Multiple sequence alignment - TraesCS1B01G056200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G056200 chr1B 100.000 3537 0 0 1 3537 39298409 39301945 0.000000e+00 6532.0
1 TraesCS1B01G056200 chr1B 80.479 1086 161 32 1122 2192 38637856 38638905 0.000000e+00 784.0
2 TraesCS1B01G056200 chr1B 77.094 1397 247 42 1117 2477 38612735 38614094 0.000000e+00 739.0
3 TraesCS1B01G056200 chr1B 74.470 1038 213 36 1178 2192 138730855 138731863 5.500000e-108 401.0
4 TraesCS1B01G056200 chr1B 90.556 180 13 3 443 619 204516981 204517159 5.900000e-58 235.0
5 TraesCS1B01G056200 chr1B 90.395 177 16 1 443 619 465917102 465917277 7.640000e-57 231.0
6 TraesCS1B01G056200 chr1A 88.590 2121 175 38 862 2944 23978420 23980511 0.000000e+00 2514.0
7 TraesCS1B01G056200 chr1A 88.943 615 40 10 2940 3537 24073832 24074435 0.000000e+00 734.0
8 TraesCS1B01G056200 chr1A 77.725 1046 150 48 1187 2192 23440197 23441199 6.630000e-157 564.0
9 TraesCS1B01G056200 chr1A 92.157 51 4 0 1044 1094 80562641 80562691 4.900000e-09 73.1
10 TraesCS1B01G056200 chr1D 87.344 2078 186 36 731 2806 22898058 22900060 0.000000e+00 2309.0
11 TraesCS1B01G056200 chr1D 79.722 1080 176 27 1133 2198 22585942 22586992 0.000000e+00 741.0
12 TraesCS1B01G056200 chr1D 77.646 1011 160 38 1133 2131 22540564 22541520 3.990000e-154 555.0
13 TraesCS1B01G056200 chr1D 78.985 847 139 30 1320 2151 22590359 22591181 3.110000e-150 542.0
14 TraesCS1B01G056200 chr1D 88.578 429 36 5 2 419 11761642 11762068 3.150000e-140 508.0
15 TraesCS1B01G056200 chr1D 88.372 430 37 6 2 420 353562072 353562499 4.070000e-139 505.0
16 TraesCS1B01G056200 chr1D 78.238 772 152 12 1644 2407 22519286 22520049 6.870000e-132 481.0
17 TraesCS1B01G056200 chr1D 75.823 972 174 43 1144 2088 86092600 86093537 1.510000e-118 436.0
18 TraesCS1B01G056200 chr1D 81.143 525 91 6 1672 2192 22594529 22595049 7.060000e-112 414.0
19 TraesCS1B01G056200 chr1D 82.719 434 46 13 1 422 90577012 90576596 3.360000e-95 359.0
20 TraesCS1B01G056200 chr1D 85.556 90 13 0 2808 2897 22900096 22900185 1.050000e-15 95.3
21 TraesCS1B01G056200 chr1D 84.375 96 9 4 1200 1289 22590269 22590364 4.860000e-14 89.8
22 TraesCS1B01G056200 chr7B 81.878 1225 183 22 1007 2213 651173962 651175165 0.000000e+00 996.0
23 TraesCS1B01G056200 chr7B 79.762 1260 193 35 1025 2239 651486696 651485454 0.000000e+00 857.0
24 TraesCS1B01G056200 chr7B 88.167 431 39 5 1 419 311479077 311479507 1.470000e-138 503.0
25 TraesCS1B01G056200 chr7B 91.525 177 12 2 445 619 1654766 1654591 1.270000e-59 241.0
26 TraesCS1B01G056200 chr6A 81.255 1227 190 27 1009 2213 146540712 146539504 0.000000e+00 955.0
27 TraesCS1B01G056200 chr7A 81.245 1173 186 22 1088 2239 675132221 675133380 0.000000e+00 917.0
28 TraesCS1B01G056200 chr7D 80.451 1197 186 26 1064 2239 583599335 583600504 0.000000e+00 870.0
29 TraesCS1B01G056200 chr7D 82.698 630 85 15 1599 2213 583442240 583442860 4.020000e-149 538.0
30 TraesCS1B01G056200 chr7D 87.760 433 40 7 1 420 32782822 32782390 8.820000e-136 494.0
31 TraesCS1B01G056200 chr7D 82.353 459 63 11 1008 1460 583440051 583440497 1.990000e-102 383.0
32 TraesCS1B01G056200 chr7D 92.000 175 10 4 445 615 452688017 452688191 3.530000e-60 243.0
33 TraesCS1B01G056200 chr7D 93.182 44 3 0 1022 1065 583599318 583599361 8.200000e-07 65.8
34 TraesCS1B01G056200 chr6D 89.510 429 34 4 1 418 336530564 336530992 1.870000e-147 532.0
35 TraesCS1B01G056200 chr3D 88.462 442 35 9 1 427 609019072 609018632 1.460000e-143 520.0
36 TraesCS1B01G056200 chr3D 88.167 431 38 5 1 419 141664507 141664936 5.270000e-138 501.0
37 TraesCS1B01G056200 chr3D 89.460 389 37 4 1 386 534157817 534157430 4.100000e-134 488.0
38 TraesCS1B01G056200 chr3D 91.351 185 10 3 445 624 506177138 506177321 7.580000e-62 248.0
39 TraesCS1B01G056200 chr3D 91.011 178 13 3 443 619 480220372 480220547 1.640000e-58 237.0
40 TraesCS1B01G056200 chr3B 87.529 433 40 7 1 421 445314646 445315076 4.100000e-134 488.0
41 TraesCS1B01G056200 chr2A 86.977 430 44 5 1 419 205486075 205486503 1.150000e-129 473.0
42 TraesCS1B01G056200 chr2A 90.395 177 15 2 443 618 615747417 615747592 7.640000e-57 231.0
43 TraesCS1B01G056200 chr2B 86.758 438 39 9 1 419 779265543 779265106 1.490000e-128 470.0
44 TraesCS1B01G056200 chr2B 92.655 177 9 2 445 617 771215310 771215134 5.860000e-63 252.0
45 TraesCS1B01G056200 chr2B 92.982 171 10 1 443 611 118465643 118465813 7.580000e-62 248.0
46 TraesCS1B01G056200 chr2B 90.608 181 12 3 443 619 400307319 400307140 5.900000e-58 235.0
47 TraesCS1B01G056200 chr2B 89.418 189 14 6 445 628 393083946 393084133 2.120000e-57 233.0
48 TraesCS1B01G056200 chr4D 86.036 444 40 12 1 423 46114254 46113812 1.160000e-124 457.0
49 TraesCS1B01G056200 chr4D 84.318 440 45 11 2 418 427612224 427611786 3.290000e-110 409.0
50 TraesCS1B01G056200 chr4D 90.000 180 13 4 443 619 63602830 63603007 9.880000e-56 228.0
51 TraesCS1B01G056200 chr4B 86.005 443 41 6 1 422 413504529 413504971 4.160000e-124 455.0
52 TraesCS1B01G056200 chr4B 90.556 180 13 3 443 619 99177453 99177275 5.900000e-58 235.0
53 TraesCS1B01G056200 chr3A 85.327 443 43 8 1 422 575482784 575483225 4.190000e-119 438.0
54 TraesCS1B01G056200 chr5D 85.337 416 41 6 32 427 435221017 435220602 2.540000e-111 412.0
55 TraesCS1B01G056200 chr5D 80.674 445 50 13 1 422 47042751 47042320 2.650000e-81 313.0
56 TraesCS1B01G056200 chr5A 92.571 175 10 2 445 616 101083446 101083272 7.580000e-62 248.0
57 TraesCS1B01G056200 chr6B 91.525 177 11 3 445 619 253436171 253436345 1.270000e-59 241.0
58 TraesCS1B01G056200 chr5B 91.111 180 12 3 443 619 99602939 99603117 1.270000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G056200 chr1B 39298409 39301945 3536 False 6532.00 6532 100.00000 1 3537 1 chr1B.!!$F3 3536
1 TraesCS1B01G056200 chr1B 38637856 38638905 1049 False 784.00 784 80.47900 1122 2192 1 chr1B.!!$F2 1070
2 TraesCS1B01G056200 chr1B 38612735 38614094 1359 False 739.00 739 77.09400 1117 2477 1 chr1B.!!$F1 1360
3 TraesCS1B01G056200 chr1B 138730855 138731863 1008 False 401.00 401 74.47000 1178 2192 1 chr1B.!!$F4 1014
4 TraesCS1B01G056200 chr1A 23978420 23980511 2091 False 2514.00 2514 88.59000 862 2944 1 chr1A.!!$F2 2082
5 TraesCS1B01G056200 chr1A 24073832 24074435 603 False 734.00 734 88.94300 2940 3537 1 chr1A.!!$F3 597
6 TraesCS1B01G056200 chr1A 23440197 23441199 1002 False 564.00 564 77.72500 1187 2192 1 chr1A.!!$F1 1005
7 TraesCS1B01G056200 chr1D 22898058 22900185 2127 False 1202.15 2309 86.45000 731 2897 2 chr1D.!!$F7 2166
8 TraesCS1B01G056200 chr1D 22540564 22541520 956 False 555.00 555 77.64600 1133 2131 1 chr1D.!!$F3 998
9 TraesCS1B01G056200 chr1D 22519286 22520049 763 False 481.00 481 78.23800 1644 2407 1 chr1D.!!$F2 763
10 TraesCS1B01G056200 chr1D 22585942 22595049 9107 False 446.70 741 81.05625 1133 2198 4 chr1D.!!$F6 1065
11 TraesCS1B01G056200 chr1D 86092600 86093537 937 False 436.00 436 75.82300 1144 2088 1 chr1D.!!$F4 944
12 TraesCS1B01G056200 chr7B 651173962 651175165 1203 False 996.00 996 81.87800 1007 2213 1 chr7B.!!$F2 1206
13 TraesCS1B01G056200 chr7B 651485454 651486696 1242 True 857.00 857 79.76200 1025 2239 1 chr7B.!!$R2 1214
14 TraesCS1B01G056200 chr6A 146539504 146540712 1208 True 955.00 955 81.25500 1009 2213 1 chr6A.!!$R1 1204
15 TraesCS1B01G056200 chr7A 675132221 675133380 1159 False 917.00 917 81.24500 1088 2239 1 chr7A.!!$F1 1151
16 TraesCS1B01G056200 chr7D 583599318 583600504 1186 False 467.90 870 86.81650 1022 2239 2 chr7D.!!$F3 1217
17 TraesCS1B01G056200 chr7D 583440051 583442860 2809 False 460.50 538 82.52550 1008 2213 2 chr7D.!!$F2 1205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 870 0.108756 GAACGGACGGGAAGAGAAGG 60.109 60.0 0.00 0.0 0.00 3.46 F
1719 11465 0.107268 CGCCATGATGATCCTGGACA 59.893 55.0 19.15 0.0 34.57 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 11675 1.168714 GTGAGCCGCCTTCTTCAATT 58.831 50.0 0.00 0.0 0.00 2.32 R
2931 12774 0.110464 GTTCGAGCACAAGCAGCTTC 60.110 55.0 4.07 0.0 43.58 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.646427 TGTAAATTTTAGTTTATGGTTCATGGC 57.354 29.630 0.00 0.00 0.00 4.40
54 55 9.646427 GTAAATTTTAGTTTATGGTTCATGGCA 57.354 29.630 0.00 0.00 0.00 4.92
56 57 8.776376 AATTTTAGTTTATGGTTCATGGCAAG 57.224 30.769 0.00 0.00 0.00 4.01
57 58 6.909550 TTTAGTTTATGGTTCATGGCAAGT 57.090 33.333 0.00 0.00 0.00 3.16
58 59 6.509418 TTAGTTTATGGTTCATGGCAAGTC 57.491 37.500 0.00 0.00 0.00 3.01
59 60 4.666512 AGTTTATGGTTCATGGCAAGTCT 58.333 39.130 0.00 0.00 0.00 3.24
60 61 5.815581 AGTTTATGGTTCATGGCAAGTCTA 58.184 37.500 0.00 0.00 0.00 2.59
61 62 5.882557 AGTTTATGGTTCATGGCAAGTCTAG 59.117 40.000 0.00 0.00 0.00 2.43
62 63 5.435686 TTATGGTTCATGGCAAGTCTAGT 57.564 39.130 0.00 0.00 0.00 2.57
63 64 3.788227 TGGTTCATGGCAAGTCTAGTT 57.212 42.857 0.00 0.00 0.00 2.24
64 65 4.098914 TGGTTCATGGCAAGTCTAGTTT 57.901 40.909 0.00 0.00 0.00 2.66
65 66 5.235850 TGGTTCATGGCAAGTCTAGTTTA 57.764 39.130 0.00 0.00 0.00 2.01
66 67 5.815581 TGGTTCATGGCAAGTCTAGTTTAT 58.184 37.500 0.00 0.00 0.00 1.40
67 68 6.245408 TGGTTCATGGCAAGTCTAGTTTATT 58.755 36.000 0.00 0.00 0.00 1.40
68 69 7.398829 TGGTTCATGGCAAGTCTAGTTTATTA 58.601 34.615 0.00 0.00 0.00 0.98
69 70 7.885922 TGGTTCATGGCAAGTCTAGTTTATTAA 59.114 33.333 0.00 0.00 0.00 1.40
70 71 8.903820 GGTTCATGGCAAGTCTAGTTTATTAAT 58.096 33.333 0.00 0.00 0.00 1.40
73 74 9.905713 TCATGGCAAGTCTAGTTTATTAATTCT 57.094 29.630 0.00 0.00 0.00 2.40
76 77 9.383519 TGGCAAGTCTAGTTTATTAATTCTCTG 57.616 33.333 0.00 0.00 0.00 3.35
77 78 8.338986 GGCAAGTCTAGTTTATTAATTCTCTGC 58.661 37.037 0.00 0.00 0.00 4.26
78 79 9.103861 GCAAGTCTAGTTTATTAATTCTCTGCT 57.896 33.333 0.00 0.00 0.00 4.24
137 138 9.674824 GAAGAAAATAGCTGAAACATATCATGG 57.325 33.333 0.00 0.00 33.60 3.66
138 139 7.655490 AGAAAATAGCTGAAACATATCATGGC 58.345 34.615 0.00 0.00 33.60 4.40
139 140 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
140 141 6.964807 AATAGCTGAAACATATCATGGCAA 57.035 33.333 0.00 0.00 33.60 4.52
141 142 4.644103 AGCTGAAACATATCATGGCAAC 57.356 40.909 0.00 0.00 33.60 4.17
142 143 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
143 144 4.708421 AGCTGAAACATATCATGGCAACTT 59.292 37.500 0.00 0.00 37.61 2.66
144 145 5.039333 GCTGAAACATATCATGGCAACTTC 58.961 41.667 0.00 0.00 37.61 3.01
145 146 5.393352 GCTGAAACATATCATGGCAACTTCA 60.393 40.000 0.00 0.00 37.61 3.02
146 147 6.198650 TGAAACATATCATGGCAACTTCAG 57.801 37.500 0.00 0.00 37.61 3.02
147 148 5.711506 TGAAACATATCATGGCAACTTCAGT 59.288 36.000 0.00 0.00 37.61 3.41
148 149 5.571784 AACATATCATGGCAACTTCAGTG 57.428 39.130 0.00 0.00 37.61 3.66
149 150 4.592942 ACATATCATGGCAACTTCAGTGT 58.407 39.130 0.00 0.00 37.61 3.55
150 151 5.744171 ACATATCATGGCAACTTCAGTGTA 58.256 37.500 0.00 0.00 37.61 2.90
151 152 6.179756 ACATATCATGGCAACTTCAGTGTAA 58.820 36.000 0.00 0.00 37.61 2.41
152 153 6.658816 ACATATCATGGCAACTTCAGTGTAAA 59.341 34.615 0.00 0.00 37.61 2.01
153 154 4.829064 TCATGGCAACTTCAGTGTAAAC 57.171 40.909 0.00 0.00 37.61 2.01
154 155 4.203226 TCATGGCAACTTCAGTGTAAACA 58.797 39.130 0.00 0.00 37.61 2.83
155 156 4.036262 TCATGGCAACTTCAGTGTAAACAC 59.964 41.667 5.07 5.07 42.11 3.32
170 171 6.620678 GTGTAAACACTATGGCAATTCATGT 58.379 36.000 5.99 0.00 43.25 3.21
171 172 6.527722 GTGTAAACACTATGGCAATTCATGTG 59.472 38.462 5.99 0.00 43.25 3.21
172 173 3.788333 ACACTATGGCAATTCATGTGC 57.212 42.857 0.00 0.00 41.45 4.57
173 174 3.090790 ACACTATGGCAATTCATGTGCA 58.909 40.909 8.81 0.00 44.07 4.57
174 175 3.510753 ACACTATGGCAATTCATGTGCAA 59.489 39.130 8.81 0.00 44.07 4.08
175 176 4.160814 ACACTATGGCAATTCATGTGCAAT 59.839 37.500 8.81 5.65 44.07 3.56
176 177 5.360429 ACACTATGGCAATTCATGTGCAATA 59.640 36.000 8.81 6.44 44.07 1.90
179 180 4.374843 TGGCAATTCATGTGCAATAGAC 57.625 40.909 8.81 0.00 44.07 2.59
180 181 3.762823 TGGCAATTCATGTGCAATAGACA 59.237 39.130 8.81 0.00 44.07 3.41
181 182 4.403113 TGGCAATTCATGTGCAATAGACAT 59.597 37.500 8.81 0.00 44.07 3.06
186 187 3.786516 CATGTGCAATAGACATGGCAA 57.213 42.857 0.00 0.00 42.87 4.52
187 188 4.316205 CATGTGCAATAGACATGGCAAT 57.684 40.909 0.00 0.00 42.87 3.56
188 189 5.441709 CATGTGCAATAGACATGGCAATA 57.558 39.130 0.00 0.00 42.87 1.90
189 190 6.020971 CATGTGCAATAGACATGGCAATAT 57.979 37.500 0.00 0.00 42.87 1.28
190 191 6.452242 CATGTGCAATAGACATGGCAATATT 58.548 36.000 0.00 0.00 42.87 1.28
191 192 6.468333 TGTGCAATAGACATGGCAATATTT 57.532 33.333 0.00 0.00 42.87 1.40
192 193 7.579761 TGTGCAATAGACATGGCAATATTTA 57.420 32.000 0.00 0.00 42.87 1.40
193 194 8.005192 TGTGCAATAGACATGGCAATATTTAA 57.995 30.769 0.00 0.00 42.87 1.52
194 195 8.473219 TGTGCAATAGACATGGCAATATTTAAA 58.527 29.630 0.00 0.00 42.87 1.52
195 196 9.311916 GTGCAATAGACATGGCAATATTTAAAA 57.688 29.630 0.00 0.00 42.87 1.52
196 197 9.531942 TGCAATAGACATGGCAATATTTAAAAG 57.468 29.630 0.00 0.00 38.19 2.27
197 198 9.533253 GCAATAGACATGGCAATATTTAAAAGT 57.467 29.630 0.00 0.00 30.66 2.66
199 200 9.950680 AATAGACATGGCAATATTTAAAAGTCG 57.049 29.630 0.00 0.00 0.00 4.18
200 201 7.391148 AGACATGGCAATATTTAAAAGTCGT 57.609 32.000 0.00 0.00 0.00 4.34
201 202 7.826690 AGACATGGCAATATTTAAAAGTCGTT 58.173 30.769 0.00 0.00 0.00 3.85
202 203 8.952278 AGACATGGCAATATTTAAAAGTCGTTA 58.048 29.630 0.00 0.00 0.00 3.18
203 204 9.562583 GACATGGCAATATTTAAAAGTCGTTAA 57.437 29.630 0.00 0.00 0.00 2.01
204 205 9.915629 ACATGGCAATATTTAAAAGTCGTTAAA 57.084 25.926 0.00 0.00 37.36 1.52
206 207 9.915629 ATGGCAATATTTAAAAGTCGTTAAACA 57.084 25.926 0.00 0.00 36.15 2.83
207 208 9.915629 TGGCAATATTTAAAAGTCGTTAAACAT 57.084 25.926 0.00 0.00 36.15 2.71
241 242 6.726035 GATCTAGTTTCAAAGATCTCGTCG 57.274 41.667 0.00 0.00 43.14 5.12
242 243 4.413087 TCTAGTTTCAAAGATCTCGTCGC 58.587 43.478 0.00 0.00 0.00 5.19
243 244 1.986378 AGTTTCAAAGATCTCGTCGCG 59.014 47.619 0.00 0.00 0.00 5.87
244 245 1.983605 GTTTCAAAGATCTCGTCGCGA 59.016 47.619 3.71 3.71 0.00 5.87
245 246 2.561733 TTCAAAGATCTCGTCGCGAT 57.438 45.000 14.06 0.00 34.61 4.58
246 247 1.827578 TCAAAGATCTCGTCGCGATG 58.172 50.000 22.29 22.29 34.61 3.84
247 248 0.848942 CAAAGATCTCGTCGCGATGG 59.151 55.000 26.94 17.61 34.61 3.51
248 249 0.738975 AAAGATCTCGTCGCGATGGA 59.261 50.000 26.94 21.82 34.61 3.41
249 250 0.955178 AAGATCTCGTCGCGATGGAT 59.045 50.000 26.94 24.97 34.61 3.41
250 251 0.955178 AGATCTCGTCGCGATGGATT 59.045 50.000 26.94 12.33 34.61 3.01
251 252 1.338337 AGATCTCGTCGCGATGGATTT 59.662 47.619 26.94 19.00 34.61 2.17
252 253 2.552743 AGATCTCGTCGCGATGGATTTA 59.447 45.455 26.94 7.46 34.61 1.40
253 254 2.855660 TCTCGTCGCGATGGATTTAA 57.144 45.000 26.94 6.72 34.61 1.52
254 255 3.364889 TCTCGTCGCGATGGATTTAAT 57.635 42.857 26.94 0.00 34.61 1.40
255 256 3.049912 TCTCGTCGCGATGGATTTAATG 58.950 45.455 26.94 8.18 34.61 1.90
256 257 3.049912 CTCGTCGCGATGGATTTAATGA 58.950 45.455 26.94 4.52 34.61 2.57
257 258 3.649073 TCGTCGCGATGGATTTAATGAT 58.351 40.909 26.94 0.00 0.00 2.45
258 259 3.428534 TCGTCGCGATGGATTTAATGATG 59.571 43.478 26.94 0.00 0.00 3.07
259 260 3.428534 CGTCGCGATGGATTTAATGATGA 59.571 43.478 20.66 0.00 0.00 2.92
260 261 4.084589 CGTCGCGATGGATTTAATGATGAA 60.085 41.667 20.66 0.00 0.00 2.57
261 262 5.558083 CGTCGCGATGGATTTAATGATGAAA 60.558 40.000 20.66 0.00 0.00 2.69
262 263 6.373779 GTCGCGATGGATTTAATGATGAAAT 58.626 36.000 14.06 0.00 0.00 2.17
263 264 6.303970 GTCGCGATGGATTTAATGATGAAATG 59.696 38.462 14.06 0.00 0.00 2.32
264 265 5.570206 CGCGATGGATTTAATGATGAAATGG 59.430 40.000 0.00 0.00 0.00 3.16
265 266 6.568271 CGCGATGGATTTAATGATGAAATGGA 60.568 38.462 0.00 0.00 0.00 3.41
266 267 7.318141 GCGATGGATTTAATGATGAAATGGAT 58.682 34.615 0.00 0.00 0.00 3.41
267 268 7.816031 GCGATGGATTTAATGATGAAATGGATT 59.184 33.333 0.00 0.00 0.00 3.01
268 269 9.701098 CGATGGATTTAATGATGAAATGGATTT 57.299 29.630 0.00 0.00 0.00 2.17
326 327 8.199176 GTTTAAAAACGGGAAATCCAAAAAGA 57.801 30.769 1.22 0.00 37.91 2.52
327 328 8.832521 GTTTAAAAACGGGAAATCCAAAAAGAT 58.167 29.630 1.22 0.00 37.91 2.40
328 329 8.596271 TTAAAAACGGGAAATCCAAAAAGATC 57.404 30.769 1.22 0.00 37.91 2.75
329 330 4.801330 AACGGGAAATCCAAAAAGATCC 57.199 40.909 1.22 0.00 37.91 3.36
330 331 3.096852 ACGGGAAATCCAAAAAGATCCC 58.903 45.455 1.22 0.00 37.91 3.85
331 332 3.245622 ACGGGAAATCCAAAAAGATCCCT 60.246 43.478 7.04 0.00 37.91 4.20
332 333 4.017867 ACGGGAAATCCAAAAAGATCCCTA 60.018 41.667 7.04 0.00 37.91 3.53
333 334 4.338400 CGGGAAATCCAAAAAGATCCCTAC 59.662 45.833 7.04 0.00 37.91 3.18
334 335 5.269189 GGGAAATCCAAAAAGATCCCTACA 58.731 41.667 1.22 0.00 37.91 2.74
335 336 5.899547 GGGAAATCCAAAAAGATCCCTACAT 59.100 40.000 1.22 0.00 37.91 2.29
336 337 6.183360 GGGAAATCCAAAAAGATCCCTACATG 60.183 42.308 1.22 0.00 37.91 3.21
337 338 5.859205 AATCCAAAAAGATCCCTACATGC 57.141 39.130 0.00 0.00 0.00 4.06
338 339 4.314522 TCCAAAAAGATCCCTACATGCA 57.685 40.909 0.00 0.00 0.00 3.96
339 340 4.870636 TCCAAAAAGATCCCTACATGCAT 58.129 39.130 0.00 0.00 0.00 3.96
340 341 4.646040 TCCAAAAAGATCCCTACATGCATG 59.354 41.667 25.09 25.09 0.00 4.06
341 342 4.365723 CAAAAAGATCCCTACATGCATGC 58.634 43.478 26.53 11.82 0.00 4.06
342 343 3.301794 AAAGATCCCTACATGCATGCA 57.698 42.857 26.53 25.04 0.00 3.96
343 344 3.520691 AAGATCCCTACATGCATGCAT 57.479 42.857 27.46 27.46 37.08 3.96
363 364 4.681978 GGGAACGTGGCGCAGTCT 62.682 66.667 10.83 0.00 0.00 3.24
364 365 2.260434 GGAACGTGGCGCAGTCTA 59.740 61.111 10.83 0.00 0.00 2.59
365 366 1.153628 GGAACGTGGCGCAGTCTAT 60.154 57.895 10.83 0.00 0.00 1.98
366 367 1.421410 GGAACGTGGCGCAGTCTATG 61.421 60.000 10.83 0.00 0.00 2.23
367 368 0.736325 GAACGTGGCGCAGTCTATGT 60.736 55.000 10.83 0.00 0.00 2.29
368 369 1.014044 AACGTGGCGCAGTCTATGTG 61.014 55.000 10.83 0.00 42.62 3.21
369 370 1.446099 CGTGGCGCAGTCTATGTGT 60.446 57.895 10.83 0.00 41.71 3.72
370 371 1.014044 CGTGGCGCAGTCTATGTGTT 61.014 55.000 10.83 0.00 41.71 3.32
371 372 1.734377 CGTGGCGCAGTCTATGTGTTA 60.734 52.381 10.83 0.00 41.71 2.41
372 373 2.550978 GTGGCGCAGTCTATGTGTTAT 58.449 47.619 10.83 0.00 41.71 1.89
373 374 3.713288 GTGGCGCAGTCTATGTGTTATA 58.287 45.455 10.83 0.00 41.71 0.98
374 375 3.736252 GTGGCGCAGTCTATGTGTTATAG 59.264 47.826 10.83 0.00 41.71 1.31
375 376 3.243737 TGGCGCAGTCTATGTGTTATAGG 60.244 47.826 10.83 0.00 41.71 2.57
376 377 3.005472 GGCGCAGTCTATGTGTTATAGGA 59.995 47.826 10.83 0.00 41.71 2.94
377 378 3.982058 GCGCAGTCTATGTGTTATAGGAC 59.018 47.826 0.30 0.00 41.71 3.85
378 379 4.219802 CGCAGTCTATGTGTTATAGGACG 58.780 47.826 0.00 0.00 34.56 4.79
379 380 4.261072 CGCAGTCTATGTGTTATAGGACGT 60.261 45.833 0.00 0.00 34.56 4.34
380 381 4.976731 GCAGTCTATGTGTTATAGGACGTG 59.023 45.833 0.00 0.00 0.00 4.49
381 382 5.450137 GCAGTCTATGTGTTATAGGACGTGT 60.450 44.000 0.00 0.00 0.00 4.49
382 383 5.971792 CAGTCTATGTGTTATAGGACGTGTG 59.028 44.000 0.00 0.00 0.00 3.82
383 384 5.651139 AGTCTATGTGTTATAGGACGTGTGT 59.349 40.000 0.00 0.00 0.00 3.72
384 385 5.742453 GTCTATGTGTTATAGGACGTGTGTG 59.258 44.000 0.00 0.00 0.00 3.82
385 386 2.679450 TGTGTTATAGGACGTGTGTGC 58.321 47.619 0.00 0.00 36.56 4.57
387 388 2.921754 GTGTTATAGGACGTGTGTGCTC 59.078 50.000 0.00 0.00 44.27 4.26
388 389 2.094390 TGTTATAGGACGTGTGTGCTCC 60.094 50.000 0.00 0.00 44.27 4.70
389 390 1.108776 TATAGGACGTGTGTGCTCCC 58.891 55.000 0.00 0.00 44.27 4.30
390 391 0.902984 ATAGGACGTGTGTGCTCCCA 60.903 55.000 0.00 0.00 44.27 4.37
391 392 1.812686 TAGGACGTGTGTGCTCCCAC 61.813 60.000 0.00 0.00 44.27 4.61
392 393 2.665185 GACGTGTGTGCTCCCACC 60.665 66.667 0.00 0.00 41.35 4.61
393 394 3.454587 GACGTGTGTGCTCCCACCA 62.455 63.158 0.00 0.00 41.35 4.17
394 395 2.972505 CGTGTGTGCTCCCACCAC 60.973 66.667 0.00 0.00 41.35 4.16
395 396 2.191908 GTGTGTGCTCCCACCACA 59.808 61.111 9.17 0.00 41.35 4.17
398 399 3.475494 TGTGCTCCCACCACACGT 61.475 61.111 0.00 0.00 41.35 4.49
399 400 2.972505 GTGCTCCCACCACACGTG 60.973 66.667 15.48 15.48 42.62 4.49
400 401 3.475494 TGCTCCCACCACACGTGT 61.475 61.111 17.22 17.22 41.26 4.49
401 402 2.972505 GCTCCCACCACACGTGTG 60.973 66.667 36.13 36.13 45.23 3.82
409 410 3.960237 CACACGTGTGGGCGTTAT 58.040 55.556 35.65 1.93 43.83 1.89
410 411 1.785321 CACACGTGTGGGCGTTATC 59.215 57.895 35.65 0.00 43.83 1.75
411 412 0.946700 CACACGTGTGGGCGTTATCA 60.947 55.000 35.65 0.00 43.83 2.15
412 413 0.669318 ACACGTGTGGGCGTTATCAG 60.669 55.000 22.71 0.00 43.83 2.90
413 414 1.740296 ACGTGTGGGCGTTATCAGC 60.740 57.895 0.00 0.00 43.04 4.26
414 415 2.798501 CGTGTGGGCGTTATCAGCG 61.799 63.158 0.00 0.00 35.00 5.18
415 416 1.740296 GTGTGGGCGTTATCAGCGT 60.740 57.895 0.00 0.00 35.00 5.07
416 417 1.447140 TGTGGGCGTTATCAGCGTC 60.447 57.895 0.00 0.00 35.00 5.19
419 420 4.515404 GGCGTTATCAGCGTCCTT 57.485 55.556 0.00 0.00 35.00 3.36
420 421 2.763651 GGCGTTATCAGCGTCCTTT 58.236 52.632 0.00 0.00 35.00 3.11
421 422 1.084289 GGCGTTATCAGCGTCCTTTT 58.916 50.000 0.00 0.00 35.00 2.27
422 423 1.062148 GGCGTTATCAGCGTCCTTTTC 59.938 52.381 0.00 0.00 35.00 2.29
423 424 1.730064 GCGTTATCAGCGTCCTTTTCA 59.270 47.619 0.00 0.00 0.00 2.69
424 425 2.158841 GCGTTATCAGCGTCCTTTTCAA 59.841 45.455 0.00 0.00 0.00 2.69
425 426 3.364565 GCGTTATCAGCGTCCTTTTCAAA 60.365 43.478 0.00 0.00 0.00 2.69
426 427 4.778904 CGTTATCAGCGTCCTTTTCAAAA 58.221 39.130 0.00 0.00 0.00 2.44
427 428 4.611366 CGTTATCAGCGTCCTTTTCAAAAC 59.389 41.667 0.00 0.00 0.00 2.43
428 429 5.560183 CGTTATCAGCGTCCTTTTCAAAACT 60.560 40.000 0.00 0.00 0.00 2.66
429 430 4.918810 ATCAGCGTCCTTTTCAAAACTT 57.081 36.364 0.00 0.00 0.00 2.66
430 431 4.287238 TCAGCGTCCTTTTCAAAACTTC 57.713 40.909 0.00 0.00 0.00 3.01
431 432 3.692101 TCAGCGTCCTTTTCAAAACTTCA 59.308 39.130 0.00 0.00 0.00 3.02
432 433 4.338118 TCAGCGTCCTTTTCAAAACTTCAT 59.662 37.500 0.00 0.00 0.00 2.57
433 434 5.529430 TCAGCGTCCTTTTCAAAACTTCATA 59.471 36.000 0.00 0.00 0.00 2.15
434 435 6.206634 TCAGCGTCCTTTTCAAAACTTCATAT 59.793 34.615 0.00 0.00 0.00 1.78
435 436 6.863126 CAGCGTCCTTTTCAAAACTTCATATT 59.137 34.615 0.00 0.00 0.00 1.28
436 437 7.382218 CAGCGTCCTTTTCAAAACTTCATATTT 59.618 33.333 0.00 0.00 0.00 1.40
437 438 7.382218 AGCGTCCTTTTCAAAACTTCATATTTG 59.618 33.333 0.00 0.00 37.77 2.32
438 439 7.381139 GCGTCCTTTTCAAAACTTCATATTTGA 59.619 33.333 0.00 0.00 42.17 2.69
439 440 9.410556 CGTCCTTTTCAAAACTTCATATTTGAT 57.589 29.630 2.20 0.00 43.04 2.57
487 488 9.914131 TGTGACATAGTTATATCACATCTAAGC 57.086 33.333 8.71 0.00 44.88 3.09
499 500 5.401033 CACATCTAAGCTAATGTGCACTC 57.599 43.478 19.41 2.18 44.32 3.51
500 501 5.114780 CACATCTAAGCTAATGTGCACTCT 58.885 41.667 19.41 7.45 44.32 3.24
501 502 5.006455 CACATCTAAGCTAATGTGCACTCTG 59.994 44.000 19.41 6.85 44.32 3.35
502 503 4.808414 TCTAAGCTAATGTGCACTCTGT 57.192 40.909 19.41 2.95 34.99 3.41
503 504 5.152623 TCTAAGCTAATGTGCACTCTGTT 57.847 39.130 19.41 10.04 34.99 3.16
504 505 5.551233 TCTAAGCTAATGTGCACTCTGTTT 58.449 37.500 19.41 11.63 34.99 2.83
505 506 4.494350 AAGCTAATGTGCACTCTGTTTG 57.506 40.909 19.41 9.54 34.99 2.93
506 507 2.227388 AGCTAATGTGCACTCTGTTTGC 59.773 45.455 19.41 17.50 40.63 3.68
507 508 2.843077 CTAATGTGCACTCTGTTTGCG 58.157 47.619 19.41 0.00 43.34 4.85
508 509 0.311790 AATGTGCACTCTGTTTGCGG 59.688 50.000 19.41 0.00 43.34 5.69
509 510 0.819259 ATGTGCACTCTGTTTGCGGT 60.819 50.000 19.41 0.00 43.34 5.68
510 511 1.279840 GTGCACTCTGTTTGCGGTC 59.720 57.895 10.32 0.00 43.34 4.79
511 512 1.146041 TGCACTCTGTTTGCGGTCT 59.854 52.632 0.00 0.00 43.34 3.85
512 513 0.463654 TGCACTCTGTTTGCGGTCTT 60.464 50.000 0.00 0.00 43.34 3.01
513 514 0.663153 GCACTCTGTTTGCGGTCTTT 59.337 50.000 0.00 0.00 0.00 2.52
514 515 1.065551 GCACTCTGTTTGCGGTCTTTT 59.934 47.619 0.00 0.00 0.00 2.27
515 516 2.479560 GCACTCTGTTTGCGGTCTTTTT 60.480 45.455 0.00 0.00 0.00 1.94
558 559 9.531942 TTTCTTGTTGCTGCATTATATATTTGG 57.468 29.630 1.84 0.00 0.00 3.28
559 560 7.660112 TCTTGTTGCTGCATTATATATTTGGG 58.340 34.615 1.84 0.00 0.00 4.12
560 561 6.343716 TGTTGCTGCATTATATATTTGGGG 57.656 37.500 1.84 0.00 0.00 4.96
561 562 5.245751 TGTTGCTGCATTATATATTTGGGGG 59.754 40.000 1.84 0.00 0.00 5.40
562 563 5.268131 TGCTGCATTATATATTTGGGGGA 57.732 39.130 0.00 0.00 0.00 4.81
563 564 5.263599 TGCTGCATTATATATTTGGGGGAG 58.736 41.667 0.00 0.00 0.00 4.30
564 565 4.098501 GCTGCATTATATATTTGGGGGAGC 59.901 45.833 0.00 0.00 0.00 4.70
565 566 5.513233 CTGCATTATATATTTGGGGGAGCT 58.487 41.667 0.00 0.00 0.00 4.09
566 567 5.902760 TGCATTATATATTTGGGGGAGCTT 58.097 37.500 0.00 0.00 0.00 3.74
567 568 7.038531 TGCATTATATATTTGGGGGAGCTTA 57.961 36.000 0.00 0.00 0.00 3.09
568 569 7.118723 TGCATTATATATTTGGGGGAGCTTAG 58.881 38.462 0.00 0.00 0.00 2.18
569 570 7.036935 TGCATTATATATTTGGGGGAGCTTAGA 60.037 37.037 0.00 0.00 0.00 2.10
570 571 8.001292 GCATTATATATTTGGGGGAGCTTAGAT 58.999 37.037 0.00 0.00 0.00 1.98
571 572 9.347240 CATTATATATTTGGGGGAGCTTAGATG 57.653 37.037 0.00 0.00 0.00 2.90
572 573 6.977244 ATATATTTGGGGGAGCTTAGATGT 57.023 37.500 0.00 0.00 0.00 3.06
573 574 9.569074 TTATATATTTGGGGGAGCTTAGATGTA 57.431 33.333 0.00 0.00 0.00 2.29
574 575 6.780198 ATATTTGGGGGAGCTTAGATGTAA 57.220 37.500 0.00 0.00 0.00 2.41
575 576 3.926058 TTGGGGGAGCTTAGATGTAAC 57.074 47.619 0.00 0.00 0.00 2.50
576 577 2.840511 TGGGGGAGCTTAGATGTAACA 58.159 47.619 0.00 0.00 0.00 2.41
577 578 3.393687 TGGGGGAGCTTAGATGTAACAT 58.606 45.455 0.00 0.00 0.00 2.71
578 579 3.391296 TGGGGGAGCTTAGATGTAACATC 59.609 47.826 0.00 0.00 0.00 3.06
579 580 3.244596 GGGGGAGCTTAGATGTAACATCC 60.245 52.174 0.00 1.46 0.00 3.51
580 581 3.648545 GGGGAGCTTAGATGTAACATCCT 59.351 47.826 0.00 0.00 0.00 3.24
581 582 4.103311 GGGGAGCTTAGATGTAACATCCTT 59.897 45.833 0.00 0.00 0.00 3.36
582 583 5.307196 GGGGAGCTTAGATGTAACATCCTTA 59.693 44.000 0.00 0.00 0.00 2.69
583 584 6.183361 GGGGAGCTTAGATGTAACATCCTTAA 60.183 42.308 0.00 0.00 0.00 1.85
584 585 7.280356 GGGAGCTTAGATGTAACATCCTTAAA 58.720 38.462 0.00 0.00 0.00 1.52
585 586 7.773690 GGGAGCTTAGATGTAACATCCTTAAAA 59.226 37.037 0.00 0.00 0.00 1.52
586 587 9.174166 GGAGCTTAGATGTAACATCCTTAAAAA 57.826 33.333 0.00 0.00 0.00 1.94
614 615 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
654 655 9.996554 TTACCTGTCCATATTATTGTGATAGTG 57.003 33.333 0.00 0.00 0.00 2.74
655 656 8.034313 ACCTGTCCATATTATTGTGATAGTGT 57.966 34.615 0.00 0.00 0.00 3.55
656 657 9.154632 ACCTGTCCATATTATTGTGATAGTGTA 57.845 33.333 0.00 0.00 0.00 2.90
657 658 9.996554 CCTGTCCATATTATTGTGATAGTGTAA 57.003 33.333 0.00 0.00 0.00 2.41
693 694 7.551035 TTTTTATAAGCCGCTTATTCCGTAA 57.449 32.000 26.59 14.09 37.72 3.18
694 695 6.774354 TTTATAAGCCGCTTATTCCGTAAG 57.226 37.500 26.59 0.00 42.26 2.34
695 696 2.685850 AAGCCGCTTATTCCGTAAGT 57.314 45.000 3.05 0.00 41.55 2.24
696 697 3.806625 AAGCCGCTTATTCCGTAAGTA 57.193 42.857 3.05 0.00 41.55 2.24
697 698 4.332428 AAGCCGCTTATTCCGTAAGTAT 57.668 40.909 3.05 0.00 41.55 2.12
698 699 4.332428 AGCCGCTTATTCCGTAAGTATT 57.668 40.909 0.00 0.00 41.55 1.89
699 700 4.700700 AGCCGCTTATTCCGTAAGTATTT 58.299 39.130 0.00 0.00 41.55 1.40
700 701 5.846203 AGCCGCTTATTCCGTAAGTATTTA 58.154 37.500 0.00 0.00 41.55 1.40
701 702 6.461640 AGCCGCTTATTCCGTAAGTATTTAT 58.538 36.000 0.00 0.00 41.55 1.40
702 703 6.932960 AGCCGCTTATTCCGTAAGTATTTATT 59.067 34.615 0.00 0.00 41.55 1.40
703 704 7.117379 AGCCGCTTATTCCGTAAGTATTTATTC 59.883 37.037 0.00 0.00 41.55 1.75
704 705 7.117379 GCCGCTTATTCCGTAAGTATTTATTCT 59.883 37.037 0.00 0.00 41.55 2.40
705 706 8.645487 CCGCTTATTCCGTAAGTATTTATTCTC 58.355 37.037 0.00 0.00 41.55 2.87
706 707 8.645487 CGCTTATTCCGTAAGTATTTATTCTCC 58.355 37.037 0.00 0.00 41.55 3.71
707 708 9.708092 GCTTATTCCGTAAGTATTTATTCTCCT 57.292 33.333 0.00 0.00 41.55 3.69
710 711 8.904099 ATTCCGTAAGTATTTATTCTCCTTGG 57.096 34.615 0.00 0.00 0.00 3.61
711 712 7.427989 TCCGTAAGTATTTATTCTCCTTGGT 57.572 36.000 0.00 0.00 0.00 3.67
712 713 8.537728 TCCGTAAGTATTTATTCTCCTTGGTA 57.462 34.615 0.00 0.00 0.00 3.25
713 714 8.980596 TCCGTAAGTATTTATTCTCCTTGGTAA 58.019 33.333 0.00 0.00 0.00 2.85
714 715 9.257651 CCGTAAGTATTTATTCTCCTTGGTAAG 57.742 37.037 0.00 0.00 0.00 2.34
715 716 8.762426 CGTAAGTATTTATTCTCCTTGGTAAGC 58.238 37.037 0.00 0.00 0.00 3.09
716 717 9.053840 GTAAGTATTTATTCTCCTTGGTAAGCC 57.946 37.037 0.00 0.00 0.00 4.35
717 718 7.208064 AGTATTTATTCTCCTTGGTAAGCCA 57.792 36.000 0.00 0.00 44.38 4.75
736 737 4.527816 AGCCAATAAAAATGGAGCAGTTGA 59.472 37.500 0.00 0.00 40.56 3.18
746 747 3.149196 TGGAGCAGTTGATGAGGTTTTC 58.851 45.455 0.00 0.00 0.00 2.29
757 758 1.133606 TGAGGTTTTCAGGGAACACCC 60.134 52.381 9.93 0.00 41.68 4.61
869 870 0.108756 GAACGGACGGGAAGAGAAGG 60.109 60.000 0.00 0.00 0.00 3.46
880 881 4.691216 CGGGAAGAGAAGGTAAGAGTTTTG 59.309 45.833 0.00 0.00 0.00 2.44
965 972 0.844503 GACGTGACAACTGACGACAC 59.155 55.000 0.00 0.00 38.94 3.67
985 992 3.490793 ATCGCGTCAGCCGATCAGG 62.491 63.158 5.77 0.00 44.97 3.86
1014 1021 3.951037 CCCTCTCCATAGATCGATCGATT 59.049 47.826 29.89 20.92 34.60 3.34
1228 1241 1.880340 CGGTCTTCGCAGCATCCTC 60.880 63.158 0.00 0.00 0.00 3.71
1229 1242 1.522580 GGTCTTCGCAGCATCCTCC 60.523 63.158 0.00 0.00 0.00 4.30
1230 1243 1.519719 GTCTTCGCAGCATCCTCCT 59.480 57.895 0.00 0.00 0.00 3.69
1231 1244 0.107945 GTCTTCGCAGCATCCTCCTT 60.108 55.000 0.00 0.00 0.00 3.36
1232 1245 0.176680 TCTTCGCAGCATCCTCCTTC 59.823 55.000 0.00 0.00 0.00 3.46
1233 1246 0.177604 CTTCGCAGCATCCTCCTTCT 59.822 55.000 0.00 0.00 0.00 2.85
1310 1348 3.726517 CCAAAGACCGCCACGCTG 61.727 66.667 0.00 0.00 0.00 5.18
1584 7484 1.982073 GCCGCCGTTCAAGGAGAATG 61.982 60.000 0.00 0.00 41.89 2.67
1647 7554 2.040544 CACATGGGCGTCTGGTTCC 61.041 63.158 0.00 0.00 0.00 3.62
1676 7594 1.208844 TCGTCCTCTCTGTCTCCCCT 61.209 60.000 0.00 0.00 0.00 4.79
1719 11465 0.107268 CGCCATGATGATCCTGGACA 59.893 55.000 19.15 0.00 34.57 4.02
1724 11470 3.118149 CCATGATGATCCTGGACAGTGAA 60.118 47.826 10.81 0.00 34.57 3.18
1736 11483 3.717294 AGTGAATTCGGCGCCCCT 61.717 61.111 23.46 1.79 0.00 4.79
1817 11564 0.173935 ACGCCATTTATCACGACGGA 59.826 50.000 0.00 0.00 0.00 4.69
1826 11573 5.571784 TTTATCACGACGGACAGTTCTAT 57.428 39.130 0.00 0.00 0.00 1.98
1916 11675 2.280797 GTCACGCCAAGGCTGACA 60.281 61.111 25.26 2.93 42.76 3.58
1934 11702 1.167851 CAATTGAAGAAGGCGGCTCA 58.832 50.000 13.70 2.63 0.00 4.26
2023 11797 3.928005 AGTGATCAAGGATCTGCACAT 57.072 42.857 0.00 0.00 39.56 3.21
2092 11866 1.671742 GGCAGTGGAAGGAGACGAA 59.328 57.895 0.00 0.00 0.00 3.85
2220 11994 0.324460 ACTAGGGGTCGCTAAGCTGT 60.324 55.000 0.00 0.00 0.00 4.40
2255 12029 2.259618 CTATCGTCGTGGTCCAACAAG 58.740 52.381 0.00 0.00 0.00 3.16
2274 12048 1.005097 AGAGTTGCAATGATGAGCCCA 59.995 47.619 0.59 0.00 0.00 5.36
2287 12061 1.078848 AGCCCATCAACTCTGACGC 60.079 57.895 0.00 0.00 33.30 5.19
2290 12064 0.247460 CCCATCAACTCTGACGCTCA 59.753 55.000 0.00 0.00 33.30 4.26
2480 12278 3.500680 CGCTAGCAGGTTTCAAGGTAAAA 59.499 43.478 16.45 0.00 0.00 1.52
2483 12286 6.456988 CGCTAGCAGGTTTCAAGGTAAAATAG 60.457 42.308 16.45 0.00 0.00 1.73
2514 12317 6.478344 TGCACTATTTGTTGAAACCATGAAAC 59.522 34.615 0.00 0.00 0.00 2.78
2589 12392 0.251742 CATTGGTTGGGCAAGGGAGA 60.252 55.000 0.00 0.00 0.00 3.71
2591 12394 0.263172 TTGGTTGGGCAAGGGAGAAA 59.737 50.000 0.00 0.00 0.00 2.52
2592 12395 0.178964 TGGTTGGGCAAGGGAGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
2593 12396 0.900182 GGTTGGGCAAGGGAGAAAGG 60.900 60.000 0.00 0.00 0.00 3.11
2599 12402 1.005924 GGCAAGGGAGAAAGGAATCCA 59.994 52.381 0.61 0.00 37.33 3.41
2648 12451 2.698855 ATCTTAGATGCTGGTGCGTT 57.301 45.000 0.00 0.00 43.34 4.84
2671 12474 6.507958 TCAATTGTCGCAATCTAAAATCCA 57.492 33.333 5.13 0.00 0.00 3.41
2816 12659 7.668525 TTTTATGCATGCAACAAATCATCAA 57.331 28.000 26.68 8.83 0.00 2.57
2825 12668 8.927721 CATGCAACAAATCATCAAAACTTATGA 58.072 29.630 0.00 0.00 36.60 2.15
2840 12683 9.191995 CAAAACTTATGAAACATAGGAACCAAC 57.808 33.333 7.64 0.00 0.00 3.77
2841 12684 8.472007 AAACTTATGAAACATAGGAACCAACA 57.528 30.769 7.64 0.00 0.00 3.33
2852 12695 2.627699 AGGAACCAACATTCGCAACAAT 59.372 40.909 0.00 0.00 0.00 2.71
2853 12696 3.823873 AGGAACCAACATTCGCAACAATA 59.176 39.130 0.00 0.00 0.00 1.90
2904 12747 6.579666 ACATTTGCATCATCACTACTGTTT 57.420 33.333 0.00 0.00 0.00 2.83
2954 12797 1.937108 GCTGCTTGTGCTCGAACTAGT 60.937 52.381 0.00 0.00 40.48 2.57
2955 12798 1.723542 CTGCTTGTGCTCGAACTAGTG 59.276 52.381 0.00 0.00 40.48 2.74
3007 12850 2.867109 TTTCTGAAAGCCTCTCCCTG 57.133 50.000 0.00 0.00 0.00 4.45
3021 12876 3.550437 CTCCCTGTGAGAATACTTGGG 57.450 52.381 0.00 0.00 44.42 4.12
3023 12878 4.030913 CTCCCTGTGAGAATACTTGGGTA 58.969 47.826 0.00 0.00 44.42 3.69
3026 12881 5.104527 TCCCTGTGAGAATACTTGGGTATTG 60.105 44.000 6.19 0.00 45.39 1.90
3111 12966 3.795101 GTGCAATAAGCTTCATGTCATGC 59.205 43.478 0.00 5.23 45.94 4.06
3128 12983 5.177326 GTCATGCCTAATTGCCAAAATTCA 58.823 37.500 0.00 0.00 0.00 2.57
3135 12990 9.240734 TGCCTAATTGCCAAAATTCATAAATTT 57.759 25.926 0.00 0.00 44.97 1.82
3173 13029 9.070149 GCTTCAGCAGATCTTTAAAATTTACTG 57.930 33.333 0.00 0.00 41.59 2.74
3205 13061 7.166167 TGATCTGCACTATGCTCAAATCATAT 58.834 34.615 2.02 0.00 45.31 1.78
3209 13065 5.704053 TGCACTATGCTCAAATCATATCCTG 59.296 40.000 2.02 0.00 45.31 3.86
3211 13067 6.429078 GCACTATGCTCAAATCATATCCTGAA 59.571 38.462 0.00 0.00 40.96 3.02
3212 13068 7.572724 GCACTATGCTCAAATCATATCCTGAAC 60.573 40.741 0.00 0.00 40.96 3.18
3214 13070 8.874156 ACTATGCTCAAATCATATCCTGAACTA 58.126 33.333 0.00 0.00 37.44 2.24
3215 13071 7.976135 ATGCTCAAATCATATCCTGAACTAC 57.024 36.000 0.00 0.00 37.44 2.73
3246 13102 2.162408 GCATAAGTCACAAGGCCTTGAC 59.838 50.000 44.50 34.19 42.93 3.18
3285 13141 7.043565 GGTGAATTATGGAGAAAATTGCATGT 58.956 34.615 0.00 0.00 31.24 3.21
3299 13156 6.689178 AATTGCATGTTGTAAATTGACGTC 57.311 33.333 9.11 9.11 0.00 4.34
3306 13163 4.513318 TGTTGTAAATTGACGTCTGCATCA 59.487 37.500 17.92 8.44 0.00 3.07
3317 13174 1.068748 GTCTGCATCAAAGCCAGTGTG 60.069 52.381 0.00 0.00 0.00 3.82
3328 13185 3.996150 AGCCAGTGTGAATTGAAACAG 57.004 42.857 0.00 0.00 0.00 3.16
3344 13201 3.652057 AACAGTGCTTGGCCTGTATAT 57.348 42.857 3.32 0.00 38.43 0.86
3375 13232 6.535150 TGAGTTATGAACCAAATAGCTTCTCG 59.465 38.462 0.00 0.00 0.00 4.04
3405 13262 9.177608 TGATATTGCCTTAGGATTTATATGTGC 57.822 33.333 0.69 0.00 0.00 4.57
3408 13265 4.761739 TGCCTTAGGATTTATATGTGCTGC 59.238 41.667 0.69 0.00 0.00 5.25
3411 13268 6.071728 GCCTTAGGATTTATATGTGCTGCATT 60.072 38.462 5.27 0.00 38.94 3.56
3414 13271 6.092955 AGGATTTATATGTGCTGCATTTGG 57.907 37.500 5.27 0.00 38.94 3.28
3415 13272 5.834742 AGGATTTATATGTGCTGCATTTGGA 59.165 36.000 5.27 0.00 38.94 3.53
3416 13273 6.015688 AGGATTTATATGTGCTGCATTTGGAG 60.016 38.462 5.27 0.00 38.94 3.86
3417 13274 6.239120 GGATTTATATGTGCTGCATTTGGAGT 60.239 38.462 5.27 0.00 38.94 3.85
3418 13275 6.528537 TTTATATGTGCTGCATTTGGAGTT 57.471 33.333 5.27 0.00 38.94 3.01
3419 13276 6.528537 TTATATGTGCTGCATTTGGAGTTT 57.471 33.333 5.27 0.00 38.94 2.66
3420 13277 3.756933 ATGTGCTGCATTTGGAGTTTT 57.243 38.095 5.27 0.00 35.78 2.43
3421 13278 2.823984 TGTGCTGCATTTGGAGTTTTG 58.176 42.857 5.27 0.00 35.78 2.44
3422 13279 2.137523 GTGCTGCATTTGGAGTTTTGG 58.862 47.619 5.27 0.00 35.78 3.28
3428 13285 3.181477 TGCATTTGGAGTTTTGGACACAG 60.181 43.478 0.00 0.00 0.00 3.66
3435 13292 4.338118 TGGAGTTTTGGACACAGCTTTTAG 59.662 41.667 0.00 0.00 0.00 1.85
3451 13308 9.358872 ACAGCTTTTAGTTTGAAAGAGAAAAAG 57.641 29.630 1.11 0.00 36.45 2.27
3458 13315 7.468141 AGTTTGAAAGAGAAAAAGTGAAGGT 57.532 32.000 0.00 0.00 0.00 3.50
3462 13319 5.590259 TGAAAGAGAAAAAGTGAAGGTCTGG 59.410 40.000 0.00 0.00 0.00 3.86
3472 13329 4.546674 AGTGAAGGTCTGGGATTTTTGTT 58.453 39.130 0.00 0.00 0.00 2.83
3513 13370 3.573569 CACACCGTGGAAACGTAGA 57.426 52.632 3.03 0.00 0.00 2.59
3528 13387 7.123098 TGGAAACGTAGATAGTTGGAATCTGTA 59.877 37.037 0.00 0.00 35.36 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.255301 ACATGCACTTAAAATTGCCATGG 58.745 39.130 7.63 7.63 38.00 3.66
1 2 8.645730 TTATACATGCACTTAAAATTGCCATG 57.354 30.769 0.00 8.43 38.00 3.66
2 3 9.263538 CATTATACATGCACTTAAAATTGCCAT 57.736 29.630 0.00 0.00 38.00 4.40
3 4 8.256605 ACATTATACATGCACTTAAAATTGCCA 58.743 29.630 0.00 0.00 38.00 4.92
4 5 8.647143 ACATTATACATGCACTTAAAATTGCC 57.353 30.769 0.00 0.00 38.00 4.52
27 28 9.646427 GCCATGAACCATAAACTAAAATTTACA 57.354 29.630 0.00 0.00 0.00 2.41
28 29 9.646427 TGCCATGAACCATAAACTAAAATTTAC 57.354 29.630 0.00 0.00 0.00 2.01
30 31 9.218440 CTTGCCATGAACCATAAACTAAAATTT 57.782 29.630 0.00 0.00 0.00 1.82
31 32 8.374743 ACTTGCCATGAACCATAAACTAAAATT 58.625 29.630 0.00 0.00 0.00 1.82
32 33 7.906327 ACTTGCCATGAACCATAAACTAAAAT 58.094 30.769 0.00 0.00 0.00 1.82
33 34 7.232534 AGACTTGCCATGAACCATAAACTAAAA 59.767 33.333 0.00 0.00 0.00 1.52
34 35 6.719370 AGACTTGCCATGAACCATAAACTAAA 59.281 34.615 0.00 0.00 0.00 1.85
35 36 6.245408 AGACTTGCCATGAACCATAAACTAA 58.755 36.000 0.00 0.00 0.00 2.24
36 37 5.815581 AGACTTGCCATGAACCATAAACTA 58.184 37.500 0.00 0.00 0.00 2.24
37 38 4.666512 AGACTTGCCATGAACCATAAACT 58.333 39.130 0.00 0.00 0.00 2.66
38 39 5.648092 ACTAGACTTGCCATGAACCATAAAC 59.352 40.000 0.00 0.00 0.00 2.01
39 40 5.815581 ACTAGACTTGCCATGAACCATAAA 58.184 37.500 0.00 0.00 0.00 1.40
40 41 5.435686 ACTAGACTTGCCATGAACCATAA 57.564 39.130 0.00 0.00 0.00 1.90
41 42 5.435686 AACTAGACTTGCCATGAACCATA 57.564 39.130 0.00 0.00 0.00 2.74
42 43 4.307032 AACTAGACTTGCCATGAACCAT 57.693 40.909 0.00 0.00 0.00 3.55
43 44 3.788227 AACTAGACTTGCCATGAACCA 57.212 42.857 0.00 0.00 0.00 3.67
44 45 6.759497 AATAAACTAGACTTGCCATGAACC 57.241 37.500 0.00 0.00 0.00 3.62
47 48 9.905713 AGAATTAATAAACTAGACTTGCCATGA 57.094 29.630 0.00 0.00 0.00 3.07
50 51 9.383519 CAGAGAATTAATAAACTAGACTTGCCA 57.616 33.333 0.00 0.00 0.00 4.92
51 52 8.338986 GCAGAGAATTAATAAACTAGACTTGCC 58.661 37.037 0.00 0.00 0.00 4.52
52 53 9.103861 AGCAGAGAATTAATAAACTAGACTTGC 57.896 33.333 0.00 0.00 0.00 4.01
111 112 9.674824 CCATGATATGTTTCAGCTATTTTCTTC 57.325 33.333 0.00 0.00 0.00 2.87
112 113 8.139989 GCCATGATATGTTTCAGCTATTTTCTT 58.860 33.333 0.00 0.00 0.00 2.52
113 114 7.286087 TGCCATGATATGTTTCAGCTATTTTCT 59.714 33.333 0.00 0.00 0.00 2.52
114 115 7.428020 TGCCATGATATGTTTCAGCTATTTTC 58.572 34.615 0.00 0.00 0.00 2.29
115 116 7.350744 TGCCATGATATGTTTCAGCTATTTT 57.649 32.000 0.00 0.00 0.00 1.82
116 117 6.964807 TGCCATGATATGTTTCAGCTATTT 57.035 33.333 0.00 0.00 0.00 1.40
117 118 6.548622 AGTTGCCATGATATGTTTCAGCTATT 59.451 34.615 0.00 0.00 0.00 1.73
118 119 6.066690 AGTTGCCATGATATGTTTCAGCTAT 58.933 36.000 0.00 0.00 0.00 2.97
119 120 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
120 121 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
121 122 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
122 123 6.127814 ACTGAAGTTGCCATGATATGTTTCAG 60.128 38.462 16.88 16.88 42.68 3.02
123 124 5.711506 ACTGAAGTTGCCATGATATGTTTCA 59.288 36.000 0.00 0.00 0.00 2.69
124 125 6.032094 CACTGAAGTTGCCATGATATGTTTC 58.968 40.000 0.00 0.00 0.00 2.78
125 126 5.477984 ACACTGAAGTTGCCATGATATGTTT 59.522 36.000 0.00 0.00 0.00 2.83
126 127 5.012239 ACACTGAAGTTGCCATGATATGTT 58.988 37.500 0.00 0.00 0.00 2.71
127 128 4.592942 ACACTGAAGTTGCCATGATATGT 58.407 39.130 0.00 0.00 0.00 2.29
128 129 6.682423 TTACACTGAAGTTGCCATGATATG 57.318 37.500 0.00 0.00 0.00 1.78
129 130 6.658816 TGTTTACACTGAAGTTGCCATGATAT 59.341 34.615 0.00 0.00 0.00 1.63
130 131 6.000840 TGTTTACACTGAAGTTGCCATGATA 58.999 36.000 0.00 0.00 0.00 2.15
131 132 4.826733 TGTTTACACTGAAGTTGCCATGAT 59.173 37.500 0.00 0.00 0.00 2.45
132 133 4.036262 GTGTTTACACTGAAGTTGCCATGA 59.964 41.667 5.78 0.00 43.25 3.07
133 134 4.290155 GTGTTTACACTGAAGTTGCCATG 58.710 43.478 5.78 0.00 43.25 3.66
134 135 4.568152 GTGTTTACACTGAAGTTGCCAT 57.432 40.909 5.78 0.00 43.25 4.40
146 147 6.527722 CACATGAATTGCCATAGTGTTTACAC 59.472 38.462 0.00 4.87 46.77 2.90
147 148 6.619744 CACATGAATTGCCATAGTGTTTACA 58.380 36.000 0.00 0.00 0.00 2.41
148 149 5.516339 GCACATGAATTGCCATAGTGTTTAC 59.484 40.000 0.00 0.00 33.58 2.01
149 150 5.184671 TGCACATGAATTGCCATAGTGTTTA 59.815 36.000 0.00 0.00 39.39 2.01
150 151 4.021280 TGCACATGAATTGCCATAGTGTTT 60.021 37.500 0.00 0.00 39.39 2.83
151 152 3.510753 TGCACATGAATTGCCATAGTGTT 59.489 39.130 0.00 0.00 39.39 3.32
152 153 3.090790 TGCACATGAATTGCCATAGTGT 58.909 40.909 0.00 0.00 39.39 3.55
153 154 3.786516 TGCACATGAATTGCCATAGTG 57.213 42.857 0.00 0.00 39.39 2.74
154 155 5.829391 TCTATTGCACATGAATTGCCATAGT 59.171 36.000 19.09 0.00 42.36 2.12
155 156 6.147581 GTCTATTGCACATGAATTGCCATAG 58.852 40.000 16.03 16.03 42.78 2.23
156 157 5.593502 TGTCTATTGCACATGAATTGCCATA 59.406 36.000 0.00 0.07 39.39 2.74
157 158 4.403113 TGTCTATTGCACATGAATTGCCAT 59.597 37.500 0.00 0.00 39.39 4.40
158 159 3.762823 TGTCTATTGCACATGAATTGCCA 59.237 39.130 0.00 0.00 39.39 4.92
159 160 4.374843 TGTCTATTGCACATGAATTGCC 57.625 40.909 0.00 0.00 39.39 4.52
167 168 6.659745 AATATTGCCATGTCTATTGCACAT 57.340 33.333 0.00 0.00 34.99 3.21
168 169 6.468333 AAATATTGCCATGTCTATTGCACA 57.532 33.333 0.00 0.00 34.99 4.57
169 170 8.870160 TTTAAATATTGCCATGTCTATTGCAC 57.130 30.769 0.00 0.00 34.99 4.57
170 171 9.531942 CTTTTAAATATTGCCATGTCTATTGCA 57.468 29.630 0.00 0.00 33.58 4.08
171 172 9.533253 ACTTTTAAATATTGCCATGTCTATTGC 57.467 29.630 0.00 0.00 0.00 3.56
173 174 9.950680 CGACTTTTAAATATTGCCATGTCTATT 57.049 29.630 0.00 0.00 0.00 1.73
174 175 9.120538 ACGACTTTTAAATATTGCCATGTCTAT 57.879 29.630 0.00 0.00 0.00 1.98
175 176 8.500753 ACGACTTTTAAATATTGCCATGTCTA 57.499 30.769 0.00 0.00 0.00 2.59
176 177 7.391148 ACGACTTTTAAATATTGCCATGTCT 57.609 32.000 0.00 0.00 0.00 3.41
177 178 9.562583 TTAACGACTTTTAAATATTGCCATGTC 57.437 29.630 0.00 0.00 0.00 3.06
178 179 9.915629 TTTAACGACTTTTAAATATTGCCATGT 57.084 25.926 0.00 0.00 0.00 3.21
180 181 9.915629 TGTTTAACGACTTTTAAATATTGCCAT 57.084 25.926 0.00 0.00 34.32 4.40
181 182 9.915629 ATGTTTAACGACTTTTAAATATTGCCA 57.084 25.926 0.00 0.00 32.07 4.92
218 219 5.172411 GCGACGAGATCTTTGAAACTAGATC 59.828 44.000 0.00 0.00 44.54 2.75
219 220 5.038033 GCGACGAGATCTTTGAAACTAGAT 58.962 41.667 0.00 0.00 33.92 1.98
220 221 4.413087 GCGACGAGATCTTTGAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
221 222 3.238570 CGCGACGAGATCTTTGAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
222 223 3.120095 TCGCGACGAGATCTTTGAAACTA 60.120 43.478 3.71 0.00 0.00 2.24
223 224 1.986378 CGCGACGAGATCTTTGAAACT 59.014 47.619 0.00 0.00 0.00 2.66
224 225 1.983605 TCGCGACGAGATCTTTGAAAC 59.016 47.619 3.71 0.00 0.00 2.78
225 226 2.341318 TCGCGACGAGATCTTTGAAA 57.659 45.000 3.71 0.00 0.00 2.69
226 227 2.185262 CATCGCGACGAGATCTTTGAA 58.815 47.619 12.93 0.00 39.91 2.69
227 228 1.533965 CCATCGCGACGAGATCTTTGA 60.534 52.381 12.93 0.00 39.91 2.69
228 229 0.848942 CCATCGCGACGAGATCTTTG 59.151 55.000 12.93 1.52 39.91 2.77
229 230 0.738975 TCCATCGCGACGAGATCTTT 59.261 50.000 12.93 0.00 39.91 2.52
230 231 0.955178 ATCCATCGCGACGAGATCTT 59.045 50.000 12.93 0.00 39.91 2.40
231 232 0.955178 AATCCATCGCGACGAGATCT 59.045 50.000 12.93 0.00 39.91 2.75
232 233 1.772182 AAATCCATCGCGACGAGATC 58.228 50.000 12.93 0.00 39.91 2.75
233 234 3.364889 TTAAATCCATCGCGACGAGAT 57.635 42.857 12.93 11.44 39.91 2.75
234 235 2.855660 TTAAATCCATCGCGACGAGA 57.144 45.000 12.93 9.24 39.91 4.04
235 236 3.049912 TCATTAAATCCATCGCGACGAG 58.950 45.455 12.93 4.21 39.91 4.18
236 237 3.086818 TCATTAAATCCATCGCGACGA 57.913 42.857 12.93 11.07 41.13 4.20
237 238 3.428534 TCATCATTAAATCCATCGCGACG 59.571 43.478 12.93 1.41 0.00 5.12
238 239 4.990543 TCATCATTAAATCCATCGCGAC 57.009 40.909 12.93 0.00 0.00 5.19
239 240 6.372981 CATTTCATCATTAAATCCATCGCGA 58.627 36.000 13.09 13.09 0.00 5.87
240 241 5.570206 CCATTTCATCATTAAATCCATCGCG 59.430 40.000 0.00 0.00 0.00 5.87
241 242 6.680810 TCCATTTCATCATTAAATCCATCGC 58.319 36.000 0.00 0.00 0.00 4.58
242 243 9.701098 AAATCCATTTCATCATTAAATCCATCG 57.299 29.630 0.00 0.00 0.00 3.84
301 302 8.199176 TCTTTTTGGATTTCCCGTTTTTAAAC 57.801 30.769 0.00 0.00 37.93 2.01
302 303 8.966069 ATCTTTTTGGATTTCCCGTTTTTAAA 57.034 26.923 0.00 0.00 37.93 1.52
303 304 7.658167 GGATCTTTTTGGATTTCCCGTTTTTAA 59.342 33.333 0.00 0.00 37.93 1.52
304 305 7.156000 GGATCTTTTTGGATTTCCCGTTTTTA 58.844 34.615 0.00 0.00 37.93 1.52
305 306 5.995282 GGATCTTTTTGGATTTCCCGTTTTT 59.005 36.000 0.00 0.00 37.93 1.94
306 307 5.512404 GGGATCTTTTTGGATTTCCCGTTTT 60.512 40.000 0.00 0.00 37.93 2.43
307 308 4.020573 GGGATCTTTTTGGATTTCCCGTTT 60.021 41.667 0.00 0.00 37.93 3.60
308 309 3.513912 GGGATCTTTTTGGATTTCCCGTT 59.486 43.478 0.00 0.00 37.93 4.44
309 310 3.096852 GGGATCTTTTTGGATTTCCCGT 58.903 45.455 0.00 0.00 37.93 5.28
310 311 3.365472 AGGGATCTTTTTGGATTTCCCG 58.635 45.455 0.00 0.00 35.87 5.14
311 312 5.269189 TGTAGGGATCTTTTTGGATTTCCC 58.731 41.667 0.00 0.00 32.81 3.97
312 313 6.683861 GCATGTAGGGATCTTTTTGGATTTCC 60.684 42.308 0.00 0.00 0.00 3.13
313 314 6.127366 TGCATGTAGGGATCTTTTTGGATTTC 60.127 38.462 0.00 0.00 0.00 2.17
314 315 5.721000 TGCATGTAGGGATCTTTTTGGATTT 59.279 36.000 0.00 0.00 0.00 2.17
315 316 5.271598 TGCATGTAGGGATCTTTTTGGATT 58.728 37.500 0.00 0.00 0.00 3.01
316 317 4.870636 TGCATGTAGGGATCTTTTTGGAT 58.129 39.130 0.00 0.00 0.00 3.41
317 318 4.314522 TGCATGTAGGGATCTTTTTGGA 57.685 40.909 0.00 0.00 0.00 3.53
318 319 4.738541 GCATGCATGTAGGGATCTTTTTGG 60.739 45.833 26.79 0.00 0.00 3.28
319 320 4.142116 TGCATGCATGTAGGGATCTTTTTG 60.142 41.667 26.79 0.00 0.00 2.44
320 321 4.025360 TGCATGCATGTAGGGATCTTTTT 58.975 39.130 26.79 0.00 0.00 1.94
321 322 3.634504 TGCATGCATGTAGGGATCTTTT 58.365 40.909 26.79 0.00 0.00 2.27
322 323 3.301794 TGCATGCATGTAGGGATCTTT 57.698 42.857 26.79 0.00 0.00 2.52
323 324 3.154710 CATGCATGCATGTAGGGATCTT 58.845 45.455 40.30 13.68 46.20 2.40
324 325 2.791655 CATGCATGCATGTAGGGATCT 58.208 47.619 40.30 14.19 46.20 2.75
337 338 2.100797 CACGTTCCCGCATGCATG 59.899 61.111 22.70 22.70 37.70 4.06
338 339 3.133464 CCACGTTCCCGCATGCAT 61.133 61.111 19.57 0.00 37.70 3.96
346 347 2.573609 ATAGACTGCGCCACGTTCCC 62.574 60.000 4.18 0.00 0.00 3.97
347 348 1.153628 ATAGACTGCGCCACGTTCC 60.154 57.895 4.18 0.00 0.00 3.62
348 349 0.736325 ACATAGACTGCGCCACGTTC 60.736 55.000 4.18 0.00 0.00 3.95
349 350 1.014044 CACATAGACTGCGCCACGTT 61.014 55.000 4.18 0.00 0.00 3.99
350 351 1.446099 CACATAGACTGCGCCACGT 60.446 57.895 4.18 0.00 0.00 4.49
351 352 1.014044 AACACATAGACTGCGCCACG 61.014 55.000 4.18 0.00 0.00 4.94
352 353 2.004583 TAACACATAGACTGCGCCAC 57.995 50.000 4.18 0.00 0.00 5.01
353 354 2.979814 ATAACACATAGACTGCGCCA 57.020 45.000 4.18 0.00 0.00 5.69
354 355 3.005472 TCCTATAACACATAGACTGCGCC 59.995 47.826 4.18 0.00 0.00 6.53
355 356 3.982058 GTCCTATAACACATAGACTGCGC 59.018 47.826 0.00 0.00 0.00 6.09
356 357 4.219802 CGTCCTATAACACATAGACTGCG 58.780 47.826 0.00 0.00 0.00 5.18
357 358 4.976731 CACGTCCTATAACACATAGACTGC 59.023 45.833 0.00 0.00 0.00 4.40
358 359 5.971792 CACACGTCCTATAACACATAGACTG 59.028 44.000 0.00 0.00 0.00 3.51
359 360 5.651139 ACACACGTCCTATAACACATAGACT 59.349 40.000 0.00 0.00 0.00 3.24
360 361 5.742453 CACACACGTCCTATAACACATAGAC 59.258 44.000 0.00 0.00 0.00 2.59
361 362 5.677852 GCACACACGTCCTATAACACATAGA 60.678 44.000 0.00 0.00 0.00 1.98
362 363 4.503007 GCACACACGTCCTATAACACATAG 59.497 45.833 0.00 0.00 0.00 2.23
363 364 4.158949 AGCACACACGTCCTATAACACATA 59.841 41.667 0.00 0.00 0.00 2.29
364 365 3.056107 AGCACACACGTCCTATAACACAT 60.056 43.478 0.00 0.00 0.00 3.21
365 366 2.297880 AGCACACACGTCCTATAACACA 59.702 45.455 0.00 0.00 0.00 3.72
366 367 2.921754 GAGCACACACGTCCTATAACAC 59.078 50.000 0.00 0.00 0.00 3.32
367 368 2.094390 GGAGCACACACGTCCTATAACA 60.094 50.000 0.00 0.00 0.00 2.41
368 369 2.537401 GGAGCACACACGTCCTATAAC 58.463 52.381 0.00 0.00 0.00 1.89
369 370 1.479323 GGGAGCACACACGTCCTATAA 59.521 52.381 0.00 0.00 0.00 0.98
370 371 1.108776 GGGAGCACACACGTCCTATA 58.891 55.000 0.00 0.00 0.00 1.31
371 372 0.902984 TGGGAGCACACACGTCCTAT 60.903 55.000 0.00 0.00 0.00 2.57
372 373 1.532078 TGGGAGCACACACGTCCTA 60.532 57.895 0.00 0.00 0.00 2.94
373 374 2.842462 TGGGAGCACACACGTCCT 60.842 61.111 0.00 0.00 0.00 3.85
374 375 2.665185 GTGGGAGCACACACGTCC 60.665 66.667 0.00 0.00 40.69 4.79
382 383 2.972505 CACGTGTGGTGGGAGCAC 60.973 66.667 7.58 0.00 46.05 4.40
396 397 2.798501 CGCTGATAACGCCCACACG 61.799 63.158 0.00 0.00 39.50 4.49
397 398 1.693083 GACGCTGATAACGCCCACAC 61.693 60.000 0.00 0.00 0.00 3.82
398 399 1.447140 GACGCTGATAACGCCCACA 60.447 57.895 0.00 0.00 0.00 4.17
399 400 2.171725 GGACGCTGATAACGCCCAC 61.172 63.158 0.00 0.00 32.77 4.61
400 401 1.895020 AAGGACGCTGATAACGCCCA 61.895 55.000 0.00 0.00 35.26 5.36
401 402 0.743345 AAAGGACGCTGATAACGCCC 60.743 55.000 0.00 0.00 32.65 6.13
402 403 1.062148 GAAAAGGACGCTGATAACGCC 59.938 52.381 0.00 0.00 0.00 5.68
403 404 1.730064 TGAAAAGGACGCTGATAACGC 59.270 47.619 0.00 0.00 0.00 4.84
404 405 4.398549 TTTGAAAAGGACGCTGATAACG 57.601 40.909 0.00 0.00 0.00 3.18
405 406 5.758924 AGTTTTGAAAAGGACGCTGATAAC 58.241 37.500 0.00 0.00 0.00 1.89
406 407 6.038825 TGAAGTTTTGAAAAGGACGCTGATAA 59.961 34.615 0.00 0.00 0.00 1.75
407 408 5.529430 TGAAGTTTTGAAAAGGACGCTGATA 59.471 36.000 0.00 0.00 0.00 2.15
408 409 4.338118 TGAAGTTTTGAAAAGGACGCTGAT 59.662 37.500 0.00 0.00 0.00 2.90
409 410 3.692101 TGAAGTTTTGAAAAGGACGCTGA 59.308 39.130 0.00 0.00 0.00 4.26
410 411 4.027572 TGAAGTTTTGAAAAGGACGCTG 57.972 40.909 0.00 0.00 0.00 5.18
411 412 4.918810 ATGAAGTTTTGAAAAGGACGCT 57.081 36.364 0.00 0.00 0.00 5.07
412 413 7.381139 TCAAATATGAAGTTTTGAAAAGGACGC 59.619 33.333 0.00 0.00 38.52 5.19
413 414 8.795786 TCAAATATGAAGTTTTGAAAAGGACG 57.204 30.769 0.00 0.00 38.52 4.79
478 479 5.114780 CAGAGTGCACATTAGCTTAGATGT 58.885 41.667 21.04 0.00 36.97 3.06
479 480 5.114780 ACAGAGTGCACATTAGCTTAGATG 58.885 41.667 21.04 0.00 34.99 2.90
480 481 5.350504 ACAGAGTGCACATTAGCTTAGAT 57.649 39.130 21.04 0.00 34.99 1.98
481 482 4.808414 ACAGAGTGCACATTAGCTTAGA 57.192 40.909 21.04 0.00 34.99 2.10
482 483 5.625251 CAAACAGAGTGCACATTAGCTTAG 58.375 41.667 21.04 0.62 34.99 2.18
483 484 4.083324 GCAAACAGAGTGCACATTAGCTTA 60.083 41.667 21.04 0.00 41.80 3.09
484 485 3.304928 GCAAACAGAGTGCACATTAGCTT 60.305 43.478 21.04 1.92 41.80 3.74
485 486 2.227388 GCAAACAGAGTGCACATTAGCT 59.773 45.455 21.04 5.03 41.80 3.32
486 487 2.589014 GCAAACAGAGTGCACATTAGC 58.411 47.619 21.04 9.53 41.80 3.09
487 488 2.413239 CCGCAAACAGAGTGCACATTAG 60.413 50.000 21.04 8.30 42.33 1.73
488 489 1.535028 CCGCAAACAGAGTGCACATTA 59.465 47.619 21.04 0.00 42.33 1.90
489 490 0.311790 CCGCAAACAGAGTGCACATT 59.688 50.000 21.04 3.08 42.33 2.71
490 491 0.819259 ACCGCAAACAGAGTGCACAT 60.819 50.000 21.04 3.86 42.33 3.21
491 492 1.436195 GACCGCAAACAGAGTGCACA 61.436 55.000 21.04 0.00 42.33 4.57
492 493 1.160329 AGACCGCAAACAGAGTGCAC 61.160 55.000 9.40 9.40 42.33 4.57
493 494 0.463654 AAGACCGCAAACAGAGTGCA 60.464 50.000 0.00 0.00 42.33 4.57
494 495 0.663153 AAAGACCGCAAACAGAGTGC 59.337 50.000 0.00 0.00 38.68 4.40
495 496 3.420839 AAAAAGACCGCAAACAGAGTG 57.579 42.857 0.00 0.00 0.00 3.51
532 533 9.531942 CCAAATATATAATGCAGCAACAAGAAA 57.468 29.630 0.00 0.00 0.00 2.52
533 534 8.143193 CCCAAATATATAATGCAGCAACAAGAA 58.857 33.333 0.00 0.00 0.00 2.52
534 535 7.255906 CCCCAAATATATAATGCAGCAACAAGA 60.256 37.037 0.00 0.00 0.00 3.02
535 536 6.869913 CCCCAAATATATAATGCAGCAACAAG 59.130 38.462 0.00 0.00 0.00 3.16
536 537 6.239543 CCCCCAAATATATAATGCAGCAACAA 60.240 38.462 0.00 0.00 0.00 2.83
537 538 5.245751 CCCCCAAATATATAATGCAGCAACA 59.754 40.000 0.00 0.00 0.00 3.33
538 539 5.480073 TCCCCCAAATATATAATGCAGCAAC 59.520 40.000 0.00 0.00 0.00 4.17
539 540 5.649265 TCCCCCAAATATATAATGCAGCAA 58.351 37.500 0.00 0.00 0.00 3.91
540 541 5.263599 CTCCCCCAAATATATAATGCAGCA 58.736 41.667 0.00 0.00 0.00 4.41
541 542 4.098501 GCTCCCCCAAATATATAATGCAGC 59.901 45.833 0.00 0.00 0.00 5.25
542 543 5.513233 AGCTCCCCCAAATATATAATGCAG 58.487 41.667 0.00 0.00 0.00 4.41
543 544 5.534914 AGCTCCCCCAAATATATAATGCA 57.465 39.130 0.00 0.00 0.00 3.96
544 545 7.346471 TCTAAGCTCCCCCAAATATATAATGC 58.654 38.462 0.00 0.00 0.00 3.56
545 546 9.347240 CATCTAAGCTCCCCCAAATATATAATG 57.653 37.037 0.00 0.00 0.00 1.90
546 547 9.073587 ACATCTAAGCTCCCCCAAATATATAAT 57.926 33.333 0.00 0.00 0.00 1.28
547 548 8.463055 ACATCTAAGCTCCCCCAAATATATAA 57.537 34.615 0.00 0.00 0.00 0.98
548 549 9.569074 TTACATCTAAGCTCCCCCAAATATATA 57.431 33.333 0.00 0.00 0.00 0.86
549 550 6.977244 ACATCTAAGCTCCCCCAAATATAT 57.023 37.500 0.00 0.00 0.00 0.86
550 551 7.293771 TGTTACATCTAAGCTCCCCCAAATATA 59.706 37.037 0.00 0.00 0.00 0.86
551 552 6.102615 TGTTACATCTAAGCTCCCCCAAATAT 59.897 38.462 0.00 0.00 0.00 1.28
552 553 5.430417 TGTTACATCTAAGCTCCCCCAAATA 59.570 40.000 0.00 0.00 0.00 1.40
553 554 4.229582 TGTTACATCTAAGCTCCCCCAAAT 59.770 41.667 0.00 0.00 0.00 2.32
554 555 3.589735 TGTTACATCTAAGCTCCCCCAAA 59.410 43.478 0.00 0.00 0.00 3.28
555 556 3.186283 TGTTACATCTAAGCTCCCCCAA 58.814 45.455 0.00 0.00 0.00 4.12
556 557 2.840511 TGTTACATCTAAGCTCCCCCA 58.159 47.619 0.00 0.00 0.00 4.96
557 558 3.244596 GGATGTTACATCTAAGCTCCCCC 60.245 52.174 22.48 1.44 0.00 5.40
558 559 3.648545 AGGATGTTACATCTAAGCTCCCC 59.351 47.826 22.48 5.68 0.00 4.81
559 560 4.965200 AGGATGTTACATCTAAGCTCCC 57.035 45.455 22.48 6.35 0.00 4.30
560 561 8.732746 TTTTAAGGATGTTACATCTAAGCTCC 57.267 34.615 22.48 7.91 0.00 4.70
588 589 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
628 629 9.996554 CACTATCACAATAATATGGACAGGTAA 57.003 33.333 0.00 0.00 0.00 2.85
629 630 9.154632 ACACTATCACAATAATATGGACAGGTA 57.845 33.333 0.00 0.00 0.00 3.08
630 631 8.034313 ACACTATCACAATAATATGGACAGGT 57.966 34.615 0.00 0.00 0.00 4.00
631 632 9.996554 TTACACTATCACAATAATATGGACAGG 57.003 33.333 0.00 0.00 0.00 4.00
669 670 7.280652 ACTTACGGAATAAGCGGCTTATAAAAA 59.719 33.333 29.69 19.22 43.76 1.94
670 671 6.762661 ACTTACGGAATAAGCGGCTTATAAAA 59.237 34.615 29.69 18.96 43.76 1.52
671 672 6.282930 ACTTACGGAATAAGCGGCTTATAAA 58.717 36.000 29.69 18.70 43.76 1.40
672 673 5.846203 ACTTACGGAATAAGCGGCTTATAA 58.154 37.500 29.69 20.14 43.76 0.98
673 674 5.458041 ACTTACGGAATAAGCGGCTTATA 57.542 39.130 29.69 15.00 43.76 0.98
674 675 4.332428 ACTTACGGAATAAGCGGCTTAT 57.668 40.909 25.53 25.53 43.76 1.73
675 676 3.806625 ACTTACGGAATAAGCGGCTTA 57.193 42.857 23.37 23.37 43.76 3.09
676 677 2.685850 ACTTACGGAATAAGCGGCTT 57.314 45.000 20.32 20.32 43.76 4.35
677 678 4.332428 AATACTTACGGAATAAGCGGCT 57.668 40.909 0.00 0.00 43.76 5.52
678 679 6.716898 ATAAATACTTACGGAATAAGCGGC 57.283 37.500 0.00 0.00 43.76 6.53
679 680 8.530269 AGAATAAATACTTACGGAATAAGCGG 57.470 34.615 0.00 0.00 43.76 5.52
680 681 8.645487 GGAGAATAAATACTTACGGAATAAGCG 58.355 37.037 0.00 0.00 43.76 4.68
681 682 9.708092 AGGAGAATAAATACTTACGGAATAAGC 57.292 33.333 0.00 0.00 43.76 3.09
684 685 9.991906 CCAAGGAGAATAAATACTTACGGAATA 57.008 33.333 0.00 0.00 0.00 1.75
685 686 8.491958 ACCAAGGAGAATAAATACTTACGGAAT 58.508 33.333 0.00 0.00 0.00 3.01
686 687 7.854337 ACCAAGGAGAATAAATACTTACGGAA 58.146 34.615 0.00 0.00 0.00 4.30
687 688 7.427989 ACCAAGGAGAATAAATACTTACGGA 57.572 36.000 0.00 0.00 0.00 4.69
688 689 9.257651 CTTACCAAGGAGAATAAATACTTACGG 57.742 37.037 0.00 0.00 0.00 4.02
689 690 8.762426 GCTTACCAAGGAGAATAAATACTTACG 58.238 37.037 0.00 0.00 0.00 3.18
690 691 9.053840 GGCTTACCAAGGAGAATAAATACTTAC 57.946 37.037 0.00 0.00 35.26 2.34
691 692 8.774183 TGGCTTACCAAGGAGAATAAATACTTA 58.226 33.333 0.00 0.00 45.37 2.24
692 693 7.639378 TGGCTTACCAAGGAGAATAAATACTT 58.361 34.615 0.00 0.00 45.37 2.24
693 694 7.208064 TGGCTTACCAAGGAGAATAAATACT 57.792 36.000 0.00 0.00 45.37 2.12
709 710 5.105351 ACTGCTCCATTTTTATTGGCTTACC 60.105 40.000 0.00 0.00 34.06 2.85
710 711 5.965922 ACTGCTCCATTTTTATTGGCTTAC 58.034 37.500 0.00 0.00 34.06 2.34
711 712 6.210385 TCAACTGCTCCATTTTTATTGGCTTA 59.790 34.615 0.00 0.00 34.06 3.09
712 713 5.011943 TCAACTGCTCCATTTTTATTGGCTT 59.988 36.000 0.00 0.00 34.06 4.35
713 714 4.527816 TCAACTGCTCCATTTTTATTGGCT 59.472 37.500 0.00 0.00 34.06 4.75
714 715 4.819769 TCAACTGCTCCATTTTTATTGGC 58.180 39.130 0.00 0.00 34.06 4.52
715 716 6.632909 TCATCAACTGCTCCATTTTTATTGG 58.367 36.000 0.00 0.00 35.45 3.16
716 717 6.755141 CCTCATCAACTGCTCCATTTTTATTG 59.245 38.462 0.00 0.00 0.00 1.90
717 718 6.438425 ACCTCATCAACTGCTCCATTTTTATT 59.562 34.615 0.00 0.00 0.00 1.40
718 719 5.954150 ACCTCATCAACTGCTCCATTTTTAT 59.046 36.000 0.00 0.00 0.00 1.40
719 720 5.324409 ACCTCATCAACTGCTCCATTTTTA 58.676 37.500 0.00 0.00 0.00 1.52
720 721 4.154942 ACCTCATCAACTGCTCCATTTTT 58.845 39.130 0.00 0.00 0.00 1.94
721 722 3.771216 ACCTCATCAACTGCTCCATTTT 58.229 40.909 0.00 0.00 0.00 1.82
722 723 3.446442 ACCTCATCAACTGCTCCATTT 57.554 42.857 0.00 0.00 0.00 2.32
723 724 3.446442 AACCTCATCAACTGCTCCATT 57.554 42.857 0.00 0.00 0.00 3.16
724 725 3.446442 AAACCTCATCAACTGCTCCAT 57.554 42.857 0.00 0.00 0.00 3.41
725 726 2.957402 AAACCTCATCAACTGCTCCA 57.043 45.000 0.00 0.00 0.00 3.86
726 727 3.149196 TGAAAACCTCATCAACTGCTCC 58.851 45.455 0.00 0.00 0.00 4.70
727 728 3.190118 CCTGAAAACCTCATCAACTGCTC 59.810 47.826 0.00 0.00 32.14 4.26
728 729 3.152341 CCTGAAAACCTCATCAACTGCT 58.848 45.455 0.00 0.00 32.14 4.24
729 730 2.229784 CCCTGAAAACCTCATCAACTGC 59.770 50.000 0.00 0.00 32.14 4.40
736 737 2.490902 GGGTGTTCCCTGAAAACCTCAT 60.491 50.000 14.25 0.00 46.24 2.90
746 747 5.128932 GGTTTTTCCATGGGTGTTCCCTG 62.129 52.174 13.02 1.34 44.19 4.45
757 758 6.927416 TCATTTCATCTCTGGTTTTTCCATG 58.073 36.000 0.00 0.00 46.12 3.66
830 831 2.369860 TCATCATCCTTCCTCCAATCGG 59.630 50.000 0.00 0.00 0.00 4.18
833 834 3.434167 CCGTTCATCATCCTTCCTCCAAT 60.434 47.826 0.00 0.00 0.00 3.16
838 839 1.137086 CGTCCGTTCATCATCCTTCCT 59.863 52.381 0.00 0.00 0.00 3.36
844 845 1.136305 TCTTCCCGTCCGTTCATCATC 59.864 52.381 0.00 0.00 0.00 2.92
869 870 6.354039 TCGAGGTGAAAACAAAACTCTTAC 57.646 37.500 0.00 0.00 0.00 2.34
913 920 8.219660 AGCTCTTATCTTCTCTATCTACCTCT 57.780 38.462 0.00 0.00 0.00 3.69
965 972 3.094058 GATCGGCTGACGCGATCG 61.094 66.667 15.93 11.69 43.86 3.69
985 992 3.161450 TATGGAGAGGGGTGCGGC 61.161 66.667 0.00 0.00 0.00 6.53
993 1000 5.105957 ACAAATCGATCGATCTATGGAGAGG 60.106 44.000 29.48 12.18 34.35 3.69
999 1006 6.847400 ACTCCTACAAATCGATCGATCTATG 58.153 40.000 29.48 26.71 33.08 2.23
1014 1021 5.106038 CCATTGACACGTACTACTCCTACAA 60.106 44.000 0.00 0.00 0.00 2.41
1228 1241 1.536284 GGCTGAATACGTCGGAGAAGG 60.536 57.143 0.00 0.00 41.22 3.46
1229 1242 1.536284 GGGCTGAATACGTCGGAGAAG 60.536 57.143 0.00 0.00 39.69 2.85
1230 1243 0.458669 GGGCTGAATACGTCGGAGAA 59.541 55.000 0.00 0.00 39.69 2.87
1231 1244 0.681887 TGGGCTGAATACGTCGGAGA 60.682 55.000 0.00 0.00 34.07 3.71
1232 1245 0.389391 ATGGGCTGAATACGTCGGAG 59.611 55.000 0.00 0.00 34.07 4.63
1233 1246 0.387929 GATGGGCTGAATACGTCGGA 59.612 55.000 0.00 0.00 34.07 4.55
1279 1317 1.145803 CTTTGGGTTCTCGTCGTTCC 58.854 55.000 0.00 0.00 0.00 3.62
1310 1348 2.582498 CGGTCGGCGATGGAGAAC 60.582 66.667 14.79 0.00 0.00 3.01
1719 11465 3.717294 AGGGGCGCCGAATTCACT 61.717 61.111 22.54 6.56 0.00 3.41
1817 11564 7.393796 CCAGTATAGGATACGGAATAGAACTGT 59.606 40.741 0.00 0.00 46.39 3.55
1826 11573 3.817084 CGACACCAGTATAGGATACGGAA 59.183 47.826 11.74 0.00 46.39 4.30
1832 11579 3.223435 CTCCACGACACCAGTATAGGAT 58.777 50.000 0.00 0.00 0.00 3.24
1916 11675 1.168714 GTGAGCCGCCTTCTTCAATT 58.831 50.000 0.00 0.00 0.00 2.32
2023 11797 1.327690 GCACGTCCACCTATCCTGGA 61.328 60.000 0.00 0.00 35.29 3.86
2108 11882 3.542676 ACCCCGACGAACAGTGCA 61.543 61.111 0.00 0.00 0.00 4.57
2220 11994 1.207089 CGATAGGTCCTTGGTCTTGCA 59.793 52.381 0.00 0.00 0.00 4.08
2255 12029 1.466856 TGGGCTCATCATTGCAACTC 58.533 50.000 0.00 0.00 0.00 3.01
2359 12133 2.742372 GCGGCACCGAGAACATGT 60.742 61.111 14.43 0.00 42.83 3.21
2483 12286 8.359060 TGGTTTCAACAAATAGTGCAAATTAC 57.641 30.769 0.00 0.00 0.00 1.89
2498 12301 8.954950 AATTATTGTGTTTCATGGTTTCAACA 57.045 26.923 0.00 0.00 0.00 3.33
2589 12392 1.303282 GGAGGCGGTGGATTCCTTT 59.697 57.895 3.95 0.00 0.00 3.11
2591 12394 3.090532 GGGAGGCGGTGGATTCCT 61.091 66.667 3.95 0.00 0.00 3.36
2592 12395 3.406595 CTGGGAGGCGGTGGATTCC 62.407 68.421 0.00 0.00 0.00 3.01
2593 12396 2.190578 CTGGGAGGCGGTGGATTC 59.809 66.667 0.00 0.00 0.00 2.52
2599 12402 3.083997 GATGGACTGGGAGGCGGT 61.084 66.667 0.00 0.00 0.00 5.68
2648 12451 6.507958 TGGATTTTAGATTGCGACAATTGA 57.492 33.333 13.59 0.00 0.00 2.57
2661 12464 5.843673 TTGTTGCACACTTGGATTTTAGA 57.156 34.783 0.00 0.00 0.00 2.10
2663 12466 7.856145 AAAATTGTTGCACACTTGGATTTTA 57.144 28.000 0.00 0.00 0.00 1.52
2664 12467 6.756299 AAAATTGTTGCACACTTGGATTTT 57.244 29.167 0.00 0.00 0.00 1.82
2799 12604 8.927721 TCATAAGTTTTGATGATTTGTTGCATG 58.072 29.630 0.00 0.00 0.00 4.06
2801 12606 8.883954 TTCATAAGTTTTGATGATTTGTTGCA 57.116 26.923 0.00 0.00 32.27 4.08
2802 12607 9.584839 GTTTCATAAGTTTTGATGATTTGTTGC 57.415 29.630 0.00 0.00 32.27 4.17
2816 12659 8.472007 TGTTGGTTCCTATGTTTCATAAGTTT 57.528 30.769 0.00 0.00 0.00 2.66
2825 12668 3.823873 TGCGAATGTTGGTTCCTATGTTT 59.176 39.130 0.00 0.00 0.00 2.83
2840 12683 7.337150 AGTTGTTTCAATATTGTTGCGAATG 57.663 32.000 14.97 0.00 0.00 2.67
2841 12684 7.945033 AAGTTGTTTCAATATTGTTGCGAAT 57.055 28.000 14.97 3.52 0.00 3.34
2852 12695 5.840715 TCATGCTGCAAAGTTGTTTCAATA 58.159 33.333 6.36 0.00 0.00 1.90
2853 12696 4.695396 TCATGCTGCAAAGTTGTTTCAAT 58.305 34.783 6.36 0.00 0.00 2.57
2898 12741 5.820947 ACGGAACAGAGTCAAAATAAACAGT 59.179 36.000 0.00 0.00 0.00 3.55
2899 12742 6.136071 CACGGAACAGAGTCAAAATAAACAG 58.864 40.000 0.00 0.00 0.00 3.16
2904 12747 3.496884 GTGCACGGAACAGAGTCAAAATA 59.503 43.478 0.00 0.00 0.00 1.40
2931 12774 0.110464 GTTCGAGCACAAGCAGCTTC 60.110 55.000 4.07 0.00 43.58 3.86
2938 12781 1.723542 CAGCACTAGTTCGAGCACAAG 59.276 52.381 1.01 0.00 0.00 3.16
2954 12797 5.089434 ACATAGGGAGATGATATGTCAGCA 58.911 41.667 10.46 0.00 43.12 4.41
2955 12798 5.674052 ACATAGGGAGATGATATGTCAGC 57.326 43.478 0.00 0.00 41.02 4.26
2982 12825 4.080299 GGGAGAGGCTTTCAGAAATAAGGA 60.080 45.833 7.40 0.00 0.00 3.36
3007 12850 7.462571 AAAACCAATACCCAAGTATTCTCAC 57.537 36.000 0.00 0.00 44.23 3.51
3017 12872 9.771140 ATGGTAAACTATAAAACCAATACCCAA 57.229 29.630 0.00 0.00 44.73 4.12
3035 12890 9.937175 GCATCTAAATTGAGTAAGATGGTAAAC 57.063 33.333 11.83 0.00 43.55 2.01
3039 12894 9.851686 TTATGCATCTAAATTGAGTAAGATGGT 57.148 29.630 0.19 0.00 43.55 3.55
3077 12932 6.412362 AGCTTATTGCACTAGTGTAGCTAT 57.588 37.500 23.44 13.81 45.94 2.97
3084 12939 5.352293 TGACATGAAGCTTATTGCACTAGTG 59.648 40.000 18.93 18.93 45.94 2.74
3205 13061 3.146066 GCACACAAATGGTAGTTCAGGA 58.854 45.455 0.00 0.00 0.00 3.86
3209 13065 6.072728 TGACTTATGCACACAAATGGTAGTTC 60.073 38.462 0.00 0.00 0.00 3.01
3211 13067 5.181245 GTGACTTATGCACACAAATGGTAGT 59.819 40.000 0.00 0.00 36.31 2.73
3212 13068 5.181056 TGTGACTTATGCACACAAATGGTAG 59.819 40.000 4.73 0.00 41.00 3.18
3214 13070 3.888323 TGTGACTTATGCACACAAATGGT 59.112 39.130 4.73 0.00 41.00 3.55
3215 13071 4.502171 TGTGACTTATGCACACAAATGG 57.498 40.909 4.73 0.00 41.00 3.16
3285 13141 5.681337 TTGATGCAGACGTCAATTTACAA 57.319 34.783 19.50 13.01 44.90 2.41
3299 13156 1.241165 TCACACTGGCTTTGATGCAG 58.759 50.000 0.00 0.00 34.04 4.41
3306 13163 4.160252 ACTGTTTCAATTCACACTGGCTTT 59.840 37.500 0.00 0.00 0.00 3.51
3317 13174 2.036346 AGGCCAAGCACTGTTTCAATTC 59.964 45.455 5.01 0.00 0.00 2.17
3328 13185 3.016736 ACACAATATACAGGCCAAGCAC 58.983 45.455 5.01 0.00 0.00 4.40
3344 13201 7.230510 AGCTATTTGGTTCATAACTCAACACAA 59.769 33.333 0.00 0.00 0.00 3.33
3405 13262 3.181477 TGTGTCCAAAACTCCAAATGCAG 60.181 43.478 0.00 0.00 0.00 4.41
3408 13265 3.068590 AGCTGTGTCCAAAACTCCAAATG 59.931 43.478 0.00 0.00 0.00 2.32
3411 13268 2.435372 AGCTGTGTCCAAAACTCCAA 57.565 45.000 0.00 0.00 0.00 3.53
3414 13271 5.500645 ACTAAAAGCTGTGTCCAAAACTC 57.499 39.130 0.00 0.00 0.00 3.01
3415 13272 5.914898 AACTAAAAGCTGTGTCCAAAACT 57.085 34.783 0.00 0.00 0.00 2.66
3416 13273 6.096695 TCAAACTAAAAGCTGTGTCCAAAAC 58.903 36.000 0.00 0.00 0.00 2.43
3417 13274 6.274157 TCAAACTAAAAGCTGTGTCCAAAA 57.726 33.333 0.00 0.00 0.00 2.44
3418 13275 5.906113 TCAAACTAAAAGCTGTGTCCAAA 57.094 34.783 0.00 0.00 0.00 3.28
3419 13276 5.906113 TTCAAACTAAAAGCTGTGTCCAA 57.094 34.783 0.00 0.00 0.00 3.53
3420 13277 5.650266 TCTTTCAAACTAAAAGCTGTGTCCA 59.350 36.000 0.00 0.00 34.43 4.02
3421 13278 6.038271 TCTCTTTCAAACTAAAAGCTGTGTCC 59.962 38.462 0.00 0.00 34.43 4.02
3422 13279 7.016361 TCTCTTTCAAACTAAAAGCTGTGTC 57.984 36.000 0.00 0.00 34.43 3.67
3428 13285 9.353999 TCACTTTTTCTCTTTCAAACTAAAAGC 57.646 29.630 0.00 0.00 35.58 3.51
3435 13292 7.486232 CAGACCTTCACTTTTTCTCTTTCAAAC 59.514 37.037 0.00 0.00 0.00 2.93
3451 13308 4.099419 ACAACAAAAATCCCAGACCTTCAC 59.901 41.667 0.00 0.00 0.00 3.18
3458 13315 3.513515 GCCCATACAACAAAAATCCCAGA 59.486 43.478 0.00 0.00 0.00 3.86
3462 13319 5.914898 ACTAGCCCATACAACAAAAATCC 57.085 39.130 0.00 0.00 0.00 3.01
3472 13329 3.417101 CAACCACAAACTAGCCCATACA 58.583 45.455 0.00 0.00 0.00 2.29
3500 13357 8.828772 CAGATTCCAACTATCTACGTTTCCACG 61.829 44.444 0.00 0.00 40.08 4.94
3507 13364 8.743085 TTAGTACAGATTCCAACTATCTACGT 57.257 34.615 0.00 0.00 31.32 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.