Multiple sequence alignment - TraesCS1B01G054000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G054000 chr1B 100.000 2555 0 0 1 2555 34731797 34729243 0.000000e+00 4719.0
1 TraesCS1B01G054000 chr1B 94.737 532 27 1 462 992 511975898 511976429 0.000000e+00 826.0
2 TraesCS1B01G054000 chr1B 94.151 530 30 1 460 989 522271540 522272068 0.000000e+00 806.0
3 TraesCS1B01G054000 chr1B 93.762 529 32 1 462 990 264899070 264898543 0.000000e+00 793.0
4 TraesCS1B01G054000 chr1B 97.222 108 3 0 2122 2229 34729625 34729518 1.560000e-42 183.0
5 TraesCS1B01G054000 chr1B 97.222 108 3 0 2173 2280 34729676 34729569 1.560000e-42 183.0
6 TraesCS1B01G054000 chr1B 94.737 57 3 0 2122 2178 34729574 34729518 3.500000e-14 89.8
7 TraesCS1B01G054000 chr1B 94.737 57 3 0 2224 2280 34729676 34729620 3.500000e-14 89.8
8 TraesCS1B01G054000 chr5D 90.441 1203 93 13 989 2178 516817128 516818321 0.000000e+00 1565.0
9 TraesCS1B01G054000 chr5D 88.755 249 28 0 213 461 516816888 516817136 3.190000e-79 305.0
10 TraesCS1B01G054000 chr5D 83.774 265 36 5 2224 2481 516818265 516818529 7.060000e-61 244.0
11 TraesCS1B01G054000 chr5D 89.474 57 6 0 2173 2229 516818265 516818321 3.530000e-09 73.1
12 TraesCS1B01G054000 chr5A 88.871 1249 117 19 989 2224 644134348 644135587 0.000000e+00 1517.0
13 TraesCS1B01G054000 chr5A 87.698 252 31 0 210 461 644134105 644134356 6.910000e-76 294.0
14 TraesCS1B01G054000 chr5A 84.906 265 33 2 2224 2481 644135536 644135800 7.010000e-66 261.0
15 TraesCS1B01G054000 chr5A 91.667 144 9 1 29 172 598907232 598907372 2.010000e-46 196.0
16 TraesCS1B01G054000 chr5B 87.766 1267 120 26 989 2228 649402445 649403703 0.000000e+00 1448.0
17 TraesCS1B01G054000 chr5B 94.697 528 28 0 462 989 400940635 400941162 0.000000e+00 821.0
18 TraesCS1B01G054000 chr5B 86.508 252 34 0 210 461 649402202 649402453 6.960000e-71 278.0
19 TraesCS1B01G054000 chr5B 83.774 265 36 2 2224 2481 649403648 649403912 7.060000e-61 244.0
20 TraesCS1B01G054000 chr5B 96.512 86 2 1 2471 2555 710686229 710686314 9.530000e-30 141.0
21 TraesCS1B01G054000 chr5B 94.253 87 4 1 2470 2555 381352019 381351933 5.740000e-27 132.0
22 TraesCS1B01G054000 chr4B 94.539 531 28 1 461 991 57252084 57252613 0.000000e+00 819.0
23 TraesCS1B01G054000 chr3B 95.000 520 26 0 462 981 672907296 672906777 0.000000e+00 817.0
24 TraesCS1B01G054000 chr3B 93.762 529 33 0 462 990 203347708 203347180 0.000000e+00 795.0
25 TraesCS1B01G054000 chr3B 86.364 154 16 4 26 178 442318370 442318519 2.030000e-36 163.0
26 TraesCS1B01G054000 chr3B 86.577 149 16 4 31 178 441795706 441795851 7.320000e-36 161.0
27 TraesCS1B01G054000 chr3B 92.683 82 4 2 2475 2555 50155618 50155698 1.610000e-22 117.0
28 TraesCS1B01G054000 chr6B 93.974 531 31 1 462 992 84759224 84758695 0.000000e+00 802.0
29 TraesCS1B01G054000 chr6B 93.762 529 31 2 461 989 53405722 53405196 0.000000e+00 793.0
30 TraesCS1B01G054000 chr6B 92.683 82 2 2 2475 2555 143463739 143463661 5.780000e-22 115.0
31 TraesCS1B01G054000 chrUn 92.771 83 5 1 2474 2555 31726477 31726559 4.470000e-23 119.0
32 TraesCS1B01G054000 chr6D 94.667 75 4 0 2481 2555 464681357 464681283 1.610000e-22 117.0
33 TraesCS1B01G054000 chr1D 94.667 75 3 1 2481 2554 13857073 13857147 5.780000e-22 115.0
34 TraesCS1B01G054000 chr1D 94.521 73 4 0 2483 2555 14005272 14005344 2.080000e-21 113.0
35 TraesCS1B01G054000 chr1D 93.421 76 4 1 2481 2555 13890348 13890423 7.470000e-21 111.0
36 TraesCS1B01G054000 chr2B 100.000 29 0 0 180 208 65471234 65471206 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G054000 chr1B 34729243 34731797 2554 True 1052.920000 4719 96.783600 1 2555 5 chr1B.!!$R2 2554
1 TraesCS1B01G054000 chr1B 511975898 511976429 531 False 826.000000 826 94.737000 462 992 1 chr1B.!!$F1 530
2 TraesCS1B01G054000 chr1B 522271540 522272068 528 False 806.000000 806 94.151000 460 989 1 chr1B.!!$F2 529
3 TraesCS1B01G054000 chr1B 264898543 264899070 527 True 793.000000 793 93.762000 462 990 1 chr1B.!!$R1 528
4 TraesCS1B01G054000 chr5D 516816888 516818529 1641 False 546.775000 1565 88.111000 213 2481 4 chr5D.!!$F1 2268
5 TraesCS1B01G054000 chr5A 644134105 644135800 1695 False 690.666667 1517 87.158333 210 2481 3 chr5A.!!$F2 2271
6 TraesCS1B01G054000 chr5B 400940635 400941162 527 False 821.000000 821 94.697000 462 989 1 chr5B.!!$F1 527
7 TraesCS1B01G054000 chr5B 649402202 649403912 1710 False 656.666667 1448 86.016000 210 2481 3 chr5B.!!$F3 2271
8 TraesCS1B01G054000 chr4B 57252084 57252613 529 False 819.000000 819 94.539000 461 991 1 chr4B.!!$F1 530
9 TraesCS1B01G054000 chr3B 672906777 672907296 519 True 817.000000 817 95.000000 462 981 1 chr3B.!!$R2 519
10 TraesCS1B01G054000 chr3B 203347180 203347708 528 True 795.000000 795 93.762000 462 990 1 chr3B.!!$R1 528
11 TraesCS1B01G054000 chr6B 84758695 84759224 529 True 802.000000 802 93.974000 462 992 1 chr6B.!!$R2 530
12 TraesCS1B01G054000 chr6B 53405196 53405722 526 True 793.000000 793 93.762000 461 989 1 chr6B.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.033228 CGCTCTGGAATGCTAGGGAG 59.967 60.0 0.0 0.0 0.0 4.30 F
179 180 0.106335 CGCTCCCTAGACTCGTCCTA 59.894 60.0 0.0 0.0 0.0 2.94 F
457 458 0.179089 CAGAGAAGATCCGCACCCTG 60.179 60.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 1363 0.107459 GGAAGTCCCTCACTGCATCC 60.107 60.0 0.0 0.0 34.56 3.51 R
1393 1397 0.961753 CCTTTCAGGTTTGCCTCACC 59.038 55.0 0.0 0.0 44.97 4.02 R
2330 2365 0.036388 GTCGCTGACAATCCCTTGGA 60.036 55.0 4.2 0.0 36.64 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.117257 TGTGGTCTTTCCGACGTCA 58.883 52.632 17.16 0.00 43.79 4.35
19 20 0.677288 TGTGGTCTTTCCGACGTCAT 59.323 50.000 17.16 0.00 43.79 3.06
20 21 1.068474 GTGGTCTTTCCGACGTCATG 58.932 55.000 17.16 6.03 43.79 3.07
21 22 0.963225 TGGTCTTTCCGACGTCATGA 59.037 50.000 17.16 8.56 43.79 3.07
22 23 1.548719 TGGTCTTTCCGACGTCATGAT 59.451 47.619 17.16 0.00 43.79 2.45
23 24 2.194271 GGTCTTTCCGACGTCATGATC 58.806 52.381 17.16 0.73 43.79 2.92
24 25 2.159226 GGTCTTTCCGACGTCATGATCT 60.159 50.000 17.16 0.00 43.79 2.75
25 26 2.854777 GTCTTTCCGACGTCATGATCTG 59.145 50.000 17.16 5.09 32.04 2.90
26 27 2.492088 TCTTTCCGACGTCATGATCTGT 59.508 45.455 17.16 0.00 0.00 3.41
27 28 2.278026 TTCCGACGTCATGATCTGTG 57.722 50.000 17.16 0.00 0.00 3.66
28 29 0.455815 TCCGACGTCATGATCTGTGG 59.544 55.000 17.16 5.18 0.00 4.17
29 30 0.528466 CCGACGTCATGATCTGTGGG 60.528 60.000 17.16 5.57 0.00 4.61
30 31 1.148157 CGACGTCATGATCTGTGGGC 61.148 60.000 17.16 0.00 0.00 5.36
31 32 0.176680 GACGTCATGATCTGTGGGCT 59.823 55.000 11.55 0.00 0.00 5.19
32 33 0.615331 ACGTCATGATCTGTGGGCTT 59.385 50.000 0.00 0.00 0.00 4.35
33 34 1.003580 ACGTCATGATCTGTGGGCTTT 59.996 47.619 0.00 0.00 0.00 3.51
34 35 1.667724 CGTCATGATCTGTGGGCTTTC 59.332 52.381 0.00 0.00 0.00 2.62
35 36 2.019984 GTCATGATCTGTGGGCTTTCC 58.980 52.381 0.00 0.00 0.00 3.13
36 37 1.918262 TCATGATCTGTGGGCTTTCCT 59.082 47.619 0.00 0.00 36.20 3.36
37 38 2.309755 TCATGATCTGTGGGCTTTCCTT 59.690 45.455 0.00 0.00 36.20 3.36
38 39 2.978156 TGATCTGTGGGCTTTCCTTT 57.022 45.000 0.00 0.00 36.20 3.11
39 40 3.243359 TGATCTGTGGGCTTTCCTTTT 57.757 42.857 0.00 0.00 36.20 2.27
40 41 3.575805 TGATCTGTGGGCTTTCCTTTTT 58.424 40.909 0.00 0.00 36.20 1.94
41 42 4.735369 TGATCTGTGGGCTTTCCTTTTTA 58.265 39.130 0.00 0.00 36.20 1.52
42 43 4.766891 TGATCTGTGGGCTTTCCTTTTTAG 59.233 41.667 0.00 0.00 36.20 1.85
43 44 4.178956 TCTGTGGGCTTTCCTTTTTAGT 57.821 40.909 0.00 0.00 36.20 2.24
44 45 3.888930 TCTGTGGGCTTTCCTTTTTAGTG 59.111 43.478 0.00 0.00 36.20 2.74
45 46 3.636764 CTGTGGGCTTTCCTTTTTAGTGT 59.363 43.478 0.00 0.00 36.20 3.55
46 47 3.383185 TGTGGGCTTTCCTTTTTAGTGTG 59.617 43.478 0.00 0.00 36.20 3.82
47 48 3.383505 GTGGGCTTTCCTTTTTAGTGTGT 59.616 43.478 0.00 0.00 36.20 3.72
48 49 4.581409 GTGGGCTTTCCTTTTTAGTGTGTA 59.419 41.667 0.00 0.00 36.20 2.90
49 50 4.825085 TGGGCTTTCCTTTTTAGTGTGTAG 59.175 41.667 0.00 0.00 36.20 2.74
50 51 4.825634 GGGCTTTCCTTTTTAGTGTGTAGT 59.174 41.667 0.00 0.00 0.00 2.73
51 52 5.301045 GGGCTTTCCTTTTTAGTGTGTAGTT 59.699 40.000 0.00 0.00 0.00 2.24
52 53 6.183360 GGGCTTTCCTTTTTAGTGTGTAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
53 54 6.695713 GGCTTTCCTTTTTAGTGTGTAGTTTG 59.304 38.462 0.00 0.00 0.00 2.93
54 55 7.255569 GCTTTCCTTTTTAGTGTGTAGTTTGT 58.744 34.615 0.00 0.00 0.00 2.83
55 56 7.758076 GCTTTCCTTTTTAGTGTGTAGTTTGTT 59.242 33.333 0.00 0.00 0.00 2.83
56 57 8.973835 TTTCCTTTTTAGTGTGTAGTTTGTTG 57.026 30.769 0.00 0.00 0.00 3.33
57 58 7.090953 TCCTTTTTAGTGTGTAGTTTGTTGG 57.909 36.000 0.00 0.00 0.00 3.77
58 59 6.095720 TCCTTTTTAGTGTGTAGTTTGTTGGG 59.904 38.462 0.00 0.00 0.00 4.12
59 60 6.127563 CCTTTTTAGTGTGTAGTTTGTTGGGT 60.128 38.462 0.00 0.00 0.00 4.51
60 61 6.837471 TTTTAGTGTGTAGTTTGTTGGGTT 57.163 33.333 0.00 0.00 0.00 4.11
61 62 5.821516 TTAGTGTGTAGTTTGTTGGGTTG 57.178 39.130 0.00 0.00 0.00 3.77
62 63 3.020984 AGTGTGTAGTTTGTTGGGTTGG 58.979 45.455 0.00 0.00 0.00 3.77
63 64 1.751924 TGTGTAGTTTGTTGGGTTGGC 59.248 47.619 0.00 0.00 0.00 4.52
64 65 1.025812 TGTAGTTTGTTGGGTTGGCG 58.974 50.000 0.00 0.00 0.00 5.69
65 66 0.318360 GTAGTTTGTTGGGTTGGCGC 60.318 55.000 0.00 0.00 0.00 6.53
66 67 0.752009 TAGTTTGTTGGGTTGGCGCA 60.752 50.000 10.83 0.00 35.68 6.09
67 68 1.591327 GTTTGTTGGGTTGGCGCAG 60.591 57.895 10.83 0.00 38.79 5.18
68 69 2.790791 TTTGTTGGGTTGGCGCAGG 61.791 57.895 10.83 0.00 38.79 4.85
69 70 4.514585 TGTTGGGTTGGCGCAGGT 62.515 61.111 10.83 0.00 38.79 4.00
70 71 3.670377 GTTGGGTTGGCGCAGGTC 61.670 66.667 10.83 0.00 38.79 3.85
71 72 3.884774 TTGGGTTGGCGCAGGTCT 61.885 61.111 10.83 0.00 38.79 3.85
72 73 4.641645 TGGGTTGGCGCAGGTCTG 62.642 66.667 10.83 0.00 33.46 3.51
73 74 4.643387 GGGTTGGCGCAGGTCTGT 62.643 66.667 10.83 0.00 0.00 3.41
74 75 2.345991 GGTTGGCGCAGGTCTGTA 59.654 61.111 10.83 0.00 0.00 2.74
75 76 2.033194 GGTTGGCGCAGGTCTGTAC 61.033 63.158 10.83 0.00 0.00 2.90
88 89 4.838904 GGTCTGTACCTGGTTATCCTTT 57.161 45.455 3.84 0.00 43.08 3.11
89 90 5.175388 GGTCTGTACCTGGTTATCCTTTT 57.825 43.478 3.84 0.00 43.08 2.27
90 91 5.183969 GGTCTGTACCTGGTTATCCTTTTC 58.816 45.833 3.84 0.00 43.08 2.29
91 92 5.045797 GGTCTGTACCTGGTTATCCTTTTCT 60.046 44.000 3.84 0.00 43.08 2.52
92 93 6.473758 GTCTGTACCTGGTTATCCTTTTCTT 58.526 40.000 3.84 0.00 34.23 2.52
93 94 6.371825 GTCTGTACCTGGTTATCCTTTTCTTG 59.628 42.308 3.84 0.00 34.23 3.02
94 95 5.566469 TGTACCTGGTTATCCTTTTCTTGG 58.434 41.667 3.84 0.00 34.23 3.61
95 96 5.311121 TGTACCTGGTTATCCTTTTCTTGGA 59.689 40.000 3.84 0.00 38.06 3.53
96 97 5.536497 ACCTGGTTATCCTTTTCTTGGAT 57.464 39.130 0.00 0.00 45.37 3.41
97 98 5.510430 ACCTGGTTATCCTTTTCTTGGATC 58.490 41.667 0.00 0.00 42.74 3.36
98 99 5.015178 ACCTGGTTATCCTTTTCTTGGATCA 59.985 40.000 0.00 0.00 42.74 2.92
99 100 5.591877 CCTGGTTATCCTTTTCTTGGATCAG 59.408 44.000 0.00 1.72 42.74 2.90
100 101 5.509498 TGGTTATCCTTTTCTTGGATCAGG 58.491 41.667 0.00 0.00 42.74 3.86
101 102 5.015178 TGGTTATCCTTTTCTTGGATCAGGT 59.985 40.000 0.00 0.00 42.74 4.00
102 103 5.358160 GGTTATCCTTTTCTTGGATCAGGTG 59.642 44.000 0.00 0.00 42.74 4.00
103 104 3.439857 TCCTTTTCTTGGATCAGGTGG 57.560 47.619 0.00 0.00 0.00 4.61
104 105 2.986019 TCCTTTTCTTGGATCAGGTGGA 59.014 45.455 0.00 0.00 0.00 4.02
105 106 3.084786 CCTTTTCTTGGATCAGGTGGAC 58.915 50.000 0.00 0.00 0.00 4.02
106 107 2.879103 TTTCTTGGATCAGGTGGACC 57.121 50.000 0.00 0.00 0.00 4.46
107 108 0.613260 TTCTTGGATCAGGTGGACCG 59.387 55.000 0.00 0.00 42.08 4.79
108 109 0.252057 TCTTGGATCAGGTGGACCGA 60.252 55.000 0.00 0.00 42.08 4.69
109 110 0.613260 CTTGGATCAGGTGGACCGAA 59.387 55.000 0.00 0.00 42.08 4.30
110 111 1.210478 CTTGGATCAGGTGGACCGAAT 59.790 52.381 0.00 0.00 42.08 3.34
111 112 0.830648 TGGATCAGGTGGACCGAATC 59.169 55.000 0.00 5.39 42.08 2.52
112 113 1.123928 GGATCAGGTGGACCGAATCT 58.876 55.000 11.13 0.00 42.08 2.40
113 114 1.486726 GGATCAGGTGGACCGAATCTT 59.513 52.381 11.13 0.00 42.08 2.40
114 115 2.092914 GGATCAGGTGGACCGAATCTTT 60.093 50.000 11.13 0.00 42.08 2.52
115 116 2.762535 TCAGGTGGACCGAATCTTTC 57.237 50.000 0.00 0.00 42.08 2.62
116 117 2.257207 TCAGGTGGACCGAATCTTTCT 58.743 47.619 0.00 0.00 42.08 2.52
117 118 2.637872 TCAGGTGGACCGAATCTTTCTT 59.362 45.455 0.00 0.00 42.08 2.52
118 119 3.072476 TCAGGTGGACCGAATCTTTCTTT 59.928 43.478 0.00 0.00 42.08 2.52
119 120 3.821033 CAGGTGGACCGAATCTTTCTTTT 59.179 43.478 0.00 0.00 42.08 2.27
120 121 4.278419 CAGGTGGACCGAATCTTTCTTTTT 59.722 41.667 0.00 0.00 42.08 1.94
121 122 4.519350 AGGTGGACCGAATCTTTCTTTTTC 59.481 41.667 0.00 0.00 42.08 2.29
122 123 4.519350 GGTGGACCGAATCTTTCTTTTTCT 59.481 41.667 0.00 0.00 0.00 2.52
123 124 5.452777 GTGGACCGAATCTTTCTTTTTCTG 58.547 41.667 0.00 0.00 0.00 3.02
124 125 4.518970 TGGACCGAATCTTTCTTTTTCTGG 59.481 41.667 0.00 0.00 0.00 3.86
125 126 4.519350 GGACCGAATCTTTCTTTTTCTGGT 59.481 41.667 0.00 0.00 32.73 4.00
126 127 5.438761 ACCGAATCTTTCTTTTTCTGGTG 57.561 39.130 0.00 0.00 30.60 4.17
127 128 4.278419 ACCGAATCTTTCTTTTTCTGGTGG 59.722 41.667 0.00 0.00 30.60 4.61
128 129 4.229876 CGAATCTTTCTTTTTCTGGTGGC 58.770 43.478 0.00 0.00 0.00 5.01
129 130 4.560128 GAATCTTTCTTTTTCTGGTGGCC 58.440 43.478 0.00 0.00 0.00 5.36
130 131 1.953686 TCTTTCTTTTTCTGGTGGCCG 59.046 47.619 0.00 0.00 0.00 6.13
131 132 0.387565 TTTCTTTTTCTGGTGGCCGC 59.612 50.000 8.12 8.12 0.00 6.53
132 133 1.460273 TTCTTTTTCTGGTGGCCGCC 61.460 55.000 29.34 29.34 0.00 6.13
133 134 3.267597 CTTTTTCTGGTGGCCGCCG 62.268 63.158 29.78 23.16 0.00 6.46
145 146 4.845580 CCGCCGCTCTGGAATGCT 62.846 66.667 0.00 0.00 42.00 3.79
146 147 2.106938 CGCCGCTCTGGAATGCTA 59.893 61.111 0.00 0.00 42.00 3.49
147 148 1.953138 CGCCGCTCTGGAATGCTAG 60.953 63.158 0.00 0.00 42.00 3.42
148 149 1.596477 GCCGCTCTGGAATGCTAGG 60.596 63.158 0.00 0.00 42.00 3.02
149 150 1.070445 CCGCTCTGGAATGCTAGGG 59.930 63.158 0.00 0.00 42.00 3.53
150 151 1.402896 CCGCTCTGGAATGCTAGGGA 61.403 60.000 0.00 0.00 42.00 4.20
151 152 0.033228 CGCTCTGGAATGCTAGGGAG 59.967 60.000 0.00 0.00 0.00 4.30
161 162 2.811101 CTAGGGAGCAGCTGACCG 59.189 66.667 20.43 3.82 0.00 4.79
162 163 3.438017 CTAGGGAGCAGCTGACCGC 62.438 68.421 20.43 15.64 39.57 5.68
171 172 2.809010 GCTGACCGCTCCCTAGAC 59.191 66.667 0.00 0.00 35.14 2.59
172 173 1.755008 GCTGACCGCTCCCTAGACT 60.755 63.158 0.00 0.00 35.14 3.24
173 174 1.730451 GCTGACCGCTCCCTAGACTC 61.730 65.000 0.00 0.00 35.14 3.36
174 175 1.440938 CTGACCGCTCCCTAGACTCG 61.441 65.000 0.00 0.00 0.00 4.18
175 176 1.451747 GACCGCTCCCTAGACTCGT 60.452 63.158 0.00 0.00 0.00 4.18
176 177 1.438562 GACCGCTCCCTAGACTCGTC 61.439 65.000 0.00 0.00 0.00 4.20
177 178 2.188161 CCGCTCCCTAGACTCGTCC 61.188 68.421 0.00 0.00 0.00 4.79
178 179 1.153127 CGCTCCCTAGACTCGTCCT 60.153 63.158 0.00 0.00 0.00 3.85
179 180 0.106335 CGCTCCCTAGACTCGTCCTA 59.894 60.000 0.00 0.00 0.00 2.94
180 181 1.270947 CGCTCCCTAGACTCGTCCTAT 60.271 57.143 0.00 0.00 0.00 2.57
181 182 2.028294 CGCTCCCTAGACTCGTCCTATA 60.028 54.545 0.00 0.00 0.00 1.31
182 183 3.369681 CGCTCCCTAGACTCGTCCTATAT 60.370 52.174 0.00 0.00 0.00 0.86
183 184 4.141981 CGCTCCCTAGACTCGTCCTATATA 60.142 50.000 0.00 0.00 0.00 0.86
184 185 5.453621 CGCTCCCTAGACTCGTCCTATATAT 60.454 48.000 0.00 0.00 0.00 0.86
185 186 6.239261 CGCTCCCTAGACTCGTCCTATATATA 60.239 46.154 0.00 0.00 0.00 0.86
186 187 7.507829 GCTCCCTAGACTCGTCCTATATATAA 58.492 42.308 0.00 0.00 0.00 0.98
187 188 8.158789 GCTCCCTAGACTCGTCCTATATATAAT 58.841 40.741 0.00 0.00 0.00 1.28
318 319 0.890683 GCCAAGGTTTGCATAGCAGT 59.109 50.000 9.03 0.00 40.61 4.40
328 329 0.528684 GCATAGCAGTCGTCCAGGAC 60.529 60.000 9.92 9.92 37.19 3.85
358 359 2.977178 CAGCTCTGCGACTCCCTT 59.023 61.111 0.00 0.00 0.00 3.95
382 383 0.389948 GCGACTCCGATGTCCTGTTT 60.390 55.000 0.00 0.00 38.22 2.83
392 393 0.254462 TGTCCTGTTTGTCCACTGCA 59.746 50.000 0.00 0.00 0.00 4.41
427 428 1.332144 AAGACATAAGCCGGGCCGTA 61.332 55.000 26.32 11.46 0.00 4.02
430 431 1.300697 CATAAGCCGGGCCGTAGAC 60.301 63.158 26.32 11.25 0.00 2.59
446 447 1.372997 GACGCAACGGCAGAGAAGA 60.373 57.895 0.00 0.00 41.24 2.87
448 449 0.737715 ACGCAACGGCAGAGAAGATC 60.738 55.000 0.00 0.00 41.24 2.75
449 450 1.424493 CGCAACGGCAGAGAAGATCC 61.424 60.000 0.00 0.00 41.24 3.36
452 453 1.888436 AACGGCAGAGAAGATCCGCA 61.888 55.000 0.00 0.00 45.23 5.69
453 454 1.880340 CGGCAGAGAAGATCCGCAC 60.880 63.158 0.00 0.00 35.20 5.34
454 455 1.522580 GGCAGAGAAGATCCGCACC 60.523 63.158 0.00 0.00 0.00 5.01
455 456 1.522580 GCAGAGAAGATCCGCACCC 60.523 63.158 0.00 0.00 0.00 4.61
456 457 1.965754 GCAGAGAAGATCCGCACCCT 61.966 60.000 0.00 0.00 0.00 4.34
457 458 0.179089 CAGAGAAGATCCGCACCCTG 60.179 60.000 0.00 0.00 0.00 4.45
458 459 1.144936 GAGAAGATCCGCACCCTGG 59.855 63.158 0.00 0.00 0.00 4.45
481 482 1.075659 GGGCTGGACCAAAAGCTCT 59.924 57.895 0.00 0.00 42.05 4.09
502 503 2.177038 CTCGCGAGCTTGACGACT 59.823 61.111 25.07 0.00 0.00 4.18
517 518 0.377554 CGACTGCTCGATAGTTCGGT 59.622 55.000 4.25 0.00 45.53 4.69
544 545 1.749153 GCTCGTAGCTCGCTTCTTAG 58.251 55.000 0.00 0.00 38.45 2.18
545 546 1.331138 GCTCGTAGCTCGCTTCTTAGA 59.669 52.381 0.00 0.00 38.45 2.10
709 712 5.624159 CACCTCAGCCCATCTATTTAATCA 58.376 41.667 0.00 0.00 0.00 2.57
786 789 7.921786 TTCATCTTGAAAACCATACCTACAG 57.078 36.000 0.00 0.00 32.71 2.74
793 796 8.877864 TTGAAAACCATACCTACAGATTCATT 57.122 30.769 0.00 0.00 0.00 2.57
875 879 1.058903 GCTTAAAACGAGCCGAGCG 59.941 57.895 1.50 0.00 34.06 5.03
935 939 1.521681 GCCGAGCCTTAACGAGCAT 60.522 57.895 0.00 0.00 0.00 3.79
993 997 3.048600 TCGTTAGTCTAGCCCTACCCTA 58.951 50.000 0.00 0.00 0.00 3.53
1044 1048 2.231478 AGGCGATAAGGTCACCGATATG 59.769 50.000 0.30 0.00 34.11 1.78
1056 1060 3.562639 CGATATGCGGAACCTCGAA 57.437 52.632 0.93 0.00 36.03 3.71
1062 1066 1.136774 GCGGAACCTCGAATTTGCC 59.863 57.895 0.00 0.00 0.00 4.52
1063 1067 1.582610 GCGGAACCTCGAATTTGCCA 61.583 55.000 0.00 0.00 0.00 4.92
1080 1084 2.361757 TGCCAATGTCAAGAAGGTGTTG 59.638 45.455 0.00 0.00 0.00 3.33
1139 1143 2.511373 GGCGTGCGACATGATCCA 60.511 61.111 0.00 0.00 0.00 3.41
1141 1145 2.528743 GCGTGCGACATGATCCAGG 61.529 63.158 0.00 0.00 0.00 4.45
1153 1157 2.290021 GATCCAGGGCAAGAAGGGGG 62.290 65.000 0.00 0.00 0.00 5.40
1158 1162 2.442830 GGCAAGAAGGGGGCCATC 60.443 66.667 4.39 0.00 46.92 3.51
1165 1169 3.268103 AAGGGGGCCATCGTGTCAC 62.268 63.158 4.39 0.00 0.00 3.67
1176 1180 3.106407 GTGTCACTGGCGAGCGTC 61.106 66.667 0.00 0.00 0.00 5.19
1214 1218 4.157120 GGGGCCTCACGCGTACAT 62.157 66.667 13.44 0.00 38.94 2.29
1216 1220 2.183300 GGCCTCACGCGTACATCA 59.817 61.111 13.44 0.00 38.94 3.07
1229 1233 2.411748 CGTACATCACGTCAAAGCATGT 59.588 45.455 0.00 0.00 45.82 3.21
1239 1243 2.209315 AAAGCATGTGGTGGTGGGC 61.209 57.895 0.00 0.00 38.84 5.36
1251 1255 2.360475 GTGGGCCTCACCAAGAGC 60.360 66.667 4.53 0.00 43.34 4.09
1258 1262 2.280797 TCACCAAGAGCGTGGCAC 60.281 61.111 7.79 7.79 43.00 5.01
1281 1285 2.281091 CTGGGGAGGCATGGCATT 59.719 61.111 22.64 0.39 0.00 3.56
1296 1300 1.017177 GCATTCGGGTGAACTGCGTA 61.017 55.000 0.00 0.00 36.81 4.42
1338 1342 0.813184 CGCTCTCCATGCCACATTTT 59.187 50.000 0.00 0.00 0.00 1.82
1359 1363 2.440599 CAGGGGGAACACAAGGGG 59.559 66.667 0.00 0.00 34.58 4.79
1392 1396 0.261696 ACTTCCTGGCCTTTGTTGGT 59.738 50.000 3.32 0.00 0.00 3.67
1393 1397 0.675633 CTTCCTGGCCTTTGTTGGTG 59.324 55.000 3.32 0.00 0.00 4.17
1444 1448 2.278857 CGAAGGATGTCGCCGAGG 60.279 66.667 0.00 0.00 33.66 4.63
1530 1542 5.192927 GGTGGATTTACATCTGTGAATGGA 58.807 41.667 5.20 0.00 34.88 3.41
1542 1554 3.295093 TGTGAATGGAAACCTGAAAGCA 58.705 40.909 0.00 0.00 0.00 3.91
1594 1606 8.121305 TGCATTTGTTACTTGGTATCTGAAAT 57.879 30.769 0.00 0.00 0.00 2.17
1609 1621 8.562892 GGTATCTGAAATCATTTGAGTACCATG 58.437 37.037 16.34 0.00 34.30 3.66
1737 1750 6.911250 TTACTCTGTTGAACCTGTGAGATA 57.089 37.500 10.16 0.71 0.00 1.98
1748 1761 3.383620 CTGTGAGATATGACAGGAGCC 57.616 52.381 0.00 0.00 36.69 4.70
1855 1873 7.072454 TGAGTTGGAAGCCCTATTAGTTCATAT 59.928 37.037 0.00 0.00 0.00 1.78
1856 1874 8.506196 AGTTGGAAGCCCTATTAGTTCATATA 57.494 34.615 0.00 0.00 0.00 0.86
1857 1875 8.598041 AGTTGGAAGCCCTATTAGTTCATATAG 58.402 37.037 0.00 0.00 0.00 1.31
1858 1876 7.496346 TGGAAGCCCTATTAGTTCATATAGG 57.504 40.000 0.00 0.00 41.96 2.57
1969 1996 2.273619 AGAAGAATCTTGAGGCAGGGT 58.726 47.619 0.00 0.00 29.15 4.34
2000 2027 7.169140 GGTACAACAAACACTGAATTCCATTTC 59.831 37.037 2.27 0.00 0.00 2.17
2039 2067 8.985315 AAAGGCTTCTATCAATGTATCATCAA 57.015 30.769 0.00 0.00 0.00 2.57
2090 2118 4.930405 CAGATATGCTGCTATCAGAAGTGG 59.070 45.833 16.14 0.00 42.95 4.00
2145 2177 4.565531 GCTGCTGCAATGAACCAC 57.434 55.556 11.11 0.00 39.41 4.16
2146 2178 1.962144 GCTGCTGCAATGAACCACT 59.038 52.632 11.11 0.00 39.41 4.00
2147 2179 1.167851 GCTGCTGCAATGAACCACTA 58.832 50.000 11.11 0.00 39.41 2.74
2148 2180 1.541147 GCTGCTGCAATGAACCACTAA 59.459 47.619 11.11 0.00 39.41 2.24
2152 2184 5.450965 GCTGCTGCAATGAACCACTAATAAT 60.451 40.000 11.11 0.00 39.41 1.28
2155 2187 8.236585 TGCTGCAATGAACCACTAATAATTAT 57.763 30.769 0.00 0.00 0.00 1.28
2156 2188 8.694540 TGCTGCAATGAACCACTAATAATTATT 58.305 29.630 14.86 14.86 0.00 1.40
2157 2189 9.533253 GCTGCAATGAACCACTAATAATTATTT 57.467 29.630 15.64 0.00 0.00 1.40
2242 2277 3.770263 GCATCTTTGCTGCTACAATGA 57.230 42.857 0.00 9.24 45.77 2.57
2243 2278 4.100707 GCATCTTTGCTGCTACAATGAA 57.899 40.909 0.00 0.00 45.77 2.57
2244 2279 3.855950 GCATCTTTGCTGCTACAATGAAC 59.144 43.478 0.00 4.82 45.77 3.18
2245 2280 4.418392 CATCTTTGCTGCTACAATGAACC 58.582 43.478 0.00 0.00 37.29 3.62
2246 2281 3.485394 TCTTTGCTGCTACAATGAACCA 58.515 40.909 0.00 0.00 32.59 3.67
2247 2282 3.253188 TCTTTGCTGCTACAATGAACCAC 59.747 43.478 0.00 0.00 32.59 4.16
2248 2283 2.566833 TGCTGCTACAATGAACCACT 57.433 45.000 0.00 0.00 0.00 4.00
2249 2284 3.694043 TGCTGCTACAATGAACCACTA 57.306 42.857 0.00 0.00 0.00 2.74
2250 2285 4.014569 TGCTGCTACAATGAACCACTAA 57.985 40.909 0.00 0.00 0.00 2.24
2251 2286 4.002982 TGCTGCTACAATGAACCACTAAG 58.997 43.478 0.00 0.00 0.00 2.18
2252 2287 4.253685 GCTGCTACAATGAACCACTAAGA 58.746 43.478 0.00 0.00 0.00 2.10
2253 2288 4.695455 GCTGCTACAATGAACCACTAAGAA 59.305 41.667 0.00 0.00 0.00 2.52
2254 2289 5.355350 GCTGCTACAATGAACCACTAAGAAT 59.645 40.000 0.00 0.00 0.00 2.40
2255 2290 6.127897 GCTGCTACAATGAACCACTAAGAATT 60.128 38.462 0.00 0.00 0.00 2.17
2256 2291 7.065803 GCTGCTACAATGAACCACTAAGAATTA 59.934 37.037 0.00 0.00 0.00 1.40
2257 2292 9.113838 CTGCTACAATGAACCACTAAGAATTAT 57.886 33.333 0.00 0.00 0.00 1.28
2258 2293 9.461312 TGCTACAATGAACCACTAAGAATTATT 57.539 29.630 0.00 0.00 0.00 1.40
2301 2336 2.470140 CGTTATCGTCAACGCAGTGTTC 60.470 50.000 10.39 0.00 45.00 3.18
2315 2350 2.476619 CAGTGTTCAGGCGAAGTTACAG 59.523 50.000 0.00 0.00 0.00 2.74
2330 2365 7.010923 GCGAAGTTACAGAATCTGAATGAGAAT 59.989 37.037 18.20 0.00 35.18 2.40
2370 2411 5.006165 CGACATCTTTGTTATCTTCAGAGCC 59.994 44.000 0.00 0.00 35.79 4.70
2388 2429 1.634702 CCGTTAGAAGCAGCTGAGAC 58.365 55.000 20.43 7.13 0.00 3.36
2392 2433 1.250840 TAGAAGCAGCTGAGACGGCA 61.251 55.000 20.43 0.00 38.37 5.69
2410 2451 1.144057 ATCACCCGAGTCCGAATGC 59.856 57.895 0.00 0.00 38.22 3.56
2423 2464 0.865111 CGAATGCGTTCTGTCCACAA 59.135 50.000 16.37 0.00 32.00 3.33
2432 2473 0.874390 TCTGTCCACAAATGCTTCGC 59.126 50.000 0.00 0.00 0.00 4.70
2433 2474 0.592637 CTGTCCACAAATGCTTCGCA 59.407 50.000 0.00 0.00 44.86 5.10
2443 2484 3.861341 TGCTTCGCATAAGGAGCTT 57.139 47.368 0.00 0.00 31.71 3.74
2445 2486 1.739466 TGCTTCGCATAAGGAGCTTTG 59.261 47.619 0.00 0.00 31.71 2.77
2446 2487 1.532713 GCTTCGCATAAGGAGCTTTGC 60.533 52.381 0.00 0.00 0.00 3.68
2457 2498 2.192608 GAGCTTTGCGCCACTTCAGG 62.193 60.000 4.18 0.00 40.39 3.86
2461 2502 0.036732 TTTGCGCCACTTCAGGATCT 59.963 50.000 4.18 0.00 0.00 2.75
2472 2513 1.048601 TCAGGATCTCCGTTATGCCC 58.951 55.000 0.00 0.00 42.08 5.36
2473 2514 0.035458 CAGGATCTCCGTTATGCCCC 59.965 60.000 0.00 0.00 42.08 5.80
2478 2519 2.437002 TCCGTTATGCCCCGCAAC 60.437 61.111 0.00 0.00 43.62 4.17
2479 2520 2.748251 CCGTTATGCCCCGCAACA 60.748 61.111 0.00 0.00 43.62 3.33
2480 2521 2.760159 CCGTTATGCCCCGCAACAG 61.760 63.158 0.00 0.00 43.62 3.16
2481 2522 2.489751 GTTATGCCCCGCAACAGC 59.510 61.111 0.00 0.00 43.62 4.40
2482 2523 2.753849 TTATGCCCCGCAACAGCC 60.754 61.111 0.00 0.00 43.62 4.85
2483 2524 4.813235 TATGCCCCGCAACAGCCC 62.813 66.667 0.00 0.00 43.62 5.19
2531 2572 3.810188 GGGCTCCCCAACCCTAGC 61.810 72.222 0.00 0.00 44.65 3.42
2533 2574 4.176752 GCTCCCCAACCCTAGCCG 62.177 72.222 0.00 0.00 0.00 5.52
2534 2575 4.176752 CTCCCCAACCCTAGCCGC 62.177 72.222 0.00 0.00 0.00 6.53
2537 2578 4.796495 CCCAACCCTAGCCGCCAC 62.796 72.222 0.00 0.00 0.00 5.01
2538 2579 3.717294 CCAACCCTAGCCGCCACT 61.717 66.667 0.00 0.00 0.00 4.00
2539 2580 2.436646 CAACCCTAGCCGCCACTG 60.437 66.667 0.00 0.00 0.00 3.66
2540 2581 3.717294 AACCCTAGCCGCCACTGG 61.717 66.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.677288 ATGACGTCGGAAAGACCACA 59.323 50.000 11.62 0.00 46.92 4.17
1 2 1.068474 CATGACGTCGGAAAGACCAC 58.932 55.000 11.62 0.00 46.92 4.16
2 3 0.963225 TCATGACGTCGGAAAGACCA 59.037 50.000 11.62 0.00 46.92 4.02
5 6 2.492088 ACAGATCATGACGTCGGAAAGA 59.508 45.455 11.62 4.48 0.00 2.52
6 7 2.600420 CACAGATCATGACGTCGGAAAG 59.400 50.000 11.62 7.85 0.00 2.62
7 8 2.606108 CACAGATCATGACGTCGGAAA 58.394 47.619 11.62 0.00 0.00 3.13
8 9 1.135112 CCACAGATCATGACGTCGGAA 60.135 52.381 11.62 0.00 0.00 4.30
9 10 0.455815 CCACAGATCATGACGTCGGA 59.544 55.000 11.62 11.55 0.00 4.55
10 11 0.528466 CCCACAGATCATGACGTCGG 60.528 60.000 11.62 5.86 0.00 4.79
11 12 1.148157 GCCCACAGATCATGACGTCG 61.148 60.000 11.62 0.00 0.00 5.12
12 13 0.176680 AGCCCACAGATCATGACGTC 59.823 55.000 9.11 9.11 0.00 4.34
13 14 0.615331 AAGCCCACAGATCATGACGT 59.385 50.000 0.00 0.00 0.00 4.34
14 15 1.667724 GAAAGCCCACAGATCATGACG 59.332 52.381 0.00 0.00 0.00 4.35
15 16 2.019984 GGAAAGCCCACAGATCATGAC 58.980 52.381 0.00 0.00 34.14 3.06
16 17 1.918262 AGGAAAGCCCACAGATCATGA 59.082 47.619 0.00 0.00 37.41 3.07
17 18 2.431954 AGGAAAGCCCACAGATCATG 57.568 50.000 0.00 0.00 37.41 3.07
18 19 3.463048 AAAGGAAAGCCCACAGATCAT 57.537 42.857 0.00 0.00 37.41 2.45
19 20 2.978156 AAAGGAAAGCCCACAGATCA 57.022 45.000 0.00 0.00 37.41 2.92
20 21 4.767409 ACTAAAAAGGAAAGCCCACAGATC 59.233 41.667 0.00 0.00 37.41 2.75
21 22 4.524328 CACTAAAAAGGAAAGCCCACAGAT 59.476 41.667 0.00 0.00 37.41 2.90
22 23 3.888930 CACTAAAAAGGAAAGCCCACAGA 59.111 43.478 0.00 0.00 37.41 3.41
23 24 3.636764 ACACTAAAAAGGAAAGCCCACAG 59.363 43.478 0.00 0.00 37.41 3.66
24 25 3.383185 CACACTAAAAAGGAAAGCCCACA 59.617 43.478 0.00 0.00 37.41 4.17
25 26 3.383505 ACACACTAAAAAGGAAAGCCCAC 59.616 43.478 0.00 0.00 37.41 4.61
26 27 3.637769 ACACACTAAAAAGGAAAGCCCA 58.362 40.909 0.00 0.00 37.41 5.36
27 28 4.825634 ACTACACACTAAAAAGGAAAGCCC 59.174 41.667 0.00 0.00 33.31 5.19
28 29 6.387041 AACTACACACTAAAAAGGAAAGCC 57.613 37.500 0.00 0.00 0.00 4.35
29 30 7.255569 ACAAACTACACACTAAAAAGGAAAGC 58.744 34.615 0.00 0.00 0.00 3.51
30 31 9.072294 CAACAAACTACACACTAAAAAGGAAAG 57.928 33.333 0.00 0.00 0.00 2.62
31 32 8.030106 CCAACAAACTACACACTAAAAAGGAAA 58.970 33.333 0.00 0.00 0.00 3.13
32 33 7.363094 CCCAACAAACTACACACTAAAAAGGAA 60.363 37.037 0.00 0.00 0.00 3.36
33 34 6.095720 CCCAACAAACTACACACTAAAAAGGA 59.904 38.462 0.00 0.00 0.00 3.36
34 35 6.127563 ACCCAACAAACTACACACTAAAAAGG 60.128 38.462 0.00 0.00 0.00 3.11
35 36 6.859017 ACCCAACAAACTACACACTAAAAAG 58.141 36.000 0.00 0.00 0.00 2.27
36 37 6.837471 ACCCAACAAACTACACACTAAAAA 57.163 33.333 0.00 0.00 0.00 1.94
37 38 6.350277 CCAACCCAACAAACTACACACTAAAA 60.350 38.462 0.00 0.00 0.00 1.52
38 39 5.125739 CCAACCCAACAAACTACACACTAAA 59.874 40.000 0.00 0.00 0.00 1.85
39 40 4.641094 CCAACCCAACAAACTACACACTAA 59.359 41.667 0.00 0.00 0.00 2.24
40 41 4.200874 CCAACCCAACAAACTACACACTA 58.799 43.478 0.00 0.00 0.00 2.74
41 42 3.020984 CCAACCCAACAAACTACACACT 58.979 45.455 0.00 0.00 0.00 3.55
42 43 2.480587 GCCAACCCAACAAACTACACAC 60.481 50.000 0.00 0.00 0.00 3.82
43 44 1.751924 GCCAACCCAACAAACTACACA 59.248 47.619 0.00 0.00 0.00 3.72
44 45 1.268845 CGCCAACCCAACAAACTACAC 60.269 52.381 0.00 0.00 0.00 2.90
45 46 1.025812 CGCCAACCCAACAAACTACA 58.974 50.000 0.00 0.00 0.00 2.74
46 47 0.318360 GCGCCAACCCAACAAACTAC 60.318 55.000 0.00 0.00 0.00 2.73
47 48 0.752009 TGCGCCAACCCAACAAACTA 60.752 50.000 4.18 0.00 0.00 2.24
48 49 2.015227 CTGCGCCAACCCAACAAACT 62.015 55.000 4.18 0.00 0.00 2.66
49 50 1.591327 CTGCGCCAACCCAACAAAC 60.591 57.895 4.18 0.00 0.00 2.93
50 51 2.790791 CCTGCGCCAACCCAACAAA 61.791 57.895 4.18 0.00 0.00 2.83
51 52 3.222855 CCTGCGCCAACCCAACAA 61.223 61.111 4.18 0.00 0.00 2.83
52 53 4.514585 ACCTGCGCCAACCCAACA 62.515 61.111 4.18 0.00 0.00 3.33
53 54 3.670377 GACCTGCGCCAACCCAAC 61.670 66.667 4.18 0.00 0.00 3.77
54 55 3.884774 AGACCTGCGCCAACCCAA 61.885 61.111 4.18 0.00 0.00 4.12
55 56 4.641645 CAGACCTGCGCCAACCCA 62.642 66.667 4.18 0.00 0.00 4.51
56 57 3.248446 TACAGACCTGCGCCAACCC 62.248 63.158 4.18 0.00 0.00 4.11
57 58 2.033194 GTACAGACCTGCGCCAACC 61.033 63.158 4.18 0.00 0.00 3.77
58 59 2.033194 GGTACAGACCTGCGCCAAC 61.033 63.158 4.18 0.00 43.16 3.77
59 60 2.345991 GGTACAGACCTGCGCCAA 59.654 61.111 4.18 0.00 43.16 4.52
68 69 6.051179 AGAAAAGGATAACCAGGTACAGAC 57.949 41.667 0.00 0.00 38.94 3.51
69 70 6.472887 CAAGAAAAGGATAACCAGGTACAGA 58.527 40.000 0.00 0.00 38.94 3.41
70 71 5.648092 CCAAGAAAAGGATAACCAGGTACAG 59.352 44.000 0.00 0.00 38.94 2.74
71 72 5.311121 TCCAAGAAAAGGATAACCAGGTACA 59.689 40.000 0.00 0.00 38.94 2.90
72 73 5.812286 TCCAAGAAAAGGATAACCAGGTAC 58.188 41.667 0.00 0.00 38.94 3.34
73 74 6.216662 TGATCCAAGAAAAGGATAACCAGGTA 59.783 38.462 0.00 0.00 45.65 3.08
74 75 5.015178 TGATCCAAGAAAAGGATAACCAGGT 59.985 40.000 0.00 0.00 45.65 4.00
75 76 5.509498 TGATCCAAGAAAAGGATAACCAGG 58.491 41.667 0.00 0.00 45.65 4.45
76 77 5.591877 CCTGATCCAAGAAAAGGATAACCAG 59.408 44.000 0.00 0.00 45.65 4.00
77 78 5.015178 ACCTGATCCAAGAAAAGGATAACCA 59.985 40.000 0.29 0.00 45.65 3.67
78 79 5.358160 CACCTGATCCAAGAAAAGGATAACC 59.642 44.000 0.29 0.00 45.65 2.85
79 80 5.358160 CCACCTGATCCAAGAAAAGGATAAC 59.642 44.000 0.29 0.00 45.65 1.89
80 81 5.252863 TCCACCTGATCCAAGAAAAGGATAA 59.747 40.000 0.29 0.00 45.65 1.75
81 82 4.788075 TCCACCTGATCCAAGAAAAGGATA 59.212 41.667 0.29 0.00 45.65 2.59
83 84 2.986019 TCCACCTGATCCAAGAAAAGGA 59.014 45.455 0.29 0.00 39.97 3.36
84 85 3.084786 GTCCACCTGATCCAAGAAAAGG 58.915 50.000 0.00 0.00 0.00 3.11
85 86 3.084786 GGTCCACCTGATCCAAGAAAAG 58.915 50.000 0.00 0.00 0.00 2.27
86 87 2.552155 CGGTCCACCTGATCCAAGAAAA 60.552 50.000 0.00 0.00 0.00 2.29
87 88 1.003118 CGGTCCACCTGATCCAAGAAA 59.997 52.381 0.00 0.00 0.00 2.52
88 89 0.613260 CGGTCCACCTGATCCAAGAA 59.387 55.000 0.00 0.00 0.00 2.52
89 90 0.252057 TCGGTCCACCTGATCCAAGA 60.252 55.000 0.00 0.00 0.00 3.02
90 91 0.613260 TTCGGTCCACCTGATCCAAG 59.387 55.000 0.00 0.00 0.00 3.61
91 92 1.209504 GATTCGGTCCACCTGATCCAA 59.790 52.381 0.00 0.00 0.00 3.53
92 93 0.830648 GATTCGGTCCACCTGATCCA 59.169 55.000 0.00 0.00 0.00 3.41
93 94 1.123928 AGATTCGGTCCACCTGATCC 58.876 55.000 0.00 0.00 0.00 3.36
94 95 2.990066 AAGATTCGGTCCACCTGATC 57.010 50.000 0.00 0.00 0.00 2.92
95 96 2.840651 AGAAAGATTCGGTCCACCTGAT 59.159 45.455 0.00 0.00 34.02 2.90
96 97 2.257207 AGAAAGATTCGGTCCACCTGA 58.743 47.619 0.00 0.00 34.02 3.86
97 98 2.770164 AGAAAGATTCGGTCCACCTG 57.230 50.000 0.00 0.00 34.02 4.00
98 99 3.790089 AAAGAAAGATTCGGTCCACCT 57.210 42.857 0.00 0.00 34.02 4.00
99 100 4.519350 AGAAAAAGAAAGATTCGGTCCACC 59.481 41.667 0.00 0.00 34.02 4.61
100 101 5.452777 CAGAAAAAGAAAGATTCGGTCCAC 58.547 41.667 0.00 0.00 34.02 4.02
101 102 4.518970 CCAGAAAAAGAAAGATTCGGTCCA 59.481 41.667 0.00 0.00 34.02 4.02
102 103 4.519350 ACCAGAAAAAGAAAGATTCGGTCC 59.481 41.667 0.00 0.00 30.02 4.46
103 104 5.452777 CACCAGAAAAAGAAAGATTCGGTC 58.547 41.667 0.00 0.00 32.01 4.79
104 105 4.278419 CCACCAGAAAAAGAAAGATTCGGT 59.722 41.667 0.00 0.00 33.45 4.69
105 106 4.798574 CCACCAGAAAAAGAAAGATTCGG 58.201 43.478 0.00 0.00 34.02 4.30
106 107 4.229876 GCCACCAGAAAAAGAAAGATTCG 58.770 43.478 0.00 0.00 34.02 3.34
107 108 4.560128 GGCCACCAGAAAAAGAAAGATTC 58.440 43.478 0.00 0.00 0.00 2.52
108 109 3.005791 CGGCCACCAGAAAAAGAAAGATT 59.994 43.478 2.24 0.00 0.00 2.40
109 110 2.558359 CGGCCACCAGAAAAAGAAAGAT 59.442 45.455 2.24 0.00 0.00 2.40
110 111 1.953686 CGGCCACCAGAAAAAGAAAGA 59.046 47.619 2.24 0.00 0.00 2.52
111 112 1.602920 GCGGCCACCAGAAAAAGAAAG 60.603 52.381 2.24 0.00 0.00 2.62
112 113 0.387565 GCGGCCACCAGAAAAAGAAA 59.612 50.000 2.24 0.00 0.00 2.52
113 114 1.460273 GGCGGCCACCAGAAAAAGAA 61.460 55.000 15.62 0.00 0.00 2.52
114 115 1.901464 GGCGGCCACCAGAAAAAGA 60.901 57.895 15.62 0.00 0.00 2.52
115 116 2.650778 GGCGGCCACCAGAAAAAG 59.349 61.111 15.62 0.00 0.00 2.27
116 117 3.291383 CGGCGGCCACCAGAAAAA 61.291 61.111 20.71 0.00 0.00 1.94
128 129 3.445518 TAGCATTCCAGAGCGGCGG 62.446 63.158 9.78 0.00 35.48 6.13
129 130 1.953138 CTAGCATTCCAGAGCGGCG 60.953 63.158 0.51 0.51 35.48 6.46
130 131 1.596477 CCTAGCATTCCAGAGCGGC 60.596 63.158 0.00 0.00 35.48 6.53
131 132 1.070445 CCCTAGCATTCCAGAGCGG 59.930 63.158 0.00 0.00 35.48 5.52
132 133 0.033228 CTCCCTAGCATTCCAGAGCG 59.967 60.000 0.00 0.00 35.48 5.03
144 145 2.811101 CGGTCAGCTGCTCCCTAG 59.189 66.667 9.47 0.00 0.00 3.02
145 146 3.461773 GCGGTCAGCTGCTCCCTA 61.462 66.667 9.47 0.00 43.44 3.53
155 156 1.440938 CGAGTCTAGGGAGCGGTCAG 61.441 65.000 17.59 5.50 0.00 3.51
156 157 1.451567 CGAGTCTAGGGAGCGGTCA 60.452 63.158 17.59 0.00 0.00 4.02
157 158 1.438562 GACGAGTCTAGGGAGCGGTC 61.439 65.000 5.93 5.93 0.00 4.79
158 159 1.451747 GACGAGTCTAGGGAGCGGT 60.452 63.158 0.00 0.00 0.00 5.68
159 160 2.188161 GGACGAGTCTAGGGAGCGG 61.188 68.421 3.09 0.00 0.00 5.52
160 161 0.106335 TAGGACGAGTCTAGGGAGCG 59.894 60.000 3.09 0.00 0.00 5.03
161 162 2.572209 ATAGGACGAGTCTAGGGAGC 57.428 55.000 3.09 0.00 0.00 4.70
185 186 9.187455 GTTCGTTTGTTATGTGATTTGGTAATT 57.813 29.630 0.00 0.00 0.00 1.40
186 187 7.810759 GGTTCGTTTGTTATGTGATTTGGTAAT 59.189 33.333 0.00 0.00 0.00 1.89
187 188 7.140048 GGTTCGTTTGTTATGTGATTTGGTAA 58.860 34.615 0.00 0.00 0.00 2.85
188 189 6.262496 TGGTTCGTTTGTTATGTGATTTGGTA 59.738 34.615 0.00 0.00 0.00 3.25
189 190 5.067936 TGGTTCGTTTGTTATGTGATTTGGT 59.932 36.000 0.00 0.00 0.00 3.67
190 191 5.524284 TGGTTCGTTTGTTATGTGATTTGG 58.476 37.500 0.00 0.00 0.00 3.28
191 192 7.306515 CCTTTGGTTCGTTTGTTATGTGATTTG 60.307 37.037 0.00 0.00 0.00 2.32
192 193 6.699642 CCTTTGGTTCGTTTGTTATGTGATTT 59.300 34.615 0.00 0.00 0.00 2.17
193 194 6.183360 ACCTTTGGTTCGTTTGTTATGTGATT 60.183 34.615 0.00 0.00 27.29 2.57
194 195 5.300792 ACCTTTGGTTCGTTTGTTATGTGAT 59.699 36.000 0.00 0.00 27.29 3.06
195 196 4.641094 ACCTTTGGTTCGTTTGTTATGTGA 59.359 37.500 0.00 0.00 27.29 3.58
196 197 4.927422 ACCTTTGGTTCGTTTGTTATGTG 58.073 39.130 0.00 0.00 27.29 3.21
197 198 5.344884 CAACCTTTGGTTCGTTTGTTATGT 58.655 37.500 0.00 0.00 43.05 2.29
198 199 4.742659 CCAACCTTTGGTTCGTTTGTTATG 59.257 41.667 0.00 0.00 43.05 1.90
199 200 4.939271 CCAACCTTTGGTTCGTTTGTTAT 58.061 39.130 0.00 0.00 43.05 1.89
200 201 4.373348 CCAACCTTTGGTTCGTTTGTTA 57.627 40.909 0.00 0.00 43.05 2.41
201 202 3.239587 CCAACCTTTGGTTCGTTTGTT 57.760 42.857 0.00 0.00 43.05 2.83
202 203 2.951457 CCAACCTTTGGTTCGTTTGT 57.049 45.000 0.00 0.00 43.05 2.83
207 208 9.380027 GAACCTATTCTTCCAACCTTTGGTTCG 62.380 44.444 4.88 0.00 40.58 3.95
208 209 6.294564 GAACCTATTCTTCCAACCTTTGGTTC 60.295 42.308 4.88 0.00 40.58 3.62
225 226 2.237893 CCGGTAACCAGTGGAACCTATT 59.762 50.000 25.82 10.27 37.80 1.73
227 228 1.269012 CCGGTAACCAGTGGAACCTA 58.731 55.000 25.82 8.32 37.80 3.08
275 276 1.260538 TGCTGTCTGAAGAGGCGGAT 61.261 55.000 0.00 0.00 30.96 4.18
328 329 0.320247 AGAGCTGCTGACCAGTTTCG 60.320 55.000 7.01 0.00 43.71 3.46
368 369 1.052617 TGGACAAACAGGACATCGGA 58.947 50.000 0.00 0.00 0.00 4.55
382 383 0.809636 CTGTGACGTTGCAGTGGACA 60.810 55.000 10.85 0.00 0.00 4.02
392 393 1.068741 GTCTTCCTCCACTGTGACGTT 59.931 52.381 9.86 0.00 0.00 3.99
427 428 1.373497 CTTCTCTGCCGTTGCGTCT 60.373 57.895 0.00 0.00 41.78 4.18
430 431 1.424493 GGATCTTCTCTGCCGTTGCG 61.424 60.000 0.00 0.00 41.78 4.85
439 440 1.333636 CCAGGGTGCGGATCTTCTCT 61.334 60.000 0.00 0.00 0.00 3.10
446 447 1.762460 CCTAGTCCAGGGTGCGGAT 60.762 63.158 0.00 0.00 41.26 4.18
454 455 2.066999 GGTCCAGCCCTAGTCCAGG 61.067 68.421 0.00 0.00 45.07 4.45
455 456 0.909610 TTGGTCCAGCCCTAGTCCAG 60.910 60.000 0.00 0.00 36.04 3.86
456 457 0.474854 TTTGGTCCAGCCCTAGTCCA 60.475 55.000 0.00 0.00 36.04 4.02
457 458 0.696501 TTTTGGTCCAGCCCTAGTCC 59.303 55.000 0.00 0.00 36.04 3.85
458 459 1.950954 GCTTTTGGTCCAGCCCTAGTC 60.951 57.143 0.00 0.00 36.04 2.59
544 545 5.831702 AATCAATGATTGGCTCTGTTCTC 57.168 39.130 7.79 0.00 30.42 2.87
545 546 6.600882 AAAATCAATGATTGGCTCTGTTCT 57.399 33.333 9.47 0.00 32.14 3.01
709 712 7.672983 AGTTTGTTGTCTCATATGTCGATTT 57.327 32.000 1.90 0.00 0.00 2.17
861 865 2.432628 CTCCGCTCGGCTCGTTTT 60.433 61.111 2.96 0.00 34.68 2.43
935 939 2.082231 AGCTCGTACTCGTTAAGCTCA 58.918 47.619 0.00 0.00 39.41 4.26
981 985 3.305720 CATGTTGTCTAGGGTAGGGCTA 58.694 50.000 0.00 0.00 0.00 3.93
993 997 2.297033 GGCATTGTTGACCATGTTGTCT 59.703 45.455 4.12 0.00 36.21 3.41
998 1002 1.876497 GCCGGCATTGTTGACCATGT 61.876 55.000 24.80 0.00 0.00 3.21
1044 1048 1.136774 GGCAAATTCGAGGTTCCGC 59.863 57.895 0.00 0.00 0.00 5.54
1056 1060 3.642848 ACACCTTCTTGACATTGGCAAAT 59.357 39.130 6.37 0.00 0.00 2.32
1062 1066 3.631686 TGTCCAACACCTTCTTGACATTG 59.368 43.478 0.00 0.00 0.00 2.82
1063 1067 3.897239 TGTCCAACACCTTCTTGACATT 58.103 40.909 0.00 0.00 0.00 2.71
1080 1084 2.860293 CCGTGCACGTTGATGTCC 59.140 61.111 34.81 0.00 37.74 4.02
1120 1124 2.885644 GATCATGTCGCACGCCGT 60.886 61.111 0.00 0.00 38.35 5.68
1126 1130 2.190313 GCCCTGGATCATGTCGCA 59.810 61.111 0.00 0.00 0.00 5.10
1130 1134 1.064166 CCTTCTTGCCCTGGATCATGT 60.064 52.381 0.00 0.00 0.00 3.21
1141 1145 2.442830 GATGGCCCCCTTCTTGCC 60.443 66.667 0.00 0.00 45.56 4.52
1186 1190 4.888325 AGGCCCCATCCCTCCGAG 62.888 72.222 0.00 0.00 0.00 4.63
1209 1213 3.424829 CCACATGCTTTGACGTGATGTAC 60.425 47.826 0.00 0.00 0.00 2.90
1214 1218 0.943673 CACCACATGCTTTGACGTGA 59.056 50.000 0.00 0.00 32.89 4.35
1216 1220 0.465460 ACCACCACATGCTTTGACGT 60.465 50.000 0.00 0.00 0.00 4.34
1221 1225 2.209315 GCCCACCACCACATGCTTT 61.209 57.895 0.00 0.00 0.00 3.51
1227 1231 3.884774 GTGAGGCCCACCACCACA 61.885 66.667 12.03 0.00 39.89 4.17
1239 1243 2.743928 GCCACGCTCTTGGTGAGG 60.744 66.667 0.00 0.00 42.87 3.86
1258 1262 3.095163 ATGCCTCCCCAGCTCCAG 61.095 66.667 0.00 0.00 0.00 3.86
1281 1285 1.138036 CGATACGCAGTTCACCCGA 59.862 57.895 0.00 0.00 37.78 5.14
1350 1354 1.075482 CACTGCATCCCCCTTGTGT 59.925 57.895 0.00 0.00 0.00 3.72
1359 1363 0.107459 GGAAGTCCCTCACTGCATCC 60.107 60.000 0.00 0.00 34.56 3.51
1392 1396 1.691196 CTTTCAGGTTTGCCTCACCA 58.309 50.000 0.00 0.00 44.97 4.17
1393 1397 0.961753 CCTTTCAGGTTTGCCTCACC 59.038 55.000 0.00 0.00 44.97 4.02
1463 1467 1.432270 GATGTACCTCGCTTGCCAGC 61.432 60.000 0.00 0.00 43.41 4.85
1530 1542 4.218312 AGTCCTCAAATGCTTTCAGGTTT 58.782 39.130 9.09 0.04 0.00 3.27
1542 1554 8.568794 GCTAAAAACTTCAACTAGTCCTCAAAT 58.431 33.333 0.00 0.00 0.00 2.32
1594 1606 6.127925 GCAAATCAGACATGGTACTCAAATGA 60.128 38.462 0.00 0.00 0.00 2.57
1609 1621 2.813754 TGCTAACACAGGCAAATCAGAC 59.186 45.455 0.00 0.00 35.40 3.51
1756 1769 8.738645 AGTCTTTGTGAAACTCTAACTGAATT 57.261 30.769 0.00 0.00 38.04 2.17
1774 1788 6.257411 CAGATATACTGCCACAGAAGTCTTTG 59.743 42.308 0.78 0.00 39.86 2.77
1855 1873 7.594758 CGCACAAAAATTCTGAGAAAAATCCTA 59.405 33.333 0.00 0.00 0.00 2.94
1856 1874 6.421801 CGCACAAAAATTCTGAGAAAAATCCT 59.578 34.615 0.00 0.00 0.00 3.24
1857 1875 6.200854 ACGCACAAAAATTCTGAGAAAAATCC 59.799 34.615 0.00 0.00 0.00 3.01
1858 1876 7.059212 CACGCACAAAAATTCTGAGAAAAATC 58.941 34.615 0.00 0.00 0.00 2.17
1948 1972 3.452627 GACCCTGCCTCAAGATTCTTCTA 59.547 47.826 0.00 0.00 0.00 2.10
1969 1996 4.209307 TCAGTGTTTGTTGTACCACAGA 57.791 40.909 0.00 0.00 0.00 3.41
2000 2027 1.901650 GCCTTTCTTGGCGTCGACAG 61.902 60.000 17.16 9.59 43.74 3.51
2039 2067 8.650490 TGTGTGGTGTCATATAGTGATTGATAT 58.350 33.333 0.00 0.00 39.48 1.63
2080 2108 7.617723 AGTGTCTATTTAGAGACCACTTCTGAT 59.382 37.037 10.35 0.00 44.90 2.90
2085 2113 5.246203 TGCAGTGTCTATTTAGAGACCACTT 59.754 40.000 10.35 0.00 44.90 3.16
2090 2118 8.695284 CGATAATTGCAGTGTCTATTTAGAGAC 58.305 37.037 6.75 6.75 44.35 3.36
2223 2258 4.082625 TGGTTCATTGTAGCAGCAAAGATG 60.083 41.667 0.00 0.00 31.63 2.90
2224 2259 4.081406 TGGTTCATTGTAGCAGCAAAGAT 58.919 39.130 0.00 0.00 31.63 2.40
2225 2260 3.253188 GTGGTTCATTGTAGCAGCAAAGA 59.747 43.478 0.00 0.00 31.63 2.52
2226 2261 3.254166 AGTGGTTCATTGTAGCAGCAAAG 59.746 43.478 0.00 0.00 31.63 2.77
2227 2262 3.221771 AGTGGTTCATTGTAGCAGCAAA 58.778 40.909 0.00 0.00 31.63 3.68
2228 2263 2.862541 AGTGGTTCATTGTAGCAGCAA 58.137 42.857 0.00 0.00 0.00 3.91
2229 2264 2.566833 AGTGGTTCATTGTAGCAGCA 57.433 45.000 0.00 0.00 0.00 4.41
2230 2265 4.253685 TCTTAGTGGTTCATTGTAGCAGC 58.746 43.478 0.00 0.00 0.00 5.25
2231 2266 6.992063 ATTCTTAGTGGTTCATTGTAGCAG 57.008 37.500 0.00 0.00 0.00 4.24
2232 2267 9.461312 AATAATTCTTAGTGGTTCATTGTAGCA 57.539 29.630 0.00 0.00 0.00 3.49
2256 2291 9.331282 ACGAAGATGCTAAGCTAGATTTTAAAT 57.669 29.630 0.00 0.00 0.00 1.40
2257 2292 8.718102 ACGAAGATGCTAAGCTAGATTTTAAA 57.282 30.769 0.00 0.00 0.00 1.52
2258 2293 8.718102 AACGAAGATGCTAAGCTAGATTTTAA 57.282 30.769 0.00 0.00 0.00 1.52
2259 2294 9.982651 ATAACGAAGATGCTAAGCTAGATTTTA 57.017 29.630 0.00 0.00 0.00 1.52
2260 2295 8.894768 ATAACGAAGATGCTAAGCTAGATTTT 57.105 30.769 0.00 0.00 0.00 1.82
2261 2296 7.327275 CGATAACGAAGATGCTAAGCTAGATTT 59.673 37.037 0.00 0.00 42.66 2.17
2262 2297 6.804295 CGATAACGAAGATGCTAAGCTAGATT 59.196 38.462 0.00 0.00 42.66 2.40
2293 2328 1.194772 GTAACTTCGCCTGAACACTGC 59.805 52.381 0.00 0.00 0.00 4.40
2294 2329 2.476619 CTGTAACTTCGCCTGAACACTG 59.523 50.000 0.00 0.00 0.00 3.66
2297 2332 3.462483 TTCTGTAACTTCGCCTGAACA 57.538 42.857 0.00 0.00 0.00 3.18
2301 2336 3.849911 TCAGATTCTGTAACTTCGCCTG 58.150 45.455 13.23 0.00 32.61 4.85
2307 2342 8.324306 TGGATTCTCATTCAGATTCTGTAACTT 58.676 33.333 13.23 0.00 33.58 2.66
2315 2350 5.688807 TCCCTTGGATTCTCATTCAGATTC 58.311 41.667 0.00 0.00 32.65 2.52
2330 2365 0.036388 GTCGCTGACAATCCCTTGGA 60.036 55.000 4.20 0.00 36.64 3.53
2370 2411 1.263776 CGTCTCAGCTGCTTCTAACG 58.736 55.000 9.47 8.23 0.00 3.18
2388 2429 4.873129 CGGACTCGGGTGATGCCG 62.873 72.222 0.00 0.00 38.44 5.69
2392 2433 1.144057 GCATTCGGACTCGGGTGAT 59.856 57.895 0.00 0.00 36.95 3.06
2401 2442 0.669318 TGGACAGAACGCATTCGGAC 60.669 55.000 0.00 0.00 40.04 4.79
2404 2445 0.865111 TTGTGGACAGAACGCATTCG 59.135 50.000 0.00 0.00 40.04 3.34
2410 2451 2.662791 CGAAGCATTTGTGGACAGAACG 60.663 50.000 0.00 0.00 0.00 3.95
2443 2484 0.391661 GAGATCCTGAAGTGGCGCAA 60.392 55.000 10.83 0.00 0.00 4.85
2445 2486 1.522580 GGAGATCCTGAAGTGGCGC 60.523 63.158 0.00 0.00 0.00 6.53
2446 2487 1.227089 CGGAGATCCTGAAGTGGCG 60.227 63.158 0.00 0.00 0.00 5.69
2452 2493 1.416401 GGGCATAACGGAGATCCTGAA 59.584 52.381 0.00 0.00 0.00 3.02
2457 2498 1.668151 GCGGGGCATAACGGAGATC 60.668 63.158 0.00 0.00 0.00 2.75
2461 2502 2.437002 GTTGCGGGGCATAACGGA 60.437 61.111 0.00 0.00 38.76 4.69
2516 2557 4.176752 CGGCTAGGGTTGGGGAGC 62.177 72.222 0.00 0.00 0.00 4.70
2517 2558 4.176752 GCGGCTAGGGTTGGGGAG 62.177 72.222 0.00 0.00 0.00 4.30
2520 2561 4.796495 GTGGCGGCTAGGGTTGGG 62.796 72.222 11.43 0.00 0.00 4.12
2521 2562 3.717294 AGTGGCGGCTAGGGTTGG 61.717 66.667 11.43 0.00 0.00 3.77
2522 2563 2.436646 CAGTGGCGGCTAGGGTTG 60.437 66.667 11.43 0.00 0.00 3.77
2523 2564 3.717294 CCAGTGGCGGCTAGGGTT 61.717 66.667 11.43 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.