Multiple sequence alignment - TraesCS1B01G055800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G055800 chr1B 100.000 3926 0 0 1 3926 38831107 38835032 0.000000e+00 7251.0
1 TraesCS1B01G055800 chr1B 87.226 274 7 7 3061 3312 246423201 246422934 1.790000e-73 287.0
2 TraesCS1B01G055800 chr1B 93.407 91 5 1 2954 3044 246426553 246426464 2.460000e-27 134.0
3 TraesCS1B01G055800 chr1B 83.916 143 17 5 227 367 656926677 656926815 8.850000e-27 132.0
4 TraesCS1B01G055800 chr1B 87.302 63 6 2 7 67 4789387 4789449 1.960000e-08 71.3
5 TraesCS1B01G055800 chr1B 88.889 54 4 1 10 63 633321926 633321875 9.110000e-07 65.8
6 TraesCS1B01G055800 chr1D 89.447 3525 210 69 453 3904 22626475 22623040 0.000000e+00 4300.0
7 TraesCS1B01G055800 chr1D 84.360 211 21 9 68 269 217297400 217297193 3.090000e-46 196.0
8 TraesCS1B01G055800 chr1D 83.333 204 33 1 67 269 147414671 147414874 1.860000e-43 187.0
9 TraesCS1B01G055800 chr1D 80.892 157 21 6 3665 3820 22623728 22623580 8.910000e-22 115.0
10 TraesCS1B01G055800 chr1D 95.000 60 3 0 4 63 22626913 22626854 1.160000e-15 95.3
11 TraesCS1B01G055800 chr1D 92.857 42 2 1 372 413 18071030 18070990 4.240000e-05 60.2
12 TraesCS1B01G055800 chr1D 91.111 45 3 1 370 413 168326724 168326680 4.240000e-05 60.2
13 TraesCS1B01G055800 chr1D 90.698 43 3 1 561 603 470934078 470934037 5.480000e-04 56.5
14 TraesCS1B01G055800 chr1A 89.791 2684 185 45 407 3044 23815648 23818288 0.000000e+00 3356.0
15 TraesCS1B01G055800 chr1A 80.126 317 34 13 3036 3348 23818316 23818607 3.980000e-50 209.0
16 TraesCS1B01G055800 chr1A 90.968 155 13 1 3691 3845 23818494 23818647 1.430000e-49 207.0
17 TraesCS1B01G055800 chr1A 97.368 38 1 0 373 410 517394419 517394456 9.110000e-07 65.8
18 TraesCS1B01G055800 chr1A 95.000 40 2 0 373 412 580042350 580042389 3.280000e-06 63.9
19 TraesCS1B01G055800 chr4B 87.389 674 38 20 2953 3599 663555627 663556280 0.000000e+00 730.0
20 TraesCS1B01G055800 chr4B 78.202 1179 192 45 1422 2566 435486047 435484900 0.000000e+00 693.0
21 TraesCS1B01G055800 chr4A 77.849 1255 213 48 1340 2566 113331719 113330502 0.000000e+00 717.0
22 TraesCS1B01G055800 chr4A 90.500 400 23 6 3447 3833 604196436 604196833 7.520000e-142 514.0
23 TraesCS1B01G055800 chr4A 92.157 51 3 1 2 52 674727015 674726966 1.960000e-08 71.3
24 TraesCS1B01G055800 chr4A 90.385 52 5 0 10 61 674594868 674594817 7.040000e-08 69.4
25 TraesCS1B01G055800 chr5B 86.834 676 40 21 2952 3599 570295378 570294724 0.000000e+00 710.0
26 TraesCS1B01G055800 chr5B 84.459 148 13 8 226 368 665016507 665016365 1.900000e-28 137.0
27 TraesCS1B01G055800 chr5B 97.297 37 1 0 372 408 76648760 76648796 3.280000e-06 63.9
28 TraesCS1B01G055800 chr5B 100.000 28 0 0 573 600 339925147 339925174 7.000000e-03 52.8
29 TraesCS1B01G055800 chr4D 77.404 1248 217 47 1340 2553 352118507 352119723 0.000000e+00 682.0
30 TraesCS1B01G055800 chr4D 89.976 409 26 6 3437 3832 60091596 60092002 7.520000e-142 514.0
31 TraesCS1B01G055800 chr5D 87.695 577 39 11 3380 3926 26628496 26629070 0.000000e+00 643.0
32 TraesCS1B01G055800 chr5D 85.811 148 13 6 225 367 376706223 376706367 2.440000e-32 150.0
33 TraesCS1B01G055800 chr3D 77.661 1043 186 31 1550 2553 558784794 558785828 3.380000e-165 592.0
34 TraesCS1B01G055800 chr3A 80.236 678 120 13 1550 2221 695130797 695131466 7.580000e-137 497.0
35 TraesCS1B01G055800 chr3A 94.118 51 0 2 4 54 444536717 444536670 1.510000e-09 75.0
36 TraesCS1B01G055800 chr3A 88.710 62 5 2 10 70 523307646 523307586 1.510000e-09 75.0
37 TraesCS1B01G055800 chr3A 90.909 44 4 0 372 415 297774314 297774357 4.240000e-05 60.2
38 TraesCS1B01G055800 chr3B 79.407 675 121 14 1550 2216 741601645 741602309 9.940000e-126 460.0
39 TraesCS1B01G055800 chr2D 87.500 208 23 3 64 269 216045475 216045681 1.820000e-58 237.0
40 TraesCS1B01G055800 chr2D 83.744 203 30 3 66 267 605399884 605399684 5.180000e-44 189.0
41 TraesCS1B01G055800 chr2D 93.182 44 2 1 370 412 105964243 105964200 3.280000e-06 63.9
42 TraesCS1B01G055800 chr2D 87.755 49 5 1 558 606 73522013 73521966 5.480000e-04 56.5
43 TraesCS1B01G055800 chr6B 87.192 203 25 1 68 269 421734143 421734345 3.050000e-56 230.0
44 TraesCS1B01G055800 chr6B 82.877 146 22 2 224 367 200115110 200115254 1.150000e-25 128.0
45 TraesCS1B01G055800 chr6B 91.304 46 3 1 373 417 505194509 505194554 1.180000e-05 62.1
46 TraesCS1B01G055800 chr6D 84.889 225 25 7 52 267 341120865 341120641 6.610000e-53 219.0
47 TraesCS1B01G055800 chr6D 74.163 209 39 12 411 606 284405516 284405310 5.440000e-09 73.1
48 TraesCS1B01G055800 chr5A 85.714 203 24 4 69 267 706929957 706929756 3.980000e-50 209.0
49 TraesCS1B01G055800 chr2A 85.128 195 26 3 75 267 75638444 75638251 3.090000e-46 196.0
50 TraesCS1B01G055800 chr2A 90.566 53 4 1 10 61 680101612 680101664 7.040000e-08 69.4
51 TraesCS1B01G055800 chr7B 83.251 203 32 2 69 269 326444785 326444987 6.700000e-43 185.0
52 TraesCS1B01G055800 chr7A 83.217 143 19 4 228 367 48839779 48839919 4.120000e-25 126.0
53 TraesCS1B01G055800 chr6A 77.519 129 22 7 423 547 404702704 404702579 1.960000e-08 71.3
54 TraesCS1B01G055800 chr6A 89.130 46 5 0 373 418 586572763 586572718 1.520000e-04 58.4
55 TraesCS1B01G055800 chr2B 88.333 60 5 2 11 69 650481678 650481736 1.960000e-08 71.3
56 TraesCS1B01G055800 chr2B 97.222 36 1 0 571 606 111453388 111453353 1.180000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G055800 chr1B 38831107 38835032 3925 False 7251.000000 7251 100.000000 1 3926 1 chr1B.!!$F2 3925
1 TraesCS1B01G055800 chr1B 246422934 246426553 3619 True 210.500000 287 90.316500 2954 3312 2 chr1B.!!$R2 358
2 TraesCS1B01G055800 chr1D 22623040 22626913 3873 True 1503.433333 4300 88.446333 4 3904 3 chr1D.!!$R5 3900
3 TraesCS1B01G055800 chr1A 23815648 23818647 2999 False 1257.333333 3356 86.961667 407 3845 3 chr1A.!!$F3 3438
4 TraesCS1B01G055800 chr4B 663555627 663556280 653 False 730.000000 730 87.389000 2953 3599 1 chr4B.!!$F1 646
5 TraesCS1B01G055800 chr4B 435484900 435486047 1147 True 693.000000 693 78.202000 1422 2566 1 chr4B.!!$R1 1144
6 TraesCS1B01G055800 chr4A 113330502 113331719 1217 True 717.000000 717 77.849000 1340 2566 1 chr4A.!!$R1 1226
7 TraesCS1B01G055800 chr5B 570294724 570295378 654 True 710.000000 710 86.834000 2952 3599 1 chr5B.!!$R1 647
8 TraesCS1B01G055800 chr4D 352118507 352119723 1216 False 682.000000 682 77.404000 1340 2553 1 chr4D.!!$F2 1213
9 TraesCS1B01G055800 chr5D 26628496 26629070 574 False 643.000000 643 87.695000 3380 3926 1 chr5D.!!$F1 546
10 TraesCS1B01G055800 chr3D 558784794 558785828 1034 False 592.000000 592 77.661000 1550 2553 1 chr3D.!!$F1 1003
11 TraesCS1B01G055800 chr3A 695130797 695131466 669 False 497.000000 497 80.236000 1550 2221 1 chr3A.!!$F2 671
12 TraesCS1B01G055800 chr3B 741601645 741602309 664 False 460.000000 460 79.407000 1550 2216 1 chr3B.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 1015 0.662374 ACAGTTGAGGCGAACGTACG 60.662 55.0 15.01 15.01 0.0 3.67 F
1307 1674 0.114168 CCACAAGGTTCCATTCCCCA 59.886 55.0 0.00 0.00 0.0 4.96 F
2229 2605 0.108329 ACTTCGACTACATTGCCCGG 60.108 55.0 0.00 0.00 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 2239 0.526211 CGTAGTGGCAGCTGTAGTGA 59.474 55.0 16.64 0.0 0.0 3.41 R
2793 3214 0.524414 CACGGACGACATACTGGACA 59.476 55.0 0.00 0.0 0.0 4.02 R
3759 7510 0.031178 CAGGTTGGTTCACTTGCAGC 59.969 55.0 0.00 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.744570 CACCAATCGTGTCCGCTATATAT 58.255 43.478 0.00 0.00 37.73 0.86
62 63 5.886992 CACCAATCGTGTCCGCTATATATA 58.113 41.667 0.00 0.00 37.73 0.86
63 64 5.971792 CACCAATCGTGTCCGCTATATATAG 59.028 44.000 14.45 14.45 37.73 1.31
64 65 5.651139 ACCAATCGTGTCCGCTATATATAGT 59.349 40.000 18.81 0.00 32.96 2.12
65 66 6.152323 ACCAATCGTGTCCGCTATATATAGTT 59.848 38.462 18.81 2.09 32.96 2.24
66 67 7.337689 ACCAATCGTGTCCGCTATATATAGTTA 59.662 37.037 18.81 4.65 32.96 2.24
67 68 8.350722 CCAATCGTGTCCGCTATATATAGTTAT 58.649 37.037 18.81 2.16 32.96 1.89
86 87 9.805204 ATAGTTATATACTCCCTCCATTCCATT 57.195 33.333 0.00 0.00 38.33 3.16
88 89 9.805204 AGTTATATACTCCCTCCATTCCATTAT 57.195 33.333 0.00 0.00 28.23 1.28
94 95 7.516450 ACTCCCTCCATTCCATTATATTAGG 57.484 40.000 0.00 0.00 0.00 2.69
95 96 7.031917 ACTCCCTCCATTCCATTATATTAGGT 58.968 38.462 0.00 0.00 0.00 3.08
96 97 7.037297 ACTCCCTCCATTCCATTATATTAGGTG 60.037 40.741 0.00 0.00 0.00 4.00
97 98 6.797540 TCCCTCCATTCCATTATATTAGGTGT 59.202 38.462 0.00 0.00 0.00 4.16
98 99 7.964867 TCCCTCCATTCCATTATATTAGGTGTA 59.035 37.037 0.00 0.00 0.00 2.90
99 100 8.781951 CCCTCCATTCCATTATATTAGGTGTAT 58.218 37.037 0.00 0.00 0.00 2.29
133 134 8.870160 TGATAAAATTGCATAATGTAAGGTGC 57.130 30.769 0.00 0.00 38.05 5.01
134 135 8.473219 TGATAAAATTGCATAATGTAAGGTGCA 58.527 29.630 0.00 0.00 44.97 4.57
135 136 9.480053 GATAAAATTGCATAATGTAAGGTGCAT 57.520 29.630 0.00 0.00 45.80 3.96
136 137 9.835389 ATAAAATTGCATAATGTAAGGTGCATT 57.165 25.926 0.00 0.00 45.80 3.56
137 138 8.564509 AAAATTGCATAATGTAAGGTGCATTT 57.435 26.923 0.00 0.75 45.80 2.32
138 139 7.542534 AATTGCATAATGTAAGGTGCATTTG 57.457 32.000 0.00 0.00 45.80 2.32
139 140 5.657826 TGCATAATGTAAGGTGCATTTGT 57.342 34.783 0.00 0.00 42.13 2.83
140 141 6.035368 TGCATAATGTAAGGTGCATTTGTT 57.965 33.333 0.00 0.00 42.13 2.83
141 142 6.098679 TGCATAATGTAAGGTGCATTTGTTC 58.901 36.000 0.00 0.00 42.13 3.18
142 143 6.071447 TGCATAATGTAAGGTGCATTTGTTCT 60.071 34.615 0.00 0.00 42.13 3.01
143 144 7.121907 TGCATAATGTAAGGTGCATTTGTTCTA 59.878 33.333 0.00 0.00 42.13 2.10
144 145 7.973388 GCATAATGTAAGGTGCATTTGTTCTAA 59.027 33.333 0.00 0.00 37.65 2.10
147 148 8.986477 AATGTAAGGTGCATTTGTTCTAATTC 57.014 30.769 0.00 0.00 33.24 2.17
148 149 7.759489 TGTAAGGTGCATTTGTTCTAATTCT 57.241 32.000 0.00 0.00 0.00 2.40
149 150 8.856153 TGTAAGGTGCATTTGTTCTAATTCTA 57.144 30.769 0.00 0.00 0.00 2.10
150 151 9.461312 TGTAAGGTGCATTTGTTCTAATTCTAT 57.539 29.630 0.00 0.00 0.00 1.98
169 170 8.829373 ATTCTATATAATTCCATTCTTGGCCC 57.171 34.615 0.00 0.00 43.29 5.80
170 171 6.731467 TCTATATAATTCCATTCTTGGCCCC 58.269 40.000 0.00 0.00 43.29 5.80
171 172 2.470057 TAATTCCATTCTTGGCCCCC 57.530 50.000 0.00 0.00 43.29 5.40
198 199 6.830873 AAAATGGAAAGGATCTCTCACTTG 57.169 37.500 0.00 0.00 0.00 3.16
199 200 5.768980 AATGGAAAGGATCTCTCACTTGA 57.231 39.130 0.00 0.00 0.00 3.02
200 201 5.972327 ATGGAAAGGATCTCTCACTTGAT 57.028 39.130 0.00 0.00 0.00 2.57
201 202 5.768980 TGGAAAGGATCTCTCACTTGATT 57.231 39.130 0.00 0.00 0.00 2.57
202 203 5.494724 TGGAAAGGATCTCTCACTTGATTG 58.505 41.667 0.00 0.00 0.00 2.67
203 204 4.335037 GGAAAGGATCTCTCACTTGATTGC 59.665 45.833 0.00 0.00 0.00 3.56
204 205 4.840716 AAGGATCTCTCACTTGATTGCT 57.159 40.909 0.00 0.00 0.00 3.91
205 206 4.840716 AGGATCTCTCACTTGATTGCTT 57.159 40.909 0.00 0.00 0.00 3.91
206 207 4.515361 AGGATCTCTCACTTGATTGCTTG 58.485 43.478 0.00 0.00 0.00 4.01
207 208 4.019501 AGGATCTCTCACTTGATTGCTTGT 60.020 41.667 0.00 0.00 0.00 3.16
208 209 5.188555 AGGATCTCTCACTTGATTGCTTGTA 59.811 40.000 0.00 0.00 0.00 2.41
209 210 6.054295 GGATCTCTCACTTGATTGCTTGTAT 58.946 40.000 0.00 0.00 0.00 2.29
210 211 6.202570 GGATCTCTCACTTGATTGCTTGTATC 59.797 42.308 0.00 0.00 0.00 2.24
211 212 6.291648 TCTCTCACTTGATTGCTTGTATCT 57.708 37.500 0.00 0.00 0.00 1.98
212 213 6.336566 TCTCTCACTTGATTGCTTGTATCTC 58.663 40.000 0.00 0.00 0.00 2.75
213 214 6.154192 TCTCTCACTTGATTGCTTGTATCTCT 59.846 38.462 0.00 0.00 0.00 3.10
214 215 6.336566 TCTCACTTGATTGCTTGTATCTCTC 58.663 40.000 0.00 0.00 0.00 3.20
215 216 5.423015 TCACTTGATTGCTTGTATCTCTCC 58.577 41.667 0.00 0.00 0.00 3.71
216 217 5.188555 TCACTTGATTGCTTGTATCTCTCCT 59.811 40.000 0.00 0.00 0.00 3.69
217 218 5.879223 CACTTGATTGCTTGTATCTCTCCTT 59.121 40.000 0.00 0.00 0.00 3.36
218 219 7.044181 CACTTGATTGCTTGTATCTCTCCTTA 58.956 38.462 0.00 0.00 0.00 2.69
219 220 7.714377 CACTTGATTGCTTGTATCTCTCCTTAT 59.286 37.037 0.00 0.00 0.00 1.73
220 221 8.928448 ACTTGATTGCTTGTATCTCTCCTTATA 58.072 33.333 0.00 0.00 0.00 0.98
221 222 9.421806 CTTGATTGCTTGTATCTCTCCTTATAG 57.578 37.037 0.00 0.00 0.00 1.31
222 223 8.712228 TGATTGCTTGTATCTCTCCTTATAGA 57.288 34.615 0.00 0.00 0.00 1.98
223 224 8.801299 TGATTGCTTGTATCTCTCCTTATAGAG 58.199 37.037 0.00 0.00 43.72 2.43
250 251 8.980481 AAAAAGAAAAACTATCTCTCACCTGA 57.020 30.769 0.00 0.00 0.00 3.86
251 252 9.579932 AAAAAGAAAAACTATCTCTCACCTGAT 57.420 29.630 0.00 0.00 0.00 2.90
252 253 9.579932 AAAAGAAAAACTATCTCTCACCTGATT 57.420 29.630 0.00 0.00 0.00 2.57
253 254 8.558973 AAGAAAAACTATCTCTCACCTGATTG 57.441 34.615 0.00 0.00 0.00 2.67
254 255 7.684529 AGAAAAACTATCTCTCACCTGATTGT 58.315 34.615 0.00 0.00 31.98 2.71
255 256 8.160106 AGAAAAACTATCTCTCACCTGATTGTT 58.840 33.333 0.00 0.00 39.15 2.83
256 257 8.697507 AAAAACTATCTCTCACCTGATTGTTT 57.302 30.769 0.00 0.00 44.16 2.83
257 258 7.678947 AAACTATCTCTCACCTGATTGTTTG 57.321 36.000 12.10 0.00 42.37 2.93
258 259 6.365970 ACTATCTCTCACCTGATTGTTTGT 57.634 37.500 0.00 0.00 0.00 2.83
259 260 7.482169 ACTATCTCTCACCTGATTGTTTGTA 57.518 36.000 0.00 0.00 0.00 2.41
260 261 8.083828 ACTATCTCTCACCTGATTGTTTGTAT 57.916 34.615 0.00 0.00 0.00 2.29
261 262 8.200792 ACTATCTCTCACCTGATTGTTTGTATC 58.799 37.037 0.00 0.00 0.00 2.24
262 263 6.611613 TCTCTCACCTGATTGTTTGTATCT 57.388 37.500 0.00 0.00 0.00 1.98
263 264 6.634805 TCTCTCACCTGATTGTTTGTATCTC 58.365 40.000 0.00 0.00 0.00 2.75
264 265 6.438741 TCTCTCACCTGATTGTTTGTATCTCT 59.561 38.462 0.00 0.00 0.00 3.10
265 266 7.009179 TCTCACCTGATTGTTTGTATCTCTT 57.991 36.000 0.00 0.00 0.00 2.85
266 267 7.099764 TCTCACCTGATTGTTTGTATCTCTTC 58.900 38.462 0.00 0.00 0.00 2.87
267 268 7.009179 TCACCTGATTGTTTGTATCTCTTCT 57.991 36.000 0.00 0.00 0.00 2.85
268 269 7.453393 TCACCTGATTGTTTGTATCTCTTCTT 58.547 34.615 0.00 0.00 0.00 2.52
269 270 7.388776 TCACCTGATTGTTTGTATCTCTTCTTG 59.611 37.037 0.00 0.00 0.00 3.02
270 271 7.173907 CACCTGATTGTTTGTATCTCTTCTTGT 59.826 37.037 0.00 0.00 0.00 3.16
271 272 8.375506 ACCTGATTGTTTGTATCTCTTCTTGTA 58.624 33.333 0.00 0.00 0.00 2.41
272 273 8.877779 CCTGATTGTTTGTATCTCTTCTTGTAG 58.122 37.037 0.00 0.00 0.00 2.74
273 274 9.645059 CTGATTGTTTGTATCTCTTCTTGTAGA 57.355 33.333 0.00 0.00 0.00 2.59
274 275 9.645059 TGATTGTTTGTATCTCTTCTTGTAGAG 57.355 33.333 0.00 0.00 42.46 2.43
288 289 9.892130 TCTTCTTGTAGAGAAAAAGAGAAAACT 57.108 29.630 0.00 0.00 43.56 2.66
306 307 8.945481 AGAAAACTATCTCTCTCATGATTGTG 57.055 34.615 0.00 0.00 31.33 3.33
307 308 8.538701 AGAAAACTATCTCTCTCATGATTGTGT 58.461 33.333 0.00 0.00 31.33 3.72
308 309 9.160496 GAAAACTATCTCTCTCATGATTGTGTT 57.840 33.333 0.00 0.00 31.87 3.32
309 310 9.512588 AAAACTATCTCTCTCATGATTGTGTTT 57.487 29.630 0.00 0.00 31.33 2.83
310 311 8.715191 AACTATCTCTCTCATGATTGTGTTTC 57.285 34.615 0.00 0.00 31.33 2.78
311 312 7.271511 ACTATCTCTCTCATGATTGTGTTTCC 58.728 38.462 0.00 0.00 30.17 3.13
312 313 4.836825 TCTCTCTCATGATTGTGTTTCCC 58.163 43.478 0.00 0.00 0.00 3.97
313 314 4.533707 TCTCTCTCATGATTGTGTTTCCCT 59.466 41.667 0.00 0.00 0.00 4.20
314 315 5.013495 TCTCTCTCATGATTGTGTTTCCCTT 59.987 40.000 0.00 0.00 0.00 3.95
315 316 5.634118 TCTCTCATGATTGTGTTTCCCTTT 58.366 37.500 0.00 0.00 0.00 3.11
316 317 6.070656 TCTCTCATGATTGTGTTTCCCTTTT 58.929 36.000 0.00 0.00 0.00 2.27
317 318 6.550854 TCTCTCATGATTGTGTTTCCCTTTTT 59.449 34.615 0.00 0.00 0.00 1.94
342 343 9.801873 TTTTCCTAGCATAAGTGATTTATTTGC 57.198 29.630 0.00 0.00 30.69 3.68
343 344 7.510549 TCCTAGCATAAGTGATTTATTTGCC 57.489 36.000 0.00 0.00 30.81 4.52
344 345 6.204688 TCCTAGCATAAGTGATTTATTTGCCG 59.795 38.462 0.00 0.00 30.81 5.69
345 346 4.610945 AGCATAAGTGATTTATTTGCCGC 58.389 39.130 0.00 0.00 30.81 6.53
346 347 4.339247 AGCATAAGTGATTTATTTGCCGCT 59.661 37.500 0.00 0.00 30.81 5.52
347 348 5.530915 AGCATAAGTGATTTATTTGCCGCTA 59.469 36.000 0.00 0.00 30.81 4.26
348 349 6.039270 AGCATAAGTGATTTATTTGCCGCTAA 59.961 34.615 0.00 0.00 30.81 3.09
349 350 6.863126 GCATAAGTGATTTATTTGCCGCTAAT 59.137 34.615 5.39 5.39 29.37 1.73
350 351 7.061094 GCATAAGTGATTTATTTGCCGCTAATC 59.939 37.037 3.19 0.00 29.37 1.75
351 352 6.449635 AAGTGATTTATTTGCCGCTAATCA 57.550 33.333 3.19 0.00 34.00 2.57
352 353 6.449635 AGTGATTTATTTGCCGCTAATCAA 57.550 33.333 3.19 0.39 37.08 2.57
353 354 7.042797 AGTGATTTATTTGCCGCTAATCAAT 57.957 32.000 3.19 5.18 37.08 2.57
354 355 6.919662 AGTGATTTATTTGCCGCTAATCAATG 59.080 34.615 10.43 0.00 37.08 2.82
355 356 6.917477 GTGATTTATTTGCCGCTAATCAATGA 59.083 34.615 10.43 1.91 37.08 2.57
356 357 7.596248 GTGATTTATTTGCCGCTAATCAATGAT 59.404 33.333 10.43 0.00 37.08 2.45
357 358 8.143193 TGATTTATTTGCCGCTAATCAATGATT 58.857 29.630 13.43 13.43 33.61 2.57
358 359 8.891671 ATTTATTTGCCGCTAATCAATGATTT 57.108 26.923 14.15 0.00 33.95 2.17
359 360 9.979578 ATTTATTTGCCGCTAATCAATGATTTA 57.020 25.926 14.15 0.12 33.95 1.40
360 361 9.462174 TTTATTTGCCGCTAATCAATGATTTAG 57.538 29.630 14.15 10.10 33.95 1.85
361 362 6.691754 TTTGCCGCTAATCAATGATTTAGA 57.308 33.333 14.15 0.00 33.95 2.10
362 363 5.673337 TGCCGCTAATCAATGATTTAGAC 57.327 39.130 14.15 1.93 33.95 2.59
363 364 5.122519 TGCCGCTAATCAATGATTTAGACA 58.877 37.500 14.15 4.38 33.95 3.41
364 365 5.588246 TGCCGCTAATCAATGATTTAGACAA 59.412 36.000 14.15 0.00 33.95 3.18
365 366 6.138761 GCCGCTAATCAATGATTTAGACAAG 58.861 40.000 14.15 5.40 33.95 3.16
366 367 6.662616 CCGCTAATCAATGATTTAGACAAGG 58.337 40.000 14.15 5.17 33.95 3.61
367 368 6.293626 CCGCTAATCAATGATTTAGACAAGGG 60.294 42.308 14.15 11.49 33.95 3.95
368 369 6.483307 CGCTAATCAATGATTTAGACAAGGGA 59.517 38.462 14.15 0.00 33.95 4.20
369 370 7.519008 CGCTAATCAATGATTTAGACAAGGGAC 60.519 40.741 14.15 0.00 33.95 4.46
370 371 7.255277 GCTAATCAATGATTTAGACAAGGGACC 60.255 40.741 14.15 0.00 33.95 4.46
371 372 4.513442 TCAATGATTTAGACAAGGGACCG 58.487 43.478 0.00 0.00 0.00 4.79
372 373 4.224147 TCAATGATTTAGACAAGGGACCGA 59.776 41.667 0.00 0.00 0.00 4.69
373 374 4.837093 ATGATTTAGACAAGGGACCGAA 57.163 40.909 0.00 0.00 0.00 4.30
374 375 4.627284 TGATTTAGACAAGGGACCGAAA 57.373 40.909 0.00 0.00 0.00 3.46
375 376 5.174037 TGATTTAGACAAGGGACCGAAAT 57.826 39.130 0.00 0.00 0.00 2.17
376 377 6.302535 TGATTTAGACAAGGGACCGAAATA 57.697 37.500 0.00 0.00 0.00 1.40
377 378 6.713276 TGATTTAGACAAGGGACCGAAATAA 58.287 36.000 0.00 0.00 0.00 1.40
378 379 7.343357 TGATTTAGACAAGGGACCGAAATAAT 58.657 34.615 0.00 0.00 0.00 1.28
379 380 8.487848 TGATTTAGACAAGGGACCGAAATAATA 58.512 33.333 0.00 0.00 0.00 0.98
380 381 8.672823 ATTTAGACAAGGGACCGAAATAATAC 57.327 34.615 0.00 0.00 0.00 1.89
381 382 5.687166 AGACAAGGGACCGAAATAATACA 57.313 39.130 0.00 0.00 0.00 2.29
382 383 5.425630 AGACAAGGGACCGAAATAATACAC 58.574 41.667 0.00 0.00 0.00 2.90
383 384 4.520179 ACAAGGGACCGAAATAATACACC 58.480 43.478 0.00 0.00 0.00 4.16
384 385 4.226620 ACAAGGGACCGAAATAATACACCT 59.773 41.667 0.00 0.00 0.00 4.00
385 386 5.190677 CAAGGGACCGAAATAATACACCTT 58.809 41.667 0.00 0.00 36.31 3.50
386 387 6.070078 ACAAGGGACCGAAATAATACACCTTA 60.070 38.462 0.00 0.00 34.31 2.69
387 388 5.922053 AGGGACCGAAATAATACACCTTAC 58.078 41.667 0.00 0.00 0.00 2.34
388 389 5.426185 AGGGACCGAAATAATACACCTTACA 59.574 40.000 0.00 0.00 0.00 2.41
389 390 6.100714 AGGGACCGAAATAATACACCTTACAT 59.899 38.462 0.00 0.00 0.00 2.29
390 391 7.290714 AGGGACCGAAATAATACACCTTACATA 59.709 37.037 0.00 0.00 0.00 2.29
391 392 7.933033 GGGACCGAAATAATACACCTTACATAA 59.067 37.037 0.00 0.00 0.00 1.90
392 393 9.328845 GGACCGAAATAATACACCTTACATAAA 57.671 33.333 0.00 0.00 0.00 1.40
409 410 9.838339 CTTACATAAAGGAATGGATTGAGTACT 57.162 33.333 0.00 0.00 0.00 2.73
415 416 8.567285 AAAGGAATGGATTGAGTACTTTACAG 57.433 34.615 0.00 0.00 0.00 2.74
435 436 9.656040 TTTACAGCGACCATATTCTAAGTTTTA 57.344 29.630 0.00 0.00 0.00 1.52
469 804 9.983024 TTGATTTGATTTAAGTATTGGTAGGGA 57.017 29.630 0.00 0.00 0.00 4.20
474 809 7.935405 TGATTTAAGTATTGGTAGGGAAAGGT 58.065 34.615 0.00 0.00 0.00 3.50
475 810 7.832187 TGATTTAAGTATTGGTAGGGAAAGGTG 59.168 37.037 0.00 0.00 0.00 4.00
477 812 5.437191 AAGTATTGGTAGGGAAAGGTGAG 57.563 43.478 0.00 0.00 0.00 3.51
502 838 7.833183 AGGAAAGCTTTGATTAGTTGATGATCT 59.167 33.333 18.30 0.00 0.00 2.75
537 873 8.496534 TGAATTGATCTTGGTATGGATAGAGA 57.503 34.615 0.00 0.00 0.00 3.10
546 882 4.404394 TGGTATGGATAGAGAAACGCAAGA 59.596 41.667 0.00 0.00 43.62 3.02
556 892 9.319223 GATAGAGAAACGCAAGAAAAGTTTTAG 57.681 33.333 0.00 0.00 38.09 1.85
560 896 7.535997 AGAAACGCAAGAAAAGTTTTAGTTCT 58.464 30.769 0.00 1.02 38.09 3.01
564 900 7.088272 ACGCAAGAAAAGTTTTAGTTCTGTTT 58.912 30.769 0.00 0.00 43.62 2.83
565 901 7.597369 ACGCAAGAAAAGTTTTAGTTCTGTTTT 59.403 29.630 0.00 0.00 43.62 2.43
566 902 9.068008 CGCAAGAAAAGTTTTAGTTCTGTTTTA 57.932 29.630 0.00 0.00 43.02 1.52
604 945 8.750515 TTTGATTGAGTTAATGCAGGATATGA 57.249 30.769 0.00 0.00 0.00 2.15
610 951 5.813383 AGTTAATGCAGGATATGATGGAGG 58.187 41.667 0.00 0.00 0.00 4.30
612 953 3.996921 ATGCAGGATATGATGGAGGAC 57.003 47.619 0.00 0.00 0.00 3.85
614 955 4.132122 TGCAGGATATGATGGAGGACTA 57.868 45.455 0.00 0.00 0.00 2.59
615 956 4.092279 TGCAGGATATGATGGAGGACTAG 58.908 47.826 0.00 0.00 0.00 2.57
619 960 3.119316 GGATATGATGGAGGACTAGCGTG 60.119 52.174 0.00 0.00 0.00 5.34
620 961 1.781786 ATGATGGAGGACTAGCGTGT 58.218 50.000 0.00 0.00 0.00 4.49
622 963 2.298610 TGATGGAGGACTAGCGTGTAG 58.701 52.381 0.00 0.00 0.00 2.74
623 964 2.092592 TGATGGAGGACTAGCGTGTAGA 60.093 50.000 0.00 0.00 0.00 2.59
630 971 4.333690 AGGACTAGCGTGTAGAAGAAGAA 58.666 43.478 0.00 0.00 0.00 2.52
634 975 5.471257 ACTAGCGTGTAGAAGAAGAAAAGG 58.529 41.667 0.00 0.00 0.00 3.11
670 1015 0.662374 ACAGTTGAGGCGAACGTACG 60.662 55.000 15.01 15.01 0.00 3.67
686 1031 1.549170 GTACGACCACCAACTCTCCAT 59.451 52.381 0.00 0.00 0.00 3.41
692 1037 4.809426 CGACCACCAACTCTCCATATTAAC 59.191 45.833 0.00 0.00 0.00 2.01
782 1128 8.328146 TCATTTCTAAATTATTGAAGACGCTCG 58.672 33.333 0.00 0.00 0.00 5.03
850 1196 8.418597 AGAAGTCATTATAAAGTCGGGCTATA 57.581 34.615 0.00 0.00 0.00 1.31
861 1207 4.538738 AGTCGGGCTATAGTCTTTTCTCT 58.461 43.478 3.98 0.00 0.00 3.10
862 1208 5.692928 AGTCGGGCTATAGTCTTTTCTCTA 58.307 41.667 3.98 0.00 0.00 2.43
863 1209 6.127793 AGTCGGGCTATAGTCTTTTCTCTAA 58.872 40.000 3.98 0.00 0.00 2.10
899 1245 8.854614 AGATGCTATTATAAAGTTGGACCATC 57.145 34.615 0.00 0.00 0.00 3.51
900 1246 7.885399 AGATGCTATTATAAAGTTGGACCATCC 59.115 37.037 0.00 0.00 36.96 3.51
903 1249 5.742562 ATTATAAAGTTGGACCATCCCCA 57.257 39.130 0.00 0.00 35.03 4.96
910 1256 1.233080 GGACCATCCCCATTTCCCC 59.767 63.158 0.00 0.00 0.00 4.81
921 1267 2.225117 CCCATTTCCCCAGAGAAAGTGT 60.225 50.000 0.00 0.00 39.04 3.55
928 1274 2.887151 CCAGAGAAAGTGTGGGGAAT 57.113 50.000 0.00 0.00 35.84 3.01
930 1276 3.878778 CCAGAGAAAGTGTGGGGAATAG 58.121 50.000 0.00 0.00 35.84 1.73
931 1277 3.264450 CCAGAGAAAGTGTGGGGAATAGT 59.736 47.826 0.00 0.00 35.84 2.12
932 1278 4.263506 CCAGAGAAAGTGTGGGGAATAGTT 60.264 45.833 0.00 0.00 35.84 2.24
989 1338 3.261390 AGCAAGAAGAGCAGAGTGAGAAT 59.739 43.478 0.00 0.00 0.00 2.40
992 1341 4.654091 AGAAGAGCAGAGTGAGAATAGC 57.346 45.455 0.00 0.00 0.00 2.97
1077 1426 1.381076 CCTTACCCCAAAGCCCGAA 59.619 57.895 0.00 0.00 0.00 4.30
1143 1492 1.750399 CCCCAAGCTCGAACCCATG 60.750 63.158 0.00 0.00 0.00 3.66
1153 1502 0.810031 CGAACCCATGGCTCTTACCG 60.810 60.000 6.09 0.00 0.00 4.02
1224 1591 0.546122 ACCTCCACTTCACACAGCAA 59.454 50.000 0.00 0.00 0.00 3.91
1307 1674 0.114168 CCACAAGGTTCCATTCCCCA 59.886 55.000 0.00 0.00 0.00 4.96
1324 1700 0.528466 CCATGACACATCCGTCTCCG 60.528 60.000 0.00 0.00 36.82 4.63
1347 1723 0.942410 CTTCGTCGACCGGCAAGAAA 60.942 55.000 10.58 0.00 37.11 2.52
1352 1728 4.084888 GACCGGCAAGAAACGCGG 62.085 66.667 12.47 0.00 0.00 6.46
1391 1767 3.250323 CGAGATGGTGCGCGTCAG 61.250 66.667 8.43 0.00 0.00 3.51
1411 1787 2.338620 CCGTCACGCCTCAAGACA 59.661 61.111 0.00 0.00 32.68 3.41
1629 2005 2.968206 GACGCCTTCCACTACCGT 59.032 61.111 0.00 0.00 34.52 4.83
1995 2371 3.315949 ACCTACGAGCCGGGCAAA 61.316 61.111 23.09 2.01 0.00 3.68
2229 2605 0.108329 ACTTCGACTACATTGCCCGG 60.108 55.000 0.00 0.00 0.00 5.73
2364 2779 1.002134 CAATGAGGACGGCACCCTT 60.002 57.895 0.00 0.00 33.36 3.95
2426 2844 4.790962 CTGCCCCATGAGCTGCGT 62.791 66.667 0.00 0.00 0.00 5.24
2553 2971 1.313091 TGTGCGAGTACAGCGGAGAT 61.313 55.000 9.67 0.00 37.44 2.75
2610 3028 2.556459 CGAGGGCTCCGTCATCGAT 61.556 63.158 9.02 0.00 39.71 3.59
2673 3094 1.429927 CTGCTGCGCTTGGAGATGAG 61.430 60.000 9.73 0.00 31.73 2.90
2683 3104 3.370315 GCTTGGAGATGAGGATGACAAGT 60.370 47.826 0.00 0.00 36.96 3.16
2685 3106 5.627735 GCTTGGAGATGAGGATGACAAGTTA 60.628 44.000 0.00 0.00 36.96 2.24
2721 3142 0.546598 CCTATTTCCAAGAGCCGGGT 59.453 55.000 5.45 5.45 0.00 5.28
2733 3154 1.227556 GCCGGGTTATGTGCTCGAT 60.228 57.895 2.18 0.00 30.18 3.59
2793 3214 0.675633 GCTGCACTCCCAATGTGTTT 59.324 50.000 0.00 0.00 37.70 2.83
2829 3250 0.669318 GTGGCGGTGAGAACGAATCA 60.669 55.000 0.00 0.00 0.00 2.57
2944 3365 3.429141 GAGACGGTCCAGCGACGA 61.429 66.667 4.14 0.00 40.17 4.20
2947 3368 3.547249 GACGGTCCAGCGACGACAA 62.547 63.158 4.96 0.00 40.17 3.18
3006 3427 1.912043 CTTGGAGACCAGTGGAAGGAT 59.088 52.381 18.40 0.00 33.81 3.24
3133 6835 2.304761 CCCCCTAGCTAGTTGTTGACAA 59.695 50.000 19.31 0.00 0.00 3.18
3257 6980 0.593128 ATCTTTTGCCGTGTCACTGC 59.407 50.000 12.05 12.05 0.00 4.40
3330 7056 4.320494 CCACAAGTGAACCTATTTGCTGTC 60.320 45.833 0.94 0.00 0.00 3.51
3347 7073 5.688823 TGCTGTCGAATTGTTTGTAAGATG 58.311 37.500 0.00 0.00 0.00 2.90
3361 7087 7.549134 TGTTTGTAAGATGCTAAGATGACGATT 59.451 33.333 0.00 0.00 0.00 3.34
3389 7115 4.675510 CATGCATGGGAGTGTATGTTTTC 58.324 43.478 19.40 0.00 37.41 2.29
3431 7161 1.765314 GATGTACTGACCAGGAGCCAT 59.235 52.381 0.00 0.00 0.00 4.40
3479 7222 1.414181 ACTGTGTGTGAAGGTCCTCTG 59.586 52.381 0.00 0.00 0.00 3.35
3641 7385 1.403679 TGCTGTTTGCGTTTGTAGCTT 59.596 42.857 0.00 0.00 46.63 3.74
3644 7388 1.066303 TGTTTGCGTTTGTAGCTTGGG 59.934 47.619 0.00 0.00 35.28 4.12
3682 7426 4.700213 TGCTGTTAGTTGATCTTTTAGCCC 59.300 41.667 0.00 0.00 0.00 5.19
3701 7445 2.686915 CCCAGTGATGATCTTTTGCCTC 59.313 50.000 0.00 0.00 0.00 4.70
3821 7579 4.405116 AGATGATGGTCAAGAAGAGCTC 57.595 45.455 5.27 5.27 44.98 4.09
3890 7652 2.094854 GGGCTGACTGCAATCTCAAAAG 60.095 50.000 6.65 0.00 45.15 2.27
3912 7674 2.193786 GGTTGGTTGGGGACGTGT 59.806 61.111 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.305928 GTATGCCCCATTGTATGCACA 58.694 47.619 0.00 0.00 36.41 4.57
62 63 9.805204 ATAATGGAATGGAGGGAGTATATAACT 57.195 33.333 0.00 0.00 42.80 2.24
68 69 9.230477 CCTAATATAATGGAATGGAGGGAGTAT 57.770 37.037 0.00 0.00 0.00 2.12
69 70 8.191110 ACCTAATATAATGGAATGGAGGGAGTA 58.809 37.037 0.00 0.00 0.00 2.59
70 71 7.031917 ACCTAATATAATGGAATGGAGGGAGT 58.968 38.462 0.00 0.00 0.00 3.85
71 72 7.037297 ACACCTAATATAATGGAATGGAGGGAG 60.037 40.741 0.00 0.00 0.00 4.30
72 73 6.797540 ACACCTAATATAATGGAATGGAGGGA 59.202 38.462 0.00 0.00 0.00 4.20
73 74 7.032598 ACACCTAATATAATGGAATGGAGGG 57.967 40.000 0.00 0.00 0.00 4.30
107 108 9.311916 GCACCTTACATTATGCAATTTTATCAA 57.688 29.630 0.00 0.00 38.00 2.57
108 109 8.473219 TGCACCTTACATTATGCAATTTTATCA 58.527 29.630 0.00 0.00 44.72 2.15
109 110 8.870160 TGCACCTTACATTATGCAATTTTATC 57.130 30.769 0.00 0.00 44.72 1.75
118 119 6.332630 AGAACAAATGCACCTTACATTATGC 58.667 36.000 0.00 0.00 36.74 3.14
122 123 8.806146 AGAATTAGAACAAATGCACCTTACATT 58.194 29.630 0.00 0.00 39.38 2.71
123 124 8.353423 AGAATTAGAACAAATGCACCTTACAT 57.647 30.769 0.00 0.00 0.00 2.29
124 125 7.759489 AGAATTAGAACAAATGCACCTTACA 57.241 32.000 0.00 0.00 0.00 2.41
174 175 7.006509 TCAAGTGAGAGATCCTTTCCATTTTT 58.993 34.615 0.00 0.00 0.00 1.94
175 176 6.546484 TCAAGTGAGAGATCCTTTCCATTTT 58.454 36.000 0.00 0.00 0.00 1.82
176 177 6.131972 TCAAGTGAGAGATCCTTTCCATTT 57.868 37.500 0.00 0.00 0.00 2.32
177 178 5.768980 TCAAGTGAGAGATCCTTTCCATT 57.231 39.130 0.00 0.00 0.00 3.16
178 179 5.972327 ATCAAGTGAGAGATCCTTTCCAT 57.028 39.130 0.00 0.00 0.00 3.41
179 180 5.494724 CAATCAAGTGAGAGATCCTTTCCA 58.505 41.667 0.00 0.00 0.00 3.53
180 181 4.335037 GCAATCAAGTGAGAGATCCTTTCC 59.665 45.833 0.00 0.00 0.00 3.13
181 182 5.184711 AGCAATCAAGTGAGAGATCCTTTC 58.815 41.667 0.00 0.00 0.00 2.62
182 183 5.176741 AGCAATCAAGTGAGAGATCCTTT 57.823 39.130 0.00 0.00 0.00 3.11
183 184 4.840716 AGCAATCAAGTGAGAGATCCTT 57.159 40.909 0.00 0.00 0.00 3.36
184 185 4.019501 ACAAGCAATCAAGTGAGAGATCCT 60.020 41.667 0.00 0.00 0.00 3.24
185 186 4.260170 ACAAGCAATCAAGTGAGAGATCC 58.740 43.478 0.00 0.00 0.00 3.36
186 187 6.985645 AGATACAAGCAATCAAGTGAGAGATC 59.014 38.462 0.00 0.00 0.00 2.75
187 188 6.887013 AGATACAAGCAATCAAGTGAGAGAT 58.113 36.000 0.00 0.00 0.00 2.75
188 189 6.154192 AGAGATACAAGCAATCAAGTGAGAGA 59.846 38.462 0.00 0.00 0.00 3.10
189 190 6.339730 AGAGATACAAGCAATCAAGTGAGAG 58.660 40.000 0.00 0.00 0.00 3.20
190 191 6.291648 AGAGATACAAGCAATCAAGTGAGA 57.708 37.500 0.00 0.00 0.00 3.27
191 192 5.523188 GGAGAGATACAAGCAATCAAGTGAG 59.477 44.000 0.00 0.00 0.00 3.51
192 193 5.188555 AGGAGAGATACAAGCAATCAAGTGA 59.811 40.000 0.00 0.00 0.00 3.41
193 194 5.426504 AGGAGAGATACAAGCAATCAAGTG 58.573 41.667 0.00 0.00 0.00 3.16
194 195 5.690464 AGGAGAGATACAAGCAATCAAGT 57.310 39.130 0.00 0.00 0.00 3.16
195 196 9.421806 CTATAAGGAGAGATACAAGCAATCAAG 57.578 37.037 0.00 0.00 0.00 3.02
196 197 9.147732 TCTATAAGGAGAGATACAAGCAATCAA 57.852 33.333 0.00 0.00 0.00 2.57
197 198 8.712228 TCTATAAGGAGAGATACAAGCAATCA 57.288 34.615 0.00 0.00 0.00 2.57
198 199 9.019656 TCTCTATAAGGAGAGATACAAGCAATC 57.980 37.037 0.00 0.00 45.64 2.67
199 200 8.948401 TCTCTATAAGGAGAGATACAAGCAAT 57.052 34.615 0.00 0.00 45.64 3.56
225 226 8.980481 TCAGGTGAGAGATAGTTTTTCTTTTT 57.020 30.769 0.00 0.00 0.00 1.94
226 227 9.579932 AATCAGGTGAGAGATAGTTTTTCTTTT 57.420 29.630 0.00 0.00 0.00 2.27
227 228 9.007901 CAATCAGGTGAGAGATAGTTTTTCTTT 57.992 33.333 0.00 0.00 0.00 2.52
228 229 8.160106 ACAATCAGGTGAGAGATAGTTTTTCTT 58.840 33.333 0.00 0.00 0.00 2.52
229 230 7.684529 ACAATCAGGTGAGAGATAGTTTTTCT 58.315 34.615 0.00 0.00 0.00 2.52
230 231 7.913674 ACAATCAGGTGAGAGATAGTTTTTC 57.086 36.000 0.00 0.00 0.00 2.29
231 232 8.571336 CAAACAATCAGGTGAGAGATAGTTTTT 58.429 33.333 0.00 0.00 0.00 1.94
232 233 7.721399 ACAAACAATCAGGTGAGAGATAGTTTT 59.279 33.333 0.00 0.00 0.00 2.43
233 234 7.227156 ACAAACAATCAGGTGAGAGATAGTTT 58.773 34.615 0.00 0.00 0.00 2.66
234 235 6.773638 ACAAACAATCAGGTGAGAGATAGTT 58.226 36.000 0.00 0.00 0.00 2.24
235 236 6.365970 ACAAACAATCAGGTGAGAGATAGT 57.634 37.500 0.00 0.00 0.00 2.12
236 237 8.420222 AGATACAAACAATCAGGTGAGAGATAG 58.580 37.037 0.00 0.00 0.00 2.08
237 238 8.311395 AGATACAAACAATCAGGTGAGAGATA 57.689 34.615 0.00 0.00 0.00 1.98
238 239 7.125507 AGAGATACAAACAATCAGGTGAGAGAT 59.874 37.037 0.00 0.00 0.00 2.75
239 240 6.438741 AGAGATACAAACAATCAGGTGAGAGA 59.561 38.462 0.00 0.00 0.00 3.10
240 241 6.638610 AGAGATACAAACAATCAGGTGAGAG 58.361 40.000 0.00 0.00 0.00 3.20
241 242 6.611613 AGAGATACAAACAATCAGGTGAGA 57.388 37.500 0.00 0.00 0.00 3.27
242 243 7.102346 AGAAGAGATACAAACAATCAGGTGAG 58.898 38.462 0.00 0.00 0.00 3.51
243 244 7.009179 AGAAGAGATACAAACAATCAGGTGA 57.991 36.000 0.00 0.00 0.00 4.02
244 245 7.173907 ACAAGAAGAGATACAAACAATCAGGTG 59.826 37.037 0.00 0.00 0.00 4.00
245 246 7.227156 ACAAGAAGAGATACAAACAATCAGGT 58.773 34.615 0.00 0.00 0.00 4.00
246 247 7.678947 ACAAGAAGAGATACAAACAATCAGG 57.321 36.000 0.00 0.00 0.00 3.86
247 248 9.645059 TCTACAAGAAGAGATACAAACAATCAG 57.355 33.333 0.00 0.00 0.00 2.90
248 249 9.645059 CTCTACAAGAAGAGATACAAACAATCA 57.355 33.333 0.00 0.00 44.93 2.57
249 250 9.862371 TCTCTACAAGAAGAGATACAAACAATC 57.138 33.333 0.00 0.00 45.54 2.67
262 263 9.892130 AGTTTTCTCTTTTTCTCTACAAGAAGA 57.108 29.630 0.00 0.00 44.69 2.87
280 281 9.033481 CACAATCATGAGAGAGATAGTTTTCTC 57.967 37.037 0.09 0.00 42.08 2.87
281 282 8.538701 ACACAATCATGAGAGAGATAGTTTTCT 58.461 33.333 0.09 0.00 0.00 2.52
282 283 8.715191 ACACAATCATGAGAGAGATAGTTTTC 57.285 34.615 0.09 0.00 0.00 2.29
283 284 9.512588 AAACACAATCATGAGAGAGATAGTTTT 57.487 29.630 0.09 0.00 0.00 2.43
284 285 9.160496 GAAACACAATCATGAGAGAGATAGTTT 57.840 33.333 0.09 4.40 32.04 2.66
285 286 7.768120 GGAAACACAATCATGAGAGAGATAGTT 59.232 37.037 0.09 0.00 0.00 2.24
286 287 7.271511 GGAAACACAATCATGAGAGAGATAGT 58.728 38.462 0.09 0.00 0.00 2.12
287 288 6.705381 GGGAAACACAATCATGAGAGAGATAG 59.295 42.308 0.09 0.00 0.00 2.08
288 289 6.385176 AGGGAAACACAATCATGAGAGAGATA 59.615 38.462 0.09 0.00 0.00 1.98
289 290 5.191323 AGGGAAACACAATCATGAGAGAGAT 59.809 40.000 0.09 0.00 0.00 2.75
290 291 4.533707 AGGGAAACACAATCATGAGAGAGA 59.466 41.667 0.09 0.00 0.00 3.10
291 292 4.841422 AGGGAAACACAATCATGAGAGAG 58.159 43.478 0.09 0.00 0.00 3.20
292 293 4.916041 AGGGAAACACAATCATGAGAGA 57.084 40.909 0.09 0.00 0.00 3.10
293 294 5.972107 AAAGGGAAACACAATCATGAGAG 57.028 39.130 0.09 0.00 0.00 3.20
294 295 6.729690 AAAAAGGGAAACACAATCATGAGA 57.270 33.333 0.09 0.00 0.00 3.27
316 317 9.801873 GCAAATAAATCACTTATGCTAGGAAAA 57.198 29.630 0.00 0.00 30.24 2.29
317 318 8.413229 GGCAAATAAATCACTTATGCTAGGAAA 58.587 33.333 0.00 0.00 30.24 3.13
318 319 7.255104 CGGCAAATAAATCACTTATGCTAGGAA 60.255 37.037 0.00 0.00 30.24 3.36
319 320 6.204688 CGGCAAATAAATCACTTATGCTAGGA 59.795 38.462 0.00 0.00 30.24 2.94
320 321 6.373779 CGGCAAATAAATCACTTATGCTAGG 58.626 40.000 0.00 0.00 30.24 3.02
321 322 5.853282 GCGGCAAATAAATCACTTATGCTAG 59.147 40.000 0.00 0.00 30.24 3.42
322 323 5.530915 AGCGGCAAATAAATCACTTATGCTA 59.469 36.000 1.45 0.00 30.24 3.49
323 324 4.339247 AGCGGCAAATAAATCACTTATGCT 59.661 37.500 1.45 0.00 30.24 3.79
324 325 4.610945 AGCGGCAAATAAATCACTTATGC 58.389 39.130 1.45 0.00 30.24 3.14
325 326 8.075574 TGATTAGCGGCAAATAAATCACTTATG 58.924 33.333 1.45 0.00 32.99 1.90
326 327 8.165239 TGATTAGCGGCAAATAAATCACTTAT 57.835 30.769 1.45 0.00 32.99 1.73
327 328 7.561021 TGATTAGCGGCAAATAAATCACTTA 57.439 32.000 1.45 0.00 32.99 2.24
328 329 6.449635 TGATTAGCGGCAAATAAATCACTT 57.550 33.333 1.45 0.00 32.99 3.16
329 330 6.449635 TTGATTAGCGGCAAATAAATCACT 57.550 33.333 1.45 0.00 36.56 3.41
330 331 6.917477 TCATTGATTAGCGGCAAATAAATCAC 59.083 34.615 1.45 0.00 36.56 3.06
331 332 7.036996 TCATTGATTAGCGGCAAATAAATCA 57.963 32.000 1.45 6.68 35.39 2.57
332 333 8.524870 AATCATTGATTAGCGGCAAATAAATC 57.475 30.769 10.16 4.22 29.72 2.17
333 334 8.891671 AAATCATTGATTAGCGGCAAATAAAT 57.108 26.923 12.15 0.00 31.46 1.40
334 335 9.462174 CTAAATCATTGATTAGCGGCAAATAAA 57.538 29.630 12.15 0.00 31.46 1.40
335 336 8.845227 TCTAAATCATTGATTAGCGGCAAATAA 58.155 29.630 12.15 0.00 31.46 1.40
336 337 8.289618 GTCTAAATCATTGATTAGCGGCAAATA 58.710 33.333 12.15 0.00 31.46 1.40
337 338 7.141363 GTCTAAATCATTGATTAGCGGCAAAT 58.859 34.615 12.15 0.00 31.46 2.32
338 339 6.094742 TGTCTAAATCATTGATTAGCGGCAAA 59.905 34.615 12.15 0.00 31.46 3.68
339 340 5.588246 TGTCTAAATCATTGATTAGCGGCAA 59.412 36.000 12.15 0.00 31.46 4.52
340 341 5.122519 TGTCTAAATCATTGATTAGCGGCA 58.877 37.500 12.15 8.53 31.46 5.69
341 342 5.673337 TGTCTAAATCATTGATTAGCGGC 57.327 39.130 12.15 6.30 31.46 6.53
342 343 6.293626 CCCTTGTCTAAATCATTGATTAGCGG 60.294 42.308 12.15 6.57 31.46 5.52
343 344 6.483307 TCCCTTGTCTAAATCATTGATTAGCG 59.517 38.462 12.15 4.65 31.46 4.26
344 345 7.255277 GGTCCCTTGTCTAAATCATTGATTAGC 60.255 40.741 12.15 4.45 31.46 3.09
345 346 7.041780 CGGTCCCTTGTCTAAATCATTGATTAG 60.042 40.741 12.15 9.88 31.46 1.73
346 347 6.765989 CGGTCCCTTGTCTAAATCATTGATTA 59.234 38.462 12.15 0.00 31.46 1.75
347 348 5.590259 CGGTCCCTTGTCTAAATCATTGATT 59.410 40.000 6.06 6.06 33.25 2.57
348 349 5.104527 TCGGTCCCTTGTCTAAATCATTGAT 60.105 40.000 0.00 0.00 0.00 2.57
349 350 4.224147 TCGGTCCCTTGTCTAAATCATTGA 59.776 41.667 0.00 0.00 0.00 2.57
350 351 4.513442 TCGGTCCCTTGTCTAAATCATTG 58.487 43.478 0.00 0.00 0.00 2.82
351 352 4.837093 TCGGTCCCTTGTCTAAATCATT 57.163 40.909 0.00 0.00 0.00 2.57
352 353 4.837093 TTCGGTCCCTTGTCTAAATCAT 57.163 40.909 0.00 0.00 0.00 2.45
353 354 4.627284 TTTCGGTCCCTTGTCTAAATCA 57.373 40.909 0.00 0.00 0.00 2.57
354 355 7.803279 ATTATTTCGGTCCCTTGTCTAAATC 57.197 36.000 0.00 0.00 0.00 2.17
355 356 8.269317 TGTATTATTTCGGTCCCTTGTCTAAAT 58.731 33.333 0.00 0.00 0.00 1.40
356 357 7.550196 GTGTATTATTTCGGTCCCTTGTCTAAA 59.450 37.037 0.00 0.00 0.00 1.85
357 358 7.043565 GTGTATTATTTCGGTCCCTTGTCTAA 58.956 38.462 0.00 0.00 0.00 2.10
358 359 6.407299 GGTGTATTATTTCGGTCCCTTGTCTA 60.407 42.308 0.00 0.00 0.00 2.59
359 360 5.425630 GTGTATTATTTCGGTCCCTTGTCT 58.574 41.667 0.00 0.00 0.00 3.41
360 361 4.573607 GGTGTATTATTTCGGTCCCTTGTC 59.426 45.833 0.00 0.00 0.00 3.18
361 362 4.226620 AGGTGTATTATTTCGGTCCCTTGT 59.773 41.667 0.00 0.00 0.00 3.16
362 363 4.777463 AGGTGTATTATTTCGGTCCCTTG 58.223 43.478 0.00 0.00 0.00 3.61
363 364 5.446260 AAGGTGTATTATTTCGGTCCCTT 57.554 39.130 0.00 0.00 0.00 3.95
364 365 5.426185 TGTAAGGTGTATTATTTCGGTCCCT 59.574 40.000 0.00 0.00 0.00 4.20
365 366 5.673514 TGTAAGGTGTATTATTTCGGTCCC 58.326 41.667 0.00 0.00 0.00 4.46
366 367 8.891671 TTATGTAAGGTGTATTATTTCGGTCC 57.108 34.615 0.00 0.00 0.00 4.46
383 384 9.838339 AGTACTCAATCCATTCCTTTATGTAAG 57.162 33.333 0.00 0.00 0.00 2.34
389 390 9.667107 CTGTAAAGTACTCAATCCATTCCTTTA 57.333 33.333 0.00 0.00 0.00 1.85
390 391 7.121315 GCTGTAAAGTACTCAATCCATTCCTTT 59.879 37.037 0.00 0.00 0.00 3.11
391 392 6.599638 GCTGTAAAGTACTCAATCCATTCCTT 59.400 38.462 0.00 0.00 0.00 3.36
392 393 6.116126 GCTGTAAAGTACTCAATCCATTCCT 58.884 40.000 0.00 0.00 0.00 3.36
393 394 5.006746 CGCTGTAAAGTACTCAATCCATTCC 59.993 44.000 0.00 0.00 0.00 3.01
394 395 5.810587 TCGCTGTAAAGTACTCAATCCATTC 59.189 40.000 0.00 0.00 0.00 2.67
395 396 5.581085 GTCGCTGTAAAGTACTCAATCCATT 59.419 40.000 0.00 0.00 0.00 3.16
396 397 5.109903 GTCGCTGTAAAGTACTCAATCCAT 58.890 41.667 0.00 0.00 0.00 3.41
397 398 4.491676 GTCGCTGTAAAGTACTCAATCCA 58.508 43.478 0.00 0.00 0.00 3.41
398 399 3.864003 GGTCGCTGTAAAGTACTCAATCC 59.136 47.826 0.00 0.00 0.00 3.01
399 400 4.491676 TGGTCGCTGTAAAGTACTCAATC 58.508 43.478 0.00 0.00 0.00 2.67
400 401 4.530710 TGGTCGCTGTAAAGTACTCAAT 57.469 40.909 0.00 0.00 0.00 2.57
401 402 4.530710 ATGGTCGCTGTAAAGTACTCAA 57.469 40.909 0.00 0.00 0.00 3.02
402 403 5.847111 ATATGGTCGCTGTAAAGTACTCA 57.153 39.130 0.00 0.00 0.00 3.41
403 404 6.505272 AGAATATGGTCGCTGTAAAGTACTC 58.495 40.000 0.00 0.00 0.00 2.59
404 405 6.466885 AGAATATGGTCGCTGTAAAGTACT 57.533 37.500 0.00 0.00 0.00 2.73
405 406 7.919621 ACTTAGAATATGGTCGCTGTAAAGTAC 59.080 37.037 0.00 0.00 0.00 2.73
409 410 8.556213 AAAACTTAGAATATGGTCGCTGTAAA 57.444 30.769 0.00 0.00 0.00 2.01
469 804 6.071320 ACTAATCAAAGCTTTCCTCACCTTT 58.929 36.000 9.23 0.00 0.00 3.11
474 809 6.942005 TCATCAACTAATCAAAGCTTTCCTCA 59.058 34.615 9.23 0.00 0.00 3.86
475 810 7.383102 TCATCAACTAATCAAAGCTTTCCTC 57.617 36.000 9.23 0.00 0.00 3.71
477 812 7.914346 CAGATCATCAACTAATCAAAGCTTTCC 59.086 37.037 9.23 0.00 0.00 3.13
521 857 4.693283 TGCGTTTCTCTATCCATACCAAG 58.307 43.478 0.00 0.00 0.00 3.61
535 871 7.484959 CAGAACTAAAACTTTTCTTGCGTTTCT 59.515 33.333 0.00 0.00 31.12 2.52
537 873 7.088272 ACAGAACTAAAACTTTTCTTGCGTTT 58.912 30.769 0.00 0.00 32.69 3.60
577 918 9.976511 CATATCCTGCATTAACTCAATCAAATT 57.023 29.630 0.00 0.00 0.00 1.82
604 945 2.730934 TCTACACGCTAGTCCTCCAT 57.269 50.000 0.00 0.00 0.00 3.41
610 951 5.573669 CCTTTTCTTCTTCTACACGCTAGTC 59.426 44.000 0.00 0.00 0.00 2.59
612 953 4.327627 GCCTTTTCTTCTTCTACACGCTAG 59.672 45.833 0.00 0.00 0.00 3.42
614 955 3.067833 GCCTTTTCTTCTTCTACACGCT 58.932 45.455 0.00 0.00 0.00 5.07
615 956 2.806244 TGCCTTTTCTTCTTCTACACGC 59.194 45.455 0.00 0.00 0.00 5.34
619 960 5.668558 TCGTTTGCCTTTTCTTCTTCTAC 57.331 39.130 0.00 0.00 0.00 2.59
620 961 5.238650 CCTTCGTTTGCCTTTTCTTCTTCTA 59.761 40.000 0.00 0.00 0.00 2.10
622 963 4.036380 TCCTTCGTTTGCCTTTTCTTCTTC 59.964 41.667 0.00 0.00 0.00 2.87
623 964 3.951680 TCCTTCGTTTGCCTTTTCTTCTT 59.048 39.130 0.00 0.00 0.00 2.52
630 971 0.476771 TCCCTCCTTCGTTTGCCTTT 59.523 50.000 0.00 0.00 0.00 3.11
634 975 2.280628 CTGTATCCCTCCTTCGTTTGC 58.719 52.381 0.00 0.00 0.00 3.68
670 1015 4.809426 CGTTAATATGGAGAGTTGGTGGTC 59.191 45.833 0.00 0.00 0.00 4.02
757 1102 8.328146 TCGAGCGTCTTCAATAATTTAGAAATG 58.672 33.333 0.00 0.00 0.00 2.32
758 1103 8.420374 TCGAGCGTCTTCAATAATTTAGAAAT 57.580 30.769 0.00 0.00 0.00 2.17
818 1164 8.175716 CCGACTTTATAATGACTTCTTGGAAAC 58.824 37.037 5.43 0.00 0.00 2.78
820 1166 6.821665 CCCGACTTTATAATGACTTCTTGGAA 59.178 38.462 5.43 0.00 0.00 3.53
821 1167 6.346096 CCCGACTTTATAATGACTTCTTGGA 58.654 40.000 5.43 0.00 0.00 3.53
822 1168 5.007724 GCCCGACTTTATAATGACTTCTTGG 59.992 44.000 5.43 0.00 0.00 3.61
823 1169 5.817816 AGCCCGACTTTATAATGACTTCTTG 59.182 40.000 5.43 0.00 0.00 3.02
824 1170 5.990668 AGCCCGACTTTATAATGACTTCTT 58.009 37.500 5.43 0.00 0.00 2.52
831 1177 9.490379 AAAAGACTATAGCCCGACTTTATAATG 57.510 33.333 0.00 0.00 0.00 1.90
878 1224 5.710567 GGGGATGGTCCAACTTTATAATAGC 59.289 44.000 0.00 0.00 38.64 2.97
899 1245 1.359130 ACTTTCTCTGGGGAAATGGGG 59.641 52.381 0.00 0.00 35.12 4.96
900 1246 2.225117 ACACTTTCTCTGGGGAAATGGG 60.225 50.000 0.00 0.00 35.12 4.00
903 1249 2.225117 CCCACACTTTCTCTGGGGAAAT 60.225 50.000 0.00 0.00 41.08 2.17
910 1256 4.559862 ACTATTCCCCACACTTTCTCTG 57.440 45.455 0.00 0.00 0.00 3.35
921 1267 4.017037 AGTCTCTCTCTCAACTATTCCCCA 60.017 45.833 0.00 0.00 0.00 4.96
924 1270 6.038271 GTCTGAGTCTCTCTCTCAACTATTCC 59.962 46.154 0.65 0.00 43.13 3.01
925 1271 6.597672 TGTCTGAGTCTCTCTCTCAACTATTC 59.402 42.308 0.65 0.00 43.13 1.75
926 1272 6.480763 TGTCTGAGTCTCTCTCTCAACTATT 58.519 40.000 0.65 0.00 43.13 1.73
928 1274 5.491323 TGTCTGAGTCTCTCTCTCAACTA 57.509 43.478 0.65 0.00 43.13 2.24
929 1275 4.365514 TGTCTGAGTCTCTCTCTCAACT 57.634 45.455 0.65 0.00 43.13 3.16
930 1276 5.401550 CAATGTCTGAGTCTCTCTCTCAAC 58.598 45.833 0.65 0.00 43.13 3.18
931 1277 4.462132 CCAATGTCTGAGTCTCTCTCTCAA 59.538 45.833 0.65 0.00 43.13 3.02
932 1278 4.015764 CCAATGTCTGAGTCTCTCTCTCA 58.984 47.826 0.65 0.00 43.13 3.27
948 1294 2.581208 TACGCCGAATCGCCCAATGT 62.581 55.000 0.00 0.00 0.00 2.71
953 1299 4.884257 TGCTACGCCGAATCGCCC 62.884 66.667 0.00 0.00 0.00 6.13
972 1318 3.131933 TGGCTATTCTCACTCTGCTCTTC 59.868 47.826 0.00 0.00 0.00 2.87
973 1319 3.102972 TGGCTATTCTCACTCTGCTCTT 58.897 45.455 0.00 0.00 0.00 2.85
978 1327 2.429971 TGCTCTGGCTATTCTCACTCTG 59.570 50.000 0.00 0.00 39.59 3.35
980 1329 3.533606 TTGCTCTGGCTATTCTCACTC 57.466 47.619 0.00 0.00 39.59 3.51
992 1341 1.817099 GAGGACGCCATTGCTCTGG 60.817 63.158 1.17 1.17 39.45 3.86
1124 1473 2.231380 ATGGGTTCGAGCTTGGGGT 61.231 57.895 0.00 0.00 0.00 4.95
1224 1591 3.823330 GGGACGGCGTCGATCTGT 61.823 66.667 31.02 0.00 40.11 3.41
1260 1627 1.002624 GGGTTGCGGATTGGAGACA 60.003 57.895 0.00 0.00 39.83 3.41
1407 1783 0.687354 AGCGGAAGTGGATGTTGTCT 59.313 50.000 0.00 0.00 0.00 3.41
1411 1787 1.201429 AGGGAGCGGAAGTGGATGTT 61.201 55.000 0.00 0.00 0.00 2.71
1716 2092 3.932580 GACGATGCTGGTGGCGACA 62.933 63.158 0.00 0.00 45.43 4.35
1857 2233 2.744768 GCAGCTGTAGTGAAGCGCC 61.745 63.158 16.64 0.00 45.59 6.53
1863 2239 0.526211 CGTAGTGGCAGCTGTAGTGA 59.474 55.000 16.64 0.00 0.00 3.41
1920 2296 4.344865 TTTCGGCTGGGGCTGGAC 62.345 66.667 0.00 0.00 44.44 4.02
1935 2311 2.036556 CGTCGTACACGTACACCTTT 57.963 50.000 8.02 0.00 44.07 3.11
1995 2371 4.552365 CAGACATGGCGGCCGGAT 62.552 66.667 29.38 0.00 0.00 4.18
2229 2605 0.807275 GCGGCAATGGAAATTCAGGC 60.807 55.000 0.00 0.00 0.00 4.85
2335 2750 0.907704 TCCTCATTGTACACCGGGCT 60.908 55.000 6.32 0.00 0.00 5.19
2364 2779 4.974438 ACCGGCCTTCCCCTGACA 62.974 66.667 0.00 0.00 0.00 3.58
2579 2997 2.511600 CCTCGTCCATGGCGAACC 60.512 66.667 24.60 4.49 37.93 3.62
2661 3079 2.996249 TGTCATCCTCATCTCCAAGC 57.004 50.000 0.00 0.00 0.00 4.01
2673 3094 0.746923 GGCGGGGTAACTTGTCATCC 60.747 60.000 0.00 0.00 0.00 3.51
2683 3104 3.332385 GAACTGGGGGCGGGGTAA 61.332 66.667 0.00 0.00 0.00 2.85
2704 3125 3.201266 ACATAACCCGGCTCTTGGAAATA 59.799 43.478 0.00 0.00 0.00 1.40
2721 3142 1.470805 CGGGACACATCGAGCACATAA 60.471 52.381 0.00 0.00 0.00 1.90
2733 3154 2.525629 TTCCTCCTGCGGGACACA 60.526 61.111 11.27 0.00 36.57 3.72
2772 3193 0.692476 ACACATTGGGAGTGCAGCTA 59.308 50.000 0.00 0.00 40.59 3.32
2793 3214 0.524414 CACGGACGACATACTGGACA 59.476 55.000 0.00 0.00 0.00 4.02
2817 3238 1.554617 TGAGGGCATGATTCGTTCTCA 59.445 47.619 0.00 0.00 0.00 3.27
2820 3241 1.017387 GGTGAGGGCATGATTCGTTC 58.983 55.000 0.00 0.00 0.00 3.95
2871 3292 1.227350 AATGCTCAGCTCGCGCATA 60.227 52.632 8.75 0.00 43.02 3.14
2883 3304 0.940126 CCATGCCGTAGTCAATGCTC 59.060 55.000 0.00 0.00 0.00 4.26
2889 3310 2.036346 CTGATCATCCATGCCGTAGTCA 59.964 50.000 0.00 0.00 0.00 3.41
2924 3345 1.215647 GTCGCTGGACCGTCTCATT 59.784 57.895 0.00 0.00 37.19 2.57
2944 3365 1.887198 AGTCCATCGAGTCGAACTTGT 59.113 47.619 20.74 0.00 39.99 3.16
2947 3368 1.822506 TCAGTCCATCGAGTCGAACT 58.177 50.000 20.74 15.58 39.99 3.01
3257 6980 7.845622 GCTTTTGCGCATTGTAAATAATAAAGG 59.154 33.333 12.75 0.00 31.98 3.11
3330 7056 8.390354 TCATCTTAGCATCTTACAAACAATTCG 58.610 33.333 0.00 0.00 0.00 3.34
3347 7073 5.389307 GCATGCTCTTAATCGTCATCTTAGC 60.389 44.000 11.37 0.00 0.00 3.09
3361 7087 1.561076 ACACTCCCATGCATGCTCTTA 59.439 47.619 21.69 0.00 0.00 2.10
3389 7115 1.424493 GCCCGACGATCAAGCTTGAG 61.424 60.000 31.14 21.75 41.08 3.02
3431 7161 8.246430 TCTTCTTCTTCAACTTAACTACAGGA 57.754 34.615 0.00 0.00 0.00 3.86
3444 7187 7.272244 TCACACACAGTATTCTTCTTCTTCAA 58.728 34.615 0.00 0.00 0.00 2.69
3479 7222 1.047034 ACAGATACTACACCCGGCCC 61.047 60.000 0.00 0.00 0.00 5.80
3619 7363 1.268539 GCTACAAACGCAAACAGCACT 60.269 47.619 0.00 0.00 46.13 4.40
3630 7374 3.608474 GCAAGTAACCCAAGCTACAAACG 60.608 47.826 0.00 0.00 0.00 3.60
3634 7378 2.370519 TCTGCAAGTAACCCAAGCTACA 59.629 45.455 0.00 0.00 33.76 2.74
3641 7385 1.953686 GCACTTTCTGCAAGTAACCCA 59.046 47.619 0.00 0.00 44.60 4.51
3682 7426 3.005554 ACGAGGCAAAAGATCATCACTG 58.994 45.455 0.00 0.00 0.00 3.66
3701 7445 3.354089 AAATGACAAAAGCCACAGACG 57.646 42.857 0.00 0.00 0.00 4.18
3759 7510 0.031178 CAGGTTGGTTCACTTGCAGC 59.969 55.000 0.00 0.00 0.00 5.25
3760 7511 1.392589 ACAGGTTGGTTCACTTGCAG 58.607 50.000 0.00 0.00 0.00 4.41
3761 7512 1.846007 AACAGGTTGGTTCACTTGCA 58.154 45.000 0.00 0.00 0.00 4.08
3762 7513 2.539476 CAAACAGGTTGGTTCACTTGC 58.461 47.619 0.00 0.00 33.18 4.01
3821 7579 3.596214 ACATGGAACGGCTAGTAACTTG 58.404 45.455 0.00 0.00 0.00 3.16
3890 7652 3.513566 TCCCCAACCAACCACCCC 61.514 66.667 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.