Multiple sequence alignment - TraesCS1B01G055400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G055400 chr1B 100.000 5564 0 0 1 5564 38116739 38122302 0.000000e+00 10275.0
1 TraesCS1B01G055400 chr1B 96.379 2016 54 8 2681 4681 37570652 37568641 0.000000e+00 3301.0
2 TraesCS1B01G055400 chr1B 91.138 1986 88 35 792 2708 37572564 37570598 0.000000e+00 2612.0
3 TraesCS1B01G055400 chr1B 94.837 1627 62 10 2681 4291 37319871 37321491 0.000000e+00 2519.0
4 TraesCS1B01G055400 chr1B 90.523 1931 103 37 821 2708 37318032 37319925 0.000000e+00 2479.0
5 TraesCS1B01G055400 chr1B 84.274 248 34 4 2355 2599 29590726 29590481 2.590000e-58 237.0
6 TraesCS1B01G055400 chrUn 93.757 3428 141 32 910 4316 289178 285803 0.000000e+00 5077.0
7 TraesCS1B01G055400 chrUn 84.790 2025 222 48 2709 4666 223066 225071 0.000000e+00 1954.0
8 TraesCS1B01G055400 chrUn 96.947 1048 29 2 3636 4681 258723 257677 0.000000e+00 1755.0
9 TraesCS1B01G055400 chrUn 88.337 986 73 17 910 1879 221917 222876 0.000000e+00 1146.0
10 TraesCS1B01G055400 chrUn 92.993 685 45 3 3 684 290863 290179 0.000000e+00 996.0
11 TraesCS1B01G055400 chrUn 94.027 519 16 4 4806 5309 283968 283450 0.000000e+00 773.0
12 TraesCS1B01G055400 chrUn 100.000 259 0 0 5306 5564 181265134 181264876 3.900000e-131 479.0
13 TraesCS1B01G055400 chrUn 90.759 303 10 7 4509 4811 284312 284028 6.760000e-104 388.0
14 TraesCS1B01G055400 chrUn 98.049 205 3 1 5361 5564 413419605 413419809 6.860000e-94 355.0
15 TraesCS1B01G055400 chrUn 97.516 161 4 0 4308 4468 284467 284307 5.490000e-70 276.0
16 TraesCS1B01G055400 chrUn 81.967 183 30 2 1902 2081 222866 223048 9.650000e-33 152.0
17 TraesCS1B01G055400 chr1D 96.427 1875 53 10 2681 4550 21887073 21888938 0.000000e+00 3079.0
18 TraesCS1B01G055400 chr1D 92.400 1829 85 21 898 2708 21885335 21887127 0.000000e+00 2558.0
19 TraesCS1B01G055400 chr1D 92.295 1778 86 24 954 2707 21928971 21927221 0.000000e+00 2477.0
20 TraesCS1B01G055400 chr1D 85.991 1856 186 39 2709 4506 21727990 21726151 0.000000e+00 1919.0
21 TraesCS1B01G055400 chr1D 98.212 783 11 1 3027 3806 21927016 21926234 0.000000e+00 1365.0
22 TraesCS1B01G055400 chr1D 91.667 816 56 5 3 815 21883354 21884160 0.000000e+00 1120.0
23 TraesCS1B01G055400 chr1D 89.630 810 55 8 1099 1879 21728996 21728187 0.000000e+00 1003.0
24 TraesCS1B01G055400 chr1D 86.765 748 87 12 8 750 62322725 62323465 0.000000e+00 822.0
25 TraesCS1B01G055400 chr1D 83.490 745 112 10 3486 4223 22102294 22103034 0.000000e+00 684.0
26 TraesCS1B01G055400 chr1D 91.020 490 37 4 3803 4291 21911631 21911148 0.000000e+00 654.0
27 TraesCS1B01G055400 chr1D 95.703 256 11 0 2681 2936 21927274 21927019 4.010000e-111 412.0
28 TraesCS1B01G055400 chr1D 90.066 151 2 7 792 932 21884178 21884325 3.420000e-42 183.0
29 TraesCS1B01G055400 chr1D 90.909 121 6 3 821 937 21729218 21729099 2.080000e-34 158.0
30 TraesCS1B01G055400 chr2B 88.243 723 79 6 1 719 418961428 418962148 0.000000e+00 859.0
31 TraesCS1B01G055400 chr6A 86.518 764 89 5 1 750 111557903 111557140 0.000000e+00 828.0
32 TraesCS1B01G055400 chr7D 86.280 758 89 6 1 744 249619055 249618299 0.000000e+00 809.0
33 TraesCS1B01G055400 chr5B 86.285 751 94 8 1 744 230294815 230295563 0.000000e+00 808.0
34 TraesCS1B01G055400 chr7B 86.019 751 95 10 3 748 124238230 124238975 0.000000e+00 797.0
35 TraesCS1B01G055400 chr4B 86.059 746 99 5 2 744 445648311 445649054 0.000000e+00 797.0
36 TraesCS1B01G055400 chr4B 83.801 463 50 15 2128 2569 1247862 1247404 3.100000e-112 416.0
37 TraesCS1B01G055400 chr4B 96.262 214 7 1 5351 5564 2354891 2355103 3.190000e-92 350.0
38 TraesCS1B01G055400 chr5A 86.198 739 90 9 3 734 44930634 44929901 0.000000e+00 789.0
39 TraesCS1B01G055400 chr5A 98.400 250 3 1 5316 5564 457919464 457919215 6.620000e-119 438.0
40 TraesCS1B01G055400 chr5A 82.468 462 58 16 2139 2582 679497400 679497856 3.140000e-102 383.0
41 TraesCS1B01G055400 chr3D 91.667 504 33 5 4812 5313 18813675 18814171 0.000000e+00 689.0
42 TraesCS1B01G055400 chr3D 85.595 479 54 7 2139 2604 264714473 264714949 6.480000e-134 488.0
43 TraesCS1B01G055400 chr3D 97.500 40 1 0 2086 2125 338883512 338883473 1.000000e-07 69.4
44 TraesCS1B01G055400 chr5D 90.873 504 40 5 4812 5313 406200926 406200427 0.000000e+00 671.0
45 TraesCS1B01G055400 chr4D 86.099 446 44 13 2140 2569 353045898 353046341 1.090000e-126 464.0
46 TraesCS1B01G055400 chr3A 84.583 480 56 8 2139 2604 325304575 325305050 1.410000e-125 460.0
47 TraesCS1B01G055400 chr6B 97.328 262 6 1 5304 5564 140407215 140406954 1.420000e-120 444.0
48 TraesCS1B01G055400 chr6B 97.308 260 6 1 5306 5564 140443824 140443565 1.840000e-119 440.0
49 TraesCS1B01G055400 chr6B 84.116 447 40 16 2139 2569 460084476 460084907 2.410000e-108 403.0
50 TraesCS1B01G055400 chr6B 81.250 128 21 2 5084 5210 649922601 649922726 3.550000e-17 100.0
51 TraesCS1B01G055400 chr4A 99.177 243 2 0 5322 5564 378149469 378149227 6.620000e-119 438.0
52 TraesCS1B01G055400 chr3B 96.525 259 7 2 5306 5564 517248807 517249063 1.430000e-115 427.0
53 TraesCS1B01G055400 chr1A 95.785 261 8 3 5306 5564 65655077 65655336 8.620000e-113 418.0
54 TraesCS1B01G055400 chr6D 90.968 310 25 3 5005 5313 405665596 405665903 1.120000e-111 414.0
55 TraesCS1B01G055400 chr6D 96.226 159 6 0 4812 4970 405664546 405664704 1.540000e-65 261.0
56 TraesCS1B01G055400 chr6D 100.000 30 0 0 2086 2115 129708936 129708965 7.790000e-04 56.5
57 TraesCS1B01G055400 chr7A 100.000 28 0 0 2086 2113 689307622 689307649 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G055400 chr1B 38116739 38122302 5563 False 10275.000000 10275 100.000000 1 5564 1 chr1B.!!$F1 5563
1 TraesCS1B01G055400 chr1B 37568641 37572564 3923 True 2956.500000 3301 93.758500 792 4681 2 chr1B.!!$R2 3889
2 TraesCS1B01G055400 chr1B 37318032 37321491 3459 False 2499.000000 2519 92.680000 821 4291 2 chr1B.!!$F2 3470
3 TraesCS1B01G055400 chrUn 257677 258723 1046 True 1755.000000 1755 96.947000 3636 4681 1 chrUn.!!$R1 1045
4 TraesCS1B01G055400 chrUn 283450 290863 7413 True 1502.000000 5077 93.810400 3 5309 5 chrUn.!!$R3 5306
5 TraesCS1B01G055400 chrUn 221917 225071 3154 False 1084.000000 1954 85.031333 910 4666 3 chrUn.!!$F2 3756
6 TraesCS1B01G055400 chr1D 21883354 21888938 5584 False 1735.000000 3079 92.640000 3 4550 4 chr1D.!!$F3 4547
7 TraesCS1B01G055400 chr1D 21926234 21928971 2737 True 1418.000000 2477 95.403333 954 3806 3 chr1D.!!$R3 2852
8 TraesCS1B01G055400 chr1D 21726151 21729218 3067 True 1026.666667 1919 88.843333 821 4506 3 chr1D.!!$R2 3685
9 TraesCS1B01G055400 chr1D 62322725 62323465 740 False 822.000000 822 86.765000 8 750 1 chr1D.!!$F2 742
10 TraesCS1B01G055400 chr1D 22102294 22103034 740 False 684.000000 684 83.490000 3486 4223 1 chr1D.!!$F1 737
11 TraesCS1B01G055400 chr2B 418961428 418962148 720 False 859.000000 859 88.243000 1 719 1 chr2B.!!$F1 718
12 TraesCS1B01G055400 chr6A 111557140 111557903 763 True 828.000000 828 86.518000 1 750 1 chr6A.!!$R1 749
13 TraesCS1B01G055400 chr7D 249618299 249619055 756 True 809.000000 809 86.280000 1 744 1 chr7D.!!$R1 743
14 TraesCS1B01G055400 chr5B 230294815 230295563 748 False 808.000000 808 86.285000 1 744 1 chr5B.!!$F1 743
15 TraesCS1B01G055400 chr7B 124238230 124238975 745 False 797.000000 797 86.019000 3 748 1 chr7B.!!$F1 745
16 TraesCS1B01G055400 chr4B 445648311 445649054 743 False 797.000000 797 86.059000 2 744 1 chr4B.!!$F2 742
17 TraesCS1B01G055400 chr5A 44929901 44930634 733 True 789.000000 789 86.198000 3 734 1 chr5A.!!$R1 731
18 TraesCS1B01G055400 chr6D 405664546 405665903 1357 False 337.500000 414 93.597000 4812 5313 2 chr6D.!!$F2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 445 0.326264 ATGGACAGACTGACAAGGGC 59.674 55.000 10.08 0.0 0.00 5.19 F
1237 3066 1.153086 GGTTGCCGAGCTCCATGAT 60.153 57.895 8.47 0.0 0.00 2.45 F
1849 3722 0.179073 AACACTCGAAGCTGTGCAGT 60.179 50.000 2.01 0.0 35.75 4.40 F
2774 4693 0.790814 GAGAGCGCACACCAAGTTAC 59.209 55.000 11.47 0.0 0.00 2.50 F
3993 5981 0.319986 TCAAGCATGTTGTCGCGGTA 60.320 50.000 6.13 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 3132 0.871722 TGGCGGAAACAAGATCAACG 59.128 50.000 0.00 0.0 0.00 4.10 R
2741 4660 1.205655 CGCTCTCCAAGAGTTGATGGA 59.794 52.381 5.90 0.0 44.12 3.41 R
3742 5730 1.686052 GAGATCAGCTTCAGTCCGGAT 59.314 52.381 7.81 0.0 0.00 4.18 R
4116 6107 2.702592 ACAACACCCTCACGAAGAAA 57.297 45.000 0.00 0.0 0.00 2.52 R
5361 9670 0.177141 ATGCGCTCGGGCTTAGTTTA 59.823 50.000 9.73 0.0 36.09 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 4.396790 GTGTAACTTTTGTTGACCCACTCA 59.603 41.667 0.00 0.00 43.41 3.41
216 221 2.896801 CGTTTGTGGAGCAGCGCTT 61.897 57.895 7.50 0.00 39.88 4.68
245 250 1.376553 GCAAGAGGTGGAGTGGCTC 60.377 63.158 0.00 0.00 0.00 4.70
306 313 3.833645 CCGGCAGGTGCTACGCTA 61.834 66.667 1.26 0.00 41.70 4.26
321 328 2.031870 ACGCTATGTCATGCCTAGTCA 58.968 47.619 0.00 0.00 0.00 3.41
348 355 1.777030 CTACGCGCGACAGATCCTCT 61.777 60.000 39.36 12.61 0.00 3.69
371 378 0.387202 ATCTTCGCGTCTGGATGGAG 59.613 55.000 5.77 0.00 0.00 3.86
426 444 1.905215 AGATGGACAGACTGACAAGGG 59.095 52.381 10.08 0.00 0.00 3.95
427 445 0.326264 ATGGACAGACTGACAAGGGC 59.674 55.000 10.08 0.00 0.00 5.19
609 633 6.690194 GTGAGAGCACTCCAAATTATCAAT 57.310 37.500 8.77 0.00 41.84 2.57
1237 3066 1.153086 GGTTGCCGAGCTCCATGAT 60.153 57.895 8.47 0.00 0.00 2.45
1288 3117 2.591571 TCATGCATCTCCACTCTTCG 57.408 50.000 0.00 0.00 0.00 3.79
1291 3120 3.447229 TCATGCATCTCCACTCTTCGTTA 59.553 43.478 0.00 0.00 0.00 3.18
1292 3121 3.953712 TGCATCTCCACTCTTCGTTAA 57.046 42.857 0.00 0.00 0.00 2.01
1294 3123 5.592104 TGCATCTCCACTCTTCGTTAATA 57.408 39.130 0.00 0.00 0.00 0.98
1296 3125 5.127194 TGCATCTCCACTCTTCGTTAATACT 59.873 40.000 0.00 0.00 0.00 2.12
1297 3126 5.688176 GCATCTCCACTCTTCGTTAATACTC 59.312 44.000 0.00 0.00 0.00 2.59
1298 3127 6.460399 GCATCTCCACTCTTCGTTAATACTCT 60.460 42.308 0.00 0.00 0.00 3.24
1299 3128 7.484975 CATCTCCACTCTTCGTTAATACTCTT 58.515 38.462 0.00 0.00 0.00 2.85
1300 3129 8.622157 CATCTCCACTCTTCGTTAATACTCTTA 58.378 37.037 0.00 0.00 0.00 2.10
1301 3130 8.211116 TCTCCACTCTTCGTTAATACTCTTAG 57.789 38.462 0.00 0.00 0.00 2.18
1302 3131 7.828223 TCTCCACTCTTCGTTAATACTCTTAGT 59.172 37.037 0.00 0.00 0.00 2.24
1303 3132 7.983307 TCCACTCTTCGTTAATACTCTTAGTC 58.017 38.462 0.00 0.00 0.00 2.59
1304 3133 6.906143 CCACTCTTCGTTAATACTCTTAGTCG 59.094 42.308 0.00 0.00 0.00 4.18
1434 3277 3.006728 ATGTTCCCGCGGGAGGAA 61.007 61.111 42.70 32.00 46.06 3.36
1508 3351 1.278238 GACGATGAACAAGGTAGCCG 58.722 55.000 0.00 0.00 0.00 5.52
1520 3366 1.069935 GTAGCCGATTCTCCCTGCC 59.930 63.158 0.00 0.00 0.00 4.85
1638 3493 2.408050 GGCAGCGATTATGAAGACGAT 58.592 47.619 0.00 0.00 0.00 3.73
1647 3514 5.277490 CGATTATGAAGACGATGGCAATTGT 60.277 40.000 7.40 0.00 32.70 2.71
1849 3722 0.179073 AACACTCGAAGCTGTGCAGT 60.179 50.000 2.01 0.00 35.75 4.40
2252 4163 3.865745 CGTAGTAGGTCCTTTGCAAGATG 59.134 47.826 0.00 0.00 0.00 2.90
2315 4226 3.404564 GCGTTAGTAAGTTGAATGCACG 58.595 45.455 0.00 0.00 35.58 5.34
2320 4231 7.618442 CGTTAGTAAGTTGAATGCACGATATT 58.382 34.615 0.00 0.00 0.00 1.28
2397 4308 7.722363 TGCTATGACATAGAACCGAAGAATTA 58.278 34.615 23.87 0.00 34.77 1.40
2399 4310 7.148722 GCTATGACATAGAACCGAAGAATTAGC 60.149 40.741 23.87 3.62 34.77 3.09
2610 4521 0.833949 TGTGGGTAGTGCACAACTCA 59.166 50.000 21.04 9.14 40.56 3.41
2670 4589 3.605634 ACCAACTTGCTTTTGTTTTCCC 58.394 40.909 0.00 0.00 0.00 3.97
2671 4590 3.263170 ACCAACTTGCTTTTGTTTTCCCT 59.737 39.130 0.00 0.00 0.00 4.20
2672 4591 4.468153 ACCAACTTGCTTTTGTTTTCCCTA 59.532 37.500 0.00 0.00 0.00 3.53
2673 4592 5.046231 ACCAACTTGCTTTTGTTTTCCCTAA 60.046 36.000 0.00 0.00 0.00 2.69
2674 4593 5.877564 CCAACTTGCTTTTGTTTTCCCTAAA 59.122 36.000 0.00 0.00 0.00 1.85
2675 4594 6.372937 CCAACTTGCTTTTGTTTTCCCTAAAA 59.627 34.615 0.00 0.00 32.15 1.52
2676 4595 7.066887 CCAACTTGCTTTTGTTTTCCCTAAAAT 59.933 33.333 0.00 0.00 36.96 1.82
2677 4596 9.103861 CAACTTGCTTTTGTTTTCCCTAAAATA 57.896 29.630 0.00 0.00 36.96 1.40
2678 4597 9.674068 AACTTGCTTTTGTTTTCCCTAAAATAA 57.326 25.926 0.00 0.00 36.96 1.40
2679 4598 9.845740 ACTTGCTTTTGTTTTCCCTAAAATAAT 57.154 25.926 0.00 0.00 36.13 1.28
2691 4610 9.849166 TTTCCCTAAAATAATAACTTGCTTTCG 57.151 29.630 0.00 0.00 0.00 3.46
2692 4611 8.570068 TCCCTAAAATAATAACTTGCTTTCGT 57.430 30.769 0.00 0.00 0.00 3.85
2693 4612 9.016438 TCCCTAAAATAATAACTTGCTTTCGTT 57.984 29.630 0.00 0.00 0.00 3.85
2694 4613 9.634163 CCCTAAAATAATAACTTGCTTTCGTTT 57.366 29.630 0.00 0.00 0.00 3.60
2741 4660 7.452880 TTGTTCTCACTAAATAATTGCAGCT 57.547 32.000 0.00 0.00 0.00 4.24
2774 4693 0.790814 GAGAGCGCACACCAAGTTAC 59.209 55.000 11.47 0.00 0.00 2.50
2791 4710 9.243105 ACCAAGTTACATGCTACAATTATTCTT 57.757 29.630 0.00 0.00 0.00 2.52
2830 4749 5.420739 GCTTTGAACCCTTGTATCCCATTAA 59.579 40.000 0.00 0.00 0.00 1.40
2904 4823 2.767960 GTCTTTAACCGTCCCAGGGATA 59.232 50.000 12.84 0.00 32.73 2.59
3127 5051 7.500227 CCATGTTCAAAGGATCTGCTCTTTATA 59.500 37.037 0.00 0.00 32.60 0.98
3742 5730 7.222161 ACTTTCTGCATATGCTGAGATTGATA 58.778 34.615 28.86 15.30 46.84 2.15
3993 5981 0.319986 TCAAGCATGTTGTCGCGGTA 60.320 50.000 6.13 0.00 0.00 4.02
4116 6107 3.461085 ACTCAATCTTGGACTATGGCCAT 59.539 43.478 24.45 24.45 34.90 4.40
4157 6150 1.202879 TGCTCCAAAGGATTGTCGGTT 60.203 47.619 0.00 0.00 34.60 4.44
4653 8027 8.177119 TGTGGTAATAAAGCAGAAGTTGAAAT 57.823 30.769 0.00 0.00 35.94 2.17
4734 8108 8.514594 CAAGAACTTGGAGCAATTTAACAGATA 58.485 33.333 6.66 0.00 36.95 1.98
4757 8131 2.765689 ACACAATCTTGAAACCCCCA 57.234 45.000 0.00 0.00 0.00 4.96
4759 8133 2.965147 ACACAATCTTGAAACCCCCAAG 59.035 45.455 0.00 0.00 41.63 3.61
4777 8151 5.652452 CCCCAAGAAGTAAGGGAAATACTTG 59.348 44.000 3.85 0.00 45.80 3.16
4852 8292 2.122768 CCTATCTCTCCTTGGGTGCTT 58.877 52.381 0.00 0.00 0.00 3.91
5068 9365 2.094130 CCTTAACGTGTCTTCCTCTCCC 60.094 54.545 0.00 0.00 0.00 4.30
5069 9366 2.297698 TAACGTGTCTTCCTCTCCCA 57.702 50.000 0.00 0.00 0.00 4.37
5070 9367 1.420430 AACGTGTCTTCCTCTCCCAA 58.580 50.000 0.00 0.00 0.00 4.12
5133 9430 0.897863 TGTAAAGCATGTGTGGGGGC 60.898 55.000 0.00 0.00 0.00 5.80
5267 9576 9.947669 GTAGTCGAACACAAGTTATATGAGTAT 57.052 33.333 0.00 0.00 38.30 2.12
5372 9681 2.509166 AGGGTTGCTAAACTAAGCCC 57.491 50.000 0.00 0.00 43.62 5.19
5373 9682 1.092348 GGGTTGCTAAACTAAGCCCG 58.908 55.000 0.00 0.00 42.05 6.13
5374 9683 1.339342 GGGTTGCTAAACTAAGCCCGA 60.339 52.381 0.00 0.00 42.05 5.14
5375 9684 2.007608 GGTTGCTAAACTAAGCCCGAG 58.992 52.381 0.00 0.00 42.05 4.63
5376 9685 1.397343 GTTGCTAAACTAAGCCCGAGC 59.603 52.381 0.00 0.00 42.05 5.03
5377 9686 0.459585 TGCTAAACTAAGCCCGAGCG 60.460 55.000 0.00 0.00 46.67 5.03
5378 9687 1.763200 GCTAAACTAAGCCCGAGCGC 61.763 60.000 0.00 0.00 46.67 5.92
5379 9688 0.459585 CTAAACTAAGCCCGAGCGCA 60.460 55.000 11.47 0.00 46.67 6.09
5380 9689 0.177141 TAAACTAAGCCCGAGCGCAT 59.823 50.000 11.47 0.00 46.67 4.73
5381 9690 0.177141 AAACTAAGCCCGAGCGCATA 59.823 50.000 11.47 0.00 46.67 3.14
5382 9691 0.393077 AACTAAGCCCGAGCGCATAT 59.607 50.000 11.47 0.00 46.67 1.78
5383 9692 0.393077 ACTAAGCCCGAGCGCATATT 59.607 50.000 11.47 0.00 46.67 1.28
5384 9693 1.202651 ACTAAGCCCGAGCGCATATTT 60.203 47.619 11.47 0.00 46.67 1.40
5385 9694 1.461127 CTAAGCCCGAGCGCATATTTC 59.539 52.381 11.47 0.00 46.67 2.17
5386 9695 1.166531 AAGCCCGAGCGCATATTTCC 61.167 55.000 11.47 0.00 46.67 3.13
5387 9696 1.598130 GCCCGAGCGCATATTTCCT 60.598 57.895 11.47 0.00 0.00 3.36
5388 9697 0.320421 GCCCGAGCGCATATTTCCTA 60.320 55.000 11.47 0.00 0.00 2.94
5389 9698 1.676014 GCCCGAGCGCATATTTCCTAT 60.676 52.381 11.47 0.00 0.00 2.57
5390 9699 2.699954 CCCGAGCGCATATTTCCTATT 58.300 47.619 11.47 0.00 0.00 1.73
5391 9700 2.673368 CCCGAGCGCATATTTCCTATTC 59.327 50.000 11.47 0.00 0.00 1.75
5392 9701 3.589988 CCGAGCGCATATTTCCTATTCT 58.410 45.455 11.47 0.00 0.00 2.40
5393 9702 3.369147 CCGAGCGCATATTTCCTATTCTG 59.631 47.826 11.47 0.00 0.00 3.02
5394 9703 3.181526 CGAGCGCATATTTCCTATTCTGC 60.182 47.826 11.47 0.00 0.00 4.26
5396 9705 3.109230 CGCATATTTCCTATTCTGCGC 57.891 47.619 0.00 0.00 44.61 6.09
5397 9706 2.738846 CGCATATTTCCTATTCTGCGCT 59.261 45.455 9.73 0.00 44.61 5.92
5398 9707 3.181526 CGCATATTTCCTATTCTGCGCTC 60.182 47.826 9.73 0.00 44.61 5.03
5399 9708 3.126000 GCATATTTCCTATTCTGCGCTCC 59.874 47.826 9.73 0.00 0.00 4.70
5400 9709 1.871080 ATTTCCTATTCTGCGCTCCG 58.129 50.000 9.73 0.00 0.00 4.63
5401 9710 0.179084 TTTCCTATTCTGCGCTCCGG 60.179 55.000 9.73 0.00 0.00 5.14
5402 9711 1.327690 TTCCTATTCTGCGCTCCGGT 61.328 55.000 9.73 0.00 0.00 5.28
5403 9712 1.300233 CCTATTCTGCGCTCCGGTC 60.300 63.158 9.73 0.00 0.00 4.79
5404 9713 1.736586 CTATTCTGCGCTCCGGTCT 59.263 57.895 9.73 0.00 0.00 3.85
5405 9714 0.952280 CTATTCTGCGCTCCGGTCTA 59.048 55.000 9.73 0.00 0.00 2.59
5406 9715 1.337071 CTATTCTGCGCTCCGGTCTAA 59.663 52.381 9.73 0.00 0.00 2.10
5407 9716 0.179108 ATTCTGCGCTCCGGTCTAAC 60.179 55.000 9.73 0.00 0.00 2.34
5408 9717 1.529152 TTCTGCGCTCCGGTCTAACA 61.529 55.000 9.73 0.00 0.00 2.41
5409 9718 1.080093 CTGCGCTCCGGTCTAACAA 60.080 57.895 9.73 0.00 0.00 2.83
5410 9719 1.352156 CTGCGCTCCGGTCTAACAAC 61.352 60.000 9.73 0.00 0.00 3.32
5411 9720 2.442188 GCGCTCCGGTCTAACAACG 61.442 63.158 0.00 0.00 0.00 4.10
5412 9721 2.442188 CGCTCCGGTCTAACAACGC 61.442 63.158 0.00 0.00 0.00 4.84
5413 9722 2.442188 GCTCCGGTCTAACAACGCG 61.442 63.158 3.53 3.53 0.00 6.01
5414 9723 2.431260 TCCGGTCTAACAACGCGC 60.431 61.111 5.73 0.00 0.00 6.86
5415 9724 2.735478 CCGGTCTAACAACGCGCA 60.735 61.111 5.73 0.00 0.00 6.09
5416 9725 2.468532 CGGTCTAACAACGCGCAC 59.531 61.111 5.73 0.00 0.00 5.34
5417 9726 2.858158 GGTCTAACAACGCGCACC 59.142 61.111 5.73 0.00 0.00 5.01
5418 9727 2.674084 GGTCTAACAACGCGCACCC 61.674 63.158 5.73 0.00 0.00 4.61
5419 9728 1.957186 GTCTAACAACGCGCACCCA 60.957 57.895 5.73 0.00 0.00 4.51
5420 9729 1.227586 TCTAACAACGCGCACCCAA 60.228 52.632 5.73 0.00 0.00 4.12
5421 9730 1.206578 CTAACAACGCGCACCCAAG 59.793 57.895 5.73 0.00 0.00 3.61
5422 9731 2.182614 CTAACAACGCGCACCCAAGG 62.183 60.000 5.73 0.00 0.00 3.61
5423 9732 2.661840 TAACAACGCGCACCCAAGGA 62.662 55.000 5.73 0.00 0.00 3.36
5424 9733 3.726517 CAACGCGCACCCAAGGAG 61.727 66.667 5.73 0.00 0.00 3.69
5429 9738 4.473520 CGCACCCAAGGAGCCGAT 62.474 66.667 0.00 0.00 35.94 4.18
5430 9739 2.908015 GCACCCAAGGAGCCGATA 59.092 61.111 0.00 0.00 33.27 2.92
5431 9740 1.223487 GCACCCAAGGAGCCGATAA 59.777 57.895 0.00 0.00 33.27 1.75
5432 9741 0.393808 GCACCCAAGGAGCCGATAAA 60.394 55.000 0.00 0.00 33.27 1.40
5433 9742 1.953311 GCACCCAAGGAGCCGATAAAA 60.953 52.381 0.00 0.00 33.27 1.52
5434 9743 1.743394 CACCCAAGGAGCCGATAAAAC 59.257 52.381 0.00 0.00 0.00 2.43
5435 9744 1.353022 ACCCAAGGAGCCGATAAAACA 59.647 47.619 0.00 0.00 0.00 2.83
5436 9745 2.017049 CCCAAGGAGCCGATAAAACAG 58.983 52.381 0.00 0.00 0.00 3.16
5437 9746 1.401905 CCAAGGAGCCGATAAAACAGC 59.598 52.381 0.00 0.00 0.00 4.40
5438 9747 1.062587 CAAGGAGCCGATAAAACAGCG 59.937 52.381 0.00 0.00 35.28 5.18
5439 9748 1.090052 AGGAGCCGATAAAACAGCGC 61.090 55.000 0.00 0.00 33.78 5.92
5440 9749 1.366111 GGAGCCGATAAAACAGCGCA 61.366 55.000 11.47 0.00 33.78 6.09
5441 9750 0.247695 GAGCCGATAAAACAGCGCAC 60.248 55.000 11.47 0.00 33.78 5.34
5442 9751 0.953471 AGCCGATAAAACAGCGCACA 60.953 50.000 11.47 0.00 33.78 4.57
5443 9752 0.793104 GCCGATAAAACAGCGCACAC 60.793 55.000 11.47 0.00 33.78 3.82
5444 9753 0.515127 CCGATAAAACAGCGCACACA 59.485 50.000 11.47 0.00 33.78 3.72
5445 9754 1.591248 CGATAAAACAGCGCACACAC 58.409 50.000 11.47 0.00 0.00 3.82
5446 9755 1.724654 CGATAAAACAGCGCACACACC 60.725 52.381 11.47 0.00 0.00 4.16
5447 9756 1.265635 GATAAAACAGCGCACACACCA 59.734 47.619 11.47 0.00 0.00 4.17
5448 9757 1.313772 TAAAACAGCGCACACACCAT 58.686 45.000 11.47 0.00 0.00 3.55
5449 9758 0.248990 AAAACAGCGCACACACCATG 60.249 50.000 11.47 0.00 0.00 3.66
5450 9759 2.074230 AAACAGCGCACACACCATGG 62.074 55.000 11.19 11.19 0.00 3.66
5451 9760 2.979676 CAGCGCACACACCATGGT 60.980 61.111 13.00 13.00 0.00 3.55
5452 9761 1.670730 CAGCGCACACACCATGGTA 60.671 57.895 19.28 0.00 0.00 3.25
5453 9762 1.671054 AGCGCACACACCATGGTAC 60.671 57.895 19.28 4.05 0.00 3.34
5465 9774 2.345991 TGGTACAGCCGAACCAGC 59.654 61.111 0.00 0.00 40.84 4.85
5466 9775 2.813908 GGTACAGCCGAACCAGCG 60.814 66.667 0.00 0.00 35.73 5.18
5467 9776 3.488090 GTACAGCCGAACCAGCGC 61.488 66.667 0.00 0.00 34.64 5.92
5468 9777 3.691342 TACAGCCGAACCAGCGCT 61.691 61.111 2.64 2.64 34.64 5.92
5469 9778 3.642778 TACAGCCGAACCAGCGCTC 62.643 63.158 7.13 0.00 34.64 5.03
5475 9784 4.021925 GAACCAGCGCTCCCACCT 62.022 66.667 7.13 0.00 0.00 4.00
5476 9785 4.335647 AACCAGCGCTCCCACCTG 62.336 66.667 7.13 0.00 0.00 4.00
5478 9787 4.020617 CCAGCGCTCCCACCTGAA 62.021 66.667 7.13 0.00 0.00 3.02
5479 9788 2.743928 CAGCGCTCCCACCTGAAC 60.744 66.667 7.13 0.00 0.00 3.18
5480 9789 4.379243 AGCGCTCCCACCTGAACG 62.379 66.667 2.64 0.00 0.00 3.95
5481 9790 4.681978 GCGCTCCCACCTGAACGT 62.682 66.667 0.00 0.00 0.00 3.99
5482 9791 2.967397 CGCTCCCACCTGAACGTA 59.033 61.111 0.00 0.00 0.00 3.57
5483 9792 1.290955 CGCTCCCACCTGAACGTAA 59.709 57.895 0.00 0.00 0.00 3.18
5484 9793 0.320073 CGCTCCCACCTGAACGTAAA 60.320 55.000 0.00 0.00 0.00 2.01
5485 9794 1.154197 GCTCCCACCTGAACGTAAAC 58.846 55.000 0.00 0.00 0.00 2.01
5486 9795 1.425412 CTCCCACCTGAACGTAAACG 58.575 55.000 0.04 0.04 46.33 3.60
5487 9796 0.600782 TCCCACCTGAACGTAAACGC 60.601 55.000 1.74 0.00 44.43 4.84
5488 9797 1.571215 CCCACCTGAACGTAAACGCC 61.571 60.000 1.74 0.00 44.43 5.68
5489 9798 0.601841 CCACCTGAACGTAAACGCCT 60.602 55.000 1.74 0.00 44.43 5.52
5490 9799 0.788391 CACCTGAACGTAAACGCCTC 59.212 55.000 1.74 0.58 44.43 4.70
5491 9800 0.390124 ACCTGAACGTAAACGCCTCA 59.610 50.000 1.74 5.22 44.43 3.86
5492 9801 0.788391 CCTGAACGTAAACGCCTCAC 59.212 55.000 1.74 0.00 44.43 3.51
5493 9802 1.604693 CCTGAACGTAAACGCCTCACT 60.605 52.381 1.74 0.00 44.43 3.41
5494 9803 2.352030 CCTGAACGTAAACGCCTCACTA 60.352 50.000 1.74 0.00 44.43 2.74
5495 9804 3.311106 CTGAACGTAAACGCCTCACTAA 58.689 45.455 1.74 0.00 44.43 2.24
5496 9805 3.715495 TGAACGTAAACGCCTCACTAAA 58.285 40.909 1.74 0.00 44.43 1.85
5497 9806 3.490526 TGAACGTAAACGCCTCACTAAAC 59.509 43.478 1.74 0.00 44.43 2.01
5498 9807 3.096489 ACGTAAACGCCTCACTAAACA 57.904 42.857 1.74 0.00 44.43 2.83
5499 9808 3.656559 ACGTAAACGCCTCACTAAACAT 58.343 40.909 1.74 0.00 44.43 2.71
5500 9809 4.808558 ACGTAAACGCCTCACTAAACATA 58.191 39.130 1.74 0.00 44.43 2.29
5501 9810 4.860907 ACGTAAACGCCTCACTAAACATAG 59.139 41.667 1.74 0.00 44.43 2.23
5502 9811 4.860907 CGTAAACGCCTCACTAAACATAGT 59.139 41.667 0.00 0.00 0.00 2.12
5503 9812 6.029607 CGTAAACGCCTCACTAAACATAGTA 58.970 40.000 0.00 0.00 0.00 1.82
5504 9813 6.527722 CGTAAACGCCTCACTAAACATAGTAA 59.472 38.462 0.00 0.00 0.00 2.24
5505 9814 6.716898 AAACGCCTCACTAAACATAGTAAC 57.283 37.500 0.00 0.00 0.00 2.50
5506 9815 4.752146 ACGCCTCACTAAACATAGTAACC 58.248 43.478 0.00 0.00 0.00 2.85
5507 9816 4.221262 ACGCCTCACTAAACATAGTAACCA 59.779 41.667 0.00 0.00 0.00 3.67
5508 9817 4.565564 CGCCTCACTAAACATAGTAACCAC 59.434 45.833 0.00 0.00 0.00 4.16
5509 9818 4.874396 GCCTCACTAAACATAGTAACCACC 59.126 45.833 0.00 0.00 0.00 4.61
5510 9819 5.338137 GCCTCACTAAACATAGTAACCACCT 60.338 44.000 0.00 0.00 0.00 4.00
5511 9820 6.338937 CCTCACTAAACATAGTAACCACCTC 58.661 44.000 0.00 0.00 0.00 3.85
5512 9821 6.290294 TCACTAAACATAGTAACCACCTCC 57.710 41.667 0.00 0.00 0.00 4.30
5513 9822 5.781306 TCACTAAACATAGTAACCACCTCCA 59.219 40.000 0.00 0.00 0.00 3.86
5514 9823 6.442564 TCACTAAACATAGTAACCACCTCCAT 59.557 38.462 0.00 0.00 0.00 3.41
5515 9824 6.761714 CACTAAACATAGTAACCACCTCCATC 59.238 42.308 0.00 0.00 0.00 3.51
5516 9825 4.772886 AACATAGTAACCACCTCCATCC 57.227 45.455 0.00 0.00 0.00 3.51
5517 9826 3.731431 ACATAGTAACCACCTCCATCCA 58.269 45.455 0.00 0.00 0.00 3.41
5518 9827 4.307259 ACATAGTAACCACCTCCATCCAT 58.693 43.478 0.00 0.00 0.00 3.41
5519 9828 4.726825 ACATAGTAACCACCTCCATCCATT 59.273 41.667 0.00 0.00 0.00 3.16
5520 9829 5.193728 ACATAGTAACCACCTCCATCCATTT 59.806 40.000 0.00 0.00 0.00 2.32
5521 9830 6.388689 ACATAGTAACCACCTCCATCCATTTA 59.611 38.462 0.00 0.00 0.00 1.40
5522 9831 5.112129 AGTAACCACCTCCATCCATTTAC 57.888 43.478 0.00 0.00 0.00 2.01
5523 9832 4.788617 AGTAACCACCTCCATCCATTTACT 59.211 41.667 0.00 0.00 0.00 2.24
5524 9833 5.968167 AGTAACCACCTCCATCCATTTACTA 59.032 40.000 0.00 0.00 29.01 1.82
5525 9834 4.772886 ACCACCTCCATCCATTTACTAC 57.227 45.455 0.00 0.00 0.00 2.73
5526 9835 3.458487 ACCACCTCCATCCATTTACTACC 59.542 47.826 0.00 0.00 0.00 3.18
5527 9836 3.458118 CCACCTCCATCCATTTACTACCA 59.542 47.826 0.00 0.00 0.00 3.25
5528 9837 4.444876 CCACCTCCATCCATTTACTACCAG 60.445 50.000 0.00 0.00 0.00 4.00
5529 9838 4.164221 CACCTCCATCCATTTACTACCAGT 59.836 45.833 0.00 0.00 0.00 4.00
5530 9839 4.164221 ACCTCCATCCATTTACTACCAGTG 59.836 45.833 0.00 0.00 0.00 3.66
5531 9840 4.444876 CCTCCATCCATTTACTACCAGTGG 60.445 50.000 7.91 7.91 0.00 4.00
5532 9841 3.458118 TCCATCCATTTACTACCAGTGGG 59.542 47.826 15.21 0.00 41.29 4.61
5533 9842 3.458118 CCATCCATTTACTACCAGTGGGA 59.542 47.826 15.21 3.22 38.05 4.37
5534 9843 4.080015 CCATCCATTTACTACCAGTGGGAA 60.080 45.833 15.21 0.00 38.05 3.97
5535 9844 5.505780 CATCCATTTACTACCAGTGGGAAA 58.494 41.667 15.21 8.52 38.05 3.13
5536 9845 5.789574 TCCATTTACTACCAGTGGGAAAT 57.210 39.130 15.21 10.40 35.33 2.17
5537 9846 5.751586 TCCATTTACTACCAGTGGGAAATC 58.248 41.667 15.21 0.00 33.08 2.17
5538 9847 5.251932 TCCATTTACTACCAGTGGGAAATCA 59.748 40.000 15.21 0.00 33.08 2.57
5539 9848 5.949354 CCATTTACTACCAGTGGGAAATCAA 59.051 40.000 15.21 0.00 33.08 2.57
5540 9849 6.607198 CCATTTACTACCAGTGGGAAATCAAT 59.393 38.462 15.21 1.71 33.08 2.57
5541 9850 7.416664 CCATTTACTACCAGTGGGAAATCAATG 60.417 40.741 15.21 13.23 33.08 2.82
5547 9856 5.736951 CCAGTGGGAAATCAATGGTAAAA 57.263 39.130 0.00 0.00 44.89 1.52
5548 9857 6.107901 CCAGTGGGAAATCAATGGTAAAAA 57.892 37.500 0.00 0.00 44.89 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 3.338250 TTTCCCCCGGAGCAGCAT 61.338 61.111 0.73 0.00 31.21 3.79
173 175 2.297597 CTCCCAAGAGAGAAACGACACT 59.702 50.000 0.00 0.00 43.39 3.55
216 221 4.620723 TCCACCTCTTGCCTCTATCTTTA 58.379 43.478 0.00 0.00 0.00 1.85
306 313 1.140452 CCTGCTGACTAGGCATGACAT 59.860 52.381 0.00 0.00 39.07 3.06
348 355 2.034685 CCATCCAGACGCGAAGATTCTA 59.965 50.000 15.93 0.00 0.00 2.10
406 423 1.905215 CCCTTGTCAGTCTGTCCATCT 59.095 52.381 0.00 0.00 0.00 2.90
426 444 0.242555 GGGAGAGAGATCCGAATCGC 59.757 60.000 0.00 0.00 40.56 4.58
427 445 0.519519 CGGGAGAGAGATCCGAATCG 59.480 60.000 0.00 0.00 45.96 3.34
609 633 3.633065 GCCACCACTTACACCTACAAAAA 59.367 43.478 0.00 0.00 0.00 1.94
622 646 2.113139 CACCCGAAGCCACCACTT 59.887 61.111 0.00 0.00 0.00 3.16
685 709 6.484818 CATCAATCAATGCATACGACCATA 57.515 37.500 0.00 0.00 0.00 2.74
1062 2888 4.038080 GGTTCCTTGGCAACGGCG 62.038 66.667 4.80 4.80 42.47 6.46
1063 2889 2.757980 TAGGGTTCCTTGGCAACGGC 62.758 60.000 0.00 0.00 35.06 5.68
1064 2890 0.676782 CTAGGGTTCCTTGGCAACGG 60.677 60.000 0.00 2.42 35.06 4.44
1065 2891 1.305930 GCTAGGGTTCCTTGGCAACG 61.306 60.000 0.00 0.00 35.06 4.10
1066 2892 1.305930 CGCTAGGGTTCCTTGGCAAC 61.306 60.000 9.56 0.00 34.61 4.17
1067 2893 1.002624 CGCTAGGGTTCCTTGGCAA 60.003 57.895 9.56 0.00 34.61 4.52
1068 2894 2.221299 ACGCTAGGGTTCCTTGGCA 61.221 57.895 6.62 0.00 34.61 4.92
1210 3039 4.974438 TCGGCAACCTCCACCCCT 62.974 66.667 0.00 0.00 0.00 4.79
1288 3117 9.570488 ACAAGATCAACGACTAAGAGTATTAAC 57.430 33.333 0.00 0.00 0.00 2.01
1291 3120 9.141400 GAAACAAGATCAACGACTAAGAGTATT 57.859 33.333 0.00 0.00 0.00 1.89
1292 3121 7.760340 GGAAACAAGATCAACGACTAAGAGTAT 59.240 37.037 0.00 0.00 0.00 2.12
1294 3123 5.927115 GGAAACAAGATCAACGACTAAGAGT 59.073 40.000 0.00 0.00 0.00 3.24
1296 3125 4.921515 CGGAAACAAGATCAACGACTAAGA 59.078 41.667 0.00 0.00 0.00 2.10
1297 3126 4.434330 GCGGAAACAAGATCAACGACTAAG 60.434 45.833 0.00 0.00 0.00 2.18
1298 3127 3.430895 GCGGAAACAAGATCAACGACTAA 59.569 43.478 0.00 0.00 0.00 2.24
1299 3128 2.991190 GCGGAAACAAGATCAACGACTA 59.009 45.455 0.00 0.00 0.00 2.59
1300 3129 1.798813 GCGGAAACAAGATCAACGACT 59.201 47.619 0.00 0.00 0.00 4.18
1301 3130 1.136057 GGCGGAAACAAGATCAACGAC 60.136 52.381 0.00 0.00 0.00 4.34
1302 3131 1.153353 GGCGGAAACAAGATCAACGA 58.847 50.000 0.00 0.00 0.00 3.85
1303 3132 0.871722 TGGCGGAAACAAGATCAACG 59.128 50.000 0.00 0.00 0.00 4.10
1304 3133 2.293399 AGTTGGCGGAAACAAGATCAAC 59.707 45.455 0.00 0.00 34.87 3.18
1368 3211 1.531578 CATGGATCTGAATCTGCTGCG 59.468 52.381 0.00 0.00 32.12 5.18
1508 3351 1.227002 GACGTCGGCAGGGAGAATC 60.227 63.158 0.00 0.00 0.00 2.52
1520 3366 7.982371 AGTTAATTACTTATGGAAGACGTCG 57.018 36.000 10.46 0.00 36.45 5.12
1586 3441 2.223803 ACAGTCATCGACTCCTTCCT 57.776 50.000 0.00 0.00 41.37 3.36
1638 3493 4.635765 GCTAGTATCACTTGACAATTGCCA 59.364 41.667 5.05 0.00 0.00 4.92
1647 3514 3.617284 TGTCTCGGCTAGTATCACTTGA 58.383 45.455 0.00 0.00 0.00 3.02
1849 3722 3.051940 ACTCCCAGAGCCATAATCTCA 57.948 47.619 0.00 0.00 32.04 3.27
2315 4226 8.880991 TGTCCTCCTACCTAATCTACAATATC 57.119 38.462 0.00 0.00 0.00 1.63
2320 4231 5.834460 TGTTGTCCTCCTACCTAATCTACA 58.166 41.667 0.00 0.00 0.00 2.74
2397 4308 3.508845 TTTTAGTTTCTCTGCCCAGCT 57.491 42.857 0.00 0.00 0.00 4.24
2399 4310 5.964958 TTGATTTTAGTTTCTCTGCCCAG 57.035 39.130 0.00 0.00 0.00 4.45
2483 4394 3.449018 ACTGCTACCCTAGTGTGAGAATG 59.551 47.826 0.00 0.00 0.00 2.67
2672 4591 8.984764 GGGAAAACGAAAGCAAGTTATTATTTT 58.015 29.630 0.00 0.00 0.00 1.82
2673 4592 8.364894 AGGGAAAACGAAAGCAAGTTATTATTT 58.635 29.630 0.00 0.00 0.00 1.40
2674 4593 7.892609 AGGGAAAACGAAAGCAAGTTATTATT 58.107 30.769 0.00 0.00 0.00 1.40
2675 4594 7.462571 AGGGAAAACGAAAGCAAGTTATTAT 57.537 32.000 0.00 0.00 0.00 1.28
2676 4595 6.887626 AGGGAAAACGAAAGCAAGTTATTA 57.112 33.333 0.00 0.00 0.00 0.98
2677 4596 5.784578 AGGGAAAACGAAAGCAAGTTATT 57.215 34.783 0.00 0.00 0.00 1.40
2678 4597 6.887626 TTAGGGAAAACGAAAGCAAGTTAT 57.112 33.333 0.00 0.00 0.00 1.89
2679 4598 6.696441 TTTAGGGAAAACGAAAGCAAGTTA 57.304 33.333 0.00 0.00 0.00 2.24
2680 4599 5.585820 TTTAGGGAAAACGAAAGCAAGTT 57.414 34.783 0.00 0.00 0.00 2.66
2681 4600 5.585820 TTTTAGGGAAAACGAAAGCAAGT 57.414 34.783 0.00 0.00 29.38 3.16
2682 4601 8.757164 ATTATTTTAGGGAAAACGAAAGCAAG 57.243 30.769 0.00 0.00 37.37 4.01
2684 4603 9.628746 GTTATTATTTTAGGGAAAACGAAAGCA 57.371 29.630 0.00 0.00 37.37 3.91
2685 4604 9.850628 AGTTATTATTTTAGGGAAAACGAAAGC 57.149 29.630 0.00 0.00 37.37 3.51
2688 4607 9.628746 GCAAGTTATTATTTTAGGGAAAACGAA 57.371 29.630 0.00 0.00 37.37 3.85
2689 4608 9.016438 AGCAAGTTATTATTTTAGGGAAAACGA 57.984 29.630 0.00 0.00 37.37 3.85
2690 4609 9.634163 AAGCAAGTTATTATTTTAGGGAAAACG 57.366 29.630 0.00 0.00 37.37 3.60
2741 4660 1.205655 CGCTCTCCAAGAGTTGATGGA 59.794 52.381 5.90 0.00 44.12 3.41
2774 4693 6.432936 ACGCATGAAGAATAATTGTAGCATG 58.567 36.000 0.00 0.00 36.04 4.06
2791 4710 3.860641 TCAAAGCTTGATAGACGCATGA 58.139 40.909 0.00 0.00 34.08 3.07
2830 4749 6.294675 CCGAATGGCAAATATTCCATACACAT 60.295 38.462 8.66 0.00 41.92 3.21
2904 4823 2.869801 TCTTTTCAATCGTGACAGCGTT 59.130 40.909 0.00 0.00 31.90 4.84
3078 5002 5.768164 GGAGAAACAAATTAACCTGACCTCA 59.232 40.000 0.00 0.00 0.00 3.86
3457 5438 3.502086 ACTCCCATCTTGAGGGTGT 57.498 52.632 0.00 0.00 46.82 4.16
3590 5575 4.779993 ATGACAAAGGAACCCTAGGATC 57.220 45.455 11.48 8.20 31.13 3.36
3742 5730 1.686052 GAGATCAGCTTCAGTCCGGAT 59.314 52.381 7.81 0.00 0.00 4.18
3993 5981 8.611654 AAATATGCAGTTCTTCATTTGCTTTT 57.388 26.923 0.00 0.00 37.45 2.27
4116 6107 2.702592 ACAACACCCTCACGAAGAAA 57.297 45.000 0.00 0.00 0.00 2.52
4157 6150 3.261643 TCAGAATGTTGGAGCTGAGCTTA 59.738 43.478 9.00 0.00 36.65 3.09
4681 8055 6.780522 ACCATGGGTGTAATTAAACTCTTTGT 59.219 34.615 18.09 0.53 32.98 2.83
4682 8056 7.227049 ACCATGGGTGTAATTAAACTCTTTG 57.773 36.000 18.09 5.04 32.98 2.77
4683 8057 7.945664 TGTACCATGGGTGTAATTAAACTCTTT 59.054 33.333 18.09 0.00 36.19 2.52
4684 8058 7.463431 TGTACCATGGGTGTAATTAAACTCTT 58.537 34.615 18.09 0.00 36.19 2.85
4685 8059 7.023171 TGTACCATGGGTGTAATTAAACTCT 57.977 36.000 18.09 0.00 36.19 3.24
4715 8089 8.673711 GTGTATGTATCTGTTAAATTGCTCCAA 58.326 33.333 0.00 0.00 0.00 3.53
4734 8108 4.086457 GGGGGTTTCAAGATTGTGTATGT 58.914 43.478 0.00 0.00 0.00 2.29
4757 8131 8.773216 AGATAGCAAGTATTTCCCTTACTTCTT 58.227 33.333 0.00 0.00 37.71 2.52
4777 8151 6.337356 GGCCTTTCATCAGACTATAGATAGC 58.663 44.000 6.78 0.00 33.68 2.97
4852 8292 5.489792 AGGTTACAAGCAGAGATTGAGAA 57.510 39.130 1.68 0.00 32.89 2.87
5028 9325 7.042590 CGTTAAGGTCACCGCATTGTATAATTA 60.043 37.037 0.00 0.00 0.00 1.40
5068 9365 4.616181 AATTCCTATCTTTCGGCGTTTG 57.384 40.909 6.85 0.00 0.00 2.93
5069 9366 5.878669 ACTTAATTCCTATCTTTCGGCGTTT 59.121 36.000 6.85 0.00 0.00 3.60
5070 9367 5.293569 CACTTAATTCCTATCTTTCGGCGTT 59.706 40.000 6.85 0.00 0.00 4.84
5133 9430 4.830826 TCTGTCTACTATGCGGTATGTG 57.169 45.455 0.00 0.00 0.00 3.21
5267 9576 6.316140 AGTCGCTGAAATTTATGTGCTTCATA 59.684 34.615 0.00 0.00 37.91 2.15
5346 9655 8.765517 GGGCTTAGTTTAGCAACCCTATATATA 58.234 37.037 0.00 0.00 43.02 0.86
5347 9656 7.580882 CGGGCTTAGTTTAGCAACCCTATATAT 60.581 40.741 0.00 0.00 43.02 0.86
5348 9657 6.295462 CGGGCTTAGTTTAGCAACCCTATATA 60.295 42.308 0.00 0.00 43.02 0.86
5349 9658 5.512576 CGGGCTTAGTTTAGCAACCCTATAT 60.513 44.000 0.00 0.00 43.02 0.86
5350 9659 4.202284 CGGGCTTAGTTTAGCAACCCTATA 60.202 45.833 0.00 0.00 43.02 1.31
5351 9660 3.433173 CGGGCTTAGTTTAGCAACCCTAT 60.433 47.826 0.00 0.00 43.02 2.57
5352 9661 2.093341 CGGGCTTAGTTTAGCAACCCTA 60.093 50.000 0.00 0.00 43.02 3.53
5353 9662 1.339727 CGGGCTTAGTTTAGCAACCCT 60.340 52.381 0.00 0.00 43.02 4.34
5354 9663 1.092348 CGGGCTTAGTTTAGCAACCC 58.908 55.000 0.00 0.00 43.02 4.11
5355 9664 2.007608 CTCGGGCTTAGTTTAGCAACC 58.992 52.381 0.00 0.00 43.02 3.77
5356 9665 1.397343 GCTCGGGCTTAGTTTAGCAAC 59.603 52.381 0.00 0.00 43.02 4.17
5357 9666 1.734163 GCTCGGGCTTAGTTTAGCAA 58.266 50.000 0.00 0.00 43.02 3.91
5358 9667 0.459585 CGCTCGGGCTTAGTTTAGCA 60.460 55.000 5.36 0.00 43.02 3.49
5359 9668 1.763200 GCGCTCGGGCTTAGTTTAGC 61.763 60.000 5.36 0.00 40.48 3.09
5360 9669 0.459585 TGCGCTCGGGCTTAGTTTAG 60.460 55.000 9.73 0.00 36.09 1.85
5361 9670 0.177141 ATGCGCTCGGGCTTAGTTTA 59.823 50.000 9.73 0.00 36.09 2.01
5362 9671 0.177141 TATGCGCTCGGGCTTAGTTT 59.823 50.000 9.73 0.00 36.09 2.66
5363 9672 0.393077 ATATGCGCTCGGGCTTAGTT 59.607 50.000 9.73 0.00 36.09 2.24
5364 9673 0.393077 AATATGCGCTCGGGCTTAGT 59.607 50.000 9.73 2.30 36.09 2.24
5365 9674 1.461127 GAAATATGCGCTCGGGCTTAG 59.539 52.381 9.73 0.00 36.09 2.18
5366 9675 1.508632 GAAATATGCGCTCGGGCTTA 58.491 50.000 9.73 5.87 36.09 3.09
5367 9676 1.166531 GGAAATATGCGCTCGGGCTT 61.167 55.000 9.73 0.00 36.09 4.35
5368 9677 1.598130 GGAAATATGCGCTCGGGCT 60.598 57.895 9.73 0.00 36.09 5.19
5369 9678 0.320421 TAGGAAATATGCGCTCGGGC 60.320 55.000 9.73 0.00 0.00 6.13
5370 9679 2.386661 ATAGGAAATATGCGCTCGGG 57.613 50.000 9.73 0.00 0.00 5.14
5371 9680 3.369147 CAGAATAGGAAATATGCGCTCGG 59.631 47.826 9.73 0.00 0.00 4.63
5372 9681 3.181526 GCAGAATAGGAAATATGCGCTCG 60.182 47.826 9.73 0.00 0.00 5.03
5373 9682 4.333633 GCAGAATAGGAAATATGCGCTC 57.666 45.455 9.73 0.00 0.00 5.03
5377 9686 3.126000 GGAGCGCAGAATAGGAAATATGC 59.874 47.826 11.47 0.00 0.00 3.14
5378 9687 3.369147 CGGAGCGCAGAATAGGAAATATG 59.631 47.826 11.47 0.00 0.00 1.78
5379 9688 3.589988 CGGAGCGCAGAATAGGAAATAT 58.410 45.455 11.47 0.00 0.00 1.28
5380 9689 2.288825 CCGGAGCGCAGAATAGGAAATA 60.289 50.000 11.47 0.00 0.00 1.40
5381 9690 1.541233 CCGGAGCGCAGAATAGGAAAT 60.541 52.381 11.47 0.00 0.00 2.17
5382 9691 0.179084 CCGGAGCGCAGAATAGGAAA 60.179 55.000 11.47 0.00 0.00 3.13
5383 9692 1.327690 ACCGGAGCGCAGAATAGGAA 61.328 55.000 9.46 0.00 0.00 3.36
5384 9693 1.735376 GACCGGAGCGCAGAATAGGA 61.735 60.000 9.46 0.00 0.00 2.94
5385 9694 1.300233 GACCGGAGCGCAGAATAGG 60.300 63.158 9.46 6.49 0.00 2.57
5386 9695 0.952280 TAGACCGGAGCGCAGAATAG 59.048 55.000 9.46 0.00 0.00 1.73
5387 9696 1.066605 GTTAGACCGGAGCGCAGAATA 59.933 52.381 9.46 0.00 0.00 1.75
5388 9697 0.179108 GTTAGACCGGAGCGCAGAAT 60.179 55.000 9.46 0.00 0.00 2.40
5389 9698 1.214589 GTTAGACCGGAGCGCAGAA 59.785 57.895 9.46 0.00 0.00 3.02
5390 9699 1.529152 TTGTTAGACCGGAGCGCAGA 61.529 55.000 9.46 0.00 0.00 4.26
5391 9700 1.080093 TTGTTAGACCGGAGCGCAG 60.080 57.895 9.46 0.00 0.00 5.18
5392 9701 1.373748 GTTGTTAGACCGGAGCGCA 60.374 57.895 9.46 0.00 0.00 6.09
5393 9702 2.442188 CGTTGTTAGACCGGAGCGC 61.442 63.158 9.46 0.00 0.00 5.92
5394 9703 2.442188 GCGTTGTTAGACCGGAGCG 61.442 63.158 9.46 0.00 0.00 5.03
5395 9704 2.442188 CGCGTTGTTAGACCGGAGC 61.442 63.158 9.46 0.00 0.00 4.70
5396 9705 2.442188 GCGCGTTGTTAGACCGGAG 61.442 63.158 9.46 0.00 0.00 4.63
5397 9706 2.431260 GCGCGTTGTTAGACCGGA 60.431 61.111 9.46 0.00 0.00 5.14
5398 9707 2.735478 TGCGCGTTGTTAGACCGG 60.735 61.111 8.43 0.00 0.00 5.28
5399 9708 2.468532 GTGCGCGTTGTTAGACCG 59.531 61.111 8.43 0.00 0.00 4.79
5400 9709 2.674084 GGGTGCGCGTTGTTAGACC 61.674 63.158 8.43 1.10 0.00 3.85
5401 9710 1.500512 TTGGGTGCGCGTTGTTAGAC 61.501 55.000 8.43 0.00 0.00 2.59
5402 9711 1.225376 CTTGGGTGCGCGTTGTTAGA 61.225 55.000 8.43 0.00 0.00 2.10
5403 9712 1.206578 CTTGGGTGCGCGTTGTTAG 59.793 57.895 8.43 0.00 0.00 2.34
5404 9713 2.255172 CCTTGGGTGCGCGTTGTTA 61.255 57.895 8.43 0.00 0.00 2.41
5405 9714 3.591835 CCTTGGGTGCGCGTTGTT 61.592 61.111 8.43 0.00 0.00 2.83
5406 9715 4.555709 TCCTTGGGTGCGCGTTGT 62.556 61.111 8.43 0.00 0.00 3.32
5407 9716 3.726517 CTCCTTGGGTGCGCGTTG 61.727 66.667 8.43 0.00 0.00 4.10
5412 9721 2.587322 TTATCGGCTCCTTGGGTGCG 62.587 60.000 4.85 1.80 42.37 5.34
5413 9722 0.393808 TTTATCGGCTCCTTGGGTGC 60.394 55.000 2.44 2.44 40.94 5.01
5414 9723 1.743394 GTTTTATCGGCTCCTTGGGTG 59.257 52.381 0.00 0.00 0.00 4.61
5415 9724 1.353022 TGTTTTATCGGCTCCTTGGGT 59.647 47.619 0.00 0.00 0.00 4.51
5416 9725 2.017049 CTGTTTTATCGGCTCCTTGGG 58.983 52.381 0.00 0.00 0.00 4.12
5417 9726 1.401905 GCTGTTTTATCGGCTCCTTGG 59.598 52.381 0.00 0.00 36.83 3.61
5418 9727 1.062587 CGCTGTTTTATCGGCTCCTTG 59.937 52.381 0.00 0.00 37.54 3.61
5419 9728 1.369625 CGCTGTTTTATCGGCTCCTT 58.630 50.000 0.00 0.00 37.54 3.36
5420 9729 1.090052 GCGCTGTTTTATCGGCTCCT 61.090 55.000 0.00 0.00 37.54 3.69
5421 9730 1.352056 GCGCTGTTTTATCGGCTCC 59.648 57.895 0.00 0.00 37.54 4.70
5422 9731 0.247695 GTGCGCTGTTTTATCGGCTC 60.248 55.000 9.73 0.00 37.54 4.70
5423 9732 0.953471 TGTGCGCTGTTTTATCGGCT 60.953 50.000 9.73 0.00 37.54 5.52
5424 9733 0.793104 GTGTGCGCTGTTTTATCGGC 60.793 55.000 9.73 0.00 36.47 5.54
5425 9734 0.515127 TGTGTGCGCTGTTTTATCGG 59.485 50.000 9.73 0.00 0.00 4.18
5426 9735 1.591248 GTGTGTGCGCTGTTTTATCG 58.409 50.000 9.73 0.00 0.00 2.92
5427 9736 1.265635 TGGTGTGTGCGCTGTTTTATC 59.734 47.619 9.73 0.00 0.00 1.75
5428 9737 1.313772 TGGTGTGTGCGCTGTTTTAT 58.686 45.000 9.73 0.00 0.00 1.40
5429 9738 1.001924 CATGGTGTGTGCGCTGTTTTA 60.002 47.619 9.73 0.00 0.00 1.52
5430 9739 0.248990 CATGGTGTGTGCGCTGTTTT 60.249 50.000 9.73 0.00 0.00 2.43
5431 9740 1.359833 CATGGTGTGTGCGCTGTTT 59.640 52.632 9.73 0.00 0.00 2.83
5432 9741 2.554636 CCATGGTGTGTGCGCTGTT 61.555 57.895 9.73 0.00 0.00 3.16
5433 9742 2.390306 TACCATGGTGTGTGCGCTGT 62.390 55.000 28.17 0.00 0.00 4.40
5434 9743 1.670730 TACCATGGTGTGTGCGCTG 60.671 57.895 28.17 0.00 0.00 5.18
5435 9744 1.671054 GTACCATGGTGTGTGCGCT 60.671 57.895 28.17 0.00 0.00 5.92
5436 9745 1.911293 CTGTACCATGGTGTGTGCGC 61.911 60.000 28.17 0.00 0.00 6.09
5437 9746 1.911293 GCTGTACCATGGTGTGTGCG 61.911 60.000 28.17 10.35 0.00 5.34
5438 9747 1.586154 GGCTGTACCATGGTGTGTGC 61.586 60.000 28.17 22.64 38.86 4.57
5439 9748 1.298157 CGGCTGTACCATGGTGTGTG 61.298 60.000 28.17 14.90 39.03 3.82
5440 9749 1.003839 CGGCTGTACCATGGTGTGT 60.004 57.895 28.17 2.21 39.03 3.72
5441 9750 0.321210 TTCGGCTGTACCATGGTGTG 60.321 55.000 28.17 16.97 39.03 3.82
5442 9751 0.321298 GTTCGGCTGTACCATGGTGT 60.321 55.000 28.17 3.48 39.03 4.16
5443 9752 1.024579 GGTTCGGCTGTACCATGGTG 61.025 60.000 28.17 12.10 39.03 4.17
5444 9753 1.298667 GGTTCGGCTGTACCATGGT 59.701 57.895 23.55 23.55 39.03 3.55
5445 9754 0.744414 CTGGTTCGGCTGTACCATGG 60.744 60.000 22.74 11.19 43.58 3.66
5446 9755 1.369091 GCTGGTTCGGCTGTACCATG 61.369 60.000 22.74 17.12 43.58 3.66
5447 9756 1.078426 GCTGGTTCGGCTGTACCAT 60.078 57.895 22.74 0.00 43.58 3.55
5448 9757 2.345991 GCTGGTTCGGCTGTACCA 59.654 61.111 21.41 21.41 42.55 3.25
5449 9758 2.813908 CGCTGGTTCGGCTGTACC 60.814 66.667 14.14 14.14 36.17 3.34
5450 9759 3.488090 GCGCTGGTTCGGCTGTAC 61.488 66.667 0.00 0.00 32.89 2.90
5451 9760 3.642778 GAGCGCTGGTTCGGCTGTA 62.643 63.158 18.48 0.00 37.10 2.74
5458 9767 4.021925 AGGTGGGAGCGCTGGTTC 62.022 66.667 18.48 0.00 0.00 3.62
5459 9768 4.335647 CAGGTGGGAGCGCTGGTT 62.336 66.667 18.48 0.00 0.00 3.67
5461 9770 4.020617 TTCAGGTGGGAGCGCTGG 62.021 66.667 18.48 0.00 0.00 4.85
5462 9771 2.743928 GTTCAGGTGGGAGCGCTG 60.744 66.667 18.48 0.00 0.00 5.18
5463 9772 4.379243 CGTTCAGGTGGGAGCGCT 62.379 66.667 11.27 11.27 34.86 5.92
5464 9773 2.775032 TTACGTTCAGGTGGGAGCGC 62.775 60.000 0.00 0.00 43.99 5.92
5465 9774 0.320073 TTTACGTTCAGGTGGGAGCG 60.320 55.000 0.00 0.00 45.37 5.03
5466 9775 1.154197 GTTTACGTTCAGGTGGGAGC 58.846 55.000 0.00 0.00 0.00 4.70
5467 9776 1.425412 CGTTTACGTTCAGGTGGGAG 58.575 55.000 0.00 0.00 34.11 4.30
5468 9777 0.600782 GCGTTTACGTTCAGGTGGGA 60.601 55.000 0.00 0.00 42.22 4.37
5469 9778 1.571215 GGCGTTTACGTTCAGGTGGG 61.571 60.000 0.00 0.00 42.22 4.61
5470 9779 0.601841 AGGCGTTTACGTTCAGGTGG 60.602 55.000 0.00 0.00 42.22 4.61
5471 9780 0.788391 GAGGCGTTTACGTTCAGGTG 59.212 55.000 0.00 0.00 42.22 4.00
5472 9781 0.390124 TGAGGCGTTTACGTTCAGGT 59.610 50.000 0.00 0.00 42.22 4.00
5473 9782 0.788391 GTGAGGCGTTTACGTTCAGG 59.212 55.000 0.00 0.00 42.22 3.86
5474 9783 1.779569 AGTGAGGCGTTTACGTTCAG 58.220 50.000 0.00 0.00 42.22 3.02
5475 9784 3.367992 TTAGTGAGGCGTTTACGTTCA 57.632 42.857 0.00 5.95 42.22 3.18
5476 9785 3.490526 TGTTTAGTGAGGCGTTTACGTTC 59.509 43.478 0.00 3.56 42.22 3.95
5477 9786 3.456280 TGTTTAGTGAGGCGTTTACGTT 58.544 40.909 0.00 0.00 42.22 3.99
5478 9787 3.096489 TGTTTAGTGAGGCGTTTACGT 57.904 42.857 4.05 0.00 42.22 3.57
5479 9788 4.860907 ACTATGTTTAGTGAGGCGTTTACG 59.139 41.667 0.00 0.00 37.28 3.18
5480 9789 7.201470 GGTTACTATGTTTAGTGAGGCGTTTAC 60.201 40.741 0.00 0.00 39.08 2.01
5481 9790 6.813152 GGTTACTATGTTTAGTGAGGCGTTTA 59.187 38.462 0.00 0.00 39.08 2.01
5482 9791 5.640783 GGTTACTATGTTTAGTGAGGCGTTT 59.359 40.000 0.00 0.00 39.08 3.60
5483 9792 5.173664 GGTTACTATGTTTAGTGAGGCGTT 58.826 41.667 0.00 0.00 39.08 4.84
5484 9793 4.221262 TGGTTACTATGTTTAGTGAGGCGT 59.779 41.667 0.00 0.00 39.08 5.68
5485 9794 4.565564 GTGGTTACTATGTTTAGTGAGGCG 59.434 45.833 0.00 0.00 39.08 5.52
5486 9795 4.874396 GGTGGTTACTATGTTTAGTGAGGC 59.126 45.833 0.00 0.00 39.08 4.70
5487 9796 6.295719 AGGTGGTTACTATGTTTAGTGAGG 57.704 41.667 0.00 0.00 39.08 3.86
5488 9797 6.070995 TGGAGGTGGTTACTATGTTTAGTGAG 60.071 42.308 0.00 0.00 39.08 3.51
5489 9798 5.781306 TGGAGGTGGTTACTATGTTTAGTGA 59.219 40.000 0.00 0.00 39.08 3.41
5490 9799 6.045072 TGGAGGTGGTTACTATGTTTAGTG 57.955 41.667 0.00 0.00 39.08 2.74
5491 9800 6.126854 GGATGGAGGTGGTTACTATGTTTAGT 60.127 42.308 0.00 0.00 41.57 2.24
5492 9801 6.126883 TGGATGGAGGTGGTTACTATGTTTAG 60.127 42.308 0.00 0.00 0.00 1.85
5493 9802 5.727279 TGGATGGAGGTGGTTACTATGTTTA 59.273 40.000 0.00 0.00 0.00 2.01
5494 9803 4.538490 TGGATGGAGGTGGTTACTATGTTT 59.462 41.667 0.00 0.00 0.00 2.83
5495 9804 4.108570 TGGATGGAGGTGGTTACTATGTT 58.891 43.478 0.00 0.00 0.00 2.71
5496 9805 3.731431 TGGATGGAGGTGGTTACTATGT 58.269 45.455 0.00 0.00 0.00 2.29
5497 9806 4.982241 ATGGATGGAGGTGGTTACTATG 57.018 45.455 0.00 0.00 0.00 2.23
5498 9807 5.994416 AAATGGATGGAGGTGGTTACTAT 57.006 39.130 0.00 0.00 0.00 2.12
5499 9808 5.968167 AGTAAATGGATGGAGGTGGTTACTA 59.032 40.000 0.00 0.00 30.77 1.82
5500 9809 4.788617 AGTAAATGGATGGAGGTGGTTACT 59.211 41.667 0.00 0.00 0.00 2.24
5501 9810 5.112129 AGTAAATGGATGGAGGTGGTTAC 57.888 43.478 0.00 0.00 0.00 2.50
5502 9811 5.131475 GGTAGTAAATGGATGGAGGTGGTTA 59.869 44.000 0.00 0.00 0.00 2.85
5503 9812 4.079958 GGTAGTAAATGGATGGAGGTGGTT 60.080 45.833 0.00 0.00 0.00 3.67
5504 9813 3.458487 GGTAGTAAATGGATGGAGGTGGT 59.542 47.826 0.00 0.00 0.00 4.16
5505 9814 3.458118 TGGTAGTAAATGGATGGAGGTGG 59.542 47.826 0.00 0.00 0.00 4.61
5506 9815 4.164221 ACTGGTAGTAAATGGATGGAGGTG 59.836 45.833 0.00 0.00 0.00 4.00
5507 9816 4.164221 CACTGGTAGTAAATGGATGGAGGT 59.836 45.833 0.00 0.00 0.00 3.85
5508 9817 4.444876 CCACTGGTAGTAAATGGATGGAGG 60.445 50.000 0.00 0.00 31.69 4.30
5509 9818 4.444876 CCCACTGGTAGTAAATGGATGGAG 60.445 50.000 0.00 0.00 31.69 3.86
5510 9819 3.458118 CCCACTGGTAGTAAATGGATGGA 59.542 47.826 0.00 0.00 31.69 3.41
5511 9820 3.458118 TCCCACTGGTAGTAAATGGATGG 59.542 47.826 0.00 0.00 31.69 3.51
5512 9821 4.771114 TCCCACTGGTAGTAAATGGATG 57.229 45.455 0.00 0.00 31.69 3.51
5513 9822 5.789574 TTTCCCACTGGTAGTAAATGGAT 57.210 39.130 0.00 0.00 31.69 3.41
5514 9823 5.251932 TGATTTCCCACTGGTAGTAAATGGA 59.748 40.000 0.00 0.00 31.69 3.41
5515 9824 5.505780 TGATTTCCCACTGGTAGTAAATGG 58.494 41.667 0.00 0.00 0.00 3.16
5516 9825 7.416664 CCATTGATTTCCCACTGGTAGTAAATG 60.417 40.741 0.00 0.00 33.66 2.32
5517 9826 6.607198 CCATTGATTTCCCACTGGTAGTAAAT 59.393 38.462 0.00 0.00 33.66 1.40
5518 9827 5.949354 CCATTGATTTCCCACTGGTAGTAAA 59.051 40.000 0.00 0.00 33.66 2.01
5519 9828 5.014755 ACCATTGATTTCCCACTGGTAGTAA 59.985 40.000 4.44 0.00 44.83 2.24
5520 9829 4.538490 ACCATTGATTTCCCACTGGTAGTA 59.462 41.667 4.44 0.00 44.83 1.82
5521 9830 3.333680 ACCATTGATTTCCCACTGGTAGT 59.666 43.478 4.44 0.00 44.83 2.73
5522 9831 3.968265 ACCATTGATTTCCCACTGGTAG 58.032 45.455 4.44 0.00 44.83 3.18
5523 9832 5.522315 TTACCATTGATTTCCCACTGGTA 57.478 39.130 8.45 8.45 44.83 3.25
5524 9833 2.999185 ACCATTGATTTCCCACTGGT 57.001 45.000 0.00 0.00 42.81 4.00
5525 9834 5.736951 TTTTACCATTGATTTCCCACTGG 57.263 39.130 0.00 0.00 41.15 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.