Multiple sequence alignment - TraesCS1B01G058300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G058300 chr1B 100.000 6009 0 0 1 6009 40385745 40391753 0.000000e+00 11097.0
1 TraesCS1B01G058300 chr1B 95.759 448 12 1 1 441 622578943 622578496 0.000000e+00 715.0
2 TraesCS1B01G058300 chr1B 90.222 225 22 0 981 1205 40195553 40195777 1.640000e-75 294.0
3 TraesCS1B01G058300 chr1B 79.949 389 42 20 1572 1950 40195949 40196311 2.780000e-63 254.0
4 TraesCS1B01G058300 chr1B 87.562 201 24 1 996 1195 40330576 40330776 1.300000e-56 231.0
5 TraesCS1B01G058300 chr1D 92.156 3302 153 48 438 3682 25100820 25104072 0.000000e+00 4566.0
6 TraesCS1B01G058300 chr1D 93.834 2011 98 9 3691 5685 25104207 25106207 0.000000e+00 3003.0
7 TraesCS1B01G058300 chr1D 92.097 329 24 2 5683 6009 25106755 25107083 4.240000e-126 462.0
8 TraesCS1B01G058300 chr1D 88.364 275 23 8 939 1205 24787638 24787911 7.510000e-84 322.0
9 TraesCS1B01G058300 chr1D 79.950 404 45 19 1557 1950 24788067 24788444 1.280000e-66 265.0
10 TraesCS1B01G058300 chr1D 88.325 197 23 0 996 1192 24929816 24930012 2.800000e-58 237.0
11 TraesCS1B01G058300 chr1D 79.832 119 15 8 1819 1933 24930397 24930510 1.800000e-10 78.7
12 TraesCS1B01G058300 chr1A 91.156 995 65 15 1501 2482 25791758 25792742 0.000000e+00 1328.0
13 TraesCS1B01G058300 chr1A 87.302 1071 95 17 4338 5396 25794790 25795831 0.000000e+00 1186.0
14 TraesCS1B01G058300 chr1A 90.997 722 60 5 3691 4410 25794075 25794793 0.000000e+00 968.0
15 TraesCS1B01G058300 chr1A 84.718 746 105 9 2939 3682 25793214 25793952 0.000000e+00 737.0
16 TraesCS1B01G058300 chr1A 91.224 433 30 6 2483 2907 25792782 25793214 3.120000e-162 582.0
17 TraesCS1B01G058300 chr1A 83.725 553 48 24 697 1209 25790982 25791532 9.050000e-133 484.0
18 TraesCS1B01G058300 chr1A 88.364 275 23 8 939 1205 25710093 25710366 7.510000e-84 322.0
19 TraesCS1B01G058300 chr1A 91.284 218 18 1 1246 1463 25791533 25791749 4.550000e-76 296.0
20 TraesCS1B01G058300 chr1A 88.889 225 21 4 1726 1950 25710898 25711118 2.130000e-69 274.0
21 TraesCS1B01G058300 chr1A 94.000 50 2 1 600 649 25790938 25790986 2.320000e-09 75.0
22 TraesCS1B01G058300 chr7B 96.388 443 9 1 3 438 706159100 706159542 0.000000e+00 723.0
23 TraesCS1B01G058300 chr7B 95.973 447 11 1 1 440 721100818 721100372 0.000000e+00 719.0
24 TraesCS1B01G058300 chr7B 95.536 448 13 1 1 441 708516733 708517180 0.000000e+00 710.0
25 TraesCS1B01G058300 chr7B 95.526 447 13 1 1 440 712778563 712778117 0.000000e+00 708.0
26 TraesCS1B01G058300 chr3B 95.955 445 9 2 1 438 775441997 775442439 0.000000e+00 713.0
27 TraesCS1B01G058300 chr5B 95.730 445 12 1 1 438 590556454 590556898 0.000000e+00 710.0
28 TraesCS1B01G058300 chr5B 94.372 462 14 4 1 451 551809435 551808975 0.000000e+00 699.0
29 TraesCS1B01G058300 chr4B 95.344 451 13 2 1 443 579361470 579361020 0.000000e+00 710.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G058300 chr1B 40385745 40391753 6008 False 11097.0 11097 100.000000 1 6009 1 chr1B.!!$F2 6008
1 TraesCS1B01G058300 chr1B 40195553 40196311 758 False 274.0 294 85.085500 981 1950 2 chr1B.!!$F3 969
2 TraesCS1B01G058300 chr1D 25100820 25107083 6263 False 2677.0 4566 92.695667 438 6009 3 chr1D.!!$F3 5571
3 TraesCS1B01G058300 chr1D 24787638 24788444 806 False 293.5 322 84.157000 939 1950 2 chr1D.!!$F1 1011
4 TraesCS1B01G058300 chr1A 25790938 25795831 4893 False 707.0 1328 89.300750 600 5396 8 chr1A.!!$F2 4796
5 TraesCS1B01G058300 chr1A 25710093 25711118 1025 False 298.0 322 88.626500 939 1950 2 chr1A.!!$F1 1011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.033228 TGCAAAGTGGGCCAATTTCG 59.967 50.00 27.50 22.02 29.07 3.46 F
570 571 0.389391 TTTCTCCTGGATCGATCGCC 59.611 55.00 18.81 7.59 0.00 5.54 F
992 1050 0.465705 TGCCATCTGAATCTCCGGTC 59.534 55.00 0.00 0.00 0.00 4.79 F
2074 2415 0.676151 TTCATAGTGTGCATGCGCCA 60.676 50.00 27.42 16.65 37.32 5.69 F
2472 2820 4.601084 TGTTCCAACTTTTAACACCCTCA 58.399 39.13 0.00 0.00 0.00 3.86 F
3233 3631 1.168714 CTGCCCAAAGTTGCTAGACC 58.831 55.00 0.00 0.00 0.00 3.85 F
4854 5449 0.522626 TCAGCAAACCACATCATGCG 59.477 50.00 0.00 0.00 43.39 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1788 0.837940 GGCTCCCCGGTTCTAGATTT 59.162 55.000 0.00 0.00 0.00 2.17 R
2052 2393 1.267732 GCGCATGCACACTATGAAGTC 60.268 52.381 19.57 0.00 42.15 3.01 R
2631 3026 2.733956 TGGATATGGGGTGCAGTTTTC 58.266 47.619 0.00 0.00 0.00 2.29 R
3111 3509 0.627451 AGGGCTCATTCTGGCATGAA 59.373 50.000 0.00 0.00 32.63 2.57 R
3557 3956 2.169352 CTCAAGATCGGGCCCATATAGG 59.831 54.545 24.92 3.75 37.03 2.57 R
4957 5552 1.443802 GTTGCCCTCTGTGTTAGCTC 58.556 55.000 0.00 0.00 0.00 4.09 R
5927 7093 0.609957 CACCAAATCAGGCAGGCAGA 60.610 55.000 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.026522 CGTCAGGAGATCCGAGACC 58.973 63.158 16.67 0.00 40.44 3.85
19 20 1.448922 CGTCAGGAGATCCGAGACCC 61.449 65.000 16.67 0.00 40.44 4.46
20 21 0.395862 GTCAGGAGATCCGAGACCCA 60.396 60.000 13.38 0.00 42.08 4.51
21 22 0.558220 TCAGGAGATCCGAGACCCAT 59.442 55.000 0.00 0.00 42.08 4.00
22 23 1.780919 TCAGGAGATCCGAGACCCATA 59.219 52.381 0.00 0.00 42.08 2.74
23 24 2.166829 CAGGAGATCCGAGACCCATAG 58.833 57.143 0.00 0.00 42.08 2.23
24 25 1.076350 AGGAGATCCGAGACCCATAGG 59.924 57.143 0.00 0.00 42.08 2.57
25 26 3.577307 AGGAGATCCGAGACCCATAGGT 61.577 54.545 0.00 0.00 46.02 3.08
26 27 5.664708 AGGAGATCCGAGACCCATAGGTG 62.665 56.522 0.00 0.00 44.25 4.00
37 38 3.219176 CCCATAGGTGCATCATCAACT 57.781 47.619 0.00 0.00 37.78 3.16
38 39 2.882761 CCCATAGGTGCATCATCAACTG 59.117 50.000 0.00 0.00 34.39 3.16
39 40 2.292569 CCATAGGTGCATCATCAACTGC 59.707 50.000 0.00 0.00 34.39 4.40
40 41 2.785540 TAGGTGCATCATCAACTGCA 57.214 45.000 0.00 0.00 45.60 4.41
45 46 3.842732 TGCATCATCAACTGCAGAAAG 57.157 42.857 23.35 9.59 43.11 2.62
46 47 3.414269 TGCATCATCAACTGCAGAAAGA 58.586 40.909 23.35 14.88 43.11 2.52
47 48 4.014406 TGCATCATCAACTGCAGAAAGAT 58.986 39.130 23.35 16.48 43.11 2.40
48 49 4.095932 TGCATCATCAACTGCAGAAAGATC 59.904 41.667 23.35 8.57 43.11 2.75
49 50 4.335874 GCATCATCAACTGCAGAAAGATCT 59.664 41.667 23.35 7.06 38.28 2.75
61 62 4.840716 AGAAAGATCTGATTGAGCACCT 57.159 40.909 0.00 0.00 33.59 4.00
62 63 5.946942 AGAAAGATCTGATTGAGCACCTA 57.053 39.130 0.00 0.00 33.59 3.08
63 64 6.497624 AGAAAGATCTGATTGAGCACCTAT 57.502 37.500 0.00 0.00 33.59 2.57
64 65 6.289834 AGAAAGATCTGATTGAGCACCTATG 58.710 40.000 0.00 0.00 33.59 2.23
65 66 4.620589 AGATCTGATTGAGCACCTATGG 57.379 45.455 0.00 0.00 32.67 2.74
66 67 4.229639 AGATCTGATTGAGCACCTATGGA 58.770 43.478 0.00 0.00 32.67 3.41
67 68 4.283978 AGATCTGATTGAGCACCTATGGAG 59.716 45.833 0.00 0.00 32.67 3.86
77 78 2.149530 CCTATGGAGGCTCAAGGGG 58.850 63.158 17.69 7.65 35.54 4.79
78 79 1.422161 CCTATGGAGGCTCAAGGGGG 61.422 65.000 17.69 7.53 35.54 5.40
79 80 0.400525 CTATGGAGGCTCAAGGGGGA 60.401 60.000 17.69 0.00 0.00 4.81
80 81 0.694444 TATGGAGGCTCAAGGGGGAC 60.694 60.000 17.69 0.00 0.00 4.46
81 82 3.787001 GGAGGCTCAAGGGGGACG 61.787 72.222 17.69 0.00 0.00 4.79
82 83 4.475135 GAGGCTCAAGGGGGACGC 62.475 72.222 10.25 0.00 43.76 5.19
94 95 3.115892 GGACGCCGCGTGATGAAA 61.116 61.111 25.60 0.00 41.37 2.69
95 96 2.461110 GGACGCCGCGTGATGAAAT 61.461 57.895 25.60 0.00 41.37 2.17
96 97 1.149361 GGACGCCGCGTGATGAAATA 61.149 55.000 25.60 0.00 41.37 1.40
97 98 0.043310 GACGCCGCGTGATGAAATAC 60.043 55.000 25.60 0.90 41.37 1.89
98 99 1.084290 CGCCGCGTGATGAAATACG 60.084 57.895 4.92 0.00 42.79 3.06
99 100 1.476235 CGCCGCGTGATGAAATACGA 61.476 55.000 4.92 0.00 42.54 3.43
100 101 0.229753 GCCGCGTGATGAAATACGAG 59.770 55.000 4.92 0.00 42.54 4.18
101 102 1.556564 CCGCGTGATGAAATACGAGT 58.443 50.000 4.92 0.00 42.54 4.18
102 103 1.924524 CCGCGTGATGAAATACGAGTT 59.075 47.619 4.92 0.00 42.54 3.01
103 104 2.347452 CCGCGTGATGAAATACGAGTTT 59.653 45.455 4.92 0.00 42.54 2.66
104 105 3.181524 CCGCGTGATGAAATACGAGTTTT 60.182 43.478 4.92 0.00 42.54 2.43
105 106 4.391358 CGCGTGATGAAATACGAGTTTTT 58.609 39.130 0.00 0.00 42.54 1.94
106 107 5.444877 CCGCGTGATGAAATACGAGTTTTTA 60.445 40.000 4.92 0.00 42.54 1.52
107 108 6.182634 CGCGTGATGAAATACGAGTTTTTAT 58.817 36.000 0.00 0.00 42.54 1.40
108 109 6.681178 CGCGTGATGAAATACGAGTTTTTATT 59.319 34.615 0.00 0.00 42.54 1.40
109 110 7.215568 CGCGTGATGAAATACGAGTTTTTATTT 59.784 33.333 0.00 0.00 42.54 1.40
110 111 8.304138 GCGTGATGAAATACGAGTTTTTATTTG 58.696 33.333 0.00 0.00 42.54 2.32
111 112 9.325150 CGTGATGAAATACGAGTTTTTATTTGT 57.675 29.630 0.00 0.00 42.54 2.83
157 158 9.915629 TTTGTTGTTGTAGTATTTTGTTGAAGT 57.084 25.926 0.00 0.00 0.00 3.01
192 193 9.904198 TTTCTGTGATGAAATATGTGATAAGGA 57.096 29.630 0.00 0.00 31.81 3.36
193 194 9.904198 TTCTGTGATGAAATATGTGATAAGGAA 57.096 29.630 0.00 0.00 0.00 3.36
215 216 9.787532 AGGAATAATTGTGTTGATAATTGAACG 57.212 29.630 0.00 0.00 0.00 3.95
216 217 8.531530 GGAATAATTGTGTTGATAATTGAACGC 58.468 33.333 0.00 0.00 33.96 4.84
217 218 7.985634 ATAATTGTGTTGATAATTGAACGCC 57.014 32.000 0.00 0.00 32.66 5.68
218 219 3.463533 TGTGTTGATAATTGAACGCCG 57.536 42.857 0.00 0.00 32.66 6.46
219 220 3.067833 TGTGTTGATAATTGAACGCCGA 58.932 40.909 0.00 0.00 32.66 5.54
220 221 3.124466 TGTGTTGATAATTGAACGCCGAG 59.876 43.478 0.00 0.00 32.66 4.63
221 222 3.369756 GTGTTGATAATTGAACGCCGAGA 59.630 43.478 0.00 0.00 0.00 4.04
222 223 3.369756 TGTTGATAATTGAACGCCGAGAC 59.630 43.478 0.00 0.00 0.00 3.36
223 224 3.239587 TGATAATTGAACGCCGAGACA 57.760 42.857 0.00 0.00 0.00 3.41
224 225 2.927477 TGATAATTGAACGCCGAGACAC 59.073 45.455 0.00 0.00 0.00 3.67
225 226 1.342555 TAATTGAACGCCGAGACACG 58.657 50.000 0.00 0.00 42.18 4.49
234 235 2.355363 CGAGACACGGCGAAACCA 60.355 61.111 16.62 0.00 39.03 3.67
235 236 2.654912 CGAGACACGGCGAAACCAC 61.655 63.158 16.62 0.00 39.03 4.16
236 237 2.654912 GAGACACGGCGAAACCACG 61.655 63.158 16.62 0.00 39.03 4.94
245 246 3.798506 CGAAACCACGCCGAATATG 57.201 52.632 0.00 0.00 0.00 1.78
246 247 0.303493 CGAAACCACGCCGAATATGG 59.697 55.000 0.00 0.00 39.57 2.74
247 248 0.661020 GAAACCACGCCGAATATGGG 59.339 55.000 0.00 0.00 37.86 4.00
255 256 2.789409 GCCGAATATGGGCCTATTCT 57.211 50.000 22.26 0.00 44.97 2.40
256 257 2.633488 GCCGAATATGGGCCTATTCTC 58.367 52.381 22.26 3.45 44.97 2.87
257 258 2.893637 CCGAATATGGGCCTATTCTCG 58.106 52.381 19.45 19.45 36.42 4.04
258 259 2.271800 CGAATATGGGCCTATTCTCGC 58.728 52.381 22.26 7.55 36.42 5.03
259 260 2.093973 CGAATATGGGCCTATTCTCGCT 60.094 50.000 22.26 0.00 36.42 4.93
260 261 3.526534 GAATATGGGCCTATTCTCGCTC 58.473 50.000 7.02 0.00 35.91 5.03
261 262 2.009681 TATGGGCCTATTCTCGCTCA 57.990 50.000 7.02 0.00 40.44 4.26
262 263 1.356124 ATGGGCCTATTCTCGCTCAT 58.644 50.000 4.53 0.00 41.41 2.90
263 264 2.009681 TGGGCCTATTCTCGCTCATA 57.990 50.000 4.53 0.00 28.09 2.15
264 265 2.540383 TGGGCCTATTCTCGCTCATAT 58.460 47.619 4.53 0.00 28.09 1.78
265 266 2.234661 TGGGCCTATTCTCGCTCATATG 59.765 50.000 4.53 0.00 28.09 1.78
266 267 2.419297 GGGCCTATTCTCGCTCATATGG 60.419 54.545 0.84 0.00 0.00 2.74
267 268 2.419297 GGCCTATTCTCGCTCATATGGG 60.419 54.545 2.13 0.00 0.00 4.00
268 269 2.898705 CCTATTCTCGCTCATATGGGC 58.101 52.381 18.13 18.13 0.00 5.36
269 270 2.419297 CCTATTCTCGCTCATATGGGCC 60.419 54.545 21.87 4.53 0.00 5.80
270 271 0.036952 ATTCTCGCTCATATGGGCCG 60.037 55.000 21.87 16.15 0.00 6.13
271 272 1.399744 TTCTCGCTCATATGGGCCGT 61.400 55.000 21.87 2.58 0.00 5.68
272 273 1.069765 CTCGCTCATATGGGCCGTT 59.930 57.895 21.87 0.00 0.00 4.44
273 274 0.532862 CTCGCTCATATGGGCCGTTT 60.533 55.000 21.87 0.00 0.00 3.60
274 275 0.753867 TCGCTCATATGGGCCGTTTA 59.246 50.000 21.87 0.00 0.00 2.01
275 276 1.346395 TCGCTCATATGGGCCGTTTAT 59.654 47.619 21.87 0.00 0.00 1.40
276 277 2.151202 CGCTCATATGGGCCGTTTATT 58.849 47.619 21.87 0.00 0.00 1.40
277 278 2.159627 CGCTCATATGGGCCGTTTATTC 59.840 50.000 21.87 0.00 0.00 1.75
278 279 2.159627 GCTCATATGGGCCGTTTATTCG 59.840 50.000 17.30 0.00 0.00 3.34
279 280 2.147958 TCATATGGGCCGTTTATTCGC 58.852 47.619 2.17 0.00 0.00 4.70
280 281 1.199097 CATATGGGCCGTTTATTCGCC 59.801 52.381 2.17 0.00 0.00 5.54
281 282 0.881159 TATGGGCCGTTTATTCGCCG 60.881 55.000 2.17 0.00 0.00 6.46
282 283 2.512057 GGGCCGTTTATTCGCCGA 60.512 61.111 0.00 0.00 0.00 5.54
283 284 2.107903 GGGCCGTTTATTCGCCGAA 61.108 57.895 0.33 0.33 0.00 4.30
284 285 1.646624 GGGCCGTTTATTCGCCGAAA 61.647 55.000 2.60 0.00 0.00 3.46
285 286 0.379316 GGCCGTTTATTCGCCGAAAT 59.621 50.000 2.60 0.00 0.00 2.17
286 287 1.202211 GGCCGTTTATTCGCCGAAATT 60.202 47.619 2.60 0.00 0.00 1.82
287 288 1.843753 GCCGTTTATTCGCCGAAATTG 59.156 47.619 2.60 0.00 0.00 2.32
288 289 2.446282 CCGTTTATTCGCCGAAATTGG 58.554 47.619 2.60 0.00 0.00 3.16
289 290 2.446282 CGTTTATTCGCCGAAATTGGG 58.554 47.619 2.60 0.00 0.00 4.12
297 298 3.126729 CCGAAATTGGGCTGCAAAG 57.873 52.632 0.50 0.00 0.00 2.77
298 299 0.318120 CCGAAATTGGGCTGCAAAGT 59.682 50.000 0.50 0.00 0.00 2.66
299 300 1.421382 CGAAATTGGGCTGCAAAGTG 58.579 50.000 0.50 0.00 0.00 3.16
300 301 1.799544 GAAATTGGGCTGCAAAGTGG 58.200 50.000 0.50 0.00 0.00 4.00
301 302 0.397564 AAATTGGGCTGCAAAGTGGG 59.602 50.000 0.50 0.00 0.00 4.61
302 303 2.115734 AATTGGGCTGCAAAGTGGGC 62.116 55.000 0.50 0.00 0.00 5.36
305 306 3.233231 GGCTGCAAAGTGGGCCAA 61.233 61.111 8.40 0.00 43.59 4.52
306 307 2.586293 GGCTGCAAAGTGGGCCAAT 61.586 57.895 8.40 3.05 43.59 3.16
307 308 1.372307 GCTGCAAAGTGGGCCAATT 59.628 52.632 14.45 14.45 0.00 2.32
308 309 0.250424 GCTGCAAAGTGGGCCAATTT 60.250 50.000 25.03 25.03 31.76 1.82
309 310 1.799544 CTGCAAAGTGGGCCAATTTC 58.200 50.000 27.50 21.06 29.07 2.17
310 311 0.033228 TGCAAAGTGGGCCAATTTCG 59.967 50.000 27.50 22.02 29.07 3.46
311 312 0.670239 GCAAAGTGGGCCAATTTCGG 60.670 55.000 27.50 18.68 29.07 4.30
318 319 4.496927 GCCAATTTCGGCGCCTGG 62.497 66.667 26.68 24.98 43.52 4.45
319 320 3.825611 CCAATTTCGGCGCCTGGG 61.826 66.667 26.68 8.93 0.00 4.45
320 321 3.825611 CAATTTCGGCGCCTGGGG 61.826 66.667 26.68 9.07 0.00 4.96
331 332 4.437587 CCTGGGGGCAAGCTGGAG 62.438 72.222 0.00 0.00 0.00 3.86
332 333 4.437587 CTGGGGGCAAGCTGGAGG 62.438 72.222 0.00 0.00 0.00 4.30
342 343 4.803426 GCTGGAGGCGACGACTGG 62.803 72.222 8.65 0.00 0.00 4.00
343 344 4.135153 CTGGAGGCGACGACTGGG 62.135 72.222 8.65 0.00 0.00 4.45
350 351 3.342627 CGACGACTGGGCGCAAAA 61.343 61.111 10.83 0.00 33.86 2.44
351 352 2.251371 GACGACTGGGCGCAAAAC 59.749 61.111 10.83 0.00 33.86 2.43
352 353 3.249973 GACGACTGGGCGCAAAACC 62.250 63.158 10.83 0.47 33.86 3.27
353 354 4.383602 CGACTGGGCGCAAAACCG 62.384 66.667 10.83 2.69 0.00 4.44
361 362 2.359478 CGCAAAACCGCCCCTAGT 60.359 61.111 0.00 0.00 0.00 2.57
362 363 2.686816 CGCAAAACCGCCCCTAGTG 61.687 63.158 0.00 0.00 0.00 2.74
363 364 2.989881 GCAAAACCGCCCCTAGTGC 61.990 63.158 0.00 0.00 0.00 4.40
364 365 2.035155 AAAACCGCCCCTAGTGCC 59.965 61.111 0.00 0.00 0.00 5.01
365 366 3.912745 AAAACCGCCCCTAGTGCCG 62.913 63.158 0.00 0.00 0.00 5.69
369 370 4.514577 CGCCCCTAGTGCCGAGTG 62.515 72.222 0.00 0.00 0.00 3.51
370 371 3.391382 GCCCCTAGTGCCGAGTGT 61.391 66.667 0.00 0.00 0.00 3.55
371 372 2.056223 GCCCCTAGTGCCGAGTGTA 61.056 63.158 0.00 0.00 0.00 2.90
372 373 1.400530 GCCCCTAGTGCCGAGTGTAT 61.401 60.000 0.00 0.00 0.00 2.29
373 374 0.674534 CCCCTAGTGCCGAGTGTATC 59.325 60.000 0.00 0.00 0.00 2.24
381 382 2.353607 CGAGTGTATCGCCGGCTC 60.354 66.667 26.68 12.39 45.98 4.70
382 383 2.353607 GAGTGTATCGCCGGCTCG 60.354 66.667 26.68 10.37 0.00 5.03
383 384 4.570663 AGTGTATCGCCGGCTCGC 62.571 66.667 26.68 17.46 0.00 5.03
404 405 1.967319 CCCAGGGGACGATTTGTATG 58.033 55.000 0.00 0.00 37.50 2.39
405 406 1.308998 CCAGGGGACGATTTGTATGC 58.691 55.000 0.00 0.00 0.00 3.14
406 407 0.937304 CAGGGGACGATTTGTATGCG 59.063 55.000 0.00 0.00 0.00 4.73
407 408 0.539986 AGGGGACGATTTGTATGCGT 59.460 50.000 0.00 0.00 41.45 5.24
408 409 1.758280 AGGGGACGATTTGTATGCGTA 59.242 47.619 0.00 0.00 38.51 4.42
409 410 1.862827 GGGGACGATTTGTATGCGTAC 59.137 52.381 9.25 9.25 38.51 3.67
410 411 2.482490 GGGGACGATTTGTATGCGTACT 60.482 50.000 16.78 0.00 38.82 2.73
411 412 2.538449 GGGACGATTTGTATGCGTACTG 59.462 50.000 16.78 4.86 38.82 2.74
412 413 2.538449 GGACGATTTGTATGCGTACTGG 59.462 50.000 16.78 1.49 38.51 4.00
413 414 2.538449 GACGATTTGTATGCGTACTGGG 59.462 50.000 16.78 5.00 38.51 4.45
414 415 1.864711 CGATTTGTATGCGTACTGGGG 59.135 52.381 16.78 0.00 0.00 4.96
415 416 2.218603 GATTTGTATGCGTACTGGGGG 58.781 52.381 16.78 0.00 0.00 5.40
441 442 1.227674 GGCTGGAGATGCCCTTACG 60.228 63.158 0.00 0.00 44.32 3.18
453 454 1.104630 CCCTTACGAGTCTGTCTCCC 58.895 60.000 0.00 0.00 39.84 4.30
454 455 1.341187 CCCTTACGAGTCTGTCTCCCT 60.341 57.143 0.00 0.00 39.84 4.20
468 469 0.598562 CTCCCTGTACGGATCATCGG 59.401 60.000 2.31 0.00 33.16 4.18
495 496 6.759827 GGCACTTATCTATGTACGGAGAAAAA 59.240 38.462 1.06 0.00 0.00 1.94
527 528 9.743581 ATAAATTACATGAGTGGATGATATGCA 57.256 29.630 0.00 0.00 0.00 3.96
561 562 2.553028 GCAGTGGACATTTTCTCCTGGA 60.553 50.000 0.00 0.00 0.00 3.86
562 563 3.875369 GCAGTGGACATTTTCTCCTGGAT 60.875 47.826 0.00 0.00 0.00 3.41
563 564 3.944015 CAGTGGACATTTTCTCCTGGATC 59.056 47.826 0.00 0.00 0.00 3.36
564 565 2.939103 GTGGACATTTTCTCCTGGATCG 59.061 50.000 0.00 0.00 0.00 3.69
565 566 2.837591 TGGACATTTTCTCCTGGATCGA 59.162 45.455 0.00 0.00 0.00 3.59
566 567 3.455910 TGGACATTTTCTCCTGGATCGAT 59.544 43.478 0.00 0.00 0.00 3.59
567 568 4.061596 GGACATTTTCTCCTGGATCGATC 58.938 47.826 17.36 17.36 0.00 3.69
568 569 3.722147 ACATTTTCTCCTGGATCGATCG 58.278 45.455 18.81 9.36 0.00 3.69
569 570 2.225068 TTTTCTCCTGGATCGATCGC 57.775 50.000 18.81 12.27 0.00 4.58
570 571 0.389391 TTTCTCCTGGATCGATCGCC 59.611 55.000 18.81 7.59 0.00 5.54
571 572 1.464376 TTCTCCTGGATCGATCGCCC 61.464 60.000 18.81 14.33 0.00 6.13
572 573 1.905843 CTCCTGGATCGATCGCCCT 60.906 63.158 18.81 6.23 0.00 5.19
573 574 2.152297 CTCCTGGATCGATCGCCCTG 62.152 65.000 18.81 20.13 0.00 4.45
574 575 2.341543 CTGGATCGATCGCCCTGG 59.658 66.667 18.81 13.24 0.00 4.45
580 581 1.528292 ATCGATCGCCCTGGTAGCTC 61.528 60.000 11.09 0.00 0.00 4.09
660 664 2.552315 CGCAACCATAGTCCAAAGTTGT 59.448 45.455 0.00 0.00 39.92 3.32
665 669 3.569701 ACCATAGTCCAAAGTTGTTGCAG 59.430 43.478 0.00 0.00 0.00 4.41
683 687 0.543749 AGGAAGATCGAAAGCAGGGG 59.456 55.000 0.00 0.00 0.00 4.79
688 692 2.716217 AGATCGAAAGCAGGGGAAAAG 58.284 47.619 0.00 0.00 0.00 2.27
692 696 1.257743 GAAAGCAGGGGAAAAGGGTC 58.742 55.000 0.00 0.00 0.00 4.46
711 715 2.934553 GTCGGTCCATACCTAACTTTGC 59.065 50.000 0.00 0.00 44.35 3.68
713 717 2.355310 CGGTCCATACCTAACTTTGCCA 60.355 50.000 0.00 0.00 44.35 4.92
748 752 4.526650 GGAAATTGAGCCAAGAAAGGGTAA 59.473 41.667 0.00 0.00 40.02 2.85
853 857 1.064946 GATGACGAGACCTGAGGCG 59.935 63.158 0.00 0.00 0.00 5.52
873 877 2.686915 CGGAGTGGGGTACAAGTACTAG 59.313 54.545 9.94 0.00 36.36 2.57
874 878 2.429971 GGAGTGGGGTACAAGTACTAGC 59.570 54.545 9.94 0.00 36.36 3.42
875 879 3.094572 GAGTGGGGTACAAGTACTAGCA 58.905 50.000 9.94 0.00 36.36 3.49
907 926 3.113322 GTGCTTCTTTCCAAACGAAACC 58.887 45.455 0.00 0.00 35.49 3.27
932 977 2.167487 GTGACCAACTCCTCATCTCTCC 59.833 54.545 0.00 0.00 0.00 3.71
941 986 4.138290 CTCCTCATCTCTCCGCTAGTAAA 58.862 47.826 0.00 0.00 0.00 2.01
942 987 4.730966 TCCTCATCTCTCCGCTAGTAAAT 58.269 43.478 0.00 0.00 0.00 1.40
949 995 5.877491 TCTCTCCGCTAGTAAATATCTCCA 58.123 41.667 0.00 0.00 0.00 3.86
962 1008 1.972660 ATCTCCAGTTAGCCGGCCAC 61.973 60.000 26.15 20.87 0.00 5.01
963 1009 4.077184 TCCAGTTAGCCGGCCACG 62.077 66.667 26.15 15.58 40.55 4.94
973 1019 4.379243 CGGCCACGGTTGCTCTCT 62.379 66.667 2.24 0.00 36.18 3.10
974 1020 2.743928 GGCCACGGTTGCTCTCTG 60.744 66.667 0.00 0.00 0.00 3.35
992 1050 0.465705 TGCCATCTGAATCTCCGGTC 59.534 55.000 0.00 0.00 0.00 4.79
1209 1267 4.500887 GGGTACGCTGCTGTTTATAGATCA 60.501 45.833 2.05 0.00 0.00 2.92
1211 1269 4.392921 ACGCTGCTGTTTATAGATCAGT 57.607 40.909 0.00 0.00 0.00 3.41
1214 1272 5.046529 CGCTGCTGTTTATAGATCAGTCTT 58.953 41.667 0.00 0.00 35.87 3.01
1226 1284 5.643379 AGATCAGTCTTTCTGTCTGTCTC 57.357 43.478 0.00 0.00 43.97 3.36
1383 1463 4.266714 TGACGAGTGTGTGACCTATATGA 58.733 43.478 0.00 0.00 0.00 2.15
1403 1483 2.102252 GAGGCTGGATGTGTCTTCCTAG 59.898 54.545 0.00 0.00 34.17 3.02
1466 1782 4.272489 TCTGAGGATGCTTGGTAATTTGG 58.728 43.478 0.00 0.00 0.00 3.28
1472 1788 2.050144 TGCTTGGTAATTTGGGCCAAA 58.950 42.857 32.12 32.12 41.15 3.28
1483 1799 4.882842 TTTGGGCCAAAAATCTAGAACC 57.117 40.909 28.69 0.00 29.89 3.62
1490 1811 2.683362 CAAAAATCTAGAACCGGGGAGC 59.317 50.000 6.32 0.00 0.00 4.70
1494 1815 1.221021 CTAGAACCGGGGAGCCAAC 59.779 63.158 6.32 0.00 0.00 3.77
1498 1819 1.524008 GAACCGGGGAGCCAACTTTG 61.524 60.000 6.32 0.00 0.00 2.77
1499 1820 3.373565 CCGGGGAGCCAACTTTGC 61.374 66.667 0.00 0.00 0.00 3.68
1502 1823 1.533994 GGGGAGCCAACTTTGCCTT 60.534 57.895 0.00 0.00 0.00 4.35
1508 1829 3.412386 GAGCCAACTTTGCCTTAAGAGA 58.588 45.455 3.36 0.00 0.00 3.10
1519 1840 3.008375 TGCCTTAAGAGAACAGACATGCT 59.992 43.478 3.36 0.00 0.00 3.79
1570 1891 8.467598 TCTCAAGCGACAGTTAAATAGTAATCT 58.532 33.333 0.00 0.00 0.00 2.40
1603 1928 3.165071 GGTCTCCATCACCCAATGTTTT 58.835 45.455 0.00 0.00 0.00 2.43
1620 1945 7.391275 CCAATGTTTTGAGCCAAATTTAATCCT 59.609 33.333 0.00 0.00 33.19 3.24
1643 1968 3.154827 TCTTCATTCCACCCAAGAACC 57.845 47.619 0.00 0.00 0.00 3.62
1895 2229 2.747446 GGAATTTCGCTTGCCTCACTTA 59.253 45.455 0.00 0.00 0.00 2.24
1981 2322 4.502645 GTGGTTTCACAGTGTTATTTGCAC 59.497 41.667 0.00 0.00 43.13 4.57
2001 2342 4.376819 GCACTCAGAAGTTCTCATTCGTTG 60.377 45.833 1.26 0.00 31.71 4.10
2052 2393 6.904954 AAACATTGTATTTTACGCACTTCG 57.095 33.333 0.00 0.00 45.38 3.79
2074 2415 0.676151 TTCATAGTGTGCATGCGCCA 60.676 50.000 27.42 16.65 37.32 5.69
2186 2530 5.391256 TCTATTTCCCGCTCCAACTCTATA 58.609 41.667 0.00 0.00 0.00 1.31
2247 2592 9.706691 TCTTTGTCCAACTTATTTCTACTACTG 57.293 33.333 0.00 0.00 0.00 2.74
2416 2763 8.624776 GGGATCATTAGACAAATAAACTCAAGG 58.375 37.037 0.00 0.00 0.00 3.61
2472 2820 4.601084 TGTTCCAACTTTTAACACCCTCA 58.399 39.130 0.00 0.00 0.00 3.86
2477 2825 6.001460 TCCAACTTTTAACACCCTCATGTAG 58.999 40.000 0.00 0.00 30.75 2.74
2480 2868 5.948842 ACTTTTAACACCCTCATGTAGGTT 58.051 37.500 6.67 2.48 44.90 3.50
2481 2869 6.002082 ACTTTTAACACCCTCATGTAGGTTC 58.998 40.000 6.67 0.00 44.90 3.62
2631 3026 6.693978 CACATACTATGCCAACACATTCATTG 59.306 38.462 0.00 0.00 0.00 2.82
2640 3035 4.809958 CCAACACATTCATTGAAAACTGCA 59.190 37.500 2.68 0.00 0.00 4.41
2971 3367 7.558161 TTATGTCTACTTCAATGCTCATTGG 57.442 36.000 19.04 9.20 46.08 3.16
2997 3395 7.405769 GTCTGTCCTTCGTATACTTGTACTAC 58.594 42.308 0.56 0.00 0.00 2.73
3051 3449 4.907879 GCATAGCTATCCAATTATGCCC 57.092 45.455 2.34 0.00 41.41 5.36
3111 3509 8.641498 ACAAAGATGGAGATTAACATCAAGTT 57.359 30.769 7.32 0.00 44.50 2.66
3156 3554 8.160765 TCAACCACCTTATTCTTGATGTCTTTA 58.839 33.333 0.00 0.00 0.00 1.85
3160 3558 8.454106 CCACCTTATTCTTGATGTCTTTACTTG 58.546 37.037 0.00 0.00 0.00 3.16
3180 3578 3.148412 TGATGTGATTATCCATTGCCGG 58.852 45.455 0.00 0.00 0.00 6.13
3201 3599 4.643387 GTTGTCCTGGGCGCTGGT 62.643 66.667 23.20 0.00 0.00 4.00
3233 3631 1.168714 CTGCCCAAAGTTGCTAGACC 58.831 55.000 0.00 0.00 0.00 3.85
3241 3639 5.047092 CCCAAAGTTGCTAGACCAATTTCAT 60.047 40.000 0.00 0.00 0.00 2.57
3415 3813 6.611613 TGGGTTGCAAATATGAATTAACCA 57.388 33.333 0.00 0.00 38.21 3.67
3504 3903 4.319177 AGGCAGTGCTCTTGTTACTAAAG 58.681 43.478 16.11 0.00 0.00 1.85
3557 3956 1.559965 GGGGTGGAGTGGGGAAGTAC 61.560 65.000 0.00 0.00 0.00 2.73
3587 3986 1.747355 CCCGATCTTGAGCAAAGCAAT 59.253 47.619 0.00 0.00 35.69 3.56
3589 3988 2.479049 CCGATCTTGAGCAAAGCAATGG 60.479 50.000 0.00 0.00 35.69 3.16
3671 4070 2.526304 TGTGTTGCTCTACAGACCAC 57.474 50.000 0.00 0.00 0.00 4.16
3676 4075 0.538746 TGCTCTACAGACCACCGTCA 60.539 55.000 0.00 0.00 41.87 4.35
3682 4081 2.341846 ACAGACCACCGTCATTTGTT 57.658 45.000 0.00 0.00 41.87 2.83
3683 4082 2.218603 ACAGACCACCGTCATTTGTTC 58.781 47.619 0.00 0.00 41.87 3.18
3685 4084 2.616376 CAGACCACCGTCATTTGTTCAA 59.384 45.455 0.00 0.00 41.87 2.69
3686 4085 3.253188 CAGACCACCGTCATTTGTTCAAT 59.747 43.478 0.00 0.00 41.87 2.57
3687 4086 3.253188 AGACCACCGTCATTTGTTCAATG 59.747 43.478 0.00 0.00 43.51 2.82
3739 4264 9.342308 CATCTTACACAAAGGACCATAATATGT 57.658 33.333 0.00 0.00 35.75 2.29
3951 4477 9.950496 ATACATTATTCCAGGACATTGAGTATC 57.050 33.333 0.00 0.00 0.00 2.24
4222 4749 4.679373 TTTGCTAAACCATTTCAGGCAA 57.321 36.364 0.00 0.00 36.61 4.52
4345 4872 4.996344 TGCTTAACGTTACCATGATCGTA 58.004 39.130 7.70 0.00 35.49 3.43
4394 4989 4.457466 TGTTCTTTCCAGGACCAACTTAC 58.543 43.478 0.00 0.00 0.00 2.34
4478 5073 0.839946 ACCACCATATCACAGAGGGC 59.160 55.000 0.00 0.00 0.00 5.19
4561 5156 2.806608 AAATGTTGAGCTGCACAAGG 57.193 45.000 12.74 0.00 0.00 3.61
4632 5227 4.587684 CGTAGGTATAAGAGAACCACCCAT 59.412 45.833 0.00 0.00 38.30 4.00
4648 5243 7.920160 ACCACCCATGCAAAATTAAAATAAG 57.080 32.000 0.00 0.00 0.00 1.73
4766 5361 2.580815 GCCAGAAGCAAATGGGGC 59.419 61.111 3.63 0.00 42.97 5.80
4785 5380 3.556365 GGGCGATTACAAGTTCTTCTAGC 59.444 47.826 0.00 0.00 0.00 3.42
4854 5449 0.522626 TCAGCAAACCACATCATGCG 59.477 50.000 0.00 0.00 43.39 4.73
4859 5454 2.865670 GCAAACCACATCATGCGGAAAA 60.866 45.455 0.00 0.00 0.00 2.29
5052 5653 5.348997 CGAGGCCAGAAGTTTCTACTAAAAG 59.651 44.000 5.01 0.00 35.34 2.27
5055 5656 5.106515 GGCCAGAAGTTTCTACTAAAAGCTG 60.107 44.000 0.00 0.00 35.34 4.24
5095 5696 1.139058 GACCGGAGTATTGATGTGGCT 59.861 52.381 9.46 0.00 0.00 4.75
5272 5880 6.595682 ACGAGAACATCATTATTGAATCCCT 58.404 36.000 0.00 0.00 34.96 4.20
5279 5887 7.684529 ACATCATTATTGAATCCCTAGACTCC 58.315 38.462 0.00 0.00 34.96 3.85
5331 5939 3.252458 AGTGGGTCGCACTTGTTATTTTC 59.748 43.478 16.35 0.00 0.00 2.29
5339 5947 5.298276 TCGCACTTGTTATTTTCAAGGAACT 59.702 36.000 9.82 0.00 44.29 3.01
5401 6015 7.333528 TGAGTTTGCTTGAGTACATTTTTCT 57.666 32.000 0.00 0.00 0.00 2.52
5403 6017 8.898761 TGAGTTTGCTTGAGTACATTTTTCTTA 58.101 29.630 0.00 0.00 0.00 2.10
5426 6040 3.578282 AGAAAATTCCCAATTTCACCGCT 59.422 39.130 0.00 0.00 40.05 5.52
5447 6061 8.999431 ACCGCTAACAATTATAATATGACCAAG 58.001 33.333 0.00 0.00 0.00 3.61
5448 6062 8.999431 CCGCTAACAATTATAATATGACCAAGT 58.001 33.333 0.00 0.00 0.00 3.16
5506 6120 9.528018 TCAACAAAAGTTCAATTGTTAGATTCC 57.472 29.630 5.13 0.00 45.31 3.01
5521 6135 3.667360 AGATTCCATTGGCTTGCAAAAC 58.333 40.909 0.00 0.00 0.00 2.43
5523 6137 1.422531 TCCATTGGCTTGCAAAACCT 58.577 45.000 16.78 0.00 0.00 3.50
5524 6138 2.603021 TCCATTGGCTTGCAAAACCTA 58.397 42.857 16.78 11.13 0.00 3.08
5525 6139 2.298729 TCCATTGGCTTGCAAAACCTAC 59.701 45.455 16.78 0.00 0.00 3.18
5526 6140 2.327568 CATTGGCTTGCAAAACCTACG 58.672 47.619 16.78 1.39 0.00 3.51
5529 6144 0.110373 GGCTTGCAAAACCTACGACG 60.110 55.000 10.28 0.00 0.00 5.12
5588 6203 4.956075 AGAAAATCACCACAAAGACAGGTT 59.044 37.500 0.00 0.00 32.15 3.50
5631 6246 2.109834 TGGACAAAGGTTCATGGACCAT 59.890 45.455 25.54 10.98 42.35 3.55
5632 6247 3.165071 GGACAAAGGTTCATGGACCATT 58.835 45.455 25.54 16.98 42.35 3.16
5637 6252 7.404671 ACAAAGGTTCATGGACCATTATTAC 57.595 36.000 25.54 0.64 42.35 1.89
5681 6296 4.933400 CCCAAAAAGATGAAAAGGCTCATG 59.067 41.667 0.00 0.00 36.15 3.07
5685 6850 2.376109 AGATGAAAAGGCTCATGGCAG 58.624 47.619 8.20 0.00 44.01 4.85
5743 6909 1.749634 GACTAGATGTGGTGGCTACGT 59.250 52.381 0.00 0.00 0.00 3.57
5774 6940 2.665089 ATTCCACGATGGCCGGTGA 61.665 57.895 19.51 4.55 43.93 4.02
5775 6941 2.191786 ATTCCACGATGGCCGGTGAA 62.192 55.000 19.51 12.99 43.93 3.18
5787 6953 3.244770 TGGCCGGTGAACTTCTAGAATTT 60.245 43.478 5.44 6.71 0.00 1.82
5798 6964 5.112686 ACTTCTAGAATTTGATCGACCAGC 58.887 41.667 5.44 0.00 0.00 4.85
5843 7009 4.783621 CGCCTAGGCTGCTTGGCA 62.784 66.667 30.55 0.00 43.64 4.92
5848 7014 3.285252 TAGGCTGCTTGGCATGGCA 62.285 57.895 19.43 19.43 44.55 4.92
5864 7030 2.345760 GCATGGTGTCTTGCCCCAG 61.346 63.158 0.00 0.00 37.89 4.45
5927 7093 0.031515 TATGGGAGACGGTGGTGGAT 60.032 55.000 0.00 0.00 0.00 3.41
5928 7094 1.338136 ATGGGAGACGGTGGTGGATC 61.338 60.000 0.00 0.00 0.00 3.36
5931 7097 1.153549 GAGACGGTGGTGGATCTGC 60.154 63.158 0.00 0.00 0.00 4.26
5937 7103 2.611800 TGGTGGATCTGCCTGCCT 60.612 61.111 7.43 0.00 37.63 4.75
5938 7104 2.124403 GGTGGATCTGCCTGCCTG 60.124 66.667 0.00 0.00 37.63 4.85
5949 7115 1.880819 GCCTGCCTGATTTGGTGTGG 61.881 60.000 0.00 0.00 0.00 4.17
6001 7168 1.298014 GGGCTGGACTTCTCTGGTG 59.702 63.158 0.00 0.00 0.00 4.17
6003 7170 1.484444 GGCTGGACTTCTCTGGTGGT 61.484 60.000 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.448922 GGGTCTCGGATCTCCTGACG 61.449 65.000 10.82 0.00 37.73 4.35
1 2 0.395862 TGGGTCTCGGATCTCCTGAC 60.396 60.000 9.40 9.40 36.84 3.51
2 3 0.558220 ATGGGTCTCGGATCTCCTGA 59.442 55.000 0.00 0.00 0.00 3.86
3 4 2.166829 CTATGGGTCTCGGATCTCCTG 58.833 57.143 0.00 0.00 0.00 3.86
4 5 1.076350 CCTATGGGTCTCGGATCTCCT 59.924 57.143 0.00 0.00 0.00 3.69
5 6 1.203075 ACCTATGGGTCTCGGATCTCC 60.203 57.143 0.00 0.00 43.38 3.71
6 7 1.889829 CACCTATGGGTCTCGGATCTC 59.110 57.143 0.00 0.00 45.41 2.75
7 8 2.002505 CACCTATGGGTCTCGGATCT 57.997 55.000 0.00 0.00 45.41 2.75
8 9 0.318762 GCACCTATGGGTCTCGGATC 59.681 60.000 0.00 0.00 45.41 3.36
9 10 0.398522 TGCACCTATGGGTCTCGGAT 60.399 55.000 0.00 0.00 45.41 4.18
10 11 0.398522 ATGCACCTATGGGTCTCGGA 60.399 55.000 0.00 0.00 45.41 4.55
11 12 0.034059 GATGCACCTATGGGTCTCGG 59.966 60.000 0.00 0.00 45.41 4.63
12 13 0.752658 TGATGCACCTATGGGTCTCG 59.247 55.000 0.00 0.00 45.41 4.04
13 14 2.369860 TGATGATGCACCTATGGGTCTC 59.630 50.000 0.00 0.00 45.41 3.36
14 15 2.411583 TGATGATGCACCTATGGGTCT 58.588 47.619 0.00 0.00 45.41 3.85
15 16 2.880890 GTTGATGATGCACCTATGGGTC 59.119 50.000 0.00 0.00 45.41 4.46
17 18 2.882761 CAGTTGATGATGCACCTATGGG 59.117 50.000 0.00 0.00 38.88 4.00
18 19 2.292569 GCAGTTGATGATGCACCTATGG 59.707 50.000 0.00 0.00 42.11 2.74
19 20 2.946990 TGCAGTTGATGATGCACCTATG 59.053 45.455 0.00 0.00 46.97 2.23
20 21 3.118149 TCTGCAGTTGATGATGCACCTAT 60.118 43.478 14.67 0.00 46.97 2.57
21 22 2.236893 TCTGCAGTTGATGATGCACCTA 59.763 45.455 14.67 0.00 46.97 3.08
22 23 1.003928 TCTGCAGTTGATGATGCACCT 59.996 47.619 14.67 0.00 46.97 4.00
23 24 1.456296 TCTGCAGTTGATGATGCACC 58.544 50.000 14.67 0.00 46.97 5.01
24 25 3.189910 TCTTTCTGCAGTTGATGATGCAC 59.810 43.478 14.67 0.00 46.97 4.57
26 27 4.335874 AGATCTTTCTGCAGTTGATGATGC 59.664 41.667 14.67 4.61 42.86 3.91
27 28 5.811588 CAGATCTTTCTGCAGTTGATGATG 58.188 41.667 14.67 11.81 42.79 3.07
40 41 4.840716 AGGTGCTCAATCAGATCTTTCT 57.159 40.909 0.00 0.00 0.00 2.52
41 42 5.469421 CCATAGGTGCTCAATCAGATCTTTC 59.531 44.000 0.00 0.00 0.00 2.62
42 43 5.131642 TCCATAGGTGCTCAATCAGATCTTT 59.868 40.000 0.00 0.00 0.00 2.52
43 44 4.657504 TCCATAGGTGCTCAATCAGATCTT 59.342 41.667 0.00 0.00 0.00 2.40
44 45 4.229639 TCCATAGGTGCTCAATCAGATCT 58.770 43.478 0.00 0.00 0.00 2.75
45 46 4.563168 CCTCCATAGGTGCTCAATCAGATC 60.563 50.000 0.00 0.00 38.19 2.75
46 47 3.327172 CCTCCATAGGTGCTCAATCAGAT 59.673 47.826 0.00 0.00 38.19 2.90
47 48 2.702478 CCTCCATAGGTGCTCAATCAGA 59.298 50.000 0.00 0.00 38.19 3.27
48 49 2.809665 GCCTCCATAGGTGCTCAATCAG 60.810 54.545 0.00 0.00 45.64 2.90
49 50 1.141657 GCCTCCATAGGTGCTCAATCA 59.858 52.381 0.00 0.00 45.64 2.57
50 51 1.419387 AGCCTCCATAGGTGCTCAATC 59.581 52.381 0.00 0.00 45.64 2.67
51 52 1.419387 GAGCCTCCATAGGTGCTCAAT 59.581 52.381 18.51 0.00 45.64 2.57
52 53 0.833287 GAGCCTCCATAGGTGCTCAA 59.167 55.000 18.51 0.00 45.64 3.02
53 54 0.325577 TGAGCCTCCATAGGTGCTCA 60.326 55.000 20.71 20.71 46.95 4.26
54 55 0.833287 TTGAGCCTCCATAGGTGCTC 59.167 55.000 17.36 17.36 45.64 4.26
55 56 0.835941 CTTGAGCCTCCATAGGTGCT 59.164 55.000 3.23 3.23 45.64 4.40
56 57 0.179034 CCTTGAGCCTCCATAGGTGC 60.179 60.000 0.00 0.00 45.64 5.01
57 58 0.471617 CCCTTGAGCCTCCATAGGTG 59.528 60.000 0.00 0.00 45.64 4.00
58 59 0.695803 CCCCTTGAGCCTCCATAGGT 60.696 60.000 0.00 0.00 45.64 3.08
59 60 1.422161 CCCCCTTGAGCCTCCATAGG 61.422 65.000 0.00 0.00 46.76 2.57
60 61 0.400525 TCCCCCTTGAGCCTCCATAG 60.401 60.000 0.00 0.00 0.00 2.23
61 62 0.694444 GTCCCCCTTGAGCCTCCATA 60.694 60.000 0.00 0.00 0.00 2.74
62 63 2.003548 GTCCCCCTTGAGCCTCCAT 61.004 63.158 0.00 0.00 0.00 3.41
63 64 2.610859 GTCCCCCTTGAGCCTCCA 60.611 66.667 0.00 0.00 0.00 3.86
64 65 3.787001 CGTCCCCCTTGAGCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
65 66 4.475135 GCGTCCCCCTTGAGCCTC 62.475 72.222 0.00 0.00 0.00 4.70
77 78 1.149361 TATTTCATCACGCGGCGTCC 61.149 55.000 26.96 0.00 38.32 4.79
78 79 0.043310 GTATTTCATCACGCGGCGTC 60.043 55.000 26.96 7.21 38.32 5.19
79 80 1.748647 CGTATTTCATCACGCGGCGT 61.749 55.000 24.03 24.03 42.36 5.68
80 81 1.084290 CGTATTTCATCACGCGGCG 60.084 57.895 22.36 22.36 0.00 6.46
81 82 0.229753 CTCGTATTTCATCACGCGGC 59.770 55.000 12.47 0.00 38.05 6.53
82 83 1.556564 ACTCGTATTTCATCACGCGG 58.443 50.000 12.47 0.00 38.05 6.46
83 84 3.634730 AAACTCGTATTTCATCACGCG 57.365 42.857 3.53 3.53 38.05 6.01
84 85 7.948513 AATAAAAACTCGTATTTCATCACGC 57.051 32.000 0.00 0.00 38.05 5.34
85 86 9.325150 ACAAATAAAAACTCGTATTTCATCACG 57.675 29.630 0.00 0.00 39.48 4.35
131 132 9.915629 ACTTCAACAAAATACTACAACAACAAA 57.084 25.926 0.00 0.00 0.00 2.83
166 167 9.904198 TCCTTATCACATATTTCATCACAGAAA 57.096 29.630 0.00 0.00 41.31 2.52
167 168 9.904198 TTCCTTATCACATATTTCATCACAGAA 57.096 29.630 0.00 0.00 0.00 3.02
189 190 9.787532 CGTTCAATTATCAACACAATTATTCCT 57.212 29.630 0.00 0.00 0.00 3.36
190 191 8.531530 GCGTTCAATTATCAACACAATTATTCC 58.468 33.333 0.00 0.00 0.00 3.01
191 192 8.531530 GGCGTTCAATTATCAACACAATTATTC 58.468 33.333 0.00 0.00 0.00 1.75
192 193 7.219917 CGGCGTTCAATTATCAACACAATTATT 59.780 33.333 0.00 0.00 0.00 1.40
193 194 6.690957 CGGCGTTCAATTATCAACACAATTAT 59.309 34.615 0.00 0.00 0.00 1.28
194 195 6.024664 CGGCGTTCAATTATCAACACAATTA 58.975 36.000 0.00 0.00 0.00 1.40
195 196 4.856487 CGGCGTTCAATTATCAACACAATT 59.144 37.500 0.00 0.00 0.00 2.32
196 197 4.155099 TCGGCGTTCAATTATCAACACAAT 59.845 37.500 6.85 0.00 0.00 2.71
197 198 3.498777 TCGGCGTTCAATTATCAACACAA 59.501 39.130 6.85 0.00 0.00 3.33
198 199 3.067833 TCGGCGTTCAATTATCAACACA 58.932 40.909 6.85 0.00 0.00 3.72
199 200 3.369756 TCTCGGCGTTCAATTATCAACAC 59.630 43.478 6.85 0.00 0.00 3.32
200 201 3.369756 GTCTCGGCGTTCAATTATCAACA 59.630 43.478 6.85 0.00 0.00 3.33
201 202 3.369756 TGTCTCGGCGTTCAATTATCAAC 59.630 43.478 6.85 0.00 0.00 3.18
202 203 3.369756 GTGTCTCGGCGTTCAATTATCAA 59.630 43.478 6.85 0.00 0.00 2.57
203 204 2.927477 GTGTCTCGGCGTTCAATTATCA 59.073 45.455 6.85 0.00 0.00 2.15
204 205 2.034842 CGTGTCTCGGCGTTCAATTATC 60.035 50.000 6.85 0.00 35.71 1.75
205 206 1.924524 CGTGTCTCGGCGTTCAATTAT 59.075 47.619 6.85 0.00 35.71 1.28
206 207 1.342555 CGTGTCTCGGCGTTCAATTA 58.657 50.000 6.85 0.00 35.71 1.40
207 208 2.150424 CGTGTCTCGGCGTTCAATT 58.850 52.632 6.85 0.00 35.71 2.32
208 209 3.856508 CGTGTCTCGGCGTTCAAT 58.143 55.556 6.85 0.00 35.71 2.57
217 218 2.355363 TGGTTTCGCCGTGTCTCG 60.355 61.111 0.00 0.00 41.21 4.04
218 219 2.654912 CGTGGTTTCGCCGTGTCTC 61.655 63.158 0.00 0.00 41.21 3.36
219 220 2.660552 CGTGGTTTCGCCGTGTCT 60.661 61.111 0.00 0.00 41.21 3.41
227 228 0.303493 CCATATTCGGCGTGGTTTCG 59.697 55.000 6.85 0.00 0.00 3.46
228 229 0.661020 CCCATATTCGGCGTGGTTTC 59.339 55.000 6.85 0.00 0.00 2.78
229 230 1.381165 GCCCATATTCGGCGTGGTTT 61.381 55.000 6.85 0.00 36.47 3.27
230 231 1.822186 GCCCATATTCGGCGTGGTT 60.822 57.895 6.85 0.00 36.47 3.67
231 232 2.203153 GCCCATATTCGGCGTGGT 60.203 61.111 6.85 0.00 36.47 4.16
236 237 2.633488 GAGAATAGGCCCATATTCGGC 58.367 52.381 15.47 10.24 43.79 5.54
237 238 2.893637 CGAGAATAGGCCCATATTCGG 58.106 52.381 15.47 10.10 43.79 4.30
238 239 2.093973 AGCGAGAATAGGCCCATATTCG 60.094 50.000 15.47 13.38 43.79 3.34
239 240 3.055819 TGAGCGAGAATAGGCCCATATTC 60.056 47.826 14.20 14.20 40.83 1.75
240 241 2.906389 TGAGCGAGAATAGGCCCATATT 59.094 45.455 0.00 0.00 0.00 1.28
241 242 2.540383 TGAGCGAGAATAGGCCCATAT 58.460 47.619 0.00 0.00 0.00 1.78
242 243 2.009681 TGAGCGAGAATAGGCCCATA 57.990 50.000 0.00 0.00 0.00 2.74
243 244 1.356124 ATGAGCGAGAATAGGCCCAT 58.644 50.000 0.00 0.00 0.00 4.00
244 245 2.009681 TATGAGCGAGAATAGGCCCA 57.990 50.000 0.00 0.00 0.00 5.36
245 246 2.419297 CCATATGAGCGAGAATAGGCCC 60.419 54.545 3.65 0.00 0.00 5.80
246 247 2.419297 CCCATATGAGCGAGAATAGGCC 60.419 54.545 3.65 0.00 0.00 5.19
247 248 2.898705 CCCATATGAGCGAGAATAGGC 58.101 52.381 3.65 0.00 0.00 3.93
248 249 2.419297 GGCCCATATGAGCGAGAATAGG 60.419 54.545 3.65 0.00 0.00 2.57
249 250 2.736719 CGGCCCATATGAGCGAGAATAG 60.737 54.545 3.65 0.00 0.00 1.73
250 251 1.204704 CGGCCCATATGAGCGAGAATA 59.795 52.381 3.65 0.00 0.00 1.75
251 252 0.036952 CGGCCCATATGAGCGAGAAT 60.037 55.000 3.65 0.00 0.00 2.40
252 253 1.367471 CGGCCCATATGAGCGAGAA 59.633 57.895 3.65 0.00 0.00 2.87
253 254 1.399744 AACGGCCCATATGAGCGAGA 61.400 55.000 3.65 0.00 0.00 4.04
254 255 0.532862 AAACGGCCCATATGAGCGAG 60.533 55.000 3.65 3.02 0.00 5.03
255 256 0.753867 TAAACGGCCCATATGAGCGA 59.246 50.000 3.65 0.00 0.00 4.93
256 257 1.808411 ATAAACGGCCCATATGAGCG 58.192 50.000 3.65 1.96 0.00 5.03
257 258 2.159627 CGAATAAACGGCCCATATGAGC 59.840 50.000 3.65 1.53 0.00 4.26
258 259 2.159627 GCGAATAAACGGCCCATATGAG 59.840 50.000 3.65 0.00 0.00 2.90
259 260 2.147958 GCGAATAAACGGCCCATATGA 58.852 47.619 3.65 0.00 0.00 2.15
260 261 2.611974 GCGAATAAACGGCCCATATG 57.388 50.000 0.00 0.00 0.00 1.78
268 269 2.446282 CCAATTTCGGCGAATAAACGG 58.554 47.619 24.33 15.13 0.00 4.44
269 270 2.446282 CCCAATTTCGGCGAATAAACG 58.554 47.619 24.33 10.19 0.00 3.60
270 271 2.190161 GCCCAATTTCGGCGAATAAAC 58.810 47.619 24.33 7.58 36.47 2.01
271 272 2.570442 GCCCAATTTCGGCGAATAAA 57.430 45.000 24.33 9.26 36.47 1.40
279 280 0.318120 ACTTTGCAGCCCAATTTCGG 59.682 50.000 0.00 0.00 32.49 4.30
280 281 1.421382 CACTTTGCAGCCCAATTTCG 58.579 50.000 0.00 0.00 32.49 3.46
281 282 1.608801 CCCACTTTGCAGCCCAATTTC 60.609 52.381 0.00 0.00 32.49 2.17
282 283 0.397564 CCCACTTTGCAGCCCAATTT 59.602 50.000 0.00 0.00 32.49 1.82
283 284 2.060370 CCCACTTTGCAGCCCAATT 58.940 52.632 0.00 0.00 32.49 2.32
284 285 2.586293 GCCCACTTTGCAGCCCAAT 61.586 57.895 0.00 0.00 32.49 3.16
285 286 3.233231 GCCCACTTTGCAGCCCAA 61.233 61.111 0.00 0.00 0.00 4.12
288 289 2.115734 AATTGGCCCACTTTGCAGCC 62.116 55.000 0.00 5.48 45.96 4.85
289 290 0.250424 AAATTGGCCCACTTTGCAGC 60.250 50.000 0.00 0.00 0.00 5.25
290 291 1.799544 GAAATTGGCCCACTTTGCAG 58.200 50.000 3.51 0.00 0.00 4.41
291 292 0.033228 CGAAATTGGCCCACTTTGCA 59.967 50.000 3.51 0.00 0.00 4.08
292 293 0.670239 CCGAAATTGGCCCACTTTGC 60.670 55.000 3.51 0.00 0.00 3.68
293 294 3.512978 CCGAAATTGGCCCACTTTG 57.487 52.632 3.51 0.00 0.00 2.77
302 303 3.825611 CCCAGGCGCCGAAATTGG 61.826 66.667 23.20 22.32 0.00 3.16
303 304 3.825611 CCCCAGGCGCCGAAATTG 61.826 66.667 23.20 13.64 0.00 2.32
314 315 4.437587 CTCCAGCTTGCCCCCAGG 62.438 72.222 0.00 0.00 0.00 4.45
315 316 4.437587 CCTCCAGCTTGCCCCCAG 62.438 72.222 0.00 0.00 0.00 4.45
321 322 4.742201 TCGTCGCCTCCAGCTTGC 62.742 66.667 0.00 0.00 40.39 4.01
322 323 2.811317 GTCGTCGCCTCCAGCTTG 60.811 66.667 0.00 0.00 40.39 4.01
323 324 2.992114 AGTCGTCGCCTCCAGCTT 60.992 61.111 0.00 0.00 40.39 3.74
324 325 3.753434 CAGTCGTCGCCTCCAGCT 61.753 66.667 0.00 0.00 40.39 4.24
325 326 4.803426 CCAGTCGTCGCCTCCAGC 62.803 72.222 0.00 0.00 38.52 4.85
326 327 4.135153 CCCAGTCGTCGCCTCCAG 62.135 72.222 0.00 0.00 0.00 3.86
333 334 3.342627 TTTTGCGCCCAGTCGTCG 61.343 61.111 4.18 0.00 0.00 5.12
334 335 2.251371 GTTTTGCGCCCAGTCGTC 59.749 61.111 4.18 0.00 0.00 4.20
335 336 3.284449 GGTTTTGCGCCCAGTCGT 61.284 61.111 4.18 0.00 0.00 4.34
336 337 4.383602 CGGTTTTGCGCCCAGTCG 62.384 66.667 4.18 0.00 0.00 4.18
337 338 4.700365 GCGGTTTTGCGCCCAGTC 62.700 66.667 4.18 0.00 0.00 3.51
343 344 3.810896 CTAGGGGCGGTTTTGCGC 61.811 66.667 0.00 0.00 46.11 6.09
344 345 2.359478 ACTAGGGGCGGTTTTGCG 60.359 61.111 0.00 0.00 35.06 4.85
345 346 2.989881 GCACTAGGGGCGGTTTTGC 61.990 63.158 0.00 0.00 0.00 3.68
346 347 2.340328 GGCACTAGGGGCGGTTTTG 61.340 63.158 1.35 0.00 0.00 2.44
347 348 2.035155 GGCACTAGGGGCGGTTTT 59.965 61.111 1.35 0.00 0.00 2.43
353 354 1.400530 ATACACTCGGCACTAGGGGC 61.401 60.000 8.87 8.87 0.00 5.80
354 355 0.674534 GATACACTCGGCACTAGGGG 59.325 60.000 0.00 0.00 0.00 4.79
355 356 0.311165 CGATACACTCGGCACTAGGG 59.689 60.000 0.00 0.00 43.82 3.53
356 357 3.847621 CGATACACTCGGCACTAGG 57.152 57.895 0.00 0.00 43.82 3.02
365 366 2.353607 CGAGCCGGCGATACACTC 60.354 66.667 23.20 10.39 0.00 3.51
366 367 4.570663 GCGAGCCGGCGATACACT 62.571 66.667 23.20 0.00 0.00 3.55
384 385 0.843984 ATACAAATCGTCCCCTGGGG 59.156 55.000 26.87 26.87 46.11 4.96
385 386 1.967319 CATACAAATCGTCCCCTGGG 58.033 55.000 5.50 5.50 0.00 4.45
386 387 1.308998 GCATACAAATCGTCCCCTGG 58.691 55.000 0.00 0.00 0.00 4.45
387 388 0.937304 CGCATACAAATCGTCCCCTG 59.063 55.000 0.00 0.00 0.00 4.45
388 389 0.539986 ACGCATACAAATCGTCCCCT 59.460 50.000 0.00 0.00 0.00 4.79
389 390 1.862827 GTACGCATACAAATCGTCCCC 59.137 52.381 0.00 0.00 37.61 4.81
390 391 2.538449 CAGTACGCATACAAATCGTCCC 59.462 50.000 0.00 0.00 37.61 4.46
391 392 2.538449 CCAGTACGCATACAAATCGTCC 59.462 50.000 0.00 0.00 37.61 4.79
392 393 2.538449 CCCAGTACGCATACAAATCGTC 59.462 50.000 0.00 0.00 37.61 4.20
393 394 2.546778 CCCAGTACGCATACAAATCGT 58.453 47.619 0.00 0.00 39.88 3.73
394 395 1.864711 CCCCAGTACGCATACAAATCG 59.135 52.381 0.00 0.00 33.30 3.34
395 396 2.218603 CCCCCAGTACGCATACAAATC 58.781 52.381 0.00 0.00 33.30 2.17
396 397 2.341846 CCCCCAGTACGCATACAAAT 57.658 50.000 0.00 0.00 33.30 2.32
397 398 3.865477 CCCCCAGTACGCATACAAA 57.135 52.632 0.00 0.00 33.30 2.83
424 425 0.249657 CTCGTAAGGGCATCTCCAGC 60.250 60.000 0.00 0.00 36.21 4.85
425 426 3.976339 CTCGTAAGGGCATCTCCAG 57.024 57.895 0.00 0.00 36.21 3.86
434 435 1.104630 GGGAGACAGACTCGTAAGGG 58.895 60.000 0.00 0.00 45.76 3.95
435 436 1.746220 CAGGGAGACAGACTCGTAAGG 59.254 57.143 0.00 0.00 45.76 2.69
436 437 2.438411 ACAGGGAGACAGACTCGTAAG 58.562 52.381 0.00 0.00 45.76 2.34
441 442 1.096416 CCGTACAGGGAGACAGACTC 58.904 60.000 0.00 0.00 44.24 3.36
453 454 1.371758 CCGCCGATGATCCGTACAG 60.372 63.158 0.00 0.00 0.00 2.74
454 455 2.725641 CCGCCGATGATCCGTACA 59.274 61.111 0.00 0.00 0.00 2.90
468 469 2.030540 TCCGTACATAGATAAGTGCCGC 60.031 50.000 0.00 0.00 0.00 6.53
505 506 5.646793 GCTGCATATCATCCACTCATGTAAT 59.353 40.000 0.00 0.00 0.00 1.89
527 528 1.513158 CACTGCTAGCTGTACGGCT 59.487 57.895 30.90 30.90 45.29 5.52
561 562 1.528292 GAGCTACCAGGGCGATCGAT 61.528 60.000 21.57 0.00 34.52 3.59
562 563 2.123854 AGCTACCAGGGCGATCGA 60.124 61.111 21.57 0.00 34.52 3.59
563 564 2.336809 GAGCTACCAGGGCGATCG 59.663 66.667 11.69 11.69 34.52 3.69
564 565 1.528292 ATCGAGCTACCAGGGCGATC 61.528 60.000 0.00 0.00 37.11 3.69
565 566 1.528292 GATCGAGCTACCAGGGCGAT 61.528 60.000 4.12 4.12 43.48 4.58
566 567 2.123854 ATCGAGCTACCAGGGCGA 60.124 61.111 0.00 0.00 35.32 5.54
567 568 2.336809 GATCGAGCTACCAGGGCG 59.663 66.667 0.00 0.00 34.52 6.13
568 569 2.093537 CTGGATCGAGCTACCAGGGC 62.094 65.000 17.29 0.00 44.96 5.19
569 570 2.045280 CTGGATCGAGCTACCAGGG 58.955 63.158 17.29 0.00 44.96 4.45
572 573 7.720074 CCTATAATATACTGGATCGAGCTACCA 59.280 40.741 4.41 2.02 0.00 3.25
573 574 7.720515 ACCTATAATATACTGGATCGAGCTACC 59.279 40.741 4.41 0.00 0.00 3.18
574 575 8.680039 ACCTATAATATACTGGATCGAGCTAC 57.320 38.462 4.41 0.00 0.00 3.58
660 664 2.079158 CTGCTTTCGATCTTCCTGCAA 58.921 47.619 0.00 0.00 0.00 4.08
665 669 0.541863 TCCCCTGCTTTCGATCTTCC 59.458 55.000 0.00 0.00 0.00 3.46
683 687 2.034104 GGTATGGACCGACCCTTTTC 57.966 55.000 4.32 0.00 35.52 2.29
711 715 3.828451 TCAATTTCCTGAGAAAGGCTTGG 59.172 43.478 0.00 0.00 46.92 3.61
713 717 3.509184 GCTCAATTTCCTGAGAAAGGCTT 59.491 43.478 4.81 0.00 46.92 4.35
734 738 1.468914 CGAAGCTTACCCTTTCTTGGC 59.531 52.381 0.00 0.00 0.00 4.52
748 752 5.070446 TGATCCTGGAATATTGTACGAAGCT 59.930 40.000 0.00 0.00 0.00 3.74
853 857 2.429971 GCTAGTACTTGTACCCCACTCC 59.570 54.545 0.00 0.00 0.00 3.85
873 877 3.662247 AGAAGCACGGGTATACTATGC 57.338 47.619 14.73 14.73 36.52 3.14
874 878 4.989168 GGAAAGAAGCACGGGTATACTATG 59.011 45.833 2.25 0.46 0.00 2.23
875 879 4.652421 TGGAAAGAAGCACGGGTATACTAT 59.348 41.667 2.25 0.00 0.00 2.12
885 904 2.748461 TTCGTTTGGAAAGAAGCACG 57.252 45.000 0.00 0.00 0.00 5.34
907 926 0.987294 ATGAGGAGTTGGTCACCTGG 59.013 55.000 0.00 0.00 37.26 4.45
932 977 6.094061 GGCTAACTGGAGATATTTACTAGCG 58.906 44.000 0.00 0.00 32.00 4.26
941 986 0.977395 GGCCGGCTAACTGGAGATAT 59.023 55.000 28.56 0.00 46.41 1.63
942 987 0.397957 TGGCCGGCTAACTGGAGATA 60.398 55.000 28.56 0.00 46.41 1.98
970 1016 1.270199 CCGGAGATTCAGATGGCAGAG 60.270 57.143 0.00 0.00 0.00 3.35
971 1017 0.755079 CCGGAGATTCAGATGGCAGA 59.245 55.000 0.00 0.00 0.00 4.26
972 1018 0.467384 ACCGGAGATTCAGATGGCAG 59.533 55.000 9.46 0.00 0.00 4.85
973 1019 0.465705 GACCGGAGATTCAGATGGCA 59.534 55.000 9.46 0.00 0.00 4.92
974 1020 0.598680 CGACCGGAGATTCAGATGGC 60.599 60.000 9.46 0.00 0.00 4.40
992 1050 2.103538 CCCGGACCATGACGTACG 59.896 66.667 15.01 15.01 39.91 3.67
1033 1091 1.142965 GCCGGCTTGTGGTGTTTTT 59.857 52.632 22.15 0.00 0.00 1.94
1209 1267 6.721318 AGATAGAGAGACAGACAGAAAGACT 58.279 40.000 0.00 0.00 0.00 3.24
1211 1269 8.713971 AGATAGATAGAGAGACAGACAGAAAGA 58.286 37.037 0.00 0.00 0.00 2.52
1250 1308 9.255029 AGCCCATAAAGTATTGAAAGTTTGTAT 57.745 29.630 0.00 0.00 0.00 2.29
1251 1309 8.644374 AGCCCATAAAGTATTGAAAGTTTGTA 57.356 30.769 0.00 0.00 0.00 2.41
1252 1310 7.539034 AGCCCATAAAGTATTGAAAGTTTGT 57.461 32.000 0.00 0.00 0.00 2.83
1255 1313 9.474313 TGATTAGCCCATAAAGTATTGAAAGTT 57.526 29.630 0.00 0.00 0.00 2.66
1383 1463 2.114616 CTAGGAAGACACATCCAGCCT 58.885 52.381 0.00 0.00 39.55 4.58
1403 1483 7.339466 ACAGTGGGTATTTGGATCTTGTATTTC 59.661 37.037 0.00 0.00 0.00 2.17
1466 1782 1.749063 CCCGGTTCTAGATTTTTGGCC 59.251 52.381 0.00 0.00 0.00 5.36
1472 1788 0.837940 GGCTCCCCGGTTCTAGATTT 59.162 55.000 0.00 0.00 0.00 2.17
1490 1811 4.821805 TCTGTTCTCTTAAGGCAAAGTTGG 59.178 41.667 1.85 0.00 0.00 3.77
1494 1815 5.618640 GCATGTCTGTTCTCTTAAGGCAAAG 60.619 44.000 1.85 0.00 0.00 2.77
1498 1819 3.604582 AGCATGTCTGTTCTCTTAAGGC 58.395 45.455 1.85 0.00 0.00 4.35
1499 1820 6.214191 TCTAGCATGTCTGTTCTCTTAAGG 57.786 41.667 1.85 0.00 0.00 2.69
1502 1823 7.996066 AGTCTATCTAGCATGTCTGTTCTCTTA 59.004 37.037 0.00 0.00 0.00 2.10
1508 1829 6.975196 ATCAGTCTATCTAGCATGTCTGTT 57.025 37.500 0.00 0.00 0.00 3.16
1519 1840 9.102757 GATGAGTTTGCAAAATCAGTCTATCTA 57.897 33.333 36.04 17.49 44.75 1.98
1570 1891 9.400208 TGGGTGATGGAGACCTAAATTAATATA 57.600 33.333 0.00 0.00 33.58 0.86
1593 1918 6.874288 TTAAATTTGGCTCAAAACATTGGG 57.126 33.333 0.00 0.00 36.90 4.12
1603 1928 7.961351 TGAAGAAAAGGATTAAATTTGGCTCA 58.039 30.769 0.00 0.00 0.00 4.26
1620 1945 4.343814 GGTTCTTGGGTGGAATGAAGAAAA 59.656 41.667 0.00 0.00 36.46 2.29
1855 2189 9.561069 GAAATTCCAGCTCATCCTTTTACTATA 57.439 33.333 0.00 0.00 0.00 1.31
1895 2229 6.155910 CCACCAGACCTGCTTATATCTCATAT 59.844 42.308 0.00 0.00 0.00 1.78
2001 2342 7.156876 TCAATATGTGATGTTTTGGTTCCTC 57.843 36.000 0.00 0.00 0.00 3.71
2052 2393 1.267732 GCGCATGCACACTATGAAGTC 60.268 52.381 19.57 0.00 42.15 3.01
2206 2550 7.815840 TGGACAAAGAAAATAATGTGACTCA 57.184 32.000 0.00 0.00 0.00 3.41
2224 2568 8.867097 AGTCAGTAGTAGAAATAAGTTGGACAA 58.133 33.333 0.00 0.00 0.00 3.18
2247 2592 6.619801 ACCACAGAAGTATTTCACAAAGTC 57.380 37.500 0.44 0.00 35.70 3.01
2385 2732 9.614792 AGTTTATTTGTCTAATGATCCCTACAC 57.385 33.333 0.00 0.00 0.00 2.90
2416 2763 3.003480 GGAAAGATGTGTGGACTAGTGC 58.997 50.000 7.56 7.56 0.00 4.40
2631 3026 2.733956 TGGATATGGGGTGCAGTTTTC 58.266 47.619 0.00 0.00 0.00 2.29
2640 3035 6.493166 CATGGTTATACAATGGATATGGGGT 58.507 40.000 0.00 0.00 0.00 4.95
2706 3101 6.415573 AGTTTTTGTTGAAGAGAGGTACACT 58.584 36.000 0.00 0.00 0.00 3.55
2890 3286 7.335422 ACTGATCAAAAGTCATACCTTAGCTTG 59.665 37.037 0.00 0.00 0.00 4.01
2971 3367 4.715527 ACAAGTATACGAAGGACAGACC 57.284 45.455 0.00 0.00 39.35 3.85
2997 3395 2.428925 GCATGGCATGAAGGTGGGG 61.429 63.158 30.69 1.23 0.00 4.96
3051 3449 9.999660 GAGAAGGTATATTTCTAAAGTTAGGGG 57.000 37.037 3.30 0.00 35.14 4.79
3111 3509 0.627451 AGGGCTCATTCTGGCATGAA 59.373 50.000 0.00 0.00 32.63 2.57
3156 3554 4.276678 CGGCAATGGATAATCACATCAAGT 59.723 41.667 0.00 0.00 0.00 3.16
3160 3558 2.095059 GCCGGCAATGGATAATCACATC 60.095 50.000 24.80 0.00 0.00 3.06
3201 3599 1.079405 GGGCAGCAGCACGTTACTA 60.079 57.895 2.65 0.00 44.61 1.82
3284 3682 7.500141 AGTGCACCAAAACAATAGATCTTTTT 58.500 30.769 14.63 0.00 0.00 1.94
3289 3687 5.627499 TGAGTGCACCAAAACAATAGATC 57.373 39.130 14.63 0.00 0.00 2.75
3303 3701 7.582435 AATACTACGCATTATATGAGTGCAC 57.418 36.000 9.40 9.40 43.22 4.57
3504 3903 2.205911 GCTTGGCTTAGAAGACGATCC 58.794 52.381 0.00 0.00 36.62 3.36
3545 3944 3.870559 CCCATATAGGTACTTCCCCACT 58.129 50.000 0.00 0.00 41.75 4.00
3557 3956 2.169352 CTCAAGATCGGGCCCATATAGG 59.831 54.545 24.92 3.75 37.03 2.57
3587 3986 4.286032 ACTCTCACAATAAAGCCTGTACCA 59.714 41.667 0.00 0.00 0.00 3.25
3589 3988 4.631813 CCACTCTCACAATAAAGCCTGTAC 59.368 45.833 0.00 0.00 0.00 2.90
3600 3999 5.630121 TGTTTTACATCCCACTCTCACAAT 58.370 37.500 0.00 0.00 0.00 2.71
3602 4001 4.698201 TGTTTTACATCCCACTCTCACA 57.302 40.909 0.00 0.00 0.00 3.58
3639 4038 8.829612 TGTAGAGCAACACATGATATGTTATTG 58.170 33.333 0.00 9.65 42.70 1.90
3648 4047 3.866651 GGTCTGTAGAGCAACACATGAT 58.133 45.455 0.00 0.00 41.81 2.45
3692 4217 8.970859 AGATGTTGGAAATGTTATCTCCTTAG 57.029 34.615 0.00 0.00 0.00 2.18
3739 4264 8.194769 TCAAGTGAGTGCGTTAGATATCATTAA 58.805 33.333 5.32 0.00 0.00 1.40
3861 4387 6.487331 ACAAACTATATTGTCGTGGGTTTTGA 59.513 34.615 0.00 0.00 39.23 2.69
3971 4497 6.127647 CCTCTGCTTGCCAAAACTATAAATGA 60.128 38.462 0.00 0.00 0.00 2.57
4091 4617 7.760794 GCACATGAAAAATCAGTATCCATTTCA 59.239 33.333 0.00 0.00 40.01 2.69
4173 4699 8.082334 AGCGCAAATGTGTAATTATTGTTTTT 57.918 26.923 11.47 0.00 0.00 1.94
4182 4708 5.868801 AGCAAATTAGCGCAAATGTGTAATT 59.131 32.000 11.47 6.45 40.15 1.40
4185 4711 4.433186 AGCAAATTAGCGCAAATGTGTA 57.567 36.364 11.47 0.00 40.15 2.90
4196 4723 5.291858 GCCTGAAATGGTTTAGCAAATTAGC 59.708 40.000 0.00 0.00 0.00 3.09
4222 4749 5.337491 GCCAGATAAATGTTGTCCCAACAAT 60.337 40.000 13.18 3.07 46.58 2.71
4345 4872 5.804639 TGATTAGTGCCACTACAAAGATGT 58.195 37.500 3.52 0.00 43.74 3.06
4478 5073 4.749598 GCTAATTGGAAATAAAATGGGCCG 59.250 41.667 0.00 0.00 0.00 6.13
4601 5196 3.067742 TCTCTTATACCTACGCACCTTGC 59.932 47.826 0.00 0.00 40.69 4.01
4766 5361 5.289675 CACTGGCTAGAAGAACTTGTAATCG 59.710 44.000 3.17 0.00 0.00 3.34
4854 5449 3.721087 TCTGGTTCCTCATCCTTTTCC 57.279 47.619 0.00 0.00 0.00 3.13
4859 5454 2.507471 GGTGATTCTGGTTCCTCATCCT 59.493 50.000 0.00 0.00 0.00 3.24
4954 5549 2.466846 TGCCCTCTGTGTTAGCTCATA 58.533 47.619 0.00 0.00 0.00 2.15
4957 5552 1.443802 GTTGCCCTCTGTGTTAGCTC 58.556 55.000 0.00 0.00 0.00 4.09
5272 5880 9.440773 GATATGAATGCATGTTTATGGAGTCTA 57.559 33.333 0.00 0.00 45.93 2.59
5331 5939 1.148310 CACGGTGTGCTAGTTCCTTG 58.852 55.000 0.00 0.00 0.00 3.61
5339 5947 0.966875 ATACCCGACACGGTGTGCTA 60.967 55.000 20.06 2.67 46.80 3.49
5401 6015 5.929415 GCGGTGAAATTGGGAATTTTCTTAA 59.071 36.000 0.00 0.00 40.97 1.85
5403 6017 4.040339 AGCGGTGAAATTGGGAATTTTCTT 59.960 37.500 0.00 0.00 40.97 2.52
5506 6120 2.030363 TCGTAGGTTTTGCAAGCCAATG 60.030 45.455 19.81 10.99 32.49 2.82
5521 6135 6.183309 TGATGATCTCAATATCGTCGTAGG 57.817 41.667 0.00 0.00 42.45 3.18
5523 6137 9.937175 GATAATGATGATCTCAATATCGTCGTA 57.063 33.333 11.30 0.00 42.45 3.43
5524 6138 8.462016 TGATAATGATGATCTCAATATCGTCGT 58.538 33.333 16.76 0.00 44.58 4.34
5525 6139 8.847444 TGATAATGATGATCTCAATATCGTCG 57.153 34.615 16.76 0.00 44.58 5.12
5564 6179 5.690865 ACCTGTCTTTGTGGTGATTTTCTA 58.309 37.500 0.00 0.00 32.16 2.10
5637 6252 7.782897 TGGGATGTCTAGTCCTCTAAATATG 57.217 40.000 0.00 0.00 36.00 1.78
5743 6909 2.117206 GGAATGCCACCACCACCA 59.883 61.111 0.00 0.00 0.00 4.17
5774 6940 5.582665 GCTGGTCGATCAAATTCTAGAAGTT 59.417 40.000 12.23 12.23 0.00 2.66
5775 6941 5.112686 GCTGGTCGATCAAATTCTAGAAGT 58.887 41.667 11.53 5.33 0.00 3.01
5828 6994 1.826921 CCATGCCAAGCAGCCTAGG 60.827 63.158 3.67 3.67 43.65 3.02
5831 6997 3.976490 ATGCCATGCCAAGCAGCCT 62.976 57.895 0.99 0.00 43.65 4.58
5848 7014 1.217057 ATCCTGGGGCAAGACACCAT 61.217 55.000 0.00 0.00 33.07 3.55
5877 7043 4.641645 CCACAGCCTCACGCCCAA 62.642 66.667 0.00 0.00 38.78 4.12
5927 7093 0.609957 CACCAAATCAGGCAGGCAGA 60.610 55.000 0.00 0.00 0.00 4.26
5928 7094 0.896940 ACACCAAATCAGGCAGGCAG 60.897 55.000 0.00 0.00 0.00 4.85
5931 7097 1.252904 CCCACACCAAATCAGGCAGG 61.253 60.000 0.00 0.00 0.00 4.85
5937 7103 2.988684 GCCGCCCACACCAAATCA 60.989 61.111 0.00 0.00 0.00 2.57
5938 7104 3.758931 GGCCGCCCACACCAAATC 61.759 66.667 0.00 0.00 0.00 2.17
5979 7146 2.435059 GAGAAGTCCAGCCCACGC 60.435 66.667 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.