Multiple sequence alignment - TraesCS1B01G057200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G057200 chr1B 100.000 2134 0 0 1 2134 39671225 39673358 0.000000e+00 3941
1 TraesCS1B01G057200 chr1B 100.000 359 0 0 2430 2788 39673654 39674012 0.000000e+00 664
2 TraesCS1B01G057200 chr1B 76.540 1185 235 35 866 2027 56140938 56139774 2.370000e-170 608
3 TraesCS1B01G057200 chr1D 92.674 1829 121 10 317 2134 24138974 24140800 0.000000e+00 2623
4 TraesCS1B01G057200 chr1D 91.910 581 41 4 14 593 24136316 24136891 0.000000e+00 808
5 TraesCS1B01G057200 chr1D 75.425 1176 253 30 877 2031 24144886 24146046 3.160000e-149 538
6 TraesCS1B01G057200 chr1D 87.709 358 34 6 2430 2787 24140869 24141216 2.580000e-110 409
7 TraesCS1B01G057200 chr1D 83.008 359 59 2 1670 2027 36362365 36362008 9.630000e-85 324
8 TraesCS1B01G057200 chr1A 82.500 2080 295 37 95 2134 31033211 31031161 0.000000e+00 1760
9 TraesCS1B01G057200 chr1A 90.571 753 61 8 10 759 25474327 25475072 0.000000e+00 989
10 TraesCS1B01G057200 chr1A 81.773 1015 171 7 808 1814 31129881 31128873 0.000000e+00 837
11 TraesCS1B01G057200 chr1A 83.150 819 130 7 1232 2044 25324485 25323669 0.000000e+00 741
12 TraesCS1B01G057200 chr1A 76.260 1171 242 30 866 2016 35536206 35537360 8.600000e-165 590
13 TraesCS1B01G057200 chr1A 80.000 425 41 20 94 491 25422408 25422001 9.840000e-70 274
14 TraesCS1B01G057200 chr1A 80.556 288 34 10 635 917 25392732 25392462 4.710000e-48 202
15 TraesCS1B01G057200 chrUn 75.346 795 179 12 1188 1977 334218 335000 1.580000e-97 366
16 TraesCS1B01G057200 chrUn 78.938 546 110 5 1434 1977 425185723 425185181 1.580000e-97 366


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G057200 chr1B 39671225 39674012 2787 False 2302.5 3941 100.0000 1 2788 2 chr1B.!!$F1 2787
1 TraesCS1B01G057200 chr1B 56139774 56140938 1164 True 608.0 608 76.5400 866 2027 1 chr1B.!!$R1 1161
2 TraesCS1B01G057200 chr1D 24136316 24146046 9730 False 1094.5 2623 86.9295 14 2787 4 chr1D.!!$F1 2773
3 TraesCS1B01G057200 chr1A 31031161 31033211 2050 True 1760.0 1760 82.5000 95 2134 1 chr1A.!!$R4 2039
4 TraesCS1B01G057200 chr1A 25474327 25475072 745 False 989.0 989 90.5710 10 759 1 chr1A.!!$F1 749
5 TraesCS1B01G057200 chr1A 31128873 31129881 1008 True 837.0 837 81.7730 808 1814 1 chr1A.!!$R5 1006
6 TraesCS1B01G057200 chr1A 25323669 25324485 816 True 741.0 741 83.1500 1232 2044 1 chr1A.!!$R1 812
7 TraesCS1B01G057200 chr1A 35536206 35537360 1154 False 590.0 590 76.2600 866 2016 1 chr1A.!!$F2 1150
8 TraesCS1B01G057200 chrUn 334218 335000 782 False 366.0 366 75.3460 1188 1977 1 chrUn.!!$F1 789
9 TraesCS1B01G057200 chrUn 425185181 425185723 542 True 366.0 366 78.9380 1434 1977 1 chrUn.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 3377 0.526524 CCACAAAAGCGCCGTTTGAA 60.527 50.0 30.27 0.0 38.05 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2612 5025 0.039618 GCCCCACAAGGAATCAGGAA 59.96 55.0 0.0 0.0 38.24 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.142160 GGGGATTGTGCCACTAAAGAAATC 60.142 45.833 0.00 0.00 0.00 2.17
25 26 4.438744 GGATTGTGCCACTAAAGAAATCCG 60.439 45.833 6.61 0.00 34.16 4.18
29 31 1.014352 CCACTAAAGAAATCCGGCCG 58.986 55.000 21.04 21.04 0.00 6.13
61 63 3.460868 GCATTTTGGGGGCCCTCG 61.461 66.667 24.38 5.21 36.94 4.63
92 94 2.691732 CCTCAATGGGGGCCATGT 59.308 61.111 4.39 0.00 44.40 3.21
207 218 3.567478 AGTGATTCTTATGCACCCTCC 57.433 47.619 0.00 0.00 33.14 4.30
385 396 5.600908 TCGACACAAATTTTAGTGCCTAC 57.399 39.130 8.21 0.00 39.30 3.18
394 405 4.339872 TTTTAGTGCCTACGAACTTGGA 57.660 40.909 0.00 0.00 0.00 3.53
460 471 4.364860 TCGTCAATTCGACTCAAAACTCA 58.635 39.130 0.00 0.00 42.98 3.41
463 474 4.848299 GTCAATTCGACTCAAAACTCATGC 59.152 41.667 0.00 0.00 41.81 4.06
537 548 5.012328 AGCATTTTTGTGGGTTTTTACGA 57.988 34.783 0.00 0.00 0.00 3.43
545 556 4.208746 TGTGGGTTTTTACGAGACCATTT 58.791 39.130 0.00 0.00 35.11 2.32
585 596 9.705290 ATGTGTAGACGAACATTGCATTATATA 57.295 29.630 0.00 0.00 33.19 0.86
605 2975 7.852550 ATATACACTTTTCCCCTAGGTAGAC 57.147 40.000 8.29 0.00 0.00 2.59
607 2977 4.436079 ACACTTTTCCCCTAGGTAGACAT 58.564 43.478 8.29 0.00 0.00 3.06
672 3043 5.312895 TGGAATGAAAGGAGAAATTCGTGA 58.687 37.500 0.00 0.00 31.20 4.35
682 3053 5.412904 AGGAGAAATTCGTGAAGAAATGGAC 59.587 40.000 0.00 0.00 42.91 4.02
709 3080 3.202906 GCAGACAACAGTCCAAACACTA 58.797 45.455 0.00 0.00 32.62 2.74
717 3089 6.655003 ACAACAGTCCAAACACTATTCCATAG 59.345 38.462 0.00 0.00 38.81 2.23
745 3117 3.764218 TCCCCCAAAATACGTAAAGCAA 58.236 40.909 0.00 0.00 0.00 3.91
769 3141 3.117284 AGTGAAAACCCCATTGTACCACT 60.117 43.478 0.00 0.00 0.00 4.00
849 3243 0.898326 ATTTCCCCTTTCGCCCACAC 60.898 55.000 0.00 0.00 0.00 3.82
861 3255 1.003355 CCCACACTTCCATCGCTGT 60.003 57.895 0.00 0.00 0.00 4.40
978 3377 0.526524 CCACAAAAGCGCCGTTTGAA 60.527 50.000 30.27 0.00 38.05 2.69
1013 3413 0.810648 GCAGCCATGGTGAATTCGAA 59.189 50.000 14.67 0.00 32.22 3.71
1017 3417 2.091541 GCCATGGTGAATTCGAAGGAA 58.908 47.619 14.67 0.00 36.41 3.36
1023 3423 0.035598 TGAATTCGAAGGAACCGCCA 59.964 50.000 3.35 0.00 40.02 5.69
1134 3534 4.700365 CACCGCGAGACGCTGTCA 62.700 66.667 8.23 0.00 46.10 3.58
1182 3582 4.687215 AGCCATCGTGTGCTGCGT 62.687 61.111 0.00 0.00 36.23 5.24
1260 3660 3.668447 GCAAGATCTCAACAAGGTCAGA 58.332 45.455 0.00 0.00 37.61 3.27
1292 3692 2.154798 CTCGGCCTCGGTGAAGTGAA 62.155 60.000 0.00 0.00 36.95 3.18
1377 3777 0.387622 CACAACCATTGAAGGCGCAG 60.388 55.000 10.83 0.00 0.00 5.18
1511 3917 2.126424 GTTCTCCGCGACGCTCTT 60.126 61.111 19.02 0.00 0.00 2.85
1512 3918 1.733399 GTTCTCCGCGACGCTCTTT 60.733 57.895 19.02 0.00 0.00 2.52
1619 4025 2.242926 TCAGATCGATGTGAGATCCCC 58.757 52.381 20.37 0.00 44.02 4.81
1688 4094 1.538876 CTCCTCACCAGGGACCCAA 60.539 63.158 14.60 0.00 40.80 4.12
2027 4440 6.809689 TGTAGTAAGTGATATTGTGTTCCGTG 59.190 38.462 0.00 0.00 0.00 4.94
2088 4501 4.516321 GTGGTGGTTCGTAACTTTGGTATT 59.484 41.667 0.00 0.00 0.00 1.89
2110 4523 2.426522 TCAAAGATTGGAAGGACGCAG 58.573 47.619 0.00 0.00 0.00 5.18
2480 4893 6.430000 TGGAAGATGTTTTTGGTAGCTAACTC 59.570 38.462 10.78 0.00 0.00 3.01
2482 4895 7.148390 GGAAGATGTTTTTGGTAGCTAACTCTC 60.148 40.741 10.78 0.97 0.00 3.20
2486 4899 4.859304 TTTTGGTAGCTAACTCTCGTCA 57.141 40.909 10.78 0.00 0.00 4.35
2510 4923 3.933332 GAGTGACAATACTACTGGGTTGC 59.067 47.826 0.00 0.00 0.00 4.17
2511 4924 3.326588 AGTGACAATACTACTGGGTTGCA 59.673 43.478 0.00 0.00 0.00 4.08
2512 4925 3.435671 GTGACAATACTACTGGGTTGCAC 59.564 47.826 0.00 0.00 0.00 4.57
2528 4941 0.456221 GCACTCTAGCTAGCCGACAA 59.544 55.000 16.35 0.00 0.00 3.18
2567 4980 0.966179 GGTTTCGAAAACCCTGGCAT 59.034 50.000 15.21 0.00 34.26 4.40
2568 4981 1.067846 GGTTTCGAAAACCCTGGCATC 60.068 52.381 15.21 0.00 34.26 3.91
2598 5011 2.030412 CGGTGGGCGCTGCATATA 59.970 61.111 7.64 0.00 0.00 0.86
2599 5012 2.029288 CGGTGGGCGCTGCATATAG 61.029 63.158 7.64 0.00 0.00 1.31
2600 5013 1.071471 GGTGGGCGCTGCATATAGT 59.929 57.895 7.64 0.00 0.00 2.12
2601 5014 0.535102 GGTGGGCGCTGCATATAGTT 60.535 55.000 7.64 0.00 0.00 2.24
2602 5015 0.868406 GTGGGCGCTGCATATAGTTC 59.132 55.000 7.64 0.00 0.00 3.01
2603 5016 0.467804 TGGGCGCTGCATATAGTTCA 59.532 50.000 7.64 0.00 0.00 3.18
2604 5017 1.072173 TGGGCGCTGCATATAGTTCAT 59.928 47.619 7.64 0.00 0.00 2.57
2606 5019 2.095567 GGGCGCTGCATATAGTTCATTG 60.096 50.000 7.64 0.00 0.00 2.82
2608 5021 3.364366 GGCGCTGCATATAGTTCATTGTC 60.364 47.826 7.64 0.00 0.00 3.18
2609 5022 3.496130 GCGCTGCATATAGTTCATTGTCT 59.504 43.478 0.00 0.00 0.00 3.41
2610 5023 4.610007 GCGCTGCATATAGTTCATTGTCTG 60.610 45.833 0.00 0.00 0.00 3.51
2611 5024 4.509230 CGCTGCATATAGTTCATTGTCTGT 59.491 41.667 0.00 0.00 0.00 3.41
2612 5025 5.007039 CGCTGCATATAGTTCATTGTCTGTT 59.993 40.000 0.00 0.00 0.00 3.16
2613 5026 6.457392 CGCTGCATATAGTTCATTGTCTGTTT 60.457 38.462 0.00 0.00 0.00 2.83
2614 5027 6.909357 GCTGCATATAGTTCATTGTCTGTTTC 59.091 38.462 0.00 0.00 0.00 2.78
2615 5028 7.320443 TGCATATAGTTCATTGTCTGTTTCC 57.680 36.000 0.00 0.00 0.00 3.13
2616 5029 7.112122 TGCATATAGTTCATTGTCTGTTTCCT 58.888 34.615 0.00 0.00 0.00 3.36
2617 5030 7.066163 TGCATATAGTTCATTGTCTGTTTCCTG 59.934 37.037 0.00 0.00 0.00 3.86
2618 5031 7.280876 GCATATAGTTCATTGTCTGTTTCCTGA 59.719 37.037 0.00 0.00 0.00 3.86
2622 5035 5.474876 AGTTCATTGTCTGTTTCCTGATTCC 59.525 40.000 0.00 0.00 0.00 3.01
2634 5047 0.682209 CTGATTCCTTGTGGGGCTGG 60.682 60.000 0.00 0.00 35.33 4.85
2635 5048 1.384191 GATTCCTTGTGGGGCTGGT 59.616 57.895 0.00 0.00 35.33 4.00
2661 5074 6.371825 GTGTCAAGAAGGTCCAAATAAGGTAG 59.628 42.308 0.00 0.00 0.00 3.18
2672 5085 7.148239 GGTCCAAATAAGGTAGTTGAATGACAG 60.148 40.741 0.00 0.00 35.93 3.51
2676 5089 4.307032 AAGGTAGTTGAATGACAGGCAT 57.693 40.909 0.00 0.00 39.43 4.40
2677 5090 3.614092 AGGTAGTTGAATGACAGGCATG 58.386 45.455 0.00 0.00 37.28 4.06
2679 5092 4.225042 AGGTAGTTGAATGACAGGCATGTA 59.775 41.667 2.88 0.00 40.68 2.29
2683 5096 4.880120 AGTTGAATGACAGGCATGTATCTG 59.120 41.667 2.88 10.01 40.68 2.90
2686 5099 5.687780 TGAATGACAGGCATGTATCTGAAT 58.312 37.500 2.88 8.73 40.68 2.57
2687 5100 5.761726 TGAATGACAGGCATGTATCTGAATC 59.238 40.000 2.88 0.00 40.68 2.52
2712 5125 0.033796 TGGTCCCTATCGTCGTCCTT 60.034 55.000 0.00 0.00 0.00 3.36
2717 5130 0.102481 CCTATCGTCGTCCTTGTGGG 59.898 60.000 0.00 0.00 0.00 4.61
2753 5166 2.682856 GGTGATGCAACACGGTTCATAT 59.317 45.455 19.36 0.00 41.12 1.78
2761 5174 4.406069 CAACACGGTTCATATGCTTTCTG 58.594 43.478 0.00 0.00 0.00 3.02
2780 5193 3.055719 GTGTGTGGCCCGTGGATG 61.056 66.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.507407 TCTTTAGTGGCACAATCCCC 57.493 50.000 21.41 0.00 44.16 4.81
1 2 4.142160 GGATTTCTTTAGTGGCACAATCCC 60.142 45.833 24.17 12.80 44.16 3.85
2 3 4.438744 CGGATTTCTTTAGTGGCACAATCC 60.439 45.833 24.50 24.50 44.16 3.01
3 4 4.438744 CCGGATTTCTTTAGTGGCACAATC 60.439 45.833 21.41 17.18 44.16 2.67
4 5 3.443681 CCGGATTTCTTTAGTGGCACAAT 59.556 43.478 21.41 9.35 44.16 2.71
5 6 2.817258 CCGGATTTCTTTAGTGGCACAA 59.183 45.455 21.41 9.29 44.16 3.33
6 7 2.432444 CCGGATTTCTTTAGTGGCACA 58.568 47.619 21.41 2.83 0.00 4.57
7 8 1.132453 GCCGGATTTCTTTAGTGGCAC 59.868 52.381 10.29 10.29 40.66 5.01
8 9 1.459450 GCCGGATTTCTTTAGTGGCA 58.541 50.000 5.05 0.00 40.66 4.92
29 31 2.505364 AATGCAGAGGCCCCCAGTTC 62.505 60.000 0.00 0.00 40.13 3.01
41 43 2.284552 GGGCCCCCAAAATGCAGA 60.285 61.111 12.23 0.00 35.81 4.26
43 45 2.284552 GAGGGCCCCCAAAATGCA 60.285 61.111 21.43 0.00 38.92 3.96
84 86 0.839946 AGACCATCTACACATGGCCC 59.160 55.000 0.00 0.00 46.71 5.80
85 87 3.838244 TTAGACCATCTACACATGGCC 57.162 47.619 0.00 0.00 46.71 5.36
86 88 4.960938 TGATTAGACCATCTACACATGGC 58.039 43.478 0.00 0.00 46.71 4.40
89 91 4.262207 CCGCTGATTAGACCATCTACACAT 60.262 45.833 0.00 0.00 0.00 3.21
90 92 3.068165 CCGCTGATTAGACCATCTACACA 59.932 47.826 0.00 0.00 0.00 3.72
91 93 3.068307 ACCGCTGATTAGACCATCTACAC 59.932 47.826 0.00 0.00 0.00 2.90
92 94 3.296854 ACCGCTGATTAGACCATCTACA 58.703 45.455 0.00 0.00 0.00 2.74
176 187 8.462016 GTGCATAAGAATCACTAGTTTCCAATT 58.538 33.333 0.00 0.00 0.00 2.32
385 396 7.386299 CCTGGAAAGAGATATTATCCAAGTTCG 59.614 40.741 0.00 0.00 39.54 3.95
555 566 6.735678 TGCAATGTTCGTCTACACATTTAT 57.264 33.333 0.00 0.00 40.85 1.40
568 579 9.169468 GGAAAAGTGTATATAATGCAATGTTCG 57.831 33.333 0.00 0.00 37.83 3.95
569 580 9.463443 GGGAAAAGTGTATATAATGCAATGTTC 57.537 33.333 0.00 1.30 36.76 3.18
571 582 7.784550 AGGGGAAAAGTGTATATAATGCAATGT 59.215 33.333 0.00 0.00 0.00 2.71
585 596 3.865571 TGTCTACCTAGGGGAAAAGTGT 58.134 45.455 14.81 0.00 36.25 3.55
672 3043 0.877071 CTGCGCACAGTCCATTTCTT 59.123 50.000 5.66 0.00 39.22 2.52
682 3053 1.566563 GACTGTTGTCTGCGCACAG 59.433 57.895 19.84 19.84 45.95 3.66
729 3101 9.403869 GTTTTCACTTTTGCTTTACGTATTTTG 57.596 29.630 0.00 0.00 0.00 2.44
734 3106 5.450274 GGGGTTTTCACTTTTGCTTTACGTA 60.450 40.000 0.00 0.00 0.00 3.57
745 3117 4.100344 GTGGTACAATGGGGTTTTCACTTT 59.900 41.667 0.00 0.00 44.16 2.66
769 3141 0.035152 AGCATGCGTGAATTCAGGGA 60.035 50.000 25.08 23.60 36.57 4.20
799 3172 3.621268 GCATCGCTGGTGAATAAGTAACA 59.379 43.478 0.00 0.00 0.00 2.41
849 3243 2.673368 GGTTTGTCTACAGCGATGGAAG 59.327 50.000 5.32 1.86 0.00 3.46
861 3255 1.652947 GAGGAGGGTGGGTTTGTCTA 58.347 55.000 0.00 0.00 0.00 2.59
996 3396 1.281867 TCCTTCGAATTCACCATGGCT 59.718 47.619 13.04 0.00 0.00 4.75
1013 3413 4.699522 GCTCGGTTGGCGGTTCCT 62.700 66.667 0.00 0.00 35.26 3.36
1097 3497 0.792640 GGCACTCAGTGACATTGTCG 59.207 55.000 9.70 0.22 41.94 4.35
1103 3503 2.828868 GGTGGGCACTCAGTGACA 59.171 61.111 14.22 5.71 44.59 3.58
1134 3534 1.019805 TGAGTGTCGACGAGAGCGAT 61.020 55.000 11.62 0.00 40.50 4.58
1173 3573 1.745115 GGGAGCATAACGCAGCACA 60.745 57.895 0.00 0.00 46.13 4.57
1182 3582 4.924019 CGGTTGACGGGAGCATAA 57.076 55.556 0.00 0.00 39.42 1.90
1260 3660 1.592223 GCCGAGTTGTAGCCTCTGT 59.408 57.895 0.00 0.00 0.00 3.41
1311 3711 1.345415 GACTCGTTGTCCCTGGGTTTA 59.655 52.381 13.56 0.00 39.69 2.01
1314 3714 3.468063 GACTCGTTGTCCCTGGGT 58.532 61.111 13.56 0.00 39.69 4.51
1511 3917 2.567169 TCTTCCTCAATCTCTTCCGCAA 59.433 45.455 0.00 0.00 0.00 4.85
1512 3918 2.093973 GTCTTCCTCAATCTCTTCCGCA 60.094 50.000 0.00 0.00 0.00 5.69
1619 4025 1.048160 GGAGGGAGCAGAGGAGGAAG 61.048 65.000 0.00 0.00 0.00 3.46
1688 4094 8.739972 GGGTGAGAACATTTACAGAATTACAAT 58.260 33.333 0.00 0.00 0.00 2.71
2018 4431 5.713025 TCACTTACTATTACCACGGAACAC 58.287 41.667 0.00 0.00 0.00 3.32
2027 4440 8.074972 CGGAACAGAGTATCACTTACTATTACC 58.925 40.741 0.00 0.00 41.35 2.85
2088 4501 4.191544 CTGCGTCCTTCCAATCTTTGATA 58.808 43.478 0.00 0.00 0.00 2.15
2110 4523 6.737254 AATGCAATTACTAGTACACCACAC 57.263 37.500 0.91 0.00 32.46 3.82
2486 4899 3.428532 ACCCAGTAGTATTGTCACTCGT 58.571 45.455 0.00 0.00 0.00 4.18
2496 4909 3.385111 GCTAGAGTGCAACCCAGTAGTAT 59.615 47.826 0.00 0.00 37.80 2.12
2510 4923 2.941453 TTTGTCGGCTAGCTAGAGTG 57.059 50.000 25.15 12.35 0.00 3.51
2511 4924 2.101582 CCATTTGTCGGCTAGCTAGAGT 59.898 50.000 25.15 0.00 0.00 3.24
2512 4925 2.546795 CCCATTTGTCGGCTAGCTAGAG 60.547 54.545 25.15 16.43 0.00 2.43
2544 4957 2.609491 GCCAGGGTTTTCGAAACCATTC 60.609 50.000 22.50 11.61 42.03 2.67
2551 4964 1.582610 GCGATGCCAGGGTTTTCGAA 61.583 55.000 0.00 0.00 31.74 3.71
2582 4995 0.535102 AACTATATGCAGCGCCCACC 60.535 55.000 2.29 0.00 0.00 4.61
2595 5008 9.383519 GAATCAGGAAACAGACAATGAACTATA 57.616 33.333 0.00 0.00 0.00 1.31
2597 5010 6.655003 GGAATCAGGAAACAGACAATGAACTA 59.345 38.462 0.00 0.00 0.00 2.24
2598 5011 5.474876 GGAATCAGGAAACAGACAATGAACT 59.525 40.000 0.00 0.00 0.00 3.01
2599 5012 5.474876 AGGAATCAGGAAACAGACAATGAAC 59.525 40.000 0.00 0.00 0.00 3.18
2600 5013 5.634118 AGGAATCAGGAAACAGACAATGAA 58.366 37.500 0.00 0.00 0.00 2.57
2601 5014 5.246981 AGGAATCAGGAAACAGACAATGA 57.753 39.130 0.00 0.00 0.00 2.57
2602 5015 5.242393 ACAAGGAATCAGGAAACAGACAATG 59.758 40.000 0.00 0.00 0.00 2.82
2603 5016 5.242393 CACAAGGAATCAGGAAACAGACAAT 59.758 40.000 0.00 0.00 0.00 2.71
2604 5017 4.580167 CACAAGGAATCAGGAAACAGACAA 59.420 41.667 0.00 0.00 0.00 3.18
2606 5019 3.503748 CCACAAGGAATCAGGAAACAGAC 59.496 47.826 0.00 0.00 36.89 3.51
2608 5021 2.821969 CCCACAAGGAATCAGGAAACAG 59.178 50.000 0.00 0.00 38.24 3.16
2609 5022 2.490718 CCCCACAAGGAATCAGGAAACA 60.491 50.000 0.00 0.00 38.24 2.83
2610 5023 2.171003 CCCCACAAGGAATCAGGAAAC 58.829 52.381 0.00 0.00 38.24 2.78
2611 5024 1.549950 GCCCCACAAGGAATCAGGAAA 60.550 52.381 0.00 0.00 38.24 3.13
2612 5025 0.039618 GCCCCACAAGGAATCAGGAA 59.960 55.000 0.00 0.00 38.24 3.36
2613 5026 0.846427 AGCCCCACAAGGAATCAGGA 60.846 55.000 0.00 0.00 38.24 3.86
2614 5027 0.682209 CAGCCCCACAAGGAATCAGG 60.682 60.000 0.00 0.00 38.24 3.86
2615 5028 0.682209 CCAGCCCCACAAGGAATCAG 60.682 60.000 0.00 0.00 38.24 2.90
2616 5029 1.383799 CCAGCCCCACAAGGAATCA 59.616 57.895 0.00 0.00 38.24 2.57
2617 5030 0.967380 CACCAGCCCCACAAGGAATC 60.967 60.000 0.00 0.00 38.24 2.52
2618 5031 1.077265 CACCAGCCCCACAAGGAAT 59.923 57.895 0.00 0.00 38.24 3.01
2622 5035 1.898574 GACACACCAGCCCCACAAG 60.899 63.158 0.00 0.00 0.00 3.16
2634 5047 5.048713 CCTTATTTGGACCTTCTTGACACAC 60.049 44.000 0.00 0.00 0.00 3.82
2635 5048 5.070001 CCTTATTTGGACCTTCTTGACACA 58.930 41.667 0.00 0.00 0.00 3.72
2661 5074 4.877823 TCAGATACATGCCTGTCATTCAAC 59.122 41.667 0.00 0.00 36.79 3.18
2672 5085 2.107204 ACCCAGGATTCAGATACATGCC 59.893 50.000 0.00 0.00 0.00 4.40
2676 5089 2.771943 GACCACCCAGGATTCAGATACA 59.228 50.000 0.00 0.00 41.22 2.29
2677 5090 2.104963 GGACCACCCAGGATTCAGATAC 59.895 54.545 0.00 0.00 41.22 2.24
2679 5092 1.216990 GGACCACCCAGGATTCAGAT 58.783 55.000 0.00 0.00 41.22 2.90
2699 5112 0.102481 CCCCACAAGGACGACGATAG 59.898 60.000 0.00 0.00 38.24 2.08
2712 5125 0.327924 AAATCATGAGACGCCCCACA 59.672 50.000 0.09 0.00 0.00 4.17
2717 5130 1.737838 TCACCAAATCATGAGACGCC 58.262 50.000 0.09 0.00 0.00 5.68
2723 5136 3.366171 CGTGTTGCATCACCAAATCATGA 60.366 43.478 19.63 0.00 35.18 3.07
2753 5166 1.827789 GCCACACACCCAGAAAGCA 60.828 57.895 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.