0.00 0.00 0.00 2.83
7191 9591 5.471797 TGATGCTGACCGAAGAATTTGTTTA 59.528 36.000 0.00 0.00 0.00 2.01
7239 9642 7.815549 TCTCTGATCATGACGTCTATCTACTAC 59.184 40.741 17.92 0.64 0.00 2.73
7240 9643 7.672240 TCTGATCATGACGTCTATCTACTACT 58.328 38.462 17.92 0.00 0.00 2.57
7241 9644 7.815549 TCTGATCATGACGTCTATCTACTACTC 59.184 40.741 17.92 1.17 0.00 2.59
7242 9645 6.874664 TGATCATGACGTCTATCTACTACTCC 59.125 42.308 17.92 0.00 0.00 3.85
7243 9646 5.549347 TCATGACGTCTATCTACTACTCCC 58.451 45.833 17.92 0.00 0.00 4.30
7244 9647 5.307456 TCATGACGTCTATCTACTACTCCCT 59.693 44.000 17.92 0.00 0.00 4.20
7245 9648 5.212532 TGACGTCTATCTACTACTCCCTC 57.787 47.826 17.92 0.00 0.00 4.30
7246 9649 4.900652 TGACGTCTATCTACTACTCCCTCT 59.099 45.833 17.92 0.00 0.00 3.69
7247 9650 5.217978 ACGTCTATCTACTACTCCCTCTG 57.782 47.826 0.00 0.00 0.00 3.35
7248 9651 4.655186 ACGTCTATCTACTACTCCCTCTGT 59.345 45.833 0.00 0.00 0.00 3.41
7249 9652 5.221501 ACGTCTATCTACTACTCCCTCTGTC 60.222 48.000 0.00 0.00 0.00 3.51
7250 9653 5.554070 GTCTATCTACTACTCCCTCTGTCC 58.446 50.000 0.00 0.00 0.00 4.02
7251 9654 3.887916 ATCTACTACTCCCTCTGTCCC 57.112 52.381 0.00 0.00 0.00 4.46
7252 9655 2.570098 TCTACTACTCCCTCTGTCCCA 58.430 52.381 0.00 0.00 0.00 4.37
7253 9656 2.924302 TCTACTACTCCCTCTGTCCCAA 59.076 50.000 0.00 0.00 0.00 4.12
7254 9657 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
7255 9658 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
7256 9659 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
7257 9660 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
7258 9661 5.098663 ACTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
7259 9662 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
7260 9663 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
7261 9664 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
7262 9665 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
7263 9666 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
7264 9667 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
7265 9668 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
7266 9669 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
7267 9670 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
7268 9671 5.997746 TCTGTCCCAAAATAAGTGTCTCAAG 59.002 40.000 0.00 0.00 0.00 3.02
7269 9672 4.518970 TGTCCCAAAATAAGTGTCTCAAGC 59.481 41.667 0.00 0.00 0.00 4.01
7270 9673 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
7271 9674 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
7272 9675 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
7273 9676 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
7274 9677 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
7275 9678 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
7276 9679 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
7277 9680 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
7278 9681 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
7279 9682 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
7280 9683 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
7281 9684 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
7282 9685 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
7283 9686 7.723324 AGTGTCTCAAGCTTAGTACAACTTTA 58.277 34.615 0.00 0.00 0.00 1.85
7284 9687 7.652507 AGTGTCTCAAGCTTAGTACAACTTTAC 59.347 37.037 0.00 0.00 0.00 2.01
7285 9688 7.437267 GTGTCTCAAGCTTAGTACAACTTTACA 59.563 37.037 0.00 0.00 0.00 2.41
7286 9689 7.437267 TGTCTCAAGCTTAGTACAACTTTACAC 59.563 37.037 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.961277 GGGGCGAGCGGTTATCATG 60.961 63.158 0.00 0.00 0.00 3.07
1 2 2.426023 GGGGCGAGCGGTTATCAT 59.574 61.111 0.00 0.00 0.00 2.45
2 3 3.857038 GGGGGCGAGCGGTTATCA 61.857 66.667 0.00 0.00 0.00 2.15
30 31 4.135153 CTGACGGAGACAGGGGCG 62.135 72.222 0.00 0.00 45.84 6.13
36 37 1.405933 CCATGCAATCTGACGGAGACA 60.406 52.381 0.00 0.00 31.75 3.41
37 38 1.293924 CCATGCAATCTGACGGAGAC 58.706 55.000 0.00 0.00 31.75 3.36
38 39 0.462581 GCCATGCAATCTGACGGAGA 60.463 55.000 0.00 0.00 34.25 3.71
39 40 0.463295 AGCCATGCAATCTGACGGAG 60.463 55.000 0.00 0.00 0.00 4.63
40 41 0.035152 AAGCCATGCAATCTGACGGA 60.035 50.000 0.00 0.00 0.00 4.69
41 42 1.667236 TAAGCCATGCAATCTGACGG 58.333 50.000 0.00 0.00 0.00 4.79
42 43 3.976793 AATAAGCCATGCAATCTGACG 57.023 42.857 0.00 0.00 0.00 4.35
43 44 5.756195 TGTAATAAGCCATGCAATCTGAC 57.244 39.130 0.00 0.00 0.00 3.51
44 45 6.301486 AGATGTAATAAGCCATGCAATCTGA 58.699 36.000 0.00 0.00 0.00 3.27
45 46 6.570672 AGATGTAATAAGCCATGCAATCTG 57.429 37.500 0.00 0.00 0.00 2.90
46 47 7.148120 GCATAGATGTAATAAGCCATGCAATCT 60.148 37.037 0.00 0.00 37.92 2.40
47 48 6.971184 GCATAGATGTAATAAGCCATGCAATC 59.029 38.462 0.00 0.00 37.92 2.67
48 49 6.662234 AGCATAGATGTAATAAGCCATGCAAT 59.338 34.615 0.00 0.00 39.91 3.56
49 50 6.005823 AGCATAGATGTAATAAGCCATGCAA 58.994 36.000 0.00 0.00 39.91 4.08
50 51 5.563592 AGCATAGATGTAATAAGCCATGCA 58.436 37.500 6.06 0.00 39.91 3.96
51 52 7.798596 ATAGCATAGATGTAATAAGCCATGC 57.201 36.000 0.00 0.00 38.20 4.06
115 116 9.684448 TGTTGAAAATACGAGCAATTTATCAAA 57.316 25.926 0.00 0.00 32.16 2.69
116 117 9.853555 ATGTTGAAAATACGAGCAATTTATCAA 57.146 25.926 0.00 0.00 0.00 2.57
117 118 9.853555 AATGTTGAAAATACGAGCAATTTATCA 57.146 25.926 0.00 0.00 0.00 2.15
119 120 8.594687 GCAATGTTGAAAATACGAGCAATTTAT 58.405 29.630 0.00 0.00 0.00 1.40
120 121 7.201308 CGCAATGTTGAAAATACGAGCAATTTA 60.201 33.333 0.00 0.00 0.00 1.40
121 122 6.399880 CGCAATGTTGAAAATACGAGCAATTT 60.400 34.615 0.00 0.00 0.00 1.82
122 123 5.060816 CGCAATGTTGAAAATACGAGCAATT 59.939 36.000 0.00 0.00 0.00 2.32
123 124 4.558470 CGCAATGTTGAAAATACGAGCAAT 59.442 37.500 0.00 0.00 0.00 3.56
124 125 3.911365 CGCAATGTTGAAAATACGAGCAA 59.089 39.130 0.00 0.00 0.00 3.91
125 126 3.058570 ACGCAATGTTGAAAATACGAGCA 60.059 39.130 0.00 0.00 0.00 4.26
126 127 3.488489 ACGCAATGTTGAAAATACGAGC 58.512 40.909 0.00 0.00 0.00 5.03
127 128 5.382303 AGAACGCAATGTTGAAAATACGAG 58.618 37.500 0.00 0.00 42.09 4.18
128 129 5.351233 AGAACGCAATGTTGAAAATACGA 57.649 34.783 0.00 0.00 42.09 3.43
129 130 5.398122 ACAAGAACGCAATGTTGAAAATACG 59.602 36.000 3.07 0.00 42.09 3.06
130 131 6.747659 ACAAGAACGCAATGTTGAAAATAC 57.252 33.333 3.07 0.00 42.09 1.89
131 132 6.858993 GGTACAAGAACGCAATGTTGAAAATA 59.141 34.615 0.00 0.00 42.09 1.40
132 133 5.689961 GGTACAAGAACGCAATGTTGAAAAT 59.310 36.000 0.00 0.00 42.09 1.82
133 134 5.038033 GGTACAAGAACGCAATGTTGAAAA 58.962 37.500 0.00 0.00 42.09 2.29
134 135 4.602995 GGTACAAGAACGCAATGTTGAAA 58.397 39.130 0.00 0.00 42.09 2.69
135 136 3.303461 CGGTACAAGAACGCAATGTTGAA 60.303 43.478 0.00 0.00 42.09 2.69
136 137 2.222213 CGGTACAAGAACGCAATGTTGA 59.778 45.455 0.00 0.00 42.09 3.18
137 138 2.032377 ACGGTACAAGAACGCAATGTTG 60.032 45.455 0.00 0.00 42.09 3.33
138 139 2.032377 CACGGTACAAGAACGCAATGTT 60.032 45.455 0.00 0.00 45.61 2.71
139 140 1.529438 CACGGTACAAGAACGCAATGT 59.471 47.619 0.00 0.00 0.00 2.71
140 141 1.136085 CCACGGTACAAGAACGCAATG 60.136 52.381 0.00 0.00 0.00 2.82
141 142 1.153353 CCACGGTACAAGAACGCAAT 58.847 50.000 0.00 0.00 0.00 3.56
142 143 1.500512 GCCACGGTACAAGAACGCAA 61.501 55.000 0.00 0.00 0.00 4.85
143 144 1.957186 GCCACGGTACAAGAACGCA 60.957 57.895 0.00 0.00 0.00 5.24
144 145 1.897398 CTGCCACGGTACAAGAACGC 61.897 60.000 0.00 0.00 0.00 4.84
145 146 0.319211 TCTGCCACGGTACAAGAACG 60.319 55.000 0.00 0.00 0.00 3.95
146 147 1.732259 CATCTGCCACGGTACAAGAAC 59.268 52.381 0.00 0.00 0.00 3.01
147 148 1.346395 ACATCTGCCACGGTACAAGAA 59.654 47.619 0.00 0.00 0.00 2.52
148 149 0.973632 ACATCTGCCACGGTACAAGA 59.026 50.000 0.00 0.00 0.00 3.02
149 150 1.078709 CACATCTGCCACGGTACAAG 58.921 55.000 0.00 0.00 0.00 3.16
150 151 0.321210 CCACATCTGCCACGGTACAA 60.321 55.000 0.00 0.00 0.00 2.41
151 152 1.188871 TCCACATCTGCCACGGTACA 61.189 55.000 0.00 0.00 0.00 2.90
152 153 0.178068 ATCCACATCTGCCACGGTAC 59.822 55.000 0.00 0.00 0.00 3.34
153 154 0.908910 AATCCACATCTGCCACGGTA 59.091 50.000 0.00 0.00 0.00 4.02
154 155 0.038166 AAATCCACATCTGCCACGGT 59.962 50.000 0.00 0.00 0.00 4.83
155 156 0.452987 CAAATCCACATCTGCCACGG 59.547 55.000 0.00 0.00 0.00 4.94
156 157 1.167851 ACAAATCCACATCTGCCACG 58.832 50.000 0.00 0.00 0.00 4.94
157 158 3.005684 TCAAACAAATCCACATCTGCCAC 59.994 43.478 0.00 0.00 0.00 5.01
158 159 3.229293 TCAAACAAATCCACATCTGCCA 58.771 40.909 0.00 0.00 0.00 4.92
159 160 3.940209 TCAAACAAATCCACATCTGCC 57.060 42.857 0.00 0.00 0.00 4.85
160 161 9.241317 CTTATTATCAAACAAATCCACATCTGC 57.759 33.333 0.00 0.00 0.00 4.26
161 162 9.241317 GCTTATTATCAAACAAATCCACATCTG 57.759 33.333 0.00 0.00 0.00 2.90
162 163 9.193806 AGCTTATTATCAAACAAATCCACATCT 57.806 29.630 0.00 0.00 0.00 2.90
163 164 9.241317 CAGCTTATTATCAAACAAATCCACATC 57.759 33.333 0.00 0.00 0.00 3.06
164 165 8.970020 TCAGCTTATTATCAAACAAATCCACAT 58.030 29.630 0.00 0.00 0.00 3.21
165 166 8.347004 TCAGCTTATTATCAAACAAATCCACA 57.653 30.769 0.00 0.00 0.00 4.17
166 167 9.241317 CATCAGCTTATTATCAAACAAATCCAC 57.759 33.333 0.00 0.00 0.00 4.02
167 168 8.415553 CCATCAGCTTATTATCAAACAAATCCA 58.584 33.333 0.00 0.00 0.00 3.41
168 169 8.416329 ACCATCAGCTTATTATCAAACAAATCC 58.584 33.333 0.00 0.00 0.00 3.01
169 170 9.807649 AACCATCAGCTTATTATCAAACAAATC 57.192 29.630 0.00 0.00 0.00 2.17
172 173 9.679661 TCTAACCATCAGCTTATTATCAAACAA 57.320 29.630 0.00 0.00 0.00 2.83
173 174 9.330063 CTCTAACCATCAGCTTATTATCAAACA 57.670 33.333 0.00 0.00 0.00 2.83
174 175 9.331282 ACTCTAACCATCAGCTTATTATCAAAC 57.669 33.333 0.00 0.00 0.00 2.93
175 176 9.330063 CACTCTAACCATCAGCTTATTATCAAA 57.670 33.333 0.00 0.00 0.00 2.69
176 177 7.933577 CCACTCTAACCATCAGCTTATTATCAA 59.066 37.037 0.00 0.00 0.00 2.57
177 178 7.290014 TCCACTCTAACCATCAGCTTATTATCA 59.710 37.037 0.00 0.00 0.00 2.15
178 179 7.671302 TCCACTCTAACCATCAGCTTATTATC 58.329 38.462 0.00 0.00 0.00 1.75
179 180 7.618019 TCCACTCTAACCATCAGCTTATTAT 57.382 36.000 0.00 0.00 0.00 1.28
180 181 6.463049 GCTCCACTCTAACCATCAGCTTATTA 60.463 42.308 0.00 0.00 0.00 0.98
181 182 5.686124 GCTCCACTCTAACCATCAGCTTATT 60.686 44.000 0.00 0.00 0.00 1.40
182 183 4.202305 GCTCCACTCTAACCATCAGCTTAT 60.202 45.833 0.00 0.00 0.00 1.73
183 184 3.133003 GCTCCACTCTAACCATCAGCTTA 59.867 47.826 0.00 0.00 0.00 3.09
184 185 2.093235 GCTCCACTCTAACCATCAGCTT 60.093 50.000 0.00 0.00 0.00 3.74
185 186 1.484240 GCTCCACTCTAACCATCAGCT 59.516 52.381 0.00 0.00 0.00 4.24
186 187 1.208052 TGCTCCACTCTAACCATCAGC 59.792 52.381 0.00 0.00 0.00 4.26
187 188 2.736719 CGTGCTCCACTCTAACCATCAG 60.737 54.545 0.00 0.00 31.34 2.90
188 189 1.204704 CGTGCTCCACTCTAACCATCA 59.795 52.381 0.00 0.00 31.34 3.07
189 190 1.476891 TCGTGCTCCACTCTAACCATC 59.523 52.381 0.00 0.00 31.34 3.51
190 191 1.557099 TCGTGCTCCACTCTAACCAT 58.443 50.000 0.00 0.00 31.34 3.55
191 192 1.557099 ATCGTGCTCCACTCTAACCA 58.443 50.000 0.00 0.00 31.34 3.67
192 193 3.795623 TTATCGTGCTCCACTCTAACC 57.204 47.619 0.00 0.00 31.34 2.85
193 194 3.864003 GGTTTATCGTGCTCCACTCTAAC 59.136 47.826 0.00 0.00 31.34 2.34
194 195 3.512329 TGGTTTATCGTGCTCCACTCTAA 59.488 43.478 0.00 0.00 31.34 2.10
195 196 3.093814 TGGTTTATCGTGCTCCACTCTA 58.906 45.455 0.00 0.00 31.34 2.43
196 197 1.899814 TGGTTTATCGTGCTCCACTCT 59.100 47.619 0.00 0.00 31.34 3.24
197 198 2.094182 TCTGGTTTATCGTGCTCCACTC 60.094 50.000 0.00 0.00 31.34 3.51
198 199 1.899814 TCTGGTTTATCGTGCTCCACT 59.100 47.619 0.00 0.00 31.34 4.00
199 200 2.380084 TCTGGTTTATCGTGCTCCAC 57.620 50.000 0.00 0.00 0.00 4.02
200 201 4.746535 TTATCTGGTTTATCGTGCTCCA 57.253 40.909 0.00 0.00 0.00 3.86
201 202 4.272748 GGTTTATCTGGTTTATCGTGCTCC 59.727 45.833 0.00 0.00 0.00 4.70
202 203 4.873827 TGGTTTATCTGGTTTATCGTGCTC 59.126 41.667 0.00 0.00 0.00 4.26
203 204 4.839121 TGGTTTATCTGGTTTATCGTGCT 58.161 39.130 0.00 0.00 0.00 4.40
204 205 5.554822 TTGGTTTATCTGGTTTATCGTGC 57.445 39.130 0.00 0.00 0.00 5.34
205 206 5.448632 GGCTTGGTTTATCTGGTTTATCGTG 60.449 44.000 0.00 0.00 0.00 4.35
206 207 4.638865 GGCTTGGTTTATCTGGTTTATCGT 59.361 41.667 0.00 0.00 0.00 3.73
207 208 4.638421 TGGCTTGGTTTATCTGGTTTATCG 59.362 41.667 0.00 0.00 0.00 2.92
208 209 6.330278 GTTGGCTTGGTTTATCTGGTTTATC 58.670 40.000 0.00 0.00 0.00 1.75
209 210 5.105917 CGTTGGCTTGGTTTATCTGGTTTAT 60.106 40.000 0.00 0.00 0.00 1.40
210 211 4.216687 CGTTGGCTTGGTTTATCTGGTTTA 59.783 41.667 0.00 0.00 0.00 2.01
211 212 3.005367 CGTTGGCTTGGTTTATCTGGTTT 59.995 43.478 0.00 0.00 0.00 3.27
212 213 2.556622 CGTTGGCTTGGTTTATCTGGTT 59.443 45.455 0.00 0.00 0.00 3.67
213 214 2.159382 CGTTGGCTTGGTTTATCTGGT 58.841 47.619 0.00 0.00 0.00 4.00
214 215 2.161609 GTCGTTGGCTTGGTTTATCTGG 59.838 50.000 0.00 0.00 0.00 3.86
215 216 2.811431 TGTCGTTGGCTTGGTTTATCTG 59.189 45.455 0.00 0.00 0.00 2.90
216 217 3.134574 TGTCGTTGGCTTGGTTTATCT 57.865 42.857 0.00 0.00 0.00 1.98
217 218 3.907894 TTGTCGTTGGCTTGGTTTATC 57.092 42.857 0.00 0.00 0.00 1.75
218 219 3.613910 GCATTGTCGTTGGCTTGGTTTAT 60.614 43.478 0.00 0.00 0.00 1.40
219 220 2.287909 GCATTGTCGTTGGCTTGGTTTA 60.288 45.455 0.00 0.00 0.00 2.01
220 221 1.537990 GCATTGTCGTTGGCTTGGTTT 60.538 47.619 0.00 0.00 0.00 3.27
221 222 0.031994 GCATTGTCGTTGGCTTGGTT 59.968 50.000 0.00 0.00 0.00 3.67
222 223 1.659794 GCATTGTCGTTGGCTTGGT 59.340 52.632 0.00 0.00 0.00 3.67
223 224 1.080569 GGCATTGTCGTTGGCTTGG 60.081 57.895 0.00 0.00 36.76 3.61
224 225 1.442520 CGGCATTGTCGTTGGCTTG 60.443 57.895 1.71 0.00 37.50 4.01
238 239 2.280797 GGTGACTGAGCAACGGCA 60.281 61.111 0.00 0.00 44.61 5.69
260 261 1.344763 CTCTTCTGGGGTTGACGTTCT 59.655 52.381 0.00 0.00 0.00 3.01
262 263 1.129058 ACTCTTCTGGGGTTGACGTT 58.871 50.000 0.00 0.00 0.00 3.99
281 282 1.977854 ACAGGCCAAGTACACTGATCA 59.022 47.619 5.01 0.00 35.08 2.92
283 284 2.260822 AGACAGGCCAAGTACACTGAT 58.739 47.619 5.01 0.00 35.08 2.90
285 286 2.353803 GGTAGACAGGCCAAGTACACTG 60.354 54.545 5.01 0.00 37.01 3.66
300 301 1.229400 TGGGGTGAGGTGGGTAGAC 60.229 63.158 0.00 0.00 0.00 2.59
301 302 1.080354 CTGGGGTGAGGTGGGTAGA 59.920 63.158 0.00 0.00 0.00 2.59
307 308 0.035458 GTGAAGACTGGGGTGAGGTG 59.965 60.000 0.00 0.00 0.00 4.00
355 363 0.616395 TGCATCCGGTTCCAGGTCTA 60.616 55.000 0.00 0.00 0.00 2.59
370 378 1.607467 GTCTTTGGGGCAGGTGCAT 60.607 57.895 4.01 0.00 44.36 3.96
371 379 2.203480 GTCTTTGGGGCAGGTGCA 60.203 61.111 4.01 0.00 44.36 4.57
404 414 7.647715 AGATCACGGTGAATTTACAAGTTTTTG 59.352 33.333 15.72 0.00 40.24 2.44
410 420 6.073276 TGTTGAGATCACGGTGAATTTACAAG 60.073 38.462 15.72 0.00 0.00 3.16
413 423 5.408604 AGTGTTGAGATCACGGTGAATTTAC 59.591 40.000 15.72 10.14 40.28 2.01
457 472 0.176680 TCTTCTCTGCCGCCAAGATC 59.823 55.000 0.00 0.00 0.00 2.75
470 532 1.431036 GCGGCTTTGGCATCTTCTC 59.569 57.895 0.00 0.00 40.87 2.87
471 533 2.048603 GGCGGCTTTGGCATCTTCT 61.049 57.895 0.00 0.00 40.87 2.85
472 534 2.491621 GGCGGCTTTGGCATCTTC 59.508 61.111 0.00 0.00 40.87 2.87
473 535 3.070576 GGGCGGCTTTGGCATCTT 61.071 61.111 9.56 0.00 40.87 2.40
474 536 3.667217 ATGGGCGGCTTTGGCATCT 62.667 57.895 9.56 0.00 40.87 2.90
475 537 3.149648 ATGGGCGGCTTTGGCATC 61.150 61.111 9.56 0.00 40.87 3.91
476 538 3.463585 CATGGGCGGCTTTGGCAT 61.464 61.111 9.56 0.00 40.87 4.40
480 542 3.463585 ATGGCATGGGCGGCTTTG 61.464 61.111 9.56 8.14 42.47 2.77
481 543 3.463585 CATGGCATGGGCGGCTTT 61.464 61.111 19.80 0.00 42.47 3.51
492 554 1.969208 TGTCCTTCAAAATGCATGGCA 59.031 42.857 0.00 0.00 44.86 4.92
493 555 2.340337 GTGTCCTTCAAAATGCATGGC 58.660 47.619 0.00 0.00 0.00 4.40
494 556 2.598589 CGTGTCCTTCAAAATGCATGG 58.401 47.619 0.00 0.00 0.00 3.66
495 557 1.987770 GCGTGTCCTTCAAAATGCATG 59.012 47.619 0.00 0.00 0.00 4.06
496 558 1.612950 TGCGTGTCCTTCAAAATGCAT 59.387 42.857 0.00 0.00 0.00 3.96
497 559 1.028130 TGCGTGTCCTTCAAAATGCA 58.972 45.000 0.00 0.00 0.00 3.96
498 560 1.408422 GTGCGTGTCCTTCAAAATGC 58.592 50.000 0.00 0.00 0.00 3.56
499 561 1.262950 TCGTGCGTGTCCTTCAAAATG 59.737 47.619 0.00 0.00 0.00 2.32
500 562 1.531149 CTCGTGCGTGTCCTTCAAAAT 59.469 47.619 0.00 0.00 0.00 1.82
501 563 0.934496 CTCGTGCGTGTCCTTCAAAA 59.066 50.000 0.00 0.00 0.00 2.44
502 564 0.103390 TCTCGTGCGTGTCCTTCAAA 59.897 50.000 0.00 0.00 0.00 2.69
503 565 0.318699 CTCTCGTGCGTGTCCTTCAA 60.319 55.000 0.00 0.00 0.00 2.69
504 566 1.285950 CTCTCGTGCGTGTCCTTCA 59.714 57.895 0.00 0.00 0.00 3.02
505 567 2.089349 GCTCTCGTGCGTGTCCTTC 61.089 63.158 0.00 0.00 0.00 3.46
506 568 2.049063 GCTCTCGTGCGTGTCCTT 60.049 61.111 0.00 0.00 0.00 3.36
507 569 3.295273 TGCTCTCGTGCGTGTCCT 61.295 61.111 0.00 0.00 35.36 3.85
508 570 3.106407 GTGCTCTCGTGCGTGTCC 61.106 66.667 0.00 0.00 35.36 4.02
509 571 1.949133 TTGTGCTCTCGTGCGTGTC 60.949 57.895 0.00 0.00 35.36 3.67
510 572 2.106131 TTGTGCTCTCGTGCGTGT 59.894 55.556 0.00 0.00 35.36 4.49
511 573 2.546321 GTTGTGCTCTCGTGCGTG 59.454 61.111 0.00 0.00 35.36 5.34
512 574 3.030308 CGTTGTGCTCTCGTGCGT 61.030 61.111 0.00 0.00 35.36 5.24
513 575 3.767230 CCGTTGTGCTCTCGTGCG 61.767 66.667 0.00 0.00 35.36 5.34
514 576 1.495584 TTTCCGTTGTGCTCTCGTGC 61.496 55.000 0.00 0.00 0.00 5.34
515 577 0.934496 TTTTCCGTTGTGCTCTCGTG 59.066 50.000 0.00 0.00 0.00 4.35
516 578 1.217882 CTTTTCCGTTGTGCTCTCGT 58.782 50.000 0.00 0.00 0.00 4.18
548 610 4.385405 GCGTCAGTGGCCAGCTCT 62.385 66.667 5.11 0.00 0.00 4.09
568 635 2.515290 TCATCGGCCAGCAGCATG 60.515 61.111 2.24 0.00 46.50 4.06
601 670 3.836176 AACGTCCTCCGCGTGTGTC 62.836 63.158 4.92 0.00 42.10 3.67
602 671 3.908081 AACGTCCTCCGCGTGTGT 61.908 61.111 4.92 0.00 42.10 3.72
678 770 3.763671 CCGGGGGCAGCAATAATC 58.236 61.111 0.00 0.00 0.00 1.75
787 881 0.621571 AGCTAGGCATGGACTGGGAA 60.622 55.000 0.00 0.00 0.00 3.97
789 883 1.053264 AGAGCTAGGCATGGACTGGG 61.053 60.000 0.00 0.00 0.00 4.45
801 895 7.896383 AGGAATGGCTATAGATTAGAGCTAG 57.104 40.000 3.21 0.00 42.40 3.42
810 904 7.636579 TCAAATGCATAGGAATGGCTATAGAT 58.363 34.615 3.21 0.00 33.38 1.98
811 905 7.019656 TCAAATGCATAGGAATGGCTATAGA 57.980 36.000 3.21 0.00 33.38 1.98
812 906 6.883217 ACTCAAATGCATAGGAATGGCTATAG 59.117 38.462 0.00 0.00 33.38 1.31
813 907 6.782986 ACTCAAATGCATAGGAATGGCTATA 58.217 36.000 0.00 0.00 33.38 1.31
814 908 5.638133 ACTCAAATGCATAGGAATGGCTAT 58.362 37.500 0.00 0.00 33.38 2.97
815 909 5.052693 ACTCAAATGCATAGGAATGGCTA 57.947 39.130 0.00 0.00 33.38 3.93
816 910 3.887716 GACTCAAATGCATAGGAATGGCT 59.112 43.478 0.00 0.00 33.38 4.75
830 924 4.529377 ACAATCATTTGCCCTGACTCAAAT 59.471 37.500 0.00 0.00 41.88 2.32
834 928 4.095483 CAGTACAATCATTTGCCCTGACTC 59.905 45.833 0.00 0.00 36.61 3.36
835 929 4.012374 CAGTACAATCATTTGCCCTGACT 58.988 43.478 0.00 0.00 36.61 3.41
838 932 5.895636 TTACAGTACAATCATTTGCCCTG 57.104 39.130 0.00 0.00 38.69 4.45
839 933 6.260050 CGTATTACAGTACAATCATTTGCCCT 59.740 38.462 0.00 0.00 36.22 5.19
840 934 6.427150 CGTATTACAGTACAATCATTTGCCC 58.573 40.000 0.00 0.00 36.22 5.36
842 936 5.907391 GGCGTATTACAGTACAATCATTTGC 59.093 40.000 0.00 0.00 36.22 3.68
843 937 7.010697 TGGCGTATTACAGTACAATCATTTG 57.989 36.000 0.00 0.00 38.86 2.32
844 938 7.618502 TTGGCGTATTACAGTACAATCATTT 57.381 32.000 0.00 0.00 0.00 2.32
845 939 7.335924 AGTTTGGCGTATTACAGTACAATCATT 59.664 33.333 0.00 0.00 0.00 2.57
846 940 6.821665 AGTTTGGCGTATTACAGTACAATCAT 59.178 34.615 0.00 0.00 0.00 2.45
850 2785 7.818446 TCAATAGTTTGGCGTATTACAGTACAA 59.182 33.333 0.00 0.00 33.44 2.41
855 2790 6.238374 CCCTTCAATAGTTTGGCGTATTACAG 60.238 42.308 0.00 0.00 33.44 2.74
863 2798 0.455815 GCCCCTTCAATAGTTTGGCG 59.544 55.000 0.00 0.00 33.44 5.69
866 2801 5.261216 TCCTTTAGCCCCTTCAATAGTTTG 58.739 41.667 0.00 0.00 0.00 2.93
867 2802 5.530176 TCCTTTAGCCCCTTCAATAGTTT 57.470 39.130 0.00 0.00 0.00 2.66
929 2864 1.077716 GGGTTGGGTGGGAGAATCG 60.078 63.158 0.00 0.00 34.37 3.34
949 2884 3.000925 CGGGTTTAAATCGTGATTCCGAG 59.999 47.826 11.94 0.00 40.68 4.63
960 2895 5.993441 TCGGGATAATTCTCGGGTTTAAATC 59.007 40.000 0.00 0.00 46.17 2.17
1411 3346 1.683441 CCCTTACCCAACCGAAGCT 59.317 57.895 0.00 0.00 0.00 3.74
1418 3360 2.818274 CTCGCGCCCTTACCCAAC 60.818 66.667 0.00 0.00 0.00 3.77
1567 3512 1.674962 GTACGTATCTGGCGGAAGAGT 59.325 52.381 0.00 3.15 0.00 3.24
1575 3520 2.190981 CTCCAAACGTACGTATCTGGC 58.809 52.381 27.10 0.00 0.00 4.85
1599 3544 3.006110 TCTCCCAAAGCATTTCAGCAAAG 59.994 43.478 0.00 0.00 35.03 2.77
1617 3562 1.399791 CTGCCTTCGCTGAAATTCTCC 59.600 52.381 0.00 0.00 36.08 3.71
1648 3593 7.584122 ACTCACTAACAAGAAGTGACTAAGA 57.416 36.000 1.92 0.00 46.38 2.10
1653 3598 7.327275 CACATCTACTCACTAACAAGAAGTGAC 59.673 40.741 1.92 0.00 46.38 3.67
1655 3600 6.587990 CCACATCTACTCACTAACAAGAAGTG 59.412 42.308 0.00 0.00 44.66 3.16
1681 3626 1.883544 CATCTGCAGCAGAGGAGCG 60.884 63.158 29.38 11.81 43.80 5.03
1736 3681 2.352715 CCAAATCCCAACGGAGAAAAGC 60.353 50.000 0.00 0.00 43.12 3.51
1742 3687 0.254747 TAGCCCAAATCCCAACGGAG 59.745 55.000 0.00 0.00 43.12 4.63
1778 3723 2.209273 TCCACATTTCACGACACACAG 58.791 47.619 0.00 0.00 0.00 3.66
1802 3747 4.097892 GTCTGTCAAATGACCCAAGTGTTT 59.902 41.667 10.83 0.00 44.15 2.83
1888 3838 2.713531 ATTCCCCGTGGCAGTTGCTT 62.714 55.000 3.88 0.00 41.70 3.91
1933 3883 7.125391 ACCATTGACCATCACCTAAATACAAT 58.875 34.615 0.00 0.00 0.00 2.71
1937 3887 6.376864 CACAACCATTGACCATCACCTAAATA 59.623 38.462 0.00 0.00 0.00 1.40
1943 3900 1.545582 CCACAACCATTGACCATCACC 59.454 52.381 0.00 0.00 0.00 4.02
1979 3936 4.266976 CGTACTATTGCCAGAAACTAACCG 59.733 45.833 0.00 0.00 0.00 4.44
1992 3949 1.927174 CAGCTGTCACCGTACTATTGC 59.073 52.381 5.25 0.00 0.00 3.56
1993 3950 3.232213 ACAGCTGTCACCGTACTATTG 57.768 47.619 15.25 0.00 0.00 1.90
2002 3959 4.655762 TGAGATACATACAGCTGTCACC 57.344 45.455 25.56 7.97 0.00 4.02
2010 3967 9.877178 AAAAGGACTAAGTTGAGATACATACAG 57.123 33.333 0.00 0.00 0.00 2.74
2014 3971 9.367444 CGTAAAAAGGACTAAGTTGAGATACAT 57.633 33.333 0.00 0.00 0.00 2.29
2016 3973 7.330208 TGCGTAAAAAGGACTAAGTTGAGATAC 59.670 37.037 0.00 0.00 0.00 2.24
2017 3974 7.380536 TGCGTAAAAAGGACTAAGTTGAGATA 58.619 34.615 0.00 0.00 0.00 1.98
2029 3986 4.023536 TGGAATGTCTTGCGTAAAAAGGAC 60.024 41.667 0.00 0.00 0.00 3.85
2030 3987 4.138290 TGGAATGTCTTGCGTAAAAAGGA 58.862 39.130 0.00 0.00 0.00 3.36
2031 3988 4.497473 TGGAATGTCTTGCGTAAAAAGG 57.503 40.909 0.00 0.00 0.00 3.11
2032 3989 5.277825 TGTTGGAATGTCTTGCGTAAAAAG 58.722 37.500 0.00 0.00 0.00 2.27
2033 3990 5.250235 TGTTGGAATGTCTTGCGTAAAAA 57.750 34.783 0.00 0.00 0.00 1.94
2036 3993 2.811431 CCTGTTGGAATGTCTTGCGTAA 59.189 45.455 0.00 0.00 34.57 3.18
2041 4001 9.784531 ATATAATAGACCTGTTGGAATGTCTTG 57.215 33.333 0.00 0.00 38.85 3.02
2046 4006 7.984422 TGCATATAATAGACCTGTTGGAATG 57.016 36.000 0.00 0.00 37.04 2.67
2047 4007 8.385491 TCATGCATATAATAGACCTGTTGGAAT 58.615 33.333 0.00 0.00 37.04 3.01
2048 4008 7.744733 TCATGCATATAATAGACCTGTTGGAA 58.255 34.615 0.00 0.00 37.04 3.53
2051 4011 8.613060 AACTCATGCATATAATAGACCTGTTG 57.387 34.615 0.00 0.00 0.00 3.33
2065 4025 9.941325 ATTTCCAATTGTTAAAACTCATGCATA 57.059 25.926 0.00 0.00 0.00 3.14
2079 4039 8.482128 TCCTGACAAAACTAATTTCCAATTGTT 58.518 29.630 4.43 0.00 30.37 2.83
2087 4047 9.803315 AAGTTTCTTCCTGACAAAACTAATTTC 57.197 29.630 3.30 0.00 40.16 2.17
2167 4152 4.860022 ACAAGGGCAGACAAAATATAGCT 58.140 39.130 0.00 0.00 0.00 3.32
2183 4168 8.768397 TCCATATATTGTATTAGCCTACAAGGG 58.232 37.037 9.23 6.48 42.97 3.95
2185 4170 9.319143 GCTCCATATATTGTATTAGCCTACAAG 57.681 37.037 9.23 0.00 42.97 3.16
2235 4220 5.865552 CGAATCTCAAATTCTGCAAACCATT 59.134 36.000 0.00 0.00 0.00 3.16
2239 4224 5.570589 CCTTCGAATCTCAAATTCTGCAAAC 59.429 40.000 0.00 0.00 0.00 2.93
2258 4243 2.729028 ATACAAATGGGGGTCCTTCG 57.271 50.000 0.00 0.00 0.00 3.79
2261 4246 7.912204 ACATAGATATATACAAATGGGGGTCCT 59.088 37.037 0.00 0.00 0.00 3.85
2282 4267 4.013267 AGCAGCAGGGCTATTAACATAG 57.987 45.455 0.00 0.00 43.70 2.23
2284 4269 2.954318 CAAGCAGCAGGGCTATTAACAT 59.046 45.455 0.00 0.00 45.07 2.71
2293 4279 2.335712 GGTGTACAAGCAGCAGGGC 61.336 63.158 0.00 0.00 36.91 5.19
2300 4286 3.887352 TGGTAAAACAGGTGTACAAGCA 58.113 40.909 0.00 0.00 0.00 3.91
2301 4287 4.760204 AGATGGTAAAACAGGTGTACAAGC 59.240 41.667 0.00 0.00 0.00 4.01
2319 4306 5.359194 TCTAACTAGCCCTTCAAAGATGG 57.641 43.478 0.00 0.00 0.00 3.51
2327 4314 5.074115 TCTATGAGCTCTAACTAGCCCTTC 58.926 45.833 16.19 0.00 43.86 3.46
2331 4318 6.127730 GGAGATTCTATGAGCTCTAACTAGCC 60.128 46.154 16.19 2.83 43.86 3.93
2358 4345 8.438676 AGTGCTTATGACCAATATTCTAACAC 57.561 34.615 0.00 0.00 0.00 3.32
2362 4349 8.023021 AGTGAGTGCTTATGACCAATATTCTA 57.977 34.615 0.00 0.00 0.00 2.10
2363 4350 6.893583 AGTGAGTGCTTATGACCAATATTCT 58.106 36.000 0.00 0.00 0.00 2.40
2366 4353 6.653020 TCAAGTGAGTGCTTATGACCAATAT 58.347 36.000 0.00 0.00 0.00 1.28
2367 4354 6.048732 TCAAGTGAGTGCTTATGACCAATA 57.951 37.500 0.00 0.00 0.00 1.90
2372 4359 5.447010 GCATCTTCAAGTGAGTGCTTATGAC 60.447 44.000 7.66 0.00 0.00 3.06
2392 4379 3.119352 GGACAAATCAGACCAAAGGCATC 60.119 47.826 0.00 0.00 0.00 3.91
2395 4382 2.238521 TGGACAAATCAGACCAAAGGC 58.761 47.619 0.00 0.00 30.56 4.35
2399 4386 4.728772 AGTGAATGGACAAATCAGACCAA 58.271 39.130 0.00 0.00 36.93 3.67
2409 4396 3.500448 TGCTGGTTAGTGAATGGACAA 57.500 42.857 0.00 0.00 0.00 3.18
2411 4398 4.034048 CGTAATGCTGGTTAGTGAATGGAC 59.966 45.833 0.00 0.00 0.00 4.02
2424 4411 1.318576 GGGGGAAATCGTAATGCTGG 58.681 55.000 0.00 0.00 0.00 4.85
2603 4591 5.775701 AGTCGATTACCCAGTCATATTAGCT 59.224 40.000 0.00 0.00 0.00 3.32
2657 4648 4.764172 CAATAGAAGTGACAGAGGGAAGG 58.236 47.826 0.00 0.00 0.00 3.46
2792 4783 3.451540 ACGGAGGAAGGAGAAGTAATTCC 59.548 47.826 0.00 0.00 41.29 3.01
2808 4799 4.113354 GTTTGAGTATGAAGCTACGGAGG 58.887 47.826 0.00 0.00 0.00 4.30
3087 5085 3.928005 AGCATGGTGATGAGAAGTCAT 57.072 42.857 0.00 0.00 46.75 3.06
3088 5086 4.824479 TTAGCATGGTGATGAGAAGTCA 57.176 40.909 7.89 0.00 37.02 3.41
3282 5283 2.414994 AGGAACATGTGCTGATGAGG 57.585 50.000 3.21 0.00 0.00 3.86
3424 5425 3.930336 TGTCATGAAGTCTACAGGCAAG 58.070 45.455 0.00 0.00 0.00 4.01
3555 5637 5.153950 TGGTTAAACAAAACTTTGCACCT 57.846 34.783 0.00 0.00 41.79 4.00
3556 5638 5.864628 TTGGTTAAACAAAACTTTGCACC 57.135 34.783 2.71 4.78 41.79 5.01
3575 5657 1.067516 CTGGAGCAACAACCTGTTTGG 59.932 52.381 0.00 0.00 38.77 3.28
3576 5658 1.067516 CCTGGAGCAACAACCTGTTTG 59.932 52.381 0.00 0.00 38.77 2.93
4048 6153 3.334691 CTGTCGTTTAAATCCAGGCTGA 58.665 45.455 17.94 2.24 0.00 4.26
4057 6162 3.434940 AGGGGAAGCTGTCGTTTAAAT 57.565 42.857 0.00 0.00 0.00 1.40
4060 6165 1.695242 TCAAGGGGAAGCTGTCGTTTA 59.305 47.619 0.00 0.00 0.00 2.01
4089 6194 0.107165 GCCAGGAGGAATTACGCCTT 60.107 55.000 10.77 0.00 35.44 4.35
4181 6290 8.519492 AACATTCAAGTTCAAACATAAATCGG 57.481 30.769 0.00 0.00 0.00 4.18
4243 6353 2.393764 CTTGCCCGTTTCACATTTCAC 58.606 47.619 0.00 0.00 0.00 3.18
4244 6354 1.339610 CCTTGCCCGTTTCACATTTCA 59.660 47.619 0.00 0.00 0.00 2.69
4245 6355 1.934849 GCCTTGCCCGTTTCACATTTC 60.935 52.381 0.00 0.00 0.00 2.17
4267 6378 7.218228 TGCTGAAGGGCATAAATGTATAATG 57.782 36.000 0.00 0.00 37.29 1.90
4324 6445 0.469917 CACCTGTGAAGGACCACTGT 59.530 55.000 0.00 0.00 37.89 3.55
4325 6446 0.758734 TCACCTGTGAAGGACCACTG 59.241 55.000 0.00 0.00 36.53 3.66
4667 6788 4.819783 TGTCATTGACAGTGGGGC 57.180 55.556 15.41 0.00 37.67 5.80
4682 6803 2.092429 ACACACAATGTCCCAGAACTGT 60.092 45.455 1.18 0.00 36.54 3.55
4979 7101 6.664428 AAGGCACATACAACCTACAAATTT 57.336 33.333 0.00 0.00 32.08 1.82
5012 7134 4.782019 TTCTCCCACACAAATAACATGC 57.218 40.909 0.00 0.00 0.00 4.06
5119 7241 9.878737 ATGTAGAACTGGTATACACCTACTTAT 57.121 33.333 1.77 0.00 45.98 1.73
5120 7242 9.128404 CATGTAGAACTGGTATACACCTACTTA 57.872 37.037 1.77 0.00 45.98 2.24
5121 7243 7.618512 ACATGTAGAACTGGTATACACCTACTT 59.381 37.037 1.77 4.29 45.98 2.24
5122 7244 7.124052 ACATGTAGAACTGGTATACACCTACT 58.876 38.462 1.77 1.39 45.98 2.57
5123 7245 7.344095 ACATGTAGAACTGGTATACACCTAC 57.656 40.000 1.77 8.33 45.98 3.18
5124 7246 7.966339 AACATGTAGAACTGGTATACACCTA 57.034 36.000 1.77 0.00 45.98 3.08
5125 7247 6.869206 AACATGTAGAACTGGTATACACCT 57.131 37.500 1.77 0.00 45.98 4.00
5126 7248 7.916914 AAAACATGTAGAACTGGTATACACC 57.083 36.000 1.77 0.00 46.00 4.16
5127 7249 8.234546 CCAAAAACATGTAGAACTGGTATACAC 58.765 37.037 1.77 0.00 32.58 2.90
5128 7250 7.392113 CCCAAAAACATGTAGAACTGGTATACA 59.608 37.037 2.29 2.29 34.17 2.29
5129 7251 7.392393 ACCCAAAAACATGTAGAACTGGTATAC 59.608 37.037 0.00 0.00 0.00 1.47
5130 7252 7.463431 ACCCAAAAACATGTAGAACTGGTATA 58.537 34.615 0.00 0.00 0.00 1.47
5131 7253 6.311735 ACCCAAAAACATGTAGAACTGGTAT 58.688 36.000 0.00 0.00 0.00 2.73
5132 7254 5.697067 ACCCAAAAACATGTAGAACTGGTA 58.303 37.500 0.00 0.00 0.00 3.25
5133 7255 4.542697 ACCCAAAAACATGTAGAACTGGT 58.457 39.130 0.00 0.00 0.00 4.00
5134 7256 5.533154 TGTACCCAAAAACATGTAGAACTGG 59.467 40.000 0.00 2.16 0.00 4.00
5135 7257 6.293955 CCTGTACCCAAAAACATGTAGAACTG 60.294 42.308 0.00 0.00 0.00 3.16
5136 7258 5.768164 CCTGTACCCAAAAACATGTAGAACT 59.232 40.000 0.00 0.00 0.00 3.01
5137 7259 5.766174 TCCTGTACCCAAAAACATGTAGAAC 59.234 40.000 0.00 0.00 0.00 3.01
5138 7260 5.942961 TCCTGTACCCAAAAACATGTAGAA 58.057 37.500 0.00 0.00 0.00 2.10
5139 7261 5.570205 TCCTGTACCCAAAAACATGTAGA 57.430 39.130 0.00 0.00 0.00 2.59
5140 7262 5.943416 TCATCCTGTACCCAAAAACATGTAG 59.057 40.000 0.00 0.00 0.00 2.74
5141 7263 5.882040 TCATCCTGTACCCAAAAACATGTA 58.118 37.500 0.00 0.00 0.00 2.29
5142 7264 4.735369 TCATCCTGTACCCAAAAACATGT 58.265 39.130 0.00 0.00 0.00 3.21
5143 7265 5.920193 ATCATCCTGTACCCAAAAACATG 57.080 39.130 0.00 0.00 0.00 3.21
5144 7266 6.969043 TCTATCATCCTGTACCCAAAAACAT 58.031 36.000 0.00 0.00 0.00 2.71
5145 7267 6.381498 TCTATCATCCTGTACCCAAAAACA 57.619 37.500 0.00 0.00 0.00 2.83
5146 7268 7.556275 TCATTCTATCATCCTGTACCCAAAAAC 59.444 37.037 0.00 0.00 0.00 2.43
5147 7269 7.638444 TCATTCTATCATCCTGTACCCAAAAA 58.362 34.615 0.00 0.00 0.00 1.94
5148 7270 7.206789 TCATTCTATCATCCTGTACCCAAAA 57.793 36.000 0.00 0.00 0.00 2.44
5149 7271 6.823286 TCATTCTATCATCCTGTACCCAAA 57.177 37.500 0.00 0.00 0.00 3.28
5150 7272 8.685257 ATATCATTCTATCATCCTGTACCCAA 57.315 34.615 0.00 0.00 0.00 4.12
5151 7273 9.958125 ATATATCATTCTATCATCCTGTACCCA 57.042 33.333 0.00 0.00 0.00 4.51
5188 7310 3.585862 TCAGTAAGACGGCAGAACATTC 58.414 45.455 0.00 0.00 0.00 2.67
5371 7493 0.745845 GGCATAGGTGGTGCTCAGTG 60.746 60.000 0.00 0.00 42.16 3.66
5986 8108 0.816825 CAGCTGCTCGTGGCCATATT 60.817 55.000 9.72 0.00 40.92 1.28
6078 8200 2.320367 GATAGCGACACATAAGCTCCG 58.680 52.381 0.00 0.00 41.88 4.63
6099 8221 4.511454 TCCACATACGCTCTGCATTATTTC 59.489 41.667 0.00 0.00 0.00 2.17
6278 8400 4.492494 TGCATGATCTGTGTTACTGGAT 57.508 40.909 0.00 0.00 0.00 3.41
6280 8402 3.181517 CGTTGCATGATCTGTGTTACTGG 60.182 47.826 0.00 0.00 0.00 4.00
6287 8409 0.998669 TACGCGTTGCATGATCTGTG 59.001 50.000 20.78 0.00 0.00 3.66
6301 8423 2.394708 CCCTCATGTGTATCTTACGCG 58.605 52.381 3.53 3.53 41.91 6.01
6345 8467 0.989212 TTGGTACAGTGTGGGGGTGT 60.989 55.000 5.88 0.00 42.39 4.16
6347 8469 0.927767 TTTTGGTACAGTGTGGGGGT 59.072 50.000 5.88 0.00 42.39 4.95
6373 8495 4.636648 AGAAGTGATACAGTAGAGGTGACG 59.363 45.833 0.00 0.00 0.00 4.35
6379 8501 8.731605 TGAACTTACAGAAGTGATACAGTAGAG 58.268 37.037 0.00 0.00 45.50 2.43
6389 8511 4.765273 TGCAAGTGAACTTACAGAAGTGA 58.235 39.130 0.00 0.00 45.50 3.41
6392 8514 4.756642 TGGATGCAAGTGAACTTACAGAAG 59.243 41.667 0.00 0.00 33.21 2.85
6393 8515 4.713553 TGGATGCAAGTGAACTTACAGAA 58.286 39.130 0.00 0.00 33.21 3.02
6421 8818 1.755179 ATTGTCACAGCTGTATGGGC 58.245 50.000 21.20 9.87 0.00 5.36
6430 8827 3.255642 TCAAGGGCTTTTATTGTCACAGC 59.744 43.478 0.00 0.00 0.00 4.40
6492 8890 3.292481 ATGGAGCAAGGCTGGGGTG 62.292 63.158 0.00 0.00 39.88 4.61
6493 8891 2.943265 ATGGAGCAAGGCTGGGGT 60.943 61.111 0.00 0.00 39.88 4.95
6494 8892 2.123982 GATGGAGCAAGGCTGGGG 60.124 66.667 0.00 0.00 39.88 4.96
6501 8899 2.202932 CCGGTCGGATGGAGCAAG 60.203 66.667 2.83 0.00 43.39 4.01
6508 8906 1.090052 GCCTTTTCTCCGGTCGGATG 61.090 60.000 12.79 7.41 44.24 3.51
6531 8929 3.527533 GAATGGTACTGTTACATCGGCA 58.472 45.455 0.00 0.00 0.00 5.69
6546 8944 3.322706 GAAAAGGCGCGCGAATGGT 62.323 57.895 37.18 15.29 0.00 3.55
6547 8945 2.576847 GAAAAGGCGCGCGAATGG 60.577 61.111 37.18 3.91 0.00 3.16
6548 8946 1.441849 TTGAAAAGGCGCGCGAATG 60.442 52.632 37.18 4.39 0.00 2.67
6636 9034 4.762251 CCTCTCTTTTACCAGTTCAAAGGG 59.238 45.833 0.00 0.00 30.35 3.95
6677 9077 7.765819 CAGAGATAGTTGAAATATCCACACACA 59.234 37.037 8.82 0.00 31.22 3.72
6678 9078 7.254590 GCAGAGATAGTTGAAATATCCACACAC 60.255 40.741 8.82 0.00 31.22 3.82
6679 9079 6.763135 GCAGAGATAGTTGAAATATCCACACA 59.237 38.462 8.82 0.00 31.22 3.72
6680 9080 6.989169 AGCAGAGATAGTTGAAATATCCACAC 59.011 38.462 8.82 0.00 31.22 3.82
6696 9096 4.286707 TGCAAGTAGGGTAAGCAGAGATA 58.713 43.478 0.00 0.00 0.00 1.98
6697 9097 3.107601 TGCAAGTAGGGTAAGCAGAGAT 58.892 45.455 0.00 0.00 0.00 2.75
6709 9109 6.980397 GTCCAAAATATCCAAATGCAAGTAGG 59.020 38.462 0.00 0.00 0.00 3.18
6755 9155 2.562738 GACAAATCCAGGAAAAGGGTGG 59.437 50.000 0.00 0.00 0.00 4.61
6815 9215 1.809869 CGATCCTGAACCAGCGAGA 59.190 57.895 0.00 0.00 0.00 4.04
6866 9266 3.121030 CAAGCAAGGGACGGCGAG 61.121 66.667 16.62 0.00 38.48 5.03
6893 9293 2.682155 TAAATGGCCGGGAATTTTGC 57.318 45.000 2.18 0.00 0.00 3.68
6920 9320 2.816087 GGGAACGGTTTTTCCTACCTTC 59.184 50.000 0.00 0.00 44.16 3.46
6922 9322 2.574006 GGGAACGGTTTTTCCTACCT 57.426 50.000 0.00 0.00 44.16 3.08
6941 9341 5.569823 TGACCAAAACTTTTCTTCGTTTTCG 59.430 36.000 0.00 0.00 40.29 3.46
6948 9348 9.145865 TGTAACAAATGACCAAAACTTTTCTTC 57.854 29.630 0.00 0.00 0.00 2.87
7013 9413 0.480252 GGGGAAAGGGCAGCAGATAT 59.520 55.000 0.00 0.00 0.00 1.63
7099 9499 3.067180 CAGAAAAAGGCTTCAGACAGCAA 59.933 43.478 0.00 0.00 42.10 3.91
7177 9577 7.611213 ACCACTATCCTAAACAAATTCTTCG 57.389 36.000 0.00 0.00 0.00 3.79
7188 9588 9.403583 GACCATGAAAAATACCACTATCCTAAA 57.596 33.333 0.00 0.00 0.00 1.85
7191 9591 7.127955 AGAGACCATGAAAAATACCACTATCCT 59.872 37.037 0.00 0.00 0.00 3.24
7208 9608 3.067883 AGACGTCATGATCAGAGACCATG 59.932 47.826 19.50 11.71 39.08 3.66
7209 9609 3.295093 AGACGTCATGATCAGAGACCAT 58.705 45.455 19.50 11.65 0.00 3.55
7239 9642 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
7240 9643 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
7241 9644 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
7242 9645 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
7243 9646 5.551233 TGAGACACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
7244 9647 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
7245 9648 5.335191 GCTTGAGACACTTATTTTGGGACAG 60.335 44.000 0.00 0.00 42.39 3.51
7246 9649 4.518970 GCTTGAGACACTTATTTTGGGACA 59.481 41.667 0.00 0.00 0.00 4.02
7247 9650 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
7248 9651 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
7249 9652 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
7250 9653 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
7251 9654 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
7252 9655 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
7253 9656 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
7254 9657 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
7255 9658 7.897864 AGTTGTACTAAGCTTGAGACACTTAT 58.102 34.615 9.86 0.00 0.00 1.73
7256 9659 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
7257 9660 6.163135 AGTTGTACTAAGCTTGAGACACTT 57.837 37.500 9.86 0.00 0.00 3.16
7258 9661 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
7259 9662 6.846325 AAAGTTGTACTAAGCTTGAGACAC 57.154 37.500 9.86 7.18 0.00 3.67
7260 9663 7.437267 GTGTAAAGTTGTACTAAGCTTGAGACA 59.563 37.037 9.86 7.12 0.00 3.41
7261 9664 7.785144 GTGTAAAGTTGTACTAAGCTTGAGAC 58.215 38.462 9.86 4.39 0.00 3.36
7262 9665 7.941795 GTGTAAAGTTGTACTAAGCTTGAGA 57.058 36.000 9.86 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.