Multiple sequence alignment - TraesCS1B01G057700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G057700 chr1B 100.000 2435 0 0 1 2435 39806787 39809221 0.000000e+00 4497.0
1 TraesCS1B01G057700 chr1B 94.598 759 41 0 701 1459 16224490 16223732 0.000000e+00 1175.0
2 TraesCS1B01G057700 chr1B 87.613 993 103 7 701 1687 39740474 39741452 0.000000e+00 1134.0
3 TraesCS1B01G057700 chr1B 97.477 436 10 1 1 435 23775691 23776126 0.000000e+00 743.0
4 TraesCS1B01G057700 chr1B 91.324 438 35 3 1 436 39732953 39733389 1.610000e-166 595.0
5 TraesCS1B01G057700 chr1B 91.475 434 33 3 4 436 23598182 23598612 5.800000e-166 593.0
6 TraesCS1B01G057700 chr1B 85.271 516 42 19 1944 2432 16223289 16222781 3.610000e-138 501.0
7 TraesCS1B01G057700 chr1B 86.076 395 43 8 1566 1955 23599389 23599776 4.840000e-112 414.0
8 TraesCS1B01G057700 chr1B 85.570 395 45 8 1566 1955 23898165 23898552 1.050000e-108 403.0
9 TraesCS1B01G057700 chr1B 77.183 504 65 20 1944 2435 23777247 23777712 5.200000e-62 248.0
10 TraesCS1B01G057700 chr1B 85.597 243 17 9 2211 2435 39816846 39817088 3.130000e-59 239.0
11 TraesCS1B01G057700 chr1B 93.333 45 3 0 1525 1569 16402091 16402135 1.560000e-07 67.6
12 TraesCS1B01G057700 chr1D 93.973 1261 64 9 701 1955 10763159 10761905 0.000000e+00 1897.0
13 TraesCS1B01G057700 chr1D 93.740 1262 66 10 701 1955 10844996 10846251 0.000000e+00 1881.0
14 TraesCS1B01G057700 chr1D 96.179 759 29 0 701 1459 10774619 10773861 0.000000e+00 1242.0
15 TraesCS1B01G057700 chr1D 88.591 1008 92 10 701 1687 10836964 10837969 0.000000e+00 1203.0
16 TraesCS1B01G057700 chr1D 94.279 437 22 3 1 436 10763582 10763148 0.000000e+00 665.0
17 TraesCS1B01G057700 chr1D 93.135 437 23 5 1 436 10844577 10845007 3.420000e-178 634.0
18 TraesCS1B01G057700 chr1D 92.027 439 31 3 1 436 10836538 10836975 4.450000e-172 614.0
19 TraesCS1B01G057700 chr1D 87.251 502 43 12 1946 2432 10773403 10772908 9.840000e-154 553.0
20 TraesCS1B01G057700 chr1D 86.602 515 40 14 1944 2435 10932154 10932662 2.130000e-150 542.0
21 TraesCS1B01G057700 chr1D 86.160 513 40 19 1949 2435 10761854 10761347 2.140000e-145 525.0
22 TraesCS1B01G057700 chr1D 85.630 341 36 8 1973 2310 10846313 10846643 1.790000e-91 346.0
23 TraesCS1B01G057700 chr1D 93.074 231 14 2 1685 1913 10838249 10838019 1.080000e-88 337.0
24 TraesCS1B01G057700 chr1D 88.189 127 14 1 2310 2435 10846714 10846840 1.510000e-32 150.0
25 TraesCS1B01G057700 chr1D 87.500 64 7 1 1507 1570 10837821 10837883 3.360000e-09 73.1
26 TraesCS1B01G057700 chr1A 89.367 1279 104 18 701 1955 13256341 13257611 0.000000e+00 1580.0
27 TraesCS1B01G057700 chr1A 96.163 860 32 1 701 1559 22790084 22789225 0.000000e+00 1404.0
28 TraesCS1B01G057700 chr1A 95.652 759 33 0 701 1459 13008739 13007981 0.000000e+00 1219.0
29 TraesCS1B01G057700 chr1A 95.389 759 35 0 701 1459 13213556 13214314 0.000000e+00 1208.0
30 TraesCS1B01G057700 chr1A 95.125 759 37 0 701 1459 13230168 13230926 0.000000e+00 1197.0
31 TraesCS1B01G057700 chr1A 92.483 439 27 6 1 436 13213132 13213567 7.390000e-175 623.0
32 TraesCS1B01G057700 chr1A 92.273 440 27 7 1 436 13009164 13008728 3.440000e-173 617.0
33 TraesCS1B01G057700 chr1A 92.273 440 27 7 1 436 13229743 13230179 3.440000e-173 617.0
34 TraesCS1B01G057700 chr1A 88.755 498 39 10 1946 2435 13214772 13215260 5.800000e-166 593.0
35 TraesCS1B01G057700 chr1A 85.185 513 44 17 1946 2432 13007696 13007190 4.680000e-137 497.0
36 TraesCS1B01G057700 chr1A 84.466 515 50 14 1944 2435 13274287 13274794 4.710000e-132 481.0
37 TraesCS1B01G057700 chr1A 85.084 476 42 14 1985 2435 22759771 22759300 2.210000e-125 459.0
38 TraesCS1B01G057700 chr1A 86.700 406 39 9 1558 1955 13230941 13231339 1.030000e-118 436.0
39 TraesCS1B01G057700 chr1A 86.600 403 42 8 1558 1955 13214329 13214724 3.720000e-118 435.0
40 TraesCS1B01G057700 chr1A 85.819 409 45 8 1553 1955 22778886 22778485 2.890000e-114 422.0
41 TraesCS1B01G057700 chr1A 82.294 497 53 22 1944 2435 13257657 13258123 4.880000e-107 398.0
42 TraesCS1B01G057700 chr1A 87.987 308 27 5 1945 2245 13231381 13231685 2.980000e-94 355.0
43 TraesCS1B01G057700 chr1A 89.256 121 12 1 2316 2435 22778138 22778018 1.510000e-32 150.0
44 TraesCS1B01G057700 chr1A 91.111 90 6 1 1483 1570 22814669 22814580 1.180000e-23 121.0
45 TraesCS1B01G057700 chr4A 98.587 283 3 1 426 707 580484461 580484179 1.300000e-137 499.0
46 TraesCS1B01G057700 chr4A 98.566 279 4 0 427 705 3386221 3385943 6.050000e-136 494.0
47 TraesCS1B01G057700 chr4A 98.221 281 5 0 424 704 656478078 656477798 2.180000e-135 492.0
48 TraesCS1B01G057700 chr3A 98.925 279 3 0 426 704 646678600 646678878 1.300000e-137 499.0
49 TraesCS1B01G057700 chr3A 97.213 287 8 0 425 711 16140384 16140670 1.010000e-133 486.0
50 TraesCS1B01G057700 chr5B 98.921 278 3 0 427 704 505567550 505567827 4.680000e-137 497.0
51 TraesCS1B01G057700 chr2A 98.227 282 5 0 423 704 80232552 80232271 6.050000e-136 494.0
52 TraesCS1B01G057700 chr3B 97.241 290 5 3 427 715 794632356 794632643 2.810000e-134 488.0
53 TraesCS1B01G057700 chr7B 97.222 288 6 2 419 704 38684282 38683995 1.010000e-133 486.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G057700 chr1B 39806787 39809221 2434 False 4497.000000 4497 100.000000 1 2435 1 chr1B.!!$F5 2434
1 TraesCS1B01G057700 chr1B 39740474 39741452 978 False 1134.000000 1134 87.613000 701 1687 1 chr1B.!!$F4 986
2 TraesCS1B01G057700 chr1B 16222781 16224490 1709 True 838.000000 1175 89.934500 701 2432 2 chr1B.!!$R1 1731
3 TraesCS1B01G057700 chr1B 23598182 23599776 1594 False 503.500000 593 88.775500 4 1955 2 chr1B.!!$F7 1951
4 TraesCS1B01G057700 chr1B 23775691 23777712 2021 False 495.500000 743 87.330000 1 2435 2 chr1B.!!$F8 2434
5 TraesCS1B01G057700 chr1D 10761347 10763582 2235 True 1029.000000 1897 91.470667 1 2435 3 chr1D.!!$R2 2434
6 TraesCS1B01G057700 chr1D 10772908 10774619 1711 True 897.500000 1242 91.715000 701 2432 2 chr1D.!!$R3 1731
7 TraesCS1B01G057700 chr1D 10844577 10846840 2263 False 752.750000 1881 90.173500 1 2435 4 chr1D.!!$F3 2434
8 TraesCS1B01G057700 chr1D 10836538 10837969 1431 False 630.033333 1203 89.372667 1 1687 3 chr1D.!!$F2 1686
9 TraesCS1B01G057700 chr1D 10932154 10932662 508 False 542.000000 542 86.602000 1944 2435 1 chr1D.!!$F1 491
10 TraesCS1B01G057700 chr1A 22789225 22790084 859 True 1404.000000 1404 96.163000 701 1559 1 chr1A.!!$R2 858
11 TraesCS1B01G057700 chr1A 13256341 13258123 1782 False 989.000000 1580 85.830500 701 2435 2 chr1A.!!$F4 1734
12 TraesCS1B01G057700 chr1A 13007190 13009164 1974 True 777.666667 1219 91.036667 1 2432 3 chr1A.!!$R4 2431
13 TraesCS1B01G057700 chr1A 13213132 13215260 2128 False 714.750000 1208 90.806750 1 2435 4 chr1A.!!$F2 2434
14 TraesCS1B01G057700 chr1A 13229743 13231685 1942 False 651.250000 1197 90.521250 1 2245 4 chr1A.!!$F3 2244
15 TraesCS1B01G057700 chr1A 13274287 13274794 507 False 481.000000 481 84.466000 1944 2435 1 chr1A.!!$F1 491
16 TraesCS1B01G057700 chr1A 22778018 22778886 868 True 286.000000 422 87.537500 1553 2435 2 chr1A.!!$R5 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 590 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.0 0.0 0.0 0.0 5.14 F
587 591 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1400 1435 0.898320 CATCAAGGACCAGACGACCT 59.102 55.0 0.00 0.00 35.36 3.85 R
1897 2032 2.087501 TGCAATGCAAAGCCATCTTG 57.912 45.0 5.01 0.06 34.76 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 159 7.923414 ATGCGATACACTGATAGTATCTACA 57.077 36.000 11.40 9.02 43.48 2.74
196 200 2.094286 AGACTCTGCAAACATCCTCTCG 60.094 50.000 0.00 0.00 0.00 4.04
197 201 1.895798 ACTCTGCAAACATCCTCTCGA 59.104 47.619 0.00 0.00 0.00 4.04
425 429 6.645790 AATTGGCATCTAAATGGAGTCATC 57.354 37.500 0.00 0.00 33.19 2.92
426 430 5.378230 TTGGCATCTAAATGGAGTCATCT 57.622 39.130 0.00 0.00 33.19 2.90
427 431 5.378230 TGGCATCTAAATGGAGTCATCTT 57.622 39.130 0.00 0.00 33.19 2.40
428 432 6.499106 TGGCATCTAAATGGAGTCATCTTA 57.501 37.500 0.00 0.00 33.19 2.10
429 433 6.528321 TGGCATCTAAATGGAGTCATCTTAG 58.472 40.000 0.00 0.00 33.19 2.18
430 434 5.936956 GGCATCTAAATGGAGTCATCTTAGG 59.063 44.000 0.00 0.00 33.19 2.69
431 435 5.411053 GCATCTAAATGGAGTCATCTTAGGC 59.589 44.000 0.00 0.00 33.19 3.93
432 436 6.743773 GCATCTAAATGGAGTCATCTTAGGCT 60.744 42.308 0.00 0.00 33.19 4.58
433 437 6.166984 TCTAAATGGAGTCATCTTAGGCTG 57.833 41.667 0.00 0.00 31.97 4.85
434 438 3.853355 AATGGAGTCATCTTAGGCTGG 57.147 47.619 0.00 0.00 32.24 4.85
435 439 2.254152 TGGAGTCATCTTAGGCTGGT 57.746 50.000 0.00 0.00 0.00 4.00
436 440 2.111384 TGGAGTCATCTTAGGCTGGTC 58.889 52.381 0.00 0.00 0.00 4.02
437 441 2.111384 GGAGTCATCTTAGGCTGGTCA 58.889 52.381 0.00 0.00 0.00 4.02
438 442 2.159028 GGAGTCATCTTAGGCTGGTCAC 60.159 54.545 0.00 0.00 0.00 3.67
439 443 2.497675 GAGTCATCTTAGGCTGGTCACA 59.502 50.000 0.00 0.00 0.00 3.58
440 444 2.906389 AGTCATCTTAGGCTGGTCACAA 59.094 45.455 0.00 0.00 0.00 3.33
441 445 3.521126 AGTCATCTTAGGCTGGTCACAAT 59.479 43.478 0.00 0.00 0.00 2.71
442 446 3.624861 GTCATCTTAGGCTGGTCACAATG 59.375 47.826 0.00 0.00 0.00 2.82
443 447 2.787473 TCTTAGGCTGGTCACAATGG 57.213 50.000 0.00 0.00 0.00 3.16
444 448 1.281867 TCTTAGGCTGGTCACAATGGG 59.718 52.381 0.00 0.00 0.00 4.00
445 449 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
446 450 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
447 451 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
448 452 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
449 453 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
450 454 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
451 455 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
452 456 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
453 457 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
454 458 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
455 459 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
456 460 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
457 461 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
458 462 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
459 463 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
460 464 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
461 465 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
462 466 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
463 467 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
464 468 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
465 469 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
466 470 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
467 471 6.037281 GGGCAAGAACATAAGCTAGTAACTTC 59.963 42.308 0.00 0.00 0.00 3.01
468 472 6.594159 GGCAAGAACATAAGCTAGTAACTTCA 59.406 38.462 0.00 0.00 0.00 3.02
469 473 7.413109 GGCAAGAACATAAGCTAGTAACTTCAC 60.413 40.741 0.00 0.00 0.00 3.18
470 474 7.117812 GCAAGAACATAAGCTAGTAACTTCACA 59.882 37.037 0.00 0.00 0.00 3.58
471 475 8.436200 CAAGAACATAAGCTAGTAACTTCACAC 58.564 37.037 0.00 0.00 0.00 3.82
472 476 7.897864 AGAACATAAGCTAGTAACTTCACACT 58.102 34.615 0.00 0.00 0.00 3.55
473 477 8.368668 AGAACATAAGCTAGTAACTTCACACTT 58.631 33.333 0.00 0.00 0.00 3.16
474 478 8.904099 AACATAAGCTAGTAACTTCACACTTT 57.096 30.769 0.00 0.00 0.00 2.66
475 479 8.535690 ACATAAGCTAGTAACTTCACACTTTC 57.464 34.615 0.00 0.00 0.00 2.62
476 480 7.603024 ACATAAGCTAGTAACTTCACACTTTCC 59.397 37.037 0.00 0.00 0.00 3.13
477 481 5.810080 AGCTAGTAACTTCACACTTTCCT 57.190 39.130 0.00 0.00 0.00 3.36
478 482 6.912951 AGCTAGTAACTTCACACTTTCCTA 57.087 37.500 0.00 0.00 0.00 2.94
479 483 6.926313 AGCTAGTAACTTCACACTTTCCTAG 58.074 40.000 0.00 0.00 0.00 3.02
480 484 6.720288 AGCTAGTAACTTCACACTTTCCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
481 485 6.807720 GCTAGTAACTTCACACTTTCCTAGAC 59.192 42.308 0.00 0.00 0.00 2.59
482 486 6.980416 AGTAACTTCACACTTTCCTAGACT 57.020 37.500 0.00 0.00 0.00 3.24
483 487 9.228949 CTAGTAACTTCACACTTTCCTAGACTA 57.771 37.037 0.00 0.00 0.00 2.59
484 488 8.653036 AGTAACTTCACACTTTCCTAGACTAT 57.347 34.615 0.00 0.00 0.00 2.12
485 489 8.524487 AGTAACTTCACACTTTCCTAGACTATG 58.476 37.037 0.00 0.00 0.00 2.23
486 490 6.919775 ACTTCACACTTTCCTAGACTATGT 57.080 37.500 0.00 0.00 0.00 2.29
487 491 7.304497 ACTTCACACTTTCCTAGACTATGTT 57.696 36.000 0.00 0.00 0.00 2.71
488 492 8.418597 ACTTCACACTTTCCTAGACTATGTTA 57.581 34.615 0.00 0.00 0.00 2.41
489 493 8.305317 ACTTCACACTTTCCTAGACTATGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
490 494 8.418597 TTCACACTTTCCTAGACTATGTTACT 57.581 34.615 0.00 0.00 0.00 2.24
491 495 9.524496 TTCACACTTTCCTAGACTATGTTACTA 57.476 33.333 0.00 0.00 0.00 1.82
492 496 8.954350 TCACACTTTCCTAGACTATGTTACTAC 58.046 37.037 0.00 0.00 0.00 2.73
493 497 8.189460 CACACTTTCCTAGACTATGTTACTACC 58.811 40.741 0.00 0.00 0.00 3.18
494 498 8.114743 ACACTTTCCTAGACTATGTTACTACCT 58.885 37.037 0.00 0.00 0.00 3.08
495 499 8.623030 CACTTTCCTAGACTATGTTACTACCTC 58.377 40.741 0.00 0.00 0.00 3.85
496 500 7.779326 ACTTTCCTAGACTATGTTACTACCTCC 59.221 40.741 0.00 0.00 0.00 4.30
497 501 6.836714 TCCTAGACTATGTTACTACCTCCA 57.163 41.667 0.00 0.00 0.00 3.86
498 502 7.403837 TCCTAGACTATGTTACTACCTCCAT 57.596 40.000 0.00 0.00 0.00 3.41
499 503 8.515927 TCCTAGACTATGTTACTACCTCCATA 57.484 38.462 0.00 0.00 0.00 2.74
500 504 8.604184 TCCTAGACTATGTTACTACCTCCATAG 58.396 40.741 0.00 0.00 41.50 2.23
502 506 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
503 507 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
504 508 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
505 509 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
506 510 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
509 513 3.897657 CTACCTCCATAGTGGGTAGGA 57.102 52.381 9.90 0.00 45.09 2.94
510 514 4.194678 CTACCTCCATAGTGGGTAGGAA 57.805 50.000 9.90 0.00 45.09 3.36
511 515 2.760581 ACCTCCATAGTGGGTAGGAAC 58.239 52.381 9.90 0.00 38.32 3.62
512 516 2.045326 ACCTCCATAGTGGGTAGGAACA 59.955 50.000 9.90 0.00 38.32 3.18
513 517 3.311402 ACCTCCATAGTGGGTAGGAACAT 60.311 47.826 9.90 0.00 38.32 2.71
514 518 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
515 519 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
516 520 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
517 521 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
518 522 5.780282 TCCATAGTGGGTAGGAACATCTATG 59.220 44.000 0.00 0.00 38.32 2.23
519 523 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
520 524 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
521 525 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
522 526 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
523 527 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
524 528 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
525 529 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
526 530 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
527 531 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
528 532 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
529 533 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
530 534 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
531 535 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
532 536 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
533 537 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
534 538 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
535 539 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
536 540 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
537 541 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
538 542 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
539 543 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
540 544 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
541 545 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
542 546 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
543 547 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
544 548 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
545 549 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
546 550 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
547 551 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
548 552 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
549 553 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
550 554 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
569 573 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
570 574 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
571 575 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
572 576 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
573 577 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
574 578 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
575 579 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
576 580 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
577 581 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
578 582 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
579 583 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
580 584 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
581 585 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
582 586 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
583 587 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
584 588 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
585 589 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
586 590 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
587 591 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
588 592 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
589 593 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
590 594 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
591 595 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
592 596 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
593 597 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
594 598 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
595 599 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
596 600 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
597 601 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
598 602 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
599 603 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
601 605 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
611 615 6.856135 AACTTAGCTAGTTACCACAAACAC 57.144 37.500 6.75 0.00 45.22 3.32
612 616 5.303165 ACTTAGCTAGTTACCACAAACACC 58.697 41.667 0.00 0.00 31.29 4.16
613 617 5.071384 ACTTAGCTAGTTACCACAAACACCT 59.929 40.000 0.00 0.00 31.29 4.00
614 618 4.004196 AGCTAGTTACCACAAACACCTC 57.996 45.455 0.00 0.00 0.00 3.85
615 619 2.735134 GCTAGTTACCACAAACACCTCG 59.265 50.000 0.00 0.00 0.00 4.63
616 620 1.589803 AGTTACCACAAACACCTCGC 58.410 50.000 0.00 0.00 0.00 5.03
617 621 1.140252 AGTTACCACAAACACCTCGCT 59.860 47.619 0.00 0.00 0.00 4.93
618 622 1.529865 GTTACCACAAACACCTCGCTC 59.470 52.381 0.00 0.00 0.00 5.03
619 623 1.045407 TACCACAAACACCTCGCTCT 58.955 50.000 0.00 0.00 0.00 4.09
620 624 0.180406 ACCACAAACACCTCGCTCTT 59.820 50.000 0.00 0.00 0.00 2.85
621 625 0.868406 CCACAAACACCTCGCTCTTC 59.132 55.000 0.00 0.00 0.00 2.87
622 626 1.581934 CACAAACACCTCGCTCTTCA 58.418 50.000 0.00 0.00 0.00 3.02
623 627 2.146342 CACAAACACCTCGCTCTTCAT 58.854 47.619 0.00 0.00 0.00 2.57
624 628 2.549754 CACAAACACCTCGCTCTTCATT 59.450 45.455 0.00 0.00 0.00 2.57
625 629 3.745975 CACAAACACCTCGCTCTTCATTA 59.254 43.478 0.00 0.00 0.00 1.90
626 630 4.213270 CACAAACACCTCGCTCTTCATTAA 59.787 41.667 0.00 0.00 0.00 1.40
627 631 4.819630 ACAAACACCTCGCTCTTCATTAAA 59.180 37.500 0.00 0.00 0.00 1.52
628 632 5.473504 ACAAACACCTCGCTCTTCATTAAAT 59.526 36.000 0.00 0.00 0.00 1.40
629 633 6.653320 ACAAACACCTCGCTCTTCATTAAATA 59.347 34.615 0.00 0.00 0.00 1.40
630 634 6.663944 AACACCTCGCTCTTCATTAAATAC 57.336 37.500 0.00 0.00 0.00 1.89
631 635 4.804139 ACACCTCGCTCTTCATTAAATACG 59.196 41.667 0.00 0.00 0.00 3.06
632 636 4.804139 CACCTCGCTCTTCATTAAATACGT 59.196 41.667 0.00 0.00 0.00 3.57
633 637 4.804139 ACCTCGCTCTTCATTAAATACGTG 59.196 41.667 0.00 0.00 0.00 4.49
634 638 4.318121 CCTCGCTCTTCATTAAATACGTGC 60.318 45.833 0.00 0.00 0.00 5.34
635 639 3.554324 TCGCTCTTCATTAAATACGTGCC 59.446 43.478 0.00 0.00 0.00 5.01
636 640 3.308595 CGCTCTTCATTAAATACGTGCCA 59.691 43.478 0.00 0.00 0.00 4.92
637 641 4.588278 GCTCTTCATTAAATACGTGCCAC 58.412 43.478 0.00 0.00 0.00 5.01
638 642 4.094294 GCTCTTCATTAAATACGTGCCACA 59.906 41.667 0.00 0.00 0.00 4.17
639 643 5.220854 GCTCTTCATTAAATACGTGCCACAT 60.221 40.000 0.00 0.00 0.00 3.21
640 644 6.018262 GCTCTTCATTAAATACGTGCCACATA 60.018 38.462 0.00 0.00 0.00 2.29
641 645 7.466725 GCTCTTCATTAAATACGTGCCACATAA 60.467 37.037 0.00 0.00 0.00 1.90
642 646 7.915508 TCTTCATTAAATACGTGCCACATAAG 58.084 34.615 0.00 0.00 0.00 1.73
643 647 6.055231 TCATTAAATACGTGCCACATAAGC 57.945 37.500 0.00 0.00 0.00 3.09
644 648 5.586643 TCATTAAATACGTGCCACATAAGCA 59.413 36.000 0.00 0.00 38.08 3.91
645 649 5.881777 TTAAATACGTGCCACATAAGCAA 57.118 34.783 0.00 0.00 43.02 3.91
646 650 4.775058 AAATACGTGCCACATAAGCAAA 57.225 36.364 0.00 0.00 43.02 3.68
647 651 4.355543 AATACGTGCCACATAAGCAAAG 57.644 40.909 0.00 0.00 43.02 2.77
648 652 1.604604 ACGTGCCACATAAGCAAAGT 58.395 45.000 0.00 0.00 43.02 2.66
649 653 1.953686 ACGTGCCACATAAGCAAAGTT 59.046 42.857 0.00 0.00 43.02 2.66
650 654 2.287547 ACGTGCCACATAAGCAAAGTTG 60.288 45.455 0.00 0.00 43.02 3.16
651 655 2.287547 CGTGCCACATAAGCAAAGTTGT 60.288 45.455 0.00 0.00 43.02 3.32
652 656 3.058570 CGTGCCACATAAGCAAAGTTGTA 60.059 43.478 0.00 0.00 43.02 2.41
653 657 4.379394 CGTGCCACATAAGCAAAGTTGTAT 60.379 41.667 0.00 0.00 43.02 2.29
654 658 5.469479 GTGCCACATAAGCAAAGTTGTATT 58.531 37.500 0.00 0.00 43.02 1.89
655 659 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
656 660 4.864247 GCCACATAAGCAAAGTTGTATTGG 59.136 41.667 0.00 0.00 0.00 3.16
657 661 5.336372 GCCACATAAGCAAAGTTGTATTGGA 60.336 40.000 0.00 0.00 0.00 3.53
658 662 6.324819 CCACATAAGCAAAGTTGTATTGGAG 58.675 40.000 0.00 0.00 0.00 3.86
659 663 6.071952 CCACATAAGCAAAGTTGTATTGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
660 664 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
661 665 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
662 666 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
663 667 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
664 668 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
665 669 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
666 670 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
667 671 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
668 672 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
669 673 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
670 674 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
671 675 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
672 676 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
673 677 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
679 683 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
680 684 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
681 685 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
682 686 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
683 687 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
684 688 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
685 689 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
686 690 5.422650 GTGATGTTACTCCTAAGTTCCTCCT 59.577 44.000 0.00 0.00 36.92 3.69
687 691 5.657302 TGATGTTACTCCTAAGTTCCTCCTC 59.343 44.000 0.00 0.00 36.92 3.71
688 692 5.006896 TGTTACTCCTAAGTTCCTCCTCA 57.993 43.478 0.00 0.00 36.92 3.86
689 693 4.771054 TGTTACTCCTAAGTTCCTCCTCAC 59.229 45.833 0.00 0.00 36.92 3.51
690 694 3.837399 ACTCCTAAGTTCCTCCTCACT 57.163 47.619 0.00 0.00 28.74 3.41
691 695 3.436243 ACTCCTAAGTTCCTCCTCACTG 58.564 50.000 0.00 0.00 28.74 3.66
692 696 3.181416 ACTCCTAAGTTCCTCCTCACTGT 60.181 47.826 0.00 0.00 28.74 3.55
693 697 3.165875 TCCTAAGTTCCTCCTCACTGTG 58.834 50.000 0.17 0.17 0.00 3.66
694 698 3.165875 CCTAAGTTCCTCCTCACTGTGA 58.834 50.000 10.50 10.50 0.00 3.58
695 699 3.056465 CCTAAGTTCCTCCTCACTGTGAC 60.056 52.174 6.36 0.00 0.00 3.67
696 700 1.343069 AGTTCCTCCTCACTGTGACC 58.657 55.000 6.36 0.00 0.00 4.02
697 701 1.048601 GTTCCTCCTCACTGTGACCA 58.951 55.000 6.36 0.00 0.00 4.02
698 702 1.001406 GTTCCTCCTCACTGTGACCAG 59.999 57.143 6.36 5.42 44.68 4.00
699 703 1.188219 TCCTCCTCACTGTGACCAGC 61.188 60.000 6.36 0.00 42.81 4.85
895 906 8.144478 GTCTAGTGCTGGTTGATTTCATCTATA 58.856 37.037 0.00 0.00 0.00 1.31
1171 1188 2.397549 GCAAGCTGGACAATGAACAAC 58.602 47.619 0.00 0.00 0.00 3.32
1197 1214 3.208594 TGTGATTCATGATAGCACAGCC 58.791 45.455 18.56 1.80 34.85 4.85
1216 1233 1.404449 CCGATGGCGTGGTTACAAGTA 60.404 52.381 0.00 0.00 35.23 2.24
1400 1435 1.073125 TGCTGGGAAGTTCGGATTCAA 59.927 47.619 0.00 0.00 0.00 2.69
1578 1659 3.749226 TGGTGTAATGATGCAGTGAACA 58.251 40.909 0.00 0.00 0.00 3.18
1622 1738 7.424803 TGATGTGGTGCACTTTATATTATTGC 58.575 34.615 17.98 0.00 35.11 3.56
1791 1923 8.939929 CGACATGTATTAGGCAGAAATATGAAT 58.060 33.333 0.00 0.00 0.00 2.57
1920 2063 3.267483 AGATGGCTTTGCATTGCATTTC 58.733 40.909 12.95 4.25 38.76 2.17
1921 2064 2.843401 TGGCTTTGCATTGCATTTCT 57.157 40.000 12.95 0.00 38.76 2.52
1922 2065 2.418692 TGGCTTTGCATTGCATTTCTG 58.581 42.857 12.95 2.77 38.76 3.02
2031 2239 3.622163 TGTTGCTTGTTCAAGCCAATTTG 59.378 39.130 27.29 0.00 44.89 2.32
2111 2320 3.064134 GCCGCCAGAGATACTTTTTCTTC 59.936 47.826 0.00 0.00 0.00 2.87
2112 2321 4.508662 CCGCCAGAGATACTTTTTCTTCT 58.491 43.478 0.00 0.00 0.00 2.85
2178 2388 4.095483 GGCAATGCCTCTACATATGCATAC 59.905 45.833 18.47 0.00 46.69 2.39
2187 2397 7.255486 GCCTCTACATATGCATACGTGGATATA 60.255 40.741 17.59 0.00 44.52 0.86
2390 2723 7.553881 TTTCTTGTTCTAATATGCTAGTGCC 57.446 36.000 0.00 0.00 38.71 5.01
2397 2730 7.069455 TGTTCTAATATGCTAGTGCCTGAAGTA 59.931 37.037 0.00 0.00 38.71 2.24
2414 2747 4.098960 TGAAGTAGGTGTTGACGAGAAGTT 59.901 41.667 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 33 8.116669 TGTGTTTTTCCCATTTATATCCCACTA 58.883 33.333 0.00 0.00 0.00 2.74
155 159 6.488715 AGTCTTCTAGCCCAAATTCATCTTT 58.511 36.000 0.00 0.00 0.00 2.52
196 200 4.523943 ACATCTGAGGAGACTATGCTGATC 59.476 45.833 0.00 0.00 44.43 2.92
197 201 4.482030 ACATCTGAGGAGACTATGCTGAT 58.518 43.478 0.00 0.00 44.43 2.90
425 429 1.755179 CCCATTGTGACCAGCCTAAG 58.245 55.000 0.00 0.00 0.00 2.18
426 430 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
427 431 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
428 432 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
429 433 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
430 434 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
431 435 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
432 436 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
433 437 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
434 438 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
435 439 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
436 440 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
437 441 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
438 442 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
439 443 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
440 444 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
441 445 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
442 446 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
443 447 6.594159 TGAAGTTACTAGCTTATGTTCTTGCC 59.406 38.462 0.00 0.00 0.00 4.52
444 448 7.117812 TGTGAAGTTACTAGCTTATGTTCTTGC 59.882 37.037 0.00 0.00 0.00 4.01
445 449 8.436200 GTGTGAAGTTACTAGCTTATGTTCTTG 58.564 37.037 0.00 0.00 0.00 3.02
446 450 8.368668 AGTGTGAAGTTACTAGCTTATGTTCTT 58.631 33.333 0.00 0.00 0.00 2.52
447 451 7.897864 AGTGTGAAGTTACTAGCTTATGTTCT 58.102 34.615 0.00 0.00 0.00 3.01
448 452 8.535690 AAGTGTGAAGTTACTAGCTTATGTTC 57.464 34.615 0.00 0.00 0.00 3.18
449 453 8.904099 AAAGTGTGAAGTTACTAGCTTATGTT 57.096 30.769 0.00 0.00 0.00 2.71
450 454 7.603024 GGAAAGTGTGAAGTTACTAGCTTATGT 59.397 37.037 0.00 0.00 0.00 2.29
451 455 7.819900 AGGAAAGTGTGAAGTTACTAGCTTATG 59.180 37.037 0.00 0.00 0.00 1.90
452 456 7.908453 AGGAAAGTGTGAAGTTACTAGCTTAT 58.092 34.615 0.00 0.00 0.00 1.73
453 457 7.299246 AGGAAAGTGTGAAGTTACTAGCTTA 57.701 36.000 0.00 0.00 0.00 3.09
454 458 6.176014 AGGAAAGTGTGAAGTTACTAGCTT 57.824 37.500 0.00 0.00 0.00 3.74
455 459 5.810080 AGGAAAGTGTGAAGTTACTAGCT 57.190 39.130 0.00 0.00 0.00 3.32
456 460 6.807720 GTCTAGGAAAGTGTGAAGTTACTAGC 59.192 42.308 0.00 0.00 0.00 3.42
457 461 8.113173 AGTCTAGGAAAGTGTGAAGTTACTAG 57.887 38.462 0.00 0.00 0.00 2.57
458 462 9.750783 ATAGTCTAGGAAAGTGTGAAGTTACTA 57.249 33.333 0.00 0.00 0.00 1.82
459 463 6.980416 AGTCTAGGAAAGTGTGAAGTTACT 57.020 37.500 0.00 0.00 0.00 2.24
460 464 8.305317 ACATAGTCTAGGAAAGTGTGAAGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
461 465 8.418597 ACATAGTCTAGGAAAGTGTGAAGTTA 57.581 34.615 0.00 0.00 0.00 2.24
462 466 7.304497 ACATAGTCTAGGAAAGTGTGAAGTT 57.696 36.000 0.00 0.00 0.00 2.66
463 467 6.919775 ACATAGTCTAGGAAAGTGTGAAGT 57.080 37.500 0.00 0.00 0.00 3.01
464 468 8.524487 AGTAACATAGTCTAGGAAAGTGTGAAG 58.476 37.037 0.00 0.00 0.00 3.02
465 469 8.418597 AGTAACATAGTCTAGGAAAGTGTGAA 57.581 34.615 0.00 0.00 0.00 3.18
466 470 8.954350 GTAGTAACATAGTCTAGGAAAGTGTGA 58.046 37.037 0.00 0.00 0.00 3.58
467 471 8.189460 GGTAGTAACATAGTCTAGGAAAGTGTG 58.811 40.741 0.00 0.00 0.00 3.82
468 472 8.114743 AGGTAGTAACATAGTCTAGGAAAGTGT 58.885 37.037 0.00 0.00 0.00 3.55
469 473 8.522542 AGGTAGTAACATAGTCTAGGAAAGTG 57.477 38.462 0.00 0.00 0.00 3.16
470 474 7.779326 GGAGGTAGTAACATAGTCTAGGAAAGT 59.221 40.741 0.00 0.00 0.00 2.66
471 475 7.778853 TGGAGGTAGTAACATAGTCTAGGAAAG 59.221 40.741 0.00 0.00 0.00 2.62
472 476 7.645942 TGGAGGTAGTAACATAGTCTAGGAAA 58.354 38.462 0.00 0.00 0.00 3.13
473 477 7.217028 TGGAGGTAGTAACATAGTCTAGGAA 57.783 40.000 0.00 0.00 0.00 3.36
474 478 6.836714 TGGAGGTAGTAACATAGTCTAGGA 57.163 41.667 0.00 0.00 0.00 2.94
475 479 8.795842 CTATGGAGGTAGTAACATAGTCTAGG 57.204 42.308 0.00 0.00 38.48 3.02
481 485 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
482 486 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
483 487 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
484 488 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
490 494 3.272818 TGTTCCTACCCACTATGGAGGTA 59.727 47.826 0.00 3.53 40.96 3.08
491 495 2.045326 TGTTCCTACCCACTATGGAGGT 59.955 50.000 0.00 1.66 40.96 3.85
492 496 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
493 497 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
494 498 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
495 499 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
496 500 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
497 501 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
498 502 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
499 503 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
500 504 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
501 505 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
502 506 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
503 507 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
504 508 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
505 509 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
506 510 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
507 511 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
508 512 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
509 513 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
510 514 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
511 515 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
512 516 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
513 517 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
514 518 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
515 519 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
516 520 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
517 521 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
518 522 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
519 523 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
520 524 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
521 525 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
522 526 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
523 527 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
524 528 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
543 547 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
544 548 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
545 549 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
546 550 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
547 551 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
548 552 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
549 553 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
550 554 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
551 555 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
552 556 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
553 557 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
554 558 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
555 559 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
556 560 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
557 561 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
558 562 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
559 563 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
560 564 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
561 565 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
562 566 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
563 567 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
564 568 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
565 569 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
566 570 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
567 571 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
568 572 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
569 573 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
570 574 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
571 575 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
572 576 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
573 577 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
574 578 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
575 579 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
576 580 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
577 581 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
578 582 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
587 591 6.930722 GGTGTTTGTGGTAACTAGCTAAGTTA 59.069 38.462 10.09 10.09 46.85 2.24
589 593 5.071384 AGGTGTTTGTGGTAACTAGCTAAGT 59.929 40.000 0.00 0.00 41.49 2.24
590 594 5.548406 AGGTGTTTGTGGTAACTAGCTAAG 58.452 41.667 0.00 0.00 37.61 2.18
591 595 5.544650 GAGGTGTTTGTGGTAACTAGCTAA 58.455 41.667 0.00 0.00 37.61 3.09
592 596 4.321452 CGAGGTGTTTGTGGTAACTAGCTA 60.321 45.833 0.00 0.00 37.61 3.32
593 597 3.554337 CGAGGTGTTTGTGGTAACTAGCT 60.554 47.826 0.00 0.00 37.61 3.32
594 598 2.735134 CGAGGTGTTTGTGGTAACTAGC 59.265 50.000 0.00 0.00 37.61 3.42
595 599 2.735134 GCGAGGTGTTTGTGGTAACTAG 59.265 50.000 0.00 0.00 37.61 2.57
596 600 2.366266 AGCGAGGTGTTTGTGGTAACTA 59.634 45.455 0.00 0.00 37.61 2.24
597 601 1.140252 AGCGAGGTGTTTGTGGTAACT 59.860 47.619 0.00 0.00 37.61 2.24
598 602 1.529865 GAGCGAGGTGTTTGTGGTAAC 59.470 52.381 0.00 0.00 0.00 2.50
599 603 1.414919 AGAGCGAGGTGTTTGTGGTAA 59.585 47.619 0.00 0.00 0.00 2.85
600 604 1.045407 AGAGCGAGGTGTTTGTGGTA 58.955 50.000 0.00 0.00 0.00 3.25
601 605 0.180406 AAGAGCGAGGTGTTTGTGGT 59.820 50.000 0.00 0.00 0.00 4.16
602 606 0.868406 GAAGAGCGAGGTGTTTGTGG 59.132 55.000 0.00 0.00 0.00 4.17
603 607 1.581934 TGAAGAGCGAGGTGTTTGTG 58.418 50.000 0.00 0.00 0.00 3.33
604 608 2.550830 ATGAAGAGCGAGGTGTTTGT 57.449 45.000 0.00 0.00 0.00 2.83
605 609 5.356882 TTTAATGAAGAGCGAGGTGTTTG 57.643 39.130 0.00 0.00 0.00 2.93
606 610 6.183360 CGTATTTAATGAAGAGCGAGGTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
607 611 5.291128 CGTATTTAATGAAGAGCGAGGTGTT 59.709 40.000 0.00 0.00 0.00 3.32
608 612 4.804139 CGTATTTAATGAAGAGCGAGGTGT 59.196 41.667 0.00 0.00 0.00 4.16
609 613 4.804139 ACGTATTTAATGAAGAGCGAGGTG 59.196 41.667 0.00 0.00 0.00 4.00
610 614 4.804139 CACGTATTTAATGAAGAGCGAGGT 59.196 41.667 0.00 0.00 0.00 3.85
611 615 4.318121 GCACGTATTTAATGAAGAGCGAGG 60.318 45.833 0.00 0.00 0.00 4.63
612 616 4.318121 GGCACGTATTTAATGAAGAGCGAG 60.318 45.833 0.00 0.00 0.00 5.03
613 617 3.554324 GGCACGTATTTAATGAAGAGCGA 59.446 43.478 0.00 0.00 0.00 4.93
614 618 3.308595 TGGCACGTATTTAATGAAGAGCG 59.691 43.478 0.00 0.00 0.00 5.03
615 619 4.094294 TGTGGCACGTATTTAATGAAGAGC 59.906 41.667 13.77 0.00 0.00 4.09
616 620 5.794687 TGTGGCACGTATTTAATGAAGAG 57.205 39.130 13.77 0.00 0.00 2.85
617 621 7.466725 GCTTATGTGGCACGTATTTAATGAAGA 60.467 37.037 19.55 0.94 0.00 2.87
618 622 6.632834 GCTTATGTGGCACGTATTTAATGAAG 59.367 38.462 19.55 13.80 0.00 3.02
619 623 6.094186 TGCTTATGTGGCACGTATTTAATGAA 59.906 34.615 19.55 4.06 34.56 2.57
620 624 5.586643 TGCTTATGTGGCACGTATTTAATGA 59.413 36.000 19.55 3.01 34.56 2.57
621 625 5.815850 TGCTTATGTGGCACGTATTTAATG 58.184 37.500 19.55 4.53 34.56 1.90
622 626 6.443934 TTGCTTATGTGGCACGTATTTAAT 57.556 33.333 19.55 5.08 39.55 1.40
623 627 5.881777 TTGCTTATGTGGCACGTATTTAA 57.118 34.783 19.55 11.84 39.55 1.52
624 628 5.413213 ACTTTGCTTATGTGGCACGTATTTA 59.587 36.000 19.55 5.10 39.55 1.40
625 629 4.217550 ACTTTGCTTATGTGGCACGTATTT 59.782 37.500 19.55 1.66 39.55 1.40
626 630 3.756434 ACTTTGCTTATGTGGCACGTATT 59.244 39.130 19.55 4.10 39.55 1.89
627 631 3.343617 ACTTTGCTTATGTGGCACGTAT 58.656 40.909 19.55 7.98 39.55 3.06
628 632 2.773487 ACTTTGCTTATGTGGCACGTA 58.227 42.857 15.38 15.38 39.55 3.57
629 633 1.604604 ACTTTGCTTATGTGGCACGT 58.395 45.000 17.65 17.65 39.55 4.49
630 634 2.287547 ACAACTTTGCTTATGTGGCACG 60.288 45.455 13.77 0.00 39.55 5.34
631 635 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
632 636 5.468592 CAATACAACTTTGCTTATGTGGCA 58.531 37.500 0.00 0.00 37.97 4.92
633 637 4.864247 CCAATACAACTTTGCTTATGTGGC 59.136 41.667 0.00 0.00 0.00 5.01
634 638 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
635 639 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
636 640 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
637 641 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
638 642 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
639 643 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
640 644 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
641 645 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
642 646 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
643 647 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
644 648 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
645 649 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
646 650 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
647 651 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
648 652 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
649 653 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
650 654 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
656 660 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
657 661 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
658 662 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
659 663 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
660 664 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
661 665 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
662 666 5.422650 AGGAGGAACTTAGGAGTAACATCAC 59.577 44.000 0.00 0.00 41.55 3.06
663 667 5.590818 AGGAGGAACTTAGGAGTAACATCA 58.409 41.667 0.00 0.00 41.55 3.07
664 668 5.657302 TGAGGAGGAACTTAGGAGTAACATC 59.343 44.000 0.00 0.00 41.55 3.06
665 669 5.422650 GTGAGGAGGAACTTAGGAGTAACAT 59.577 44.000 0.00 0.00 41.55 2.71
666 670 4.771054 GTGAGGAGGAACTTAGGAGTAACA 59.229 45.833 0.00 0.00 41.55 2.41
667 671 5.018149 AGTGAGGAGGAACTTAGGAGTAAC 58.982 45.833 0.00 0.00 41.55 2.50
668 672 5.017490 CAGTGAGGAGGAACTTAGGAGTAA 58.983 45.833 0.00 0.00 41.55 2.24
669 673 4.044317 ACAGTGAGGAGGAACTTAGGAGTA 59.956 45.833 0.00 0.00 41.55 2.59
670 674 3.181416 ACAGTGAGGAGGAACTTAGGAGT 60.181 47.826 0.00 0.00 41.55 3.85
671 675 3.194542 CACAGTGAGGAGGAACTTAGGAG 59.805 52.174 0.00 0.00 41.55 3.69
672 676 3.165875 CACAGTGAGGAGGAACTTAGGA 58.834 50.000 0.00 0.00 41.55 2.94
673 677 3.056465 GTCACAGTGAGGAGGAACTTAGG 60.056 52.174 2.53 0.00 41.55 2.69
674 678 3.056465 GGTCACAGTGAGGAGGAACTTAG 60.056 52.174 2.53 0.00 41.55 2.18
675 679 2.897969 GGTCACAGTGAGGAGGAACTTA 59.102 50.000 2.53 0.00 41.55 2.24
676 680 1.694696 GGTCACAGTGAGGAGGAACTT 59.305 52.381 2.53 0.00 41.55 2.66
677 681 3.346963 CTGGTCACAGTGAGGAGGAACT 61.347 54.545 2.53 0.00 40.34 3.01
678 682 1.001406 CTGGTCACAGTGAGGAGGAAC 59.999 57.143 2.53 0.00 39.92 3.62
679 683 1.342074 CTGGTCACAGTGAGGAGGAA 58.658 55.000 2.53 0.00 39.92 3.36
680 684 1.188219 GCTGGTCACAGTGAGGAGGA 61.188 60.000 2.53 0.00 46.62 3.71
681 685 1.294780 GCTGGTCACAGTGAGGAGG 59.705 63.158 2.53 0.00 46.62 4.30
682 686 1.190833 AGGCTGGTCACAGTGAGGAG 61.191 60.000 2.53 3.96 46.62 3.69
683 687 0.764369 AAGGCTGGTCACAGTGAGGA 60.764 55.000 2.53 0.00 46.62 3.71
684 688 0.976641 TAAGGCTGGTCACAGTGAGG 59.023 55.000 2.53 0.00 46.62 3.86
685 689 1.620819 ACTAAGGCTGGTCACAGTGAG 59.379 52.381 2.53 0.00 46.62 3.51
686 690 1.344438 CACTAAGGCTGGTCACAGTGA 59.656 52.381 0.00 0.00 46.62 3.41
687 691 1.800805 CACTAAGGCTGGTCACAGTG 58.199 55.000 0.00 0.00 46.62 3.66
688 692 0.035458 GCACTAAGGCTGGTCACAGT 59.965 55.000 0.00 0.00 46.62 3.55
689 693 0.322975 AGCACTAAGGCTGGTCACAG 59.677 55.000 0.00 0.00 43.89 3.66
690 694 2.452116 AGCACTAAGGCTGGTCACA 58.548 52.632 0.00 0.00 43.89 3.58
698 702 0.537371 ACAACCACCAGCACTAAGGC 60.537 55.000 0.00 0.00 0.00 4.35
699 703 1.523758 GACAACCACCAGCACTAAGG 58.476 55.000 0.00 0.00 0.00 2.69
917 928 2.903135 CTGTCTGGAACTCCTTCTTCCT 59.097 50.000 0.00 0.00 38.46 3.36
1171 1188 4.512571 TGTGCTATCATGAATCACAATCGG 59.487 41.667 19.22 0.00 35.08 4.18
1197 1214 1.999048 TACTTGTAACCACGCCATCG 58.001 50.000 0.00 0.00 42.43 3.84
1291 1311 2.338577 ACACCAGCAGCCTCATTATC 57.661 50.000 0.00 0.00 0.00 1.75
1400 1435 0.898320 CATCAAGGACCAGACGACCT 59.102 55.000 0.00 0.00 35.36 3.85
1556 1637 4.334552 TGTTCACTGCATCATTACACCAT 58.665 39.130 0.00 0.00 0.00 3.55
1578 1659 8.397906 CCACATCATTACATCACGATTAACTTT 58.602 33.333 0.00 0.00 0.00 2.66
1637 1753 9.836864 TGCATCATTACTTATAAGTCATCAAGT 57.163 29.630 21.25 0.00 40.37 3.16
1739 1869 3.328382 AACGCCAAGTGCACTAATCTA 57.672 42.857 22.01 0.00 41.33 1.98
1765 1895 7.889589 TCATATTTCTGCCTAATACATGTCG 57.110 36.000 0.00 0.00 0.00 4.35
1791 1923 8.840200 AGAGAATCCCTTAACAGTAACAGATA 57.160 34.615 0.00 0.00 33.66 1.98
1798 1930 9.670442 AATATGGTAGAGAATCCCTTAACAGTA 57.330 33.333 0.00 0.00 33.66 2.74
1830 1965 4.561938 CCATGAGCAATCAACACAAACCAT 60.562 41.667 0.00 0.00 0.00 3.55
1839 1974 3.755378 AGAAGTGACCATGAGCAATCAAC 59.245 43.478 0.00 0.00 0.00 3.18
1887 2022 5.706369 TGCAAAGCCATCTTGCAAATATTTT 59.294 32.000 7.72 0.00 35.22 1.82
1897 2032 2.087501 TGCAATGCAAAGCCATCTTG 57.912 45.000 5.01 0.06 34.76 3.02
1920 2063 7.386299 AGAAGTTAGTTCAGAATAACAGCACAG 59.614 37.037 2.45 0.00 37.67 3.66
1921 2064 7.171508 CAGAAGTTAGTTCAGAATAACAGCACA 59.828 37.037 2.45 0.00 37.67 4.57
1922 2065 7.385205 TCAGAAGTTAGTTCAGAATAACAGCAC 59.615 37.037 2.45 6.11 37.67 4.40
2046 2254 9.303537 CGTTTCCTTTGTAAACATCCTTAAAAA 57.696 29.630 0.00 0.00 36.78 1.94
2047 2255 8.684520 TCGTTTCCTTTGTAAACATCCTTAAAA 58.315 29.630 0.00 0.00 36.78 1.52
2111 2320 9.014297 ACAGTTTATAAAAGAGAACATGGGAAG 57.986 33.333 0.00 0.00 0.00 3.46
2112 2321 8.792633 CACAGTTTATAAAAGAGAACATGGGAA 58.207 33.333 0.00 0.00 0.00 3.97
2178 2388 9.574458 CAGATGTCCTAAATTAGTATATCCACG 57.426 37.037 0.00 0.00 0.00 4.94
2196 2406 7.093322 AGCAGAAAAATTATCACAGATGTCC 57.907 36.000 0.00 0.00 0.00 4.02
2341 2668 9.890629 AATTACACTCATGCATAACTTAAGAGA 57.109 29.630 10.09 0.00 0.00 3.10
2390 2723 3.917329 TCTCGTCAACACCTACTTCAG 57.083 47.619 0.00 0.00 0.00 3.02
2397 2730 2.431057 AGTGAACTTCTCGTCAACACCT 59.569 45.455 0.00 0.00 0.00 4.00
2402 2735 3.812156 TTCCAGTGAACTTCTCGTCAA 57.188 42.857 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.