Multiple sequence alignment - TraesCS1B01G052800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G052800 chr1B 100.000 3392 0 0 1 3392 33068100 33064709 0.000000e+00 6264.0
1 TraesCS1B01G052800 chr1B 80.017 1176 211 19 1001 2167 642956980 642958140 0.000000e+00 848.0
2 TraesCS1B01G052800 chr1D 90.748 1859 117 28 697 2528 20567986 20569816 0.000000e+00 2429.0
3 TraesCS1B01G052800 chr1D 90.741 54 4 1 717 770 20567608 20567660 1.690000e-08 71.3
4 TraesCS1B01G052800 chr1A 91.598 1702 105 19 770 2459 21987165 21985490 0.000000e+00 2316.0
5 TraesCS1B01G052800 chr1A 90.090 111 10 1 1053 1163 21991999 21991890 3.530000e-30 143.0
6 TraesCS1B01G052800 chr7A 99.192 866 4 2 2530 3392 499446802 499445937 0.000000e+00 1557.0
7 TraesCS1B01G052800 chr7A 98.736 870 6 4 2527 3392 575583875 575584743 0.000000e+00 1541.0
8 TraesCS1B01G052800 chr7A 76.471 255 46 14 1998 2245 545935482 545935729 3.550000e-25 126.0
9 TraesCS1B01G052800 chr4B 98.856 874 6 3 2522 3392 604499781 604498909 0.000000e+00 1555.0
10 TraesCS1B01G052800 chr4B 98.967 871 4 4 2527 3392 173329285 173328415 0.000000e+00 1554.0
11 TraesCS1B01G052800 chr4A 98.849 869 7 2 2527 3392 344007701 344006833 0.000000e+00 1546.0
12 TraesCS1B01G052800 chr4A 98.845 866 7 2 2530 3392 593672388 593673253 0.000000e+00 1541.0
13 TraesCS1B01G052800 chr3A 98.961 866 6 2 2530 3392 61241622 61242487 0.000000e+00 1546.0
14 TraesCS1B01G052800 chr2A 98.849 869 6 3 2528 3392 769484912 769484044 0.000000e+00 1546.0
15 TraesCS1B01G052800 chr5B 98.734 869 7 3 2528 3392 295200177 295201045 0.000000e+00 1541.0
16 TraesCS1B01G052800 chr6A 80.409 1368 227 35 1001 2346 13505060 13503712 0.000000e+00 1003.0
17 TraesCS1B01G052800 chr6A 77.834 1394 243 53 996 2365 602624825 602623474 0.000000e+00 802.0
18 TraesCS1B01G052800 chr6D 77.994 1386 255 42 996 2365 455830652 455829301 0.000000e+00 824.0
19 TraesCS1B01G052800 chr6B 77.842 1381 258 41 1000 2365 693063993 693062646 0.000000e+00 811.0
20 TraesCS1B01G052800 chr7D 75.926 270 46 18 1998 2258 451186690 451186431 1.650000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G052800 chr1B 33064709 33068100 3391 True 6264.00 6264 100.0000 1 3392 1 chr1B.!!$R1 3391
1 TraesCS1B01G052800 chr1B 642956980 642958140 1160 False 848.00 848 80.0170 1001 2167 1 chr1B.!!$F1 1166
2 TraesCS1B01G052800 chr1D 20567608 20569816 2208 False 1250.15 2429 90.7445 697 2528 2 chr1D.!!$F1 1831
3 TraesCS1B01G052800 chr1A 21985490 21987165 1675 True 2316.00 2316 91.5980 770 2459 1 chr1A.!!$R1 1689
4 TraesCS1B01G052800 chr7A 499445937 499446802 865 True 1557.00 1557 99.1920 2530 3392 1 chr7A.!!$R1 862
5 TraesCS1B01G052800 chr7A 575583875 575584743 868 False 1541.00 1541 98.7360 2527 3392 1 chr7A.!!$F2 865
6 TraesCS1B01G052800 chr4B 604498909 604499781 872 True 1555.00 1555 98.8560 2522 3392 1 chr4B.!!$R2 870
7 TraesCS1B01G052800 chr4B 173328415 173329285 870 True 1554.00 1554 98.9670 2527 3392 1 chr4B.!!$R1 865
8 TraesCS1B01G052800 chr4A 344006833 344007701 868 True 1546.00 1546 98.8490 2527 3392 1 chr4A.!!$R1 865
9 TraesCS1B01G052800 chr4A 593672388 593673253 865 False 1541.00 1541 98.8450 2530 3392 1 chr4A.!!$F1 862
10 TraesCS1B01G052800 chr3A 61241622 61242487 865 False 1546.00 1546 98.9610 2530 3392 1 chr3A.!!$F1 862
11 TraesCS1B01G052800 chr2A 769484044 769484912 868 True 1546.00 1546 98.8490 2528 3392 1 chr2A.!!$R1 864
12 TraesCS1B01G052800 chr5B 295200177 295201045 868 False 1541.00 1541 98.7340 2528 3392 1 chr5B.!!$F1 864
13 TraesCS1B01G052800 chr6A 13503712 13505060 1348 True 1003.00 1003 80.4090 1001 2346 1 chr6A.!!$R1 1345
14 TraesCS1B01G052800 chr6A 602623474 602624825 1351 True 802.00 802 77.8340 996 2365 1 chr6A.!!$R2 1369
15 TraesCS1B01G052800 chr6D 455829301 455830652 1351 True 824.00 824 77.9940 996 2365 1 chr6D.!!$R1 1369
16 TraesCS1B01G052800 chr6B 693062646 693063993 1347 True 811.00 811 77.8420 1000 2365 1 chr6B.!!$R1 1365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.041833 TGCTGGAGTCTCTTAGGCCT 59.958 55.0 11.78 11.78 0.0 5.19 F
556 557 0.102663 GTAGGGCGTGCTTAGGACTC 59.897 60.0 1.88 0.00 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1506 1.063867 ACGTAGTCCAGGAGGTAGCAT 60.064 52.381 0.00 0.0 29.74 3.79 R
2414 2837 0.038618 TCGTTATGATCGATGGCCGG 60.039 55.000 0.54 0.0 39.14 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.056588 TGGCCTTGGAATTGAATTTGC 57.943 42.857 3.32 0.00 0.00 3.68
23 24 2.290197 TGGCCTTGGAATTGAATTTGCC 60.290 45.455 3.32 1.34 36.90 4.52
24 25 2.026915 GGCCTTGGAATTGAATTTGCCT 60.027 45.455 0.00 0.00 33.64 4.75
25 26 3.264947 GCCTTGGAATTGAATTTGCCTC 58.735 45.455 0.00 0.00 0.00 4.70
26 27 3.865446 CCTTGGAATTGAATTTGCCTCC 58.135 45.455 0.00 0.00 0.00 4.30
27 28 3.516700 CCTTGGAATTGAATTTGCCTCCT 59.483 43.478 0.00 0.00 0.00 3.69
28 29 4.711355 CCTTGGAATTGAATTTGCCTCCTA 59.289 41.667 0.00 0.00 0.00 2.94
29 30 5.187576 CCTTGGAATTGAATTTGCCTCCTAA 59.812 40.000 0.00 0.00 0.00 2.69
30 31 6.295802 CCTTGGAATTGAATTTGCCTCCTAAA 60.296 38.462 0.00 0.00 0.00 1.85
31 32 6.872585 TGGAATTGAATTTGCCTCCTAAAT 57.127 33.333 0.00 0.00 0.00 1.40
32 33 7.969690 TGGAATTGAATTTGCCTCCTAAATA 57.030 32.000 0.00 0.00 0.00 1.40
33 34 7.781056 TGGAATTGAATTTGCCTCCTAAATAC 58.219 34.615 0.00 0.00 0.00 1.89
34 35 7.619302 TGGAATTGAATTTGCCTCCTAAATACT 59.381 33.333 0.00 0.00 0.00 2.12
35 36 8.478066 GGAATTGAATTTGCCTCCTAAATACTT 58.522 33.333 0.00 0.00 0.00 2.24
36 37 9.875691 GAATTGAATTTGCCTCCTAAATACTTT 57.124 29.630 0.00 0.00 0.00 2.66
40 41 8.466798 TGAATTTGCCTCCTAAATACTTTTAGC 58.533 33.333 0.91 0.00 41.94 3.09
41 42 6.431198 TTTGCCTCCTAAATACTTTTAGCG 57.569 37.500 0.91 0.00 41.94 4.26
42 43 4.448210 TGCCTCCTAAATACTTTTAGCGG 58.552 43.478 0.91 4.62 41.94 5.52
43 44 3.250280 GCCTCCTAAATACTTTTAGCGGC 59.750 47.826 15.11 15.11 44.26 6.53
44 45 3.493503 CCTCCTAAATACTTTTAGCGGCG 59.506 47.826 0.51 0.51 41.94 6.46
45 46 3.460103 TCCTAAATACTTTTAGCGGCGG 58.540 45.455 9.78 0.00 41.94 6.13
46 47 2.546789 CCTAAATACTTTTAGCGGCGGG 59.453 50.000 9.78 0.00 41.94 6.13
47 48 0.736636 AAATACTTTTAGCGGCGGGC 59.263 50.000 9.78 0.00 44.05 6.13
57 58 4.137872 CGGCGGGCGACTAAAGGA 62.138 66.667 20.10 0.00 0.00 3.36
58 59 2.266689 GGCGGGCGACTAAAGGAA 59.733 61.111 0.00 0.00 0.00 3.36
59 60 1.376295 GGCGGGCGACTAAAGGAAA 60.376 57.895 0.00 0.00 0.00 3.13
60 61 0.746923 GGCGGGCGACTAAAGGAAAT 60.747 55.000 0.00 0.00 0.00 2.17
61 62 0.377203 GCGGGCGACTAAAGGAAATG 59.623 55.000 0.00 0.00 0.00 2.32
62 63 2.010043 GCGGGCGACTAAAGGAAATGA 61.010 52.381 0.00 0.00 0.00 2.57
63 64 2.352388 CGGGCGACTAAAGGAAATGAA 58.648 47.619 0.00 0.00 0.00 2.57
64 65 2.745281 CGGGCGACTAAAGGAAATGAAA 59.255 45.455 0.00 0.00 0.00 2.69
65 66 3.189702 CGGGCGACTAAAGGAAATGAAAA 59.810 43.478 0.00 0.00 0.00 2.29
66 67 4.482386 GGGCGACTAAAGGAAATGAAAAC 58.518 43.478 0.00 0.00 0.00 2.43
67 68 4.217767 GGGCGACTAAAGGAAATGAAAACT 59.782 41.667 0.00 0.00 0.00 2.66
68 69 5.154222 GGCGACTAAAGGAAATGAAAACTG 58.846 41.667 0.00 0.00 0.00 3.16
69 70 5.154222 GCGACTAAAGGAAATGAAAACTGG 58.846 41.667 0.00 0.00 0.00 4.00
70 71 5.699839 CGACTAAAGGAAATGAAAACTGGG 58.300 41.667 0.00 0.00 0.00 4.45
71 72 5.240844 CGACTAAAGGAAATGAAAACTGGGT 59.759 40.000 0.00 0.00 0.00 4.51
72 73 6.428771 CGACTAAAGGAAATGAAAACTGGGTA 59.571 38.462 0.00 0.00 0.00 3.69
73 74 7.520451 ACTAAAGGAAATGAAAACTGGGTAC 57.480 36.000 0.00 0.00 0.00 3.34
90 91 3.978687 GGTACCTGATAATCACAGTCCG 58.021 50.000 4.06 0.00 34.04 4.79
91 92 3.383825 GGTACCTGATAATCACAGTCCGT 59.616 47.826 4.06 0.00 34.04 4.69
93 94 2.205074 CCTGATAATCACAGTCCGTGC 58.795 52.381 0.00 0.00 45.92 5.34
94 95 2.159043 CCTGATAATCACAGTCCGTGCT 60.159 50.000 0.00 0.00 45.92 4.40
95 96 3.068165 CCTGATAATCACAGTCCGTGCTA 59.932 47.826 0.00 0.00 45.92 3.49
96 97 4.262207 CCTGATAATCACAGTCCGTGCTAT 60.262 45.833 0.00 0.00 45.92 2.97
97 98 4.871513 TGATAATCACAGTCCGTGCTATC 58.128 43.478 0.00 0.00 45.92 2.08
98 99 2.604046 AATCACAGTCCGTGCTATCC 57.396 50.000 0.00 0.00 45.92 2.59
99 100 0.753262 ATCACAGTCCGTGCTATCCC 59.247 55.000 0.00 0.00 45.92 3.85
100 101 0.324368 TCACAGTCCGTGCTATCCCT 60.324 55.000 0.00 0.00 45.92 4.20
101 102 0.537188 CACAGTCCGTGCTATCCCTT 59.463 55.000 0.00 0.00 39.19 3.95
102 103 0.537188 ACAGTCCGTGCTATCCCTTG 59.463 55.000 0.00 0.00 0.00 3.61
103 104 0.537188 CAGTCCGTGCTATCCCTTGT 59.463 55.000 0.00 0.00 0.00 3.16
104 105 0.537188 AGTCCGTGCTATCCCTTGTG 59.463 55.000 0.00 0.00 0.00 3.33
105 106 0.535335 GTCCGTGCTATCCCTTGTGA 59.465 55.000 0.00 0.00 0.00 3.58
106 107 0.535335 TCCGTGCTATCCCTTGTGAC 59.465 55.000 0.00 0.00 0.00 3.67
107 108 0.249120 CCGTGCTATCCCTTGTGACA 59.751 55.000 0.00 0.00 0.00 3.58
108 109 1.338674 CCGTGCTATCCCTTGTGACAA 60.339 52.381 0.00 0.00 0.00 3.18
109 110 2.422597 CGTGCTATCCCTTGTGACAAA 58.577 47.619 0.00 0.00 0.00 2.83
110 111 3.009723 CGTGCTATCCCTTGTGACAAAT 58.990 45.455 0.00 0.00 0.00 2.32
111 112 3.440173 CGTGCTATCCCTTGTGACAAATT 59.560 43.478 0.00 0.00 0.00 1.82
112 113 4.437390 CGTGCTATCCCTTGTGACAAATTC 60.437 45.833 0.00 0.00 0.00 2.17
113 114 4.702131 GTGCTATCCCTTGTGACAAATTCT 59.298 41.667 0.00 0.00 0.00 2.40
114 115 4.701651 TGCTATCCCTTGTGACAAATTCTG 59.298 41.667 0.00 0.00 0.00 3.02
115 116 4.943705 GCTATCCCTTGTGACAAATTCTGA 59.056 41.667 0.00 0.00 0.00 3.27
116 117 5.591877 GCTATCCCTTGTGACAAATTCTGAT 59.408 40.000 0.00 0.54 0.00 2.90
117 118 6.096001 GCTATCCCTTGTGACAAATTCTGATT 59.904 38.462 0.00 0.00 0.00 2.57
118 119 5.710513 TCCCTTGTGACAAATTCTGATTG 57.289 39.130 0.00 0.00 0.00 2.67
119 120 4.022068 TCCCTTGTGACAAATTCTGATTGC 60.022 41.667 0.00 0.00 0.00 3.56
120 121 4.262121 CCCTTGTGACAAATTCTGATTGCA 60.262 41.667 0.00 0.00 0.00 4.08
121 122 5.291178 CCTTGTGACAAATTCTGATTGCAA 58.709 37.500 0.00 0.00 0.00 4.08
122 123 5.176223 CCTTGTGACAAATTCTGATTGCAAC 59.824 40.000 0.00 0.00 0.00 4.17
123 124 4.619973 TGTGACAAATTCTGATTGCAACC 58.380 39.130 0.00 0.00 0.00 3.77
124 125 4.099113 TGTGACAAATTCTGATTGCAACCA 59.901 37.500 0.00 0.00 0.00 3.67
125 126 5.049167 GTGACAAATTCTGATTGCAACCAA 58.951 37.500 0.00 0.00 35.01 3.67
126 127 5.523188 GTGACAAATTCTGATTGCAACCAAA 59.477 36.000 0.00 0.00 34.05 3.28
127 128 6.036953 GTGACAAATTCTGATTGCAACCAAAA 59.963 34.615 0.00 0.00 34.05 2.44
128 129 6.258287 TGACAAATTCTGATTGCAACCAAAAG 59.742 34.615 0.00 0.00 34.05 2.27
129 130 5.528320 ACAAATTCTGATTGCAACCAAAAGG 59.472 36.000 0.00 0.00 34.05 3.11
130 131 2.818130 TCTGATTGCAACCAAAAGGC 57.182 45.000 0.00 0.00 34.05 4.35
131 132 2.318908 TCTGATTGCAACCAAAAGGCT 58.681 42.857 0.00 0.00 34.05 4.58
132 133 2.036217 TCTGATTGCAACCAAAAGGCTG 59.964 45.455 0.00 0.00 34.05 4.85
133 134 1.150827 GATTGCAACCAAAAGGCTGC 58.849 50.000 0.00 3.08 34.05 5.25
134 135 0.469070 ATTGCAACCAAAAGGCTGCA 59.531 45.000 0.00 8.39 42.79 4.41
135 136 0.179078 TTGCAACCAAAAGGCTGCAG 60.179 50.000 10.11 10.11 44.94 4.41
136 137 1.301165 GCAACCAAAAGGCTGCAGG 60.301 57.895 17.12 0.00 34.87 4.85
137 138 1.747325 GCAACCAAAAGGCTGCAGGA 61.747 55.000 17.12 0.00 34.87 3.86
138 139 0.971386 CAACCAAAAGGCTGCAGGAT 59.029 50.000 17.12 0.00 0.00 3.24
139 140 0.971386 AACCAAAAGGCTGCAGGATG 59.029 50.000 17.12 0.00 40.87 3.51
153 154 1.404391 CAGGATGCCAATGTCTGAAGC 59.596 52.381 0.00 0.00 0.00 3.86
154 155 1.284198 AGGATGCCAATGTCTGAAGCT 59.716 47.619 0.00 0.00 0.00 3.74
155 156 1.404391 GGATGCCAATGTCTGAAGCTG 59.596 52.381 0.00 0.00 0.00 4.24
156 157 0.815734 ATGCCAATGTCTGAAGCTGC 59.184 50.000 0.00 0.00 0.00 5.25
157 158 0.251033 TGCCAATGTCTGAAGCTGCT 60.251 50.000 0.00 0.00 0.00 4.24
158 159 0.450983 GCCAATGTCTGAAGCTGCTC 59.549 55.000 1.00 0.00 0.00 4.26
159 160 1.817357 CCAATGTCTGAAGCTGCTCA 58.183 50.000 1.00 2.06 0.00 4.26
160 161 2.366533 CCAATGTCTGAAGCTGCTCAT 58.633 47.619 1.00 0.00 0.00 2.90
161 162 2.753452 CCAATGTCTGAAGCTGCTCATT 59.247 45.455 1.00 5.14 0.00 2.57
162 163 3.192844 CCAATGTCTGAAGCTGCTCATTT 59.807 43.478 1.00 0.00 0.00 2.32
163 164 4.321750 CCAATGTCTGAAGCTGCTCATTTT 60.322 41.667 1.00 0.00 0.00 1.82
164 165 5.227908 CAATGTCTGAAGCTGCTCATTTTT 58.772 37.500 1.00 0.00 0.00 1.94
185 186 4.893424 TTAGATGATAAAACGGCTTGGC 57.107 40.909 0.00 0.00 0.00 4.52
186 187 2.024414 AGATGATAAAACGGCTTGGCC 58.976 47.619 0.00 0.00 46.75 5.36
199 200 4.312052 TGGCCTATTGGTCAACGC 57.688 55.556 3.32 0.00 46.26 4.84
200 201 1.682849 TGGCCTATTGGTCAACGCT 59.317 52.632 3.32 0.00 46.26 5.07
201 202 0.392461 TGGCCTATTGGTCAACGCTC 60.392 55.000 3.32 0.00 46.26 5.03
202 203 0.107654 GGCCTATTGGTCAACGCTCT 60.108 55.000 0.00 0.00 38.01 4.09
203 204 1.009829 GCCTATTGGTCAACGCTCTG 58.990 55.000 0.00 0.00 35.27 3.35
204 205 1.009829 CCTATTGGTCAACGCTCTGC 58.990 55.000 0.00 0.00 0.00 4.26
205 206 1.406069 CCTATTGGTCAACGCTCTGCT 60.406 52.381 0.00 0.00 0.00 4.24
206 207 1.662629 CTATTGGTCAACGCTCTGCTG 59.337 52.381 0.00 0.00 0.00 4.41
207 208 0.957395 ATTGGTCAACGCTCTGCTGG 60.957 55.000 0.00 0.00 0.00 4.85
208 209 2.038814 TTGGTCAACGCTCTGCTGGA 62.039 55.000 0.00 0.00 0.00 3.86
209 210 1.739562 GGTCAACGCTCTGCTGGAG 60.740 63.158 3.48 3.48 44.49 3.86
210 211 1.005630 GTCAACGCTCTGCTGGAGT 60.006 57.895 8.56 0.00 43.62 3.85
211 212 1.011451 GTCAACGCTCTGCTGGAGTC 61.011 60.000 8.56 0.00 43.62 3.36
212 213 1.181741 TCAACGCTCTGCTGGAGTCT 61.182 55.000 8.56 0.00 43.62 3.24
213 214 0.735632 CAACGCTCTGCTGGAGTCTC 60.736 60.000 8.56 0.00 43.62 3.36
214 215 0.897863 AACGCTCTGCTGGAGTCTCT 60.898 55.000 0.00 0.00 43.62 3.10
215 216 0.897863 ACGCTCTGCTGGAGTCTCTT 60.898 55.000 0.00 0.00 43.62 2.85
216 217 1.098869 CGCTCTGCTGGAGTCTCTTA 58.901 55.000 0.00 0.00 43.62 2.10
217 218 1.065401 CGCTCTGCTGGAGTCTCTTAG 59.935 57.143 0.00 0.45 43.62 2.18
218 219 1.408702 GCTCTGCTGGAGTCTCTTAGG 59.591 57.143 0.00 0.00 43.62 2.69
219 220 1.408702 CTCTGCTGGAGTCTCTTAGGC 59.591 57.143 0.00 0.66 37.30 3.93
220 221 0.463620 CTGCTGGAGTCTCTTAGGCC 59.536 60.000 0.00 0.00 0.00 5.19
221 222 0.041833 TGCTGGAGTCTCTTAGGCCT 59.958 55.000 11.78 11.78 0.00 5.19
222 223 1.288037 TGCTGGAGTCTCTTAGGCCTA 59.712 52.381 8.91 8.91 0.00 3.93
223 224 2.091055 TGCTGGAGTCTCTTAGGCCTAT 60.091 50.000 14.74 0.00 0.00 2.57
224 225 2.969262 GCTGGAGTCTCTTAGGCCTATT 59.031 50.000 14.74 0.00 0.00 1.73
225 226 3.244044 GCTGGAGTCTCTTAGGCCTATTG 60.244 52.174 14.74 10.06 0.00 1.90
226 227 3.964031 CTGGAGTCTCTTAGGCCTATTGT 59.036 47.826 14.74 0.00 0.00 2.71
227 228 5.138758 TGGAGTCTCTTAGGCCTATTGTA 57.861 43.478 14.74 0.00 0.00 2.41
228 229 5.716979 TGGAGTCTCTTAGGCCTATTGTAT 58.283 41.667 14.74 0.00 0.00 2.29
229 230 6.860034 TGGAGTCTCTTAGGCCTATTGTATA 58.140 40.000 14.74 0.00 0.00 1.47
230 231 7.479579 TGGAGTCTCTTAGGCCTATTGTATAT 58.520 38.462 14.74 0.00 0.00 0.86
231 232 7.956315 TGGAGTCTCTTAGGCCTATTGTATATT 59.044 37.037 14.74 0.00 0.00 1.28
232 233 8.254508 GGAGTCTCTTAGGCCTATTGTATATTG 58.745 40.741 14.74 0.00 0.00 1.90
233 234 8.728596 AGTCTCTTAGGCCTATTGTATATTGT 57.271 34.615 14.74 0.00 0.00 2.71
234 235 9.824216 AGTCTCTTAGGCCTATTGTATATTGTA 57.176 33.333 14.74 0.00 0.00 2.41
242 243 8.880244 AGGCCTATTGTATATTGTATCACTTGA 58.120 33.333 1.29 0.00 0.00 3.02
243 244 9.155975 GGCCTATTGTATATTGTATCACTTGAG 57.844 37.037 0.00 0.00 0.00 3.02
244 245 9.929180 GCCTATTGTATATTGTATCACTTGAGA 57.071 33.333 0.00 0.00 0.00 3.27
248 249 9.817809 ATTGTATATTGTATCACTTGAGAACGT 57.182 29.630 0.00 0.00 0.00 3.99
249 250 8.851960 TGTATATTGTATCACTTGAGAACGTC 57.148 34.615 0.00 0.00 0.00 4.34
250 251 8.683615 TGTATATTGTATCACTTGAGAACGTCT 58.316 33.333 0.00 0.00 0.00 4.18
251 252 9.171701 GTATATTGTATCACTTGAGAACGTCTC 57.828 37.037 7.74 7.74 43.65 3.36
252 253 5.707242 TTGTATCACTTGAGAACGTCTCT 57.293 39.130 13.65 7.91 43.73 3.10
261 262 2.949142 GAGAACGTCTCTCCAAAGACC 58.051 52.381 13.53 0.00 44.39 3.85
262 263 2.296471 GAGAACGTCTCTCCAAAGACCA 59.704 50.000 13.53 0.00 44.39 4.02
263 264 2.698797 AGAACGTCTCTCCAAAGACCAA 59.301 45.455 0.00 0.00 42.23 3.67
264 265 3.134081 AGAACGTCTCTCCAAAGACCAAA 59.866 43.478 0.00 0.00 42.23 3.28
265 266 3.113260 ACGTCTCTCCAAAGACCAAAG 57.887 47.619 0.00 0.00 42.23 2.77
266 267 2.224305 ACGTCTCTCCAAAGACCAAAGG 60.224 50.000 0.00 0.00 42.23 3.11
267 268 2.155279 GTCTCTCCAAAGACCAAAGGC 58.845 52.381 0.00 0.00 39.85 4.35
268 269 1.073923 TCTCTCCAAAGACCAAAGGCC 59.926 52.381 0.00 0.00 0.00 5.19
269 270 1.074566 CTCTCCAAAGACCAAAGGCCT 59.925 52.381 0.00 0.00 0.00 5.19
270 271 1.073923 TCTCCAAAGACCAAAGGCCTC 59.926 52.381 5.23 0.00 0.00 4.70
271 272 0.250727 TCCAAAGACCAAAGGCCTCG 60.251 55.000 5.23 0.00 0.00 4.63
272 273 0.537371 CCAAAGACCAAAGGCCTCGT 60.537 55.000 5.23 1.96 0.00 4.18
273 274 1.318576 CAAAGACCAAAGGCCTCGTT 58.681 50.000 5.23 0.00 0.00 3.85
274 275 1.681264 CAAAGACCAAAGGCCTCGTTT 59.319 47.619 5.23 0.00 0.00 3.60
275 276 1.318576 AAGACCAAAGGCCTCGTTTG 58.681 50.000 5.23 7.29 38.46 2.93
276 277 0.472471 AGACCAAAGGCCTCGTTTGA 59.528 50.000 15.88 0.00 40.31 2.69
277 278 1.133915 AGACCAAAGGCCTCGTTTGAA 60.134 47.619 15.88 0.00 40.31 2.69
278 279 1.679153 GACCAAAGGCCTCGTTTGAAA 59.321 47.619 15.88 0.00 40.31 2.69
279 280 2.100087 GACCAAAGGCCTCGTTTGAAAA 59.900 45.455 15.88 0.00 40.31 2.29
280 281 2.100749 ACCAAAGGCCTCGTTTGAAAAG 59.899 45.455 15.88 3.31 40.31 2.27
281 282 2.100749 CCAAAGGCCTCGTTTGAAAAGT 59.899 45.455 15.88 0.00 40.31 2.66
282 283 3.372060 CAAAGGCCTCGTTTGAAAAGTC 58.628 45.455 5.23 0.00 40.31 3.01
283 284 2.640316 AGGCCTCGTTTGAAAAGTCT 57.360 45.000 0.00 0.00 0.00 3.24
284 285 2.222027 AGGCCTCGTTTGAAAAGTCTG 58.778 47.619 0.00 0.00 0.00 3.51
285 286 2.158813 AGGCCTCGTTTGAAAAGTCTGA 60.159 45.455 0.00 0.00 0.00 3.27
286 287 2.814336 GGCCTCGTTTGAAAAGTCTGAT 59.186 45.455 0.00 0.00 0.00 2.90
287 288 3.365364 GGCCTCGTTTGAAAAGTCTGATG 60.365 47.826 0.00 0.00 0.00 3.07
288 289 3.498397 GCCTCGTTTGAAAAGTCTGATGA 59.502 43.478 0.00 0.00 0.00 2.92
289 290 4.611581 GCCTCGTTTGAAAAGTCTGATGAC 60.612 45.833 0.00 0.00 43.22 3.06
290 291 4.511454 CCTCGTTTGAAAAGTCTGATGACA 59.489 41.667 0.00 0.00 45.20 3.58
291 292 5.180117 CCTCGTTTGAAAAGTCTGATGACAT 59.820 40.000 0.00 0.00 45.20 3.06
292 293 6.368791 CCTCGTTTGAAAAGTCTGATGACATA 59.631 38.462 0.00 0.00 45.20 2.29
293 294 7.065085 CCTCGTTTGAAAAGTCTGATGACATAT 59.935 37.037 0.00 0.00 45.20 1.78
294 295 8.322906 TCGTTTGAAAAGTCTGATGACATATT 57.677 30.769 0.00 0.00 45.20 1.28
295 296 8.783093 TCGTTTGAAAAGTCTGATGACATATTT 58.217 29.630 0.00 0.00 45.20 1.40
296 297 9.055248 CGTTTGAAAAGTCTGATGACATATTTC 57.945 33.333 0.00 0.00 45.20 2.17
304 305 9.607333 AAGTCTGATGACATATTTCTATAGGGA 57.393 33.333 0.00 0.00 45.20 4.20
305 306 9.030452 AGTCTGATGACATATTTCTATAGGGAC 57.970 37.037 0.00 0.00 45.20 4.46
306 307 7.971168 GTCTGATGACATATTTCTATAGGGACG 59.029 40.741 0.00 0.00 42.48 4.79
307 308 7.122799 TCTGATGACATATTTCTATAGGGACGG 59.877 40.741 0.00 0.00 0.00 4.79
308 309 6.724441 TGATGACATATTTCTATAGGGACGGT 59.276 38.462 0.00 0.00 0.00 4.83
309 310 7.891712 TGATGACATATTTCTATAGGGACGGTA 59.108 37.037 0.00 0.00 0.00 4.02
310 311 8.840200 ATGACATATTTCTATAGGGACGGTAT 57.160 34.615 0.00 0.00 0.00 2.73
311 312 8.063200 TGACATATTTCTATAGGGACGGTATG 57.937 38.462 0.00 4.11 0.00 2.39
312 313 6.875076 ACATATTTCTATAGGGACGGTATGC 58.125 40.000 0.00 0.00 0.00 3.14
313 314 6.439375 ACATATTTCTATAGGGACGGTATGCA 59.561 38.462 0.00 0.00 0.00 3.96
314 315 7.125811 ACATATTTCTATAGGGACGGTATGCAT 59.874 37.037 3.79 3.79 0.00 3.96
315 316 8.638873 CATATTTCTATAGGGACGGTATGCATA 58.361 37.037 1.16 1.16 0.00 3.14
316 317 6.525578 TTTCTATAGGGACGGTATGCATAG 57.474 41.667 6.67 0.00 0.00 2.23
317 318 5.446260 TCTATAGGGACGGTATGCATAGA 57.554 43.478 6.67 0.00 0.00 1.98
318 319 5.191426 TCTATAGGGACGGTATGCATAGAC 58.809 45.833 6.67 0.00 0.00 2.59
319 320 0.959553 AGGGACGGTATGCATAGACG 59.040 55.000 22.26 22.26 0.00 4.18
320 321 0.956633 GGGACGGTATGCATAGACGA 59.043 55.000 27.71 0.06 0.00 4.20
321 322 1.338973 GGGACGGTATGCATAGACGAA 59.661 52.381 27.71 0.00 0.00 3.85
322 323 2.223876 GGGACGGTATGCATAGACGAAA 60.224 50.000 27.71 0.00 0.00 3.46
323 324 3.450578 GGACGGTATGCATAGACGAAAA 58.549 45.455 27.71 0.00 0.00 2.29
324 325 4.056050 GGACGGTATGCATAGACGAAAAT 58.944 43.478 27.71 12.33 0.00 1.82
325 326 4.510340 GGACGGTATGCATAGACGAAAATT 59.490 41.667 27.71 12.04 0.00 1.82
326 327 5.007332 GGACGGTATGCATAGACGAAAATTT 59.993 40.000 27.71 11.49 0.00 1.82
327 328 6.431198 ACGGTATGCATAGACGAAAATTTT 57.569 33.333 27.71 2.28 0.00 1.82
328 329 6.483687 ACGGTATGCATAGACGAAAATTTTC 58.516 36.000 27.71 19.08 0.00 2.29
329 330 6.315393 ACGGTATGCATAGACGAAAATTTTCT 59.685 34.615 27.71 13.93 35.07 2.52
330 331 7.493320 ACGGTATGCATAGACGAAAATTTTCTA 59.507 33.333 27.71 13.37 35.07 2.10
331 332 8.495949 CGGTATGCATAGACGAAAATTTTCTAT 58.504 33.333 24.53 14.83 33.64 1.98
332 333 9.813080 GGTATGCATAGACGAAAATTTTCTATC 57.187 33.333 24.53 20.86 31.46 2.08
333 334 9.517361 GTATGCATAGACGAAAATTTTCTATCG 57.483 33.333 24.53 16.55 40.90 2.92
334 335 7.764695 TGCATAGACGAAAATTTTCTATCGA 57.235 32.000 24.53 18.37 38.59 3.59
335 336 7.841486 TGCATAGACGAAAATTTTCTATCGAG 58.159 34.615 24.53 17.01 38.59 4.04
336 337 7.491372 TGCATAGACGAAAATTTTCTATCGAGT 59.509 33.333 24.53 15.48 38.59 4.18
337 338 7.999322 GCATAGACGAAAATTTTCTATCGAGTC 59.001 37.037 24.53 21.30 38.59 3.36
338 339 9.239002 CATAGACGAAAATTTTCTATCGAGTCT 57.761 33.333 26.06 26.06 38.59 3.24
339 340 7.513190 AGACGAAAATTTTCTATCGAGTCTG 57.487 36.000 24.08 12.10 38.59 3.51
340 341 6.531948 AGACGAAAATTTTCTATCGAGTCTGG 59.468 38.462 24.08 11.73 38.59 3.86
341 342 5.581085 ACGAAAATTTTCTATCGAGTCTGGG 59.419 40.000 24.53 9.78 38.59 4.45
342 343 5.502544 CGAAAATTTTCTATCGAGTCTGGGC 60.503 44.000 24.53 0.00 37.48 5.36
343 344 4.762289 AATTTTCTATCGAGTCTGGGCT 57.238 40.909 0.00 0.00 0.00 5.19
344 345 5.871396 AATTTTCTATCGAGTCTGGGCTA 57.129 39.130 0.00 0.00 0.00 3.93
345 346 5.871396 ATTTTCTATCGAGTCTGGGCTAA 57.129 39.130 0.00 0.00 0.00 3.09
346 347 4.650754 TTTCTATCGAGTCTGGGCTAAC 57.349 45.455 0.00 0.00 0.00 2.34
347 348 3.292492 TCTATCGAGTCTGGGCTAACA 57.708 47.619 0.00 0.00 0.00 2.41
348 349 3.833732 TCTATCGAGTCTGGGCTAACAT 58.166 45.455 0.00 0.00 0.00 2.71
349 350 4.215908 TCTATCGAGTCTGGGCTAACATT 58.784 43.478 0.00 0.00 0.00 2.71
350 351 3.914426 ATCGAGTCTGGGCTAACATTT 57.086 42.857 0.00 0.00 0.00 2.32
351 352 3.695830 TCGAGTCTGGGCTAACATTTT 57.304 42.857 0.00 0.00 0.00 1.82
352 353 4.015872 TCGAGTCTGGGCTAACATTTTT 57.984 40.909 0.00 0.00 0.00 1.94
422 423 9.933723 AGAAATCAATTTCCTACAAATCAAAGG 57.066 29.630 10.99 0.00 45.52 3.11
423 424 9.154847 GAAATCAATTTCCTACAAATCAAAGGG 57.845 33.333 4.44 0.00 40.10 3.95
424 425 6.036577 TCAATTTCCTACAAATCAAAGGGC 57.963 37.500 0.00 0.00 0.00 5.19
425 426 5.779771 TCAATTTCCTACAAATCAAAGGGCT 59.220 36.000 0.00 0.00 0.00 5.19
426 427 5.921962 ATTTCCTACAAATCAAAGGGCTC 57.078 39.130 0.00 0.00 0.00 4.70
427 428 4.657814 TTCCTACAAATCAAAGGGCTCT 57.342 40.909 0.00 0.00 0.00 4.09
428 429 5.772393 TTCCTACAAATCAAAGGGCTCTA 57.228 39.130 0.00 0.00 0.00 2.43
429 430 5.359194 TCCTACAAATCAAAGGGCTCTAG 57.641 43.478 0.00 0.00 0.00 2.43
430 431 5.030147 TCCTACAAATCAAAGGGCTCTAGA 58.970 41.667 0.00 0.00 0.00 2.43
431 432 5.487488 TCCTACAAATCAAAGGGCTCTAGAA 59.513 40.000 0.00 0.00 0.00 2.10
432 433 6.012858 TCCTACAAATCAAAGGGCTCTAGAAA 60.013 38.462 0.00 0.00 0.00 2.52
433 434 6.659242 CCTACAAATCAAAGGGCTCTAGAAAA 59.341 38.462 0.00 0.00 0.00 2.29
434 435 6.976934 ACAAATCAAAGGGCTCTAGAAAAA 57.023 33.333 0.00 0.00 0.00 1.94
479 480 9.582648 TCCTATAAAATTCCTATAGGCCAAAAC 57.417 33.333 14.50 0.00 44.35 2.43
480 481 9.362151 CCTATAAAATTCCTATAGGCCAAAACA 57.638 33.333 14.50 0.00 40.78 2.83
483 484 6.731292 AAATTCCTATAGGCCAAAACATCC 57.269 37.500 14.50 0.00 34.44 3.51
484 485 3.485463 TCCTATAGGCCAAAACATCCG 57.515 47.619 14.50 0.00 34.44 4.18
485 486 2.105821 TCCTATAGGCCAAAACATCCGG 59.894 50.000 14.50 0.00 34.44 5.14
486 487 2.105821 CCTATAGGCCAAAACATCCGGA 59.894 50.000 6.61 6.61 0.00 5.14
487 488 2.818751 ATAGGCCAAAACATCCGGAA 57.181 45.000 9.01 0.00 0.00 4.30
488 489 2.588464 TAGGCCAAAACATCCGGAAA 57.412 45.000 9.01 0.00 0.00 3.13
489 490 1.937191 AGGCCAAAACATCCGGAAAT 58.063 45.000 9.01 0.00 0.00 2.17
490 491 1.824852 AGGCCAAAACATCCGGAAATC 59.175 47.619 9.01 0.00 0.00 2.17
491 492 1.548269 GGCCAAAACATCCGGAAATCA 59.452 47.619 9.01 0.00 0.00 2.57
492 493 2.168313 GGCCAAAACATCCGGAAATCAT 59.832 45.455 9.01 0.00 0.00 2.45
493 494 3.189285 GCCAAAACATCCGGAAATCATG 58.811 45.455 9.01 3.89 0.00 3.07
494 495 3.784338 CCAAAACATCCGGAAATCATGG 58.216 45.455 9.01 11.43 0.00 3.66
495 496 3.189285 CAAAACATCCGGAAATCATGGC 58.811 45.455 9.01 0.00 0.00 4.40
496 497 2.442236 AACATCCGGAAATCATGGCT 57.558 45.000 9.01 0.00 0.00 4.75
497 498 3.576078 AACATCCGGAAATCATGGCTA 57.424 42.857 9.01 0.00 0.00 3.93
498 499 2.851195 ACATCCGGAAATCATGGCTAC 58.149 47.619 9.01 0.00 0.00 3.58
499 500 2.172505 ACATCCGGAAATCATGGCTACA 59.827 45.455 9.01 0.00 0.00 2.74
500 501 2.620251 TCCGGAAATCATGGCTACAG 57.380 50.000 0.00 0.00 0.00 2.74
501 502 0.947244 CCGGAAATCATGGCTACAGC 59.053 55.000 0.00 0.00 41.14 4.40
520 521 8.893727 GCTACAGCCCATAAATAGTAATAATGG 58.106 37.037 0.00 0.00 37.44 3.16
521 522 9.959721 CTACAGCCCATAAATAGTAATAATGGT 57.040 33.333 0.00 0.00 36.21 3.55
523 524 9.654919 ACAGCCCATAAATAGTAATAATGGTTT 57.345 29.630 0.00 0.00 36.21 3.27
525 526 9.309224 AGCCCATAAATAGTAATAATGGTTTCC 57.691 33.333 0.00 0.00 36.21 3.13
526 527 9.084533 GCCCATAAATAGTAATAATGGTTTCCA 57.915 33.333 0.00 0.00 36.21 3.53
530 531 9.875708 ATAAATAGTAATAATGGTTTCCAGCCA 57.124 29.630 0.00 0.00 36.75 4.75
531 532 8.602472 AAATAGTAATAATGGTTTCCAGCCAA 57.398 30.769 0.00 0.00 39.72 4.52
532 533 8.602472 AATAGTAATAATGGTTTCCAGCCAAA 57.398 30.769 0.00 0.00 39.72 3.28
533 534 6.926630 AGTAATAATGGTTTCCAGCCAAAA 57.073 33.333 0.00 0.00 39.72 2.44
534 535 7.309770 AGTAATAATGGTTTCCAGCCAAAAA 57.690 32.000 0.00 0.00 39.72 1.94
552 553 2.038387 AAATGTAGGGCGTGCTTAGG 57.962 50.000 0.00 0.00 0.00 2.69
553 554 1.200519 AATGTAGGGCGTGCTTAGGA 58.799 50.000 0.00 0.00 0.00 2.94
554 555 0.464452 ATGTAGGGCGTGCTTAGGAC 59.536 55.000 0.00 0.00 0.00 3.85
555 556 0.613853 TGTAGGGCGTGCTTAGGACT 60.614 55.000 1.88 0.00 0.00 3.85
556 557 0.102663 GTAGGGCGTGCTTAGGACTC 59.897 60.000 1.88 0.00 0.00 3.36
557 558 0.323999 TAGGGCGTGCTTAGGACTCA 60.324 55.000 1.88 0.00 0.00 3.41
558 559 0.978146 AGGGCGTGCTTAGGACTCAT 60.978 55.000 1.88 0.00 0.00 2.90
559 560 0.107654 GGGCGTGCTTAGGACTCATT 60.108 55.000 1.88 0.00 0.00 2.57
560 561 1.679032 GGGCGTGCTTAGGACTCATTT 60.679 52.381 1.88 0.00 0.00 2.32
561 562 1.398390 GGCGTGCTTAGGACTCATTTG 59.602 52.381 1.88 0.00 0.00 2.32
562 563 2.346803 GCGTGCTTAGGACTCATTTGA 58.653 47.619 1.88 0.00 0.00 2.69
563 564 2.094417 GCGTGCTTAGGACTCATTTGAC 59.906 50.000 1.88 0.00 0.00 3.18
564 565 2.673368 CGTGCTTAGGACTCATTTGACC 59.327 50.000 1.88 0.00 0.00 4.02
565 566 3.674997 GTGCTTAGGACTCATTTGACCA 58.325 45.455 0.00 0.00 0.00 4.02
566 567 4.072131 GTGCTTAGGACTCATTTGACCAA 58.928 43.478 0.00 0.00 0.00 3.67
567 568 4.154918 GTGCTTAGGACTCATTTGACCAAG 59.845 45.833 0.00 0.00 0.00 3.61
568 569 4.041567 TGCTTAGGACTCATTTGACCAAGA 59.958 41.667 0.00 0.00 0.00 3.02
569 570 5.189180 GCTTAGGACTCATTTGACCAAGAT 58.811 41.667 0.00 0.00 0.00 2.40
570 571 5.649831 GCTTAGGACTCATTTGACCAAGATT 59.350 40.000 0.00 0.00 0.00 2.40
571 572 6.151817 GCTTAGGACTCATTTGACCAAGATTT 59.848 38.462 0.00 0.00 0.00 2.17
572 573 7.336931 GCTTAGGACTCATTTGACCAAGATTTA 59.663 37.037 0.00 0.00 0.00 1.40
573 574 9.231297 CTTAGGACTCATTTGACCAAGATTTAA 57.769 33.333 0.00 0.00 0.00 1.52
574 575 7.454260 AGGACTCATTTGACCAAGATTTAAC 57.546 36.000 0.00 0.00 0.00 2.01
575 576 6.434340 AGGACTCATTTGACCAAGATTTAACC 59.566 38.462 0.00 0.00 0.00 2.85
576 577 6.208599 GGACTCATTTGACCAAGATTTAACCA 59.791 38.462 0.00 0.00 0.00 3.67
577 578 7.255801 GGACTCATTTGACCAAGATTTAACCAA 60.256 37.037 0.00 0.00 0.00 3.67
578 579 7.661040 ACTCATTTGACCAAGATTTAACCAAG 58.339 34.615 0.00 0.00 0.00 3.61
579 580 7.287696 ACTCATTTGACCAAGATTTAACCAAGT 59.712 33.333 0.00 0.00 0.00 3.16
580 581 7.657336 TCATTTGACCAAGATTTAACCAAGTC 58.343 34.615 0.00 0.00 0.00 3.01
581 582 7.505585 TCATTTGACCAAGATTTAACCAAGTCT 59.494 33.333 0.00 0.00 32.49 3.24
582 583 6.877611 TTGACCAAGATTTAACCAAGTCTC 57.122 37.500 0.00 0.00 30.05 3.36
583 584 4.994852 TGACCAAGATTTAACCAAGTCTCG 59.005 41.667 0.00 0.00 30.05 4.04
584 585 5.221561 TGACCAAGATTTAACCAAGTCTCGA 60.222 40.000 0.00 0.00 30.05 4.04
585 586 5.805728 ACCAAGATTTAACCAAGTCTCGAT 58.194 37.500 0.00 0.00 30.05 3.59
586 587 5.875359 ACCAAGATTTAACCAAGTCTCGATC 59.125 40.000 0.00 0.00 30.05 3.69
587 588 5.005779 CCAAGATTTAACCAAGTCTCGATCG 59.994 44.000 9.36 9.36 30.05 3.69
588 589 5.578005 AGATTTAACCAAGTCTCGATCGA 57.422 39.130 18.32 18.32 0.00 3.59
589 590 5.583495 AGATTTAACCAAGTCTCGATCGAG 58.417 41.667 34.20 34.20 43.21 4.04
590 591 4.778534 TTTAACCAAGTCTCGATCGAGT 57.221 40.909 36.68 21.37 42.49 4.18
591 592 2.638556 AACCAAGTCTCGATCGAGTG 57.361 50.000 36.68 28.58 42.49 3.51
592 593 1.822506 ACCAAGTCTCGATCGAGTGA 58.177 50.000 36.68 21.54 42.49 3.41
593 594 1.469308 ACCAAGTCTCGATCGAGTGAC 59.531 52.381 36.68 29.55 42.49 3.67
594 595 1.468914 CCAAGTCTCGATCGAGTGACA 59.531 52.381 36.68 20.34 42.49 3.58
595 596 2.098280 CCAAGTCTCGATCGAGTGACAT 59.902 50.000 36.68 22.76 42.49 3.06
596 597 3.104470 CAAGTCTCGATCGAGTGACATG 58.896 50.000 36.68 28.03 42.49 3.21
597 598 2.633488 AGTCTCGATCGAGTGACATGA 58.367 47.619 36.68 18.81 42.49 3.07
598 599 2.353269 AGTCTCGATCGAGTGACATGAC 59.647 50.000 36.68 27.10 42.49 3.06
599 600 2.096013 GTCTCGATCGAGTGACATGACA 59.904 50.000 36.68 17.27 42.49 3.58
600 601 2.945668 TCTCGATCGAGTGACATGACAT 59.054 45.455 36.68 0.00 42.49 3.06
601 602 3.041492 CTCGATCGAGTGACATGACATG 58.959 50.000 32.23 14.02 37.47 3.21
602 603 1.520174 CGATCGAGTGACATGACATGC 59.480 52.381 15.49 8.84 0.00 4.06
603 604 2.543641 GATCGAGTGACATGACATGCA 58.456 47.619 15.49 11.25 0.00 3.96
604 605 2.453983 TCGAGTGACATGACATGCAA 57.546 45.000 15.49 0.88 0.00 4.08
605 606 2.765122 TCGAGTGACATGACATGCAAA 58.235 42.857 15.49 0.00 0.00 3.68
606 607 3.137533 TCGAGTGACATGACATGCAAAA 58.862 40.909 15.49 0.00 0.00 2.44
607 608 3.563390 TCGAGTGACATGACATGCAAAAA 59.437 39.130 15.49 0.00 0.00 1.94
662 663 8.217131 CATGGATTTTCATGTAAGATCTCACA 57.783 34.615 0.00 0.00 39.56 3.58
663 664 7.854557 TGGATTTTCATGTAAGATCTCACAG 57.145 36.000 4.70 0.00 31.03 3.66
664 665 7.623630 TGGATTTTCATGTAAGATCTCACAGA 58.376 34.615 4.70 0.00 31.03 3.41
665 666 8.270030 TGGATTTTCATGTAAGATCTCACAGAT 58.730 33.333 4.70 0.00 37.73 2.90
666 667 9.770097 GGATTTTCATGTAAGATCTCACAGATA 57.230 33.333 4.70 0.00 34.53 1.98
670 671 7.213216 TCATGTAAGATCTCACAGATAGAGC 57.787 40.000 4.70 0.00 34.53 4.09
671 672 5.681337 TGTAAGATCTCACAGATAGAGCG 57.319 43.478 0.00 0.00 34.53 5.03
672 673 5.368989 TGTAAGATCTCACAGATAGAGCGA 58.631 41.667 0.00 0.00 34.53 4.93
673 674 5.468409 TGTAAGATCTCACAGATAGAGCGAG 59.532 44.000 0.00 0.00 34.53 5.03
674 675 4.085357 AGATCTCACAGATAGAGCGAGT 57.915 45.455 0.00 0.00 34.53 4.18
675 676 4.065088 AGATCTCACAGATAGAGCGAGTC 58.935 47.826 0.00 0.00 34.53 3.36
676 677 2.205911 TCTCACAGATAGAGCGAGTCG 58.794 52.381 8.54 8.54 33.15 4.18
677 678 2.159085 TCTCACAGATAGAGCGAGTCGA 60.159 50.000 18.61 0.00 33.15 4.20
678 679 1.934525 TCACAGATAGAGCGAGTCGAC 59.065 52.381 18.61 7.70 0.00 4.20
679 680 1.937223 CACAGATAGAGCGAGTCGACT 59.063 52.381 20.18 20.18 0.00 4.18
680 681 1.937223 ACAGATAGAGCGAGTCGACTG 59.063 52.381 25.58 16.03 33.68 3.51
681 682 2.205911 CAGATAGAGCGAGTCGACTGA 58.794 52.381 25.58 0.97 31.10 3.41
682 683 2.220824 CAGATAGAGCGAGTCGACTGAG 59.779 54.545 25.58 17.51 31.10 3.35
683 684 2.101750 AGATAGAGCGAGTCGACTGAGA 59.898 50.000 25.58 2.12 0.00 3.27
684 685 1.642728 TAGAGCGAGTCGACTGAGAC 58.357 55.000 25.58 11.66 41.23 3.36
694 695 3.735121 GTCGACTGAGACTTAACGAGAC 58.265 50.000 8.70 0.00 38.09 3.36
695 696 3.186001 GTCGACTGAGACTTAACGAGACA 59.814 47.826 8.70 0.00 38.09 3.41
696 697 3.432592 TCGACTGAGACTTAACGAGACAG 59.567 47.826 0.00 0.00 34.03 3.51
697 698 3.432592 CGACTGAGACTTAACGAGACAGA 59.567 47.826 0.00 0.00 33.06 3.41
698 699 4.083961 CGACTGAGACTTAACGAGACAGAA 60.084 45.833 0.00 0.00 33.06 3.02
699 700 5.560375 CGACTGAGACTTAACGAGACAGAAA 60.560 44.000 0.00 0.00 33.06 2.52
700 701 6.145338 ACTGAGACTTAACGAGACAGAAAA 57.855 37.500 0.00 0.00 33.06 2.29
701 702 6.570692 ACTGAGACTTAACGAGACAGAAAAA 58.429 36.000 0.00 0.00 33.06 1.94
752 753 1.886542 CACCTTTCCTTTTCCTTCCCG 59.113 52.381 0.00 0.00 0.00 5.14
753 754 0.888619 CCTTTCCTTTTCCTTCCCGC 59.111 55.000 0.00 0.00 0.00 6.13
757 758 0.604511 TCCTTTTCCTTCCCGCGTTC 60.605 55.000 4.92 0.00 0.00 3.95
765 1163 2.458006 CTTCCCGCGTTCCACTTTGC 62.458 60.000 4.92 0.00 0.00 3.68
781 1179 3.673484 GCCAACATGCAGGTGCGT 61.673 61.111 4.03 0.00 45.83 5.24
794 1192 4.697756 TGCGTGCGCTAGGCCTTT 62.698 61.111 12.58 0.00 42.61 3.11
812 1210 5.650703 GGCCTTTAATTTAGCTTCCACACTA 59.349 40.000 0.00 0.00 0.00 2.74
825 1223 1.203523 CCACACTAGAGACTGGACTGC 59.796 57.143 0.00 0.00 0.00 4.40
826 1224 1.203523 CACACTAGAGACTGGACTGCC 59.796 57.143 0.00 0.00 0.00 4.85
827 1225 0.820871 CACTAGAGACTGGACTGCCC 59.179 60.000 0.00 0.00 0.00 5.36
828 1226 0.324830 ACTAGAGACTGGACTGCCCC 60.325 60.000 0.00 0.00 0.00 5.80
829 1227 1.379977 TAGAGACTGGACTGCCCCG 60.380 63.158 0.00 0.00 0.00 5.73
830 1228 4.459089 GAGACTGGACTGCCCCGC 62.459 72.222 0.00 0.00 0.00 6.13
870 1268 1.572085 CTTCCTCGCCACTGCACTTG 61.572 60.000 0.00 0.00 37.32 3.16
887 1288 4.137543 CACTTGAGAGCTACAAAACCCTT 58.862 43.478 7.14 0.00 0.00 3.95
906 1309 2.992124 TCTTCTTCCCGACACAAACA 57.008 45.000 0.00 0.00 0.00 2.83
911 1314 4.074627 TCTTCCCGACACAAACATACAA 57.925 40.909 0.00 0.00 0.00 2.41
917 1320 3.124636 CCGACACAAACATACAACTAGCC 59.875 47.826 0.00 0.00 0.00 3.93
948 1351 1.135333 GTGCACCTACCTCTCTACTGC 59.865 57.143 5.22 0.00 0.00 4.40
952 1355 1.342175 ACCTACCTCTCTACTGCCCAC 60.342 57.143 0.00 0.00 0.00 4.61
955 1358 1.270907 ACCTCTCTACTGCCCACTTG 58.729 55.000 0.00 0.00 0.00 3.16
956 1359 1.270907 CCTCTCTACTGCCCACTTGT 58.729 55.000 0.00 0.00 0.00 3.16
957 1360 1.625818 CCTCTCTACTGCCCACTTGTT 59.374 52.381 0.00 0.00 0.00 2.83
958 1361 2.613977 CCTCTCTACTGCCCACTTGTTG 60.614 54.545 0.00 0.00 0.00 3.33
959 1362 1.160137 CTCTACTGCCCACTTGTTGC 58.840 55.000 0.00 0.00 0.00 4.17
960 1363 0.250727 TCTACTGCCCACTTGTTGCC 60.251 55.000 0.00 0.00 0.00 4.52
961 1364 1.228429 TACTGCCCACTTGTTGCCC 60.228 57.895 0.00 0.00 0.00 5.36
962 1365 3.673484 CTGCCCACTTGTTGCCCG 61.673 66.667 0.00 0.00 0.00 6.13
965 1368 4.278513 CCCACTTGTTGCCCGGGA 62.279 66.667 29.31 6.60 39.44 5.14
966 1369 2.672996 CCACTTGTTGCCCGGGAG 60.673 66.667 29.31 15.50 0.00 4.30
976 1379 3.036429 GCCCGGGAGATCAGCAAGT 62.036 63.158 29.31 0.00 0.00 3.16
978 1381 0.830648 CCCGGGAGATCAGCAAGTTA 59.169 55.000 18.48 0.00 0.00 2.24
980 1383 2.158755 CCCGGGAGATCAGCAAGTTAAT 60.159 50.000 18.48 0.00 0.00 1.40
1182 1596 2.125552 CTGATCGAGCGCAACCCA 60.126 61.111 11.47 0.00 0.00 4.51
1218 1632 2.050934 GTACCGCTTCCTCCTCCGT 61.051 63.158 0.00 0.00 0.00 4.69
1428 1842 1.078426 CGTGTCCATGTTCTCCCCC 60.078 63.158 0.00 0.00 0.00 5.40
1494 1908 2.125269 GACGTGGCCGCCTACAAT 60.125 61.111 11.56 0.00 37.70 2.71
1730 2147 3.805267 CGCCAAGATGGAGCTCAC 58.195 61.111 17.19 5.63 40.96 3.51
2370 2793 1.659335 GTGGCTCAACGACGTCGAA 60.659 57.895 41.52 24.64 43.02 3.71
2386 2809 1.374252 GAAGGCGACACCGTCATGT 60.374 57.895 0.00 0.00 45.49 3.21
2388 2811 0.949105 AAGGCGACACCGTCATGTTC 60.949 55.000 0.00 0.00 44.02 3.18
2395 2818 3.001070 CGACACCGTCATGTTCTAATTCG 60.001 47.826 0.00 0.00 31.24 3.34
2397 2820 4.312443 ACACCGTCATGTTCTAATTCGTT 58.688 39.130 0.00 0.00 0.00 3.85
2398 2821 4.387862 ACACCGTCATGTTCTAATTCGTTC 59.612 41.667 0.00 0.00 0.00 3.95
2410 2833 0.530744 ATTCGTTCCTCGCTGCTACA 59.469 50.000 0.00 0.00 39.67 2.74
2411 2834 0.388134 TTCGTTCCTCGCTGCTACAC 60.388 55.000 0.00 0.00 39.67 2.90
2412 2835 2.152699 CGTTCCTCGCTGCTACACG 61.153 63.158 0.00 0.00 0.00 4.49
2413 2836 1.805945 GTTCCTCGCTGCTACACGG 60.806 63.158 0.00 0.00 0.00 4.94
2428 2859 4.687215 CGGCCGGCCATCGATCAT 62.687 66.667 42.78 0.00 42.43 2.45
2452 2883 1.993391 GATCGGGGAAGGTGGTGGA 60.993 63.158 0.00 0.00 0.00 4.02
2453 2884 1.972660 GATCGGGGAAGGTGGTGGAG 61.973 65.000 0.00 0.00 0.00 3.86
2454 2885 2.765705 ATCGGGGAAGGTGGTGGAGT 62.766 60.000 0.00 0.00 0.00 3.85
2455 2886 1.611261 CGGGGAAGGTGGTGGAGTA 60.611 63.158 0.00 0.00 0.00 2.59
2456 2887 1.614241 CGGGGAAGGTGGTGGAGTAG 61.614 65.000 0.00 0.00 0.00 2.57
2457 2888 0.546988 GGGGAAGGTGGTGGAGTAGT 60.547 60.000 0.00 0.00 0.00 2.73
2458 2889 1.273438 GGGGAAGGTGGTGGAGTAGTA 60.273 57.143 0.00 0.00 0.00 1.82
2459 2890 2.628829 GGGGAAGGTGGTGGAGTAGTAT 60.629 54.545 0.00 0.00 0.00 2.12
2460 2891 3.374540 GGGGAAGGTGGTGGAGTAGTATA 60.375 52.174 0.00 0.00 0.00 1.47
2461 2892 3.640498 GGGAAGGTGGTGGAGTAGTATAC 59.360 52.174 0.00 0.00 43.47 1.47
2462 2893 4.284178 GGAAGGTGGTGGAGTAGTATACA 58.716 47.826 5.50 0.00 46.26 2.29
2463 2894 4.099113 GGAAGGTGGTGGAGTAGTATACAC 59.901 50.000 5.50 1.76 46.26 2.90
2472 2903 9.791801 TGGTGGAGTAGTATACACGTAATAATA 57.208 33.333 5.50 0.00 46.26 0.98
2497 2928 8.428186 AGTTAATTAAAATCCATTCGAGCGTA 57.572 30.769 0.00 0.00 0.00 4.42
2498 2929 8.333186 AGTTAATTAAAATCCATTCGAGCGTAC 58.667 33.333 0.00 0.00 0.00 3.67
2500 2931 2.288961 AAATCCATTCGAGCGTACGT 57.711 45.000 17.90 3.43 34.70 3.57
2502 2933 0.454600 ATCCATTCGAGCGTACGTGT 59.545 50.000 17.90 4.38 34.70 4.49
2503 2934 0.455464 TCCATTCGAGCGTACGTGTG 60.455 55.000 17.90 6.78 34.70 3.82
2504 2935 1.410737 CCATTCGAGCGTACGTGTGG 61.411 60.000 17.90 11.73 34.78 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.516700 AGGAGGCAAATTCAATTCCAAGG 59.483 43.478 0.00 0.00 0.00 3.61
6 7 4.813750 AGGAGGCAAATTCAATTCCAAG 57.186 40.909 0.00 0.00 0.00 3.61
7 8 6.678568 TTTAGGAGGCAAATTCAATTCCAA 57.321 33.333 0.00 0.00 0.00 3.53
8 9 6.872585 ATTTAGGAGGCAAATTCAATTCCA 57.127 33.333 0.00 0.00 0.00 3.53
9 10 8.011844 AGTATTTAGGAGGCAAATTCAATTCC 57.988 34.615 0.00 0.00 0.00 3.01
10 11 9.875691 AAAGTATTTAGGAGGCAAATTCAATTC 57.124 29.630 0.00 0.00 35.86 2.17
14 15 8.466798 GCTAAAAGTATTTAGGAGGCAAATTCA 58.533 33.333 9.62 0.00 45.37 2.57
15 16 7.644157 CGCTAAAAGTATTTAGGAGGCAAATTC 59.356 37.037 9.62 0.00 45.37 2.17
16 17 7.416326 CCGCTAAAAGTATTTAGGAGGCAAATT 60.416 37.037 9.62 0.00 45.37 1.82
17 18 6.039382 CCGCTAAAAGTATTTAGGAGGCAAAT 59.961 38.462 9.62 0.00 45.37 2.32
18 19 5.355910 CCGCTAAAAGTATTTAGGAGGCAAA 59.644 40.000 9.62 0.00 45.37 3.68
19 20 4.879545 CCGCTAAAAGTATTTAGGAGGCAA 59.120 41.667 9.62 0.00 45.37 4.52
20 21 4.448210 CCGCTAAAAGTATTTAGGAGGCA 58.552 43.478 9.62 0.00 45.37 4.75
21 22 3.250280 GCCGCTAAAAGTATTTAGGAGGC 59.750 47.826 9.62 8.97 45.37 4.70
22 23 3.493503 CGCCGCTAAAAGTATTTAGGAGG 59.506 47.826 9.62 4.33 45.37 4.30
23 24 3.493503 CCGCCGCTAAAAGTATTTAGGAG 59.506 47.826 9.62 0.00 45.37 3.69
24 25 3.460103 CCGCCGCTAAAAGTATTTAGGA 58.540 45.455 9.62 0.00 45.37 2.94
25 26 2.546789 CCCGCCGCTAAAAGTATTTAGG 59.453 50.000 9.62 0.00 45.37 2.69
27 28 1.941975 GCCCGCCGCTAAAAGTATTTA 59.058 47.619 0.00 0.00 37.28 1.40
28 29 0.736636 GCCCGCCGCTAAAAGTATTT 59.263 50.000 0.00 0.00 42.41 1.40
29 30 1.433837 CGCCCGCCGCTAAAAGTATT 61.434 55.000 0.00 0.00 34.21 1.89
30 31 1.885850 CGCCCGCCGCTAAAAGTAT 60.886 57.895 0.00 0.00 34.21 2.12
31 32 2.509786 CGCCCGCCGCTAAAAGTA 60.510 61.111 0.00 0.00 34.21 2.24
32 33 4.382320 TCGCCCGCCGCTAAAAGT 62.382 61.111 0.00 0.00 36.73 2.66
33 34 2.894240 TAGTCGCCCGCCGCTAAAAG 62.894 60.000 0.00 0.00 36.73 2.27
34 35 2.504163 TTAGTCGCCCGCCGCTAAAA 62.504 55.000 0.00 0.00 34.79 1.52
35 36 2.504163 TTTAGTCGCCCGCCGCTAAA 62.504 55.000 13.50 13.50 40.13 1.85
36 37 2.894240 CTTTAGTCGCCCGCCGCTAA 62.894 60.000 0.00 6.54 35.40 3.09
37 38 3.420214 CTTTAGTCGCCCGCCGCTA 62.420 63.158 0.00 0.00 36.73 4.26
38 39 4.814294 CTTTAGTCGCCCGCCGCT 62.814 66.667 0.00 0.00 36.73 5.52
40 41 3.652539 TTCCTTTAGTCGCCCGCCG 62.653 63.158 0.00 0.00 38.61 6.46
41 42 0.746923 ATTTCCTTTAGTCGCCCGCC 60.747 55.000 0.00 0.00 0.00 6.13
42 43 0.377203 CATTTCCTTTAGTCGCCCGC 59.623 55.000 0.00 0.00 0.00 6.13
43 44 2.018542 TCATTTCCTTTAGTCGCCCG 57.981 50.000 0.00 0.00 0.00 6.13
44 45 4.217767 AGTTTTCATTTCCTTTAGTCGCCC 59.782 41.667 0.00 0.00 0.00 6.13
45 46 5.154222 CAGTTTTCATTTCCTTTAGTCGCC 58.846 41.667 0.00 0.00 0.00 5.54
46 47 5.154222 CCAGTTTTCATTTCCTTTAGTCGC 58.846 41.667 0.00 0.00 0.00 5.19
47 48 5.240844 ACCCAGTTTTCATTTCCTTTAGTCG 59.759 40.000 0.00 0.00 0.00 4.18
48 49 6.650427 ACCCAGTTTTCATTTCCTTTAGTC 57.350 37.500 0.00 0.00 0.00 2.59
49 50 6.492429 GGTACCCAGTTTTCATTTCCTTTAGT 59.508 38.462 0.00 0.00 0.00 2.24
50 51 6.719829 AGGTACCCAGTTTTCATTTCCTTTAG 59.280 38.462 8.74 0.00 0.00 1.85
51 52 6.492087 CAGGTACCCAGTTTTCATTTCCTTTA 59.508 38.462 8.74 0.00 0.00 1.85
52 53 5.304357 CAGGTACCCAGTTTTCATTTCCTTT 59.696 40.000 8.74 0.00 0.00 3.11
53 54 4.832823 CAGGTACCCAGTTTTCATTTCCTT 59.167 41.667 8.74 0.00 0.00 3.36
54 55 4.105697 TCAGGTACCCAGTTTTCATTTCCT 59.894 41.667 8.74 0.00 0.00 3.36
55 56 4.403734 TCAGGTACCCAGTTTTCATTTCC 58.596 43.478 8.74 0.00 0.00 3.13
56 57 7.696992 TTATCAGGTACCCAGTTTTCATTTC 57.303 36.000 8.74 0.00 0.00 2.17
57 58 7.893302 TGATTATCAGGTACCCAGTTTTCATTT 59.107 33.333 8.74 0.00 0.00 2.32
58 59 7.339466 GTGATTATCAGGTACCCAGTTTTCATT 59.661 37.037 8.74 0.00 0.00 2.57
59 60 6.828785 GTGATTATCAGGTACCCAGTTTTCAT 59.171 38.462 8.74 0.00 0.00 2.57
60 61 6.177610 GTGATTATCAGGTACCCAGTTTTCA 58.822 40.000 8.74 3.19 0.00 2.69
61 62 6.177610 TGTGATTATCAGGTACCCAGTTTTC 58.822 40.000 8.74 0.37 0.00 2.29
62 63 6.134535 TGTGATTATCAGGTACCCAGTTTT 57.865 37.500 8.74 0.00 0.00 2.43
63 64 5.250774 ACTGTGATTATCAGGTACCCAGTTT 59.749 40.000 8.74 0.00 37.25 2.66
64 65 4.783227 ACTGTGATTATCAGGTACCCAGTT 59.217 41.667 8.74 0.00 37.25 3.16
65 66 4.362677 ACTGTGATTATCAGGTACCCAGT 58.637 43.478 8.74 8.50 37.25 4.00
66 67 4.202264 GGACTGTGATTATCAGGTACCCAG 60.202 50.000 8.74 7.83 37.25 4.45
67 68 3.709653 GGACTGTGATTATCAGGTACCCA 59.290 47.826 8.74 0.00 37.25 4.51
68 69 3.243771 CGGACTGTGATTATCAGGTACCC 60.244 52.174 8.74 0.00 37.25 3.69
69 70 3.383825 ACGGACTGTGATTATCAGGTACC 59.616 47.826 2.73 2.73 37.25 3.34
70 71 4.650754 ACGGACTGTGATTATCAGGTAC 57.349 45.455 0.00 0.00 37.25 3.34
83 84 0.537188 CAAGGGATAGCACGGACTGT 59.463 55.000 0.00 0.00 0.00 3.55
84 85 0.537188 ACAAGGGATAGCACGGACTG 59.463 55.000 0.00 0.00 0.00 3.51
85 86 0.537188 CACAAGGGATAGCACGGACT 59.463 55.000 0.00 0.00 0.00 3.85
86 87 0.535335 TCACAAGGGATAGCACGGAC 59.465 55.000 0.00 0.00 0.00 4.79
87 88 0.535335 GTCACAAGGGATAGCACGGA 59.465 55.000 0.00 0.00 0.00 4.69
88 89 0.249120 TGTCACAAGGGATAGCACGG 59.751 55.000 0.00 0.00 0.00 4.94
89 90 2.093306 TTGTCACAAGGGATAGCACG 57.907 50.000 0.00 0.00 0.00 5.34
90 91 4.702131 AGAATTTGTCACAAGGGATAGCAC 59.298 41.667 0.00 0.00 0.00 4.40
91 92 4.701651 CAGAATTTGTCACAAGGGATAGCA 59.298 41.667 0.00 0.00 0.00 3.49
92 93 4.943705 TCAGAATTTGTCACAAGGGATAGC 59.056 41.667 0.00 0.00 0.00 2.97
93 94 7.478322 CAATCAGAATTTGTCACAAGGGATAG 58.522 38.462 0.00 0.00 0.00 2.08
94 95 6.127647 GCAATCAGAATTTGTCACAAGGGATA 60.128 38.462 0.00 0.00 0.00 2.59
95 96 5.337009 GCAATCAGAATTTGTCACAAGGGAT 60.337 40.000 0.00 0.00 0.00 3.85
96 97 4.022068 GCAATCAGAATTTGTCACAAGGGA 60.022 41.667 0.00 0.00 0.00 4.20
97 98 4.240096 GCAATCAGAATTTGTCACAAGGG 58.760 43.478 0.00 0.00 0.00 3.95
98 99 4.873817 TGCAATCAGAATTTGTCACAAGG 58.126 39.130 0.00 0.00 0.00 3.61
99 100 5.176223 GGTTGCAATCAGAATTTGTCACAAG 59.824 40.000 4.39 0.00 0.00 3.16
100 101 5.049167 GGTTGCAATCAGAATTTGTCACAA 58.951 37.500 4.39 0.00 0.00 3.33
101 102 4.099113 TGGTTGCAATCAGAATTTGTCACA 59.901 37.500 8.71 0.00 0.00 3.58
102 103 4.619973 TGGTTGCAATCAGAATTTGTCAC 58.380 39.130 8.71 0.00 0.00 3.67
103 104 4.933505 TGGTTGCAATCAGAATTTGTCA 57.066 36.364 8.71 0.00 0.00 3.58
104 105 6.293027 CCTTTTGGTTGCAATCAGAATTTGTC 60.293 38.462 15.32 0.00 34.07 3.18
105 106 5.528320 CCTTTTGGTTGCAATCAGAATTTGT 59.472 36.000 15.32 0.00 34.07 2.83
106 107 5.561339 GCCTTTTGGTTGCAATCAGAATTTG 60.561 40.000 15.32 8.89 42.99 2.32
107 108 4.516321 GCCTTTTGGTTGCAATCAGAATTT 59.484 37.500 15.32 0.00 42.99 1.82
108 109 4.067192 GCCTTTTGGTTGCAATCAGAATT 58.933 39.130 15.32 0.00 42.99 2.17
109 110 3.325716 AGCCTTTTGGTTGCAATCAGAAT 59.674 39.130 15.32 0.00 42.99 2.40
110 111 2.699846 AGCCTTTTGGTTGCAATCAGAA 59.300 40.909 13.02 13.75 42.99 3.02
111 112 2.036217 CAGCCTTTTGGTTGCAATCAGA 59.964 45.455 13.02 5.54 43.66 3.27
112 113 2.409975 CAGCCTTTTGGTTGCAATCAG 58.590 47.619 13.02 2.25 43.66 2.90
113 114 2.529780 CAGCCTTTTGGTTGCAATCA 57.470 45.000 8.71 8.71 43.66 2.57
120 121 0.971386 CATCCTGCAGCCTTTTGGTT 59.029 50.000 8.66 0.00 42.99 3.67
121 122 1.538687 GCATCCTGCAGCCTTTTGGT 61.539 55.000 8.66 0.00 44.26 3.67
122 123 1.217244 GCATCCTGCAGCCTTTTGG 59.783 57.895 8.66 0.00 44.26 3.28
123 124 4.904466 GCATCCTGCAGCCTTTTG 57.096 55.556 8.66 1.84 44.26 2.44
132 133 1.404391 CTTCAGACATTGGCATCCTGC 59.596 52.381 0.00 0.00 44.08 4.85
133 134 1.404391 GCTTCAGACATTGGCATCCTG 59.596 52.381 0.00 0.00 0.00 3.86
134 135 1.284198 AGCTTCAGACATTGGCATCCT 59.716 47.619 0.00 0.00 0.00 3.24
135 136 1.404391 CAGCTTCAGACATTGGCATCC 59.596 52.381 0.00 0.00 0.00 3.51
136 137 1.202268 GCAGCTTCAGACATTGGCATC 60.202 52.381 0.00 0.00 0.00 3.91
137 138 0.815734 GCAGCTTCAGACATTGGCAT 59.184 50.000 0.00 0.00 0.00 4.40
138 139 0.251033 AGCAGCTTCAGACATTGGCA 60.251 50.000 0.00 0.00 0.00 4.92
139 140 0.450983 GAGCAGCTTCAGACATTGGC 59.549 55.000 0.00 0.00 0.00 4.52
140 141 1.817357 TGAGCAGCTTCAGACATTGG 58.183 50.000 0.00 0.00 0.00 3.16
141 142 4.436242 AAATGAGCAGCTTCAGACATTG 57.564 40.909 6.97 0.00 0.00 2.82
142 143 5.464030 AAAAATGAGCAGCTTCAGACATT 57.536 34.783 0.00 0.00 0.00 2.71
161 162 6.096695 GCCAAGCCGTTTTATCATCTAAAAA 58.903 36.000 0.00 0.00 0.00 1.94
162 163 5.393678 GGCCAAGCCGTTTTATCATCTAAAA 60.394 40.000 0.00 0.00 39.62 1.52
163 164 4.097286 GGCCAAGCCGTTTTATCATCTAAA 59.903 41.667 0.00 0.00 39.62 1.85
164 165 3.630312 GGCCAAGCCGTTTTATCATCTAA 59.370 43.478 0.00 0.00 39.62 2.10
165 166 3.211045 GGCCAAGCCGTTTTATCATCTA 58.789 45.455 0.00 0.00 39.62 1.98
166 167 2.024414 GGCCAAGCCGTTTTATCATCT 58.976 47.619 0.00 0.00 39.62 2.90
167 168 2.492019 GGCCAAGCCGTTTTATCATC 57.508 50.000 0.00 0.00 39.62 2.92
179 180 0.451783 CGTTGACCAATAGGCCAAGC 59.548 55.000 5.01 0.00 37.99 4.01
180 181 0.451783 GCGTTGACCAATAGGCCAAG 59.548 55.000 5.01 0.00 37.99 3.61
181 182 0.037590 AGCGTTGACCAATAGGCCAA 59.962 50.000 5.01 0.00 34.64 4.52
182 183 0.392461 GAGCGTTGACCAATAGGCCA 60.392 55.000 5.01 0.00 39.06 5.36
183 184 0.107654 AGAGCGTTGACCAATAGGCC 60.108 55.000 0.00 0.00 39.06 5.19
184 185 1.009829 CAGAGCGTTGACCAATAGGC 58.990 55.000 0.00 0.00 39.06 3.93
185 186 1.009829 GCAGAGCGTTGACCAATAGG 58.990 55.000 0.00 0.00 42.21 2.57
186 187 1.662629 CAGCAGAGCGTTGACCAATAG 59.337 52.381 0.00 0.00 0.00 1.73
187 188 1.675714 CCAGCAGAGCGTTGACCAATA 60.676 52.381 0.00 0.00 0.00 1.90
188 189 0.957395 CCAGCAGAGCGTTGACCAAT 60.957 55.000 0.00 0.00 0.00 3.16
189 190 1.597854 CCAGCAGAGCGTTGACCAA 60.598 57.895 0.00 0.00 0.00 3.67
190 191 2.031012 CCAGCAGAGCGTTGACCA 59.969 61.111 0.00 0.00 0.00 4.02
191 192 1.739562 CTCCAGCAGAGCGTTGACC 60.740 63.158 0.00 0.00 35.31 4.02
192 193 3.867771 CTCCAGCAGAGCGTTGAC 58.132 61.111 0.00 0.00 35.31 3.18
200 201 1.479709 GCCTAAGAGACTCCAGCAGA 58.520 55.000 0.00 0.00 0.00 4.26
201 202 0.463620 GGCCTAAGAGACTCCAGCAG 59.536 60.000 0.00 0.00 0.00 4.24
202 203 0.041833 AGGCCTAAGAGACTCCAGCA 59.958 55.000 1.29 0.00 0.00 4.41
203 204 2.074729 TAGGCCTAAGAGACTCCAGC 57.925 55.000 10.98 0.00 0.00 4.85
204 205 3.964031 ACAATAGGCCTAAGAGACTCCAG 59.036 47.826 18.42 0.00 0.00 3.86
205 206 3.995636 ACAATAGGCCTAAGAGACTCCA 58.004 45.455 18.42 0.00 0.00 3.86
206 207 7.964666 ATATACAATAGGCCTAAGAGACTCC 57.035 40.000 18.42 0.00 0.00 3.85
207 208 8.808092 ACAATATACAATAGGCCTAAGAGACTC 58.192 37.037 18.42 0.00 0.00 3.36
208 209 8.728596 ACAATATACAATAGGCCTAAGAGACT 57.271 34.615 18.42 0.00 0.00 3.24
216 217 8.880244 TCAAGTGATACAATATACAATAGGCCT 58.120 33.333 11.78 11.78 0.00 5.19
217 218 9.155975 CTCAAGTGATACAATATACAATAGGCC 57.844 37.037 0.00 0.00 0.00 5.19
218 219 9.929180 TCTCAAGTGATACAATATACAATAGGC 57.071 33.333 0.00 0.00 0.00 3.93
222 223 9.817809 ACGTTCTCAAGTGATACAATATACAAT 57.182 29.630 0.00 0.00 0.00 2.71
223 224 9.297586 GACGTTCTCAAGTGATACAATATACAA 57.702 33.333 0.00 0.00 0.00 2.41
224 225 8.683615 AGACGTTCTCAAGTGATACAATATACA 58.316 33.333 0.00 0.00 0.00 2.29
225 226 9.171701 GAGACGTTCTCAAGTGATACAATATAC 57.828 37.037 9.30 0.00 42.90 1.47
226 227 9.121658 AGAGACGTTCTCAAGTGATACAATATA 57.878 33.333 14.62 0.00 45.73 0.86
227 228 8.001881 AGAGACGTTCTCAAGTGATACAATAT 57.998 34.615 14.62 0.00 45.73 1.28
228 229 7.392494 AGAGACGTTCTCAAGTGATACAATA 57.608 36.000 14.62 0.00 45.73 1.90
229 230 6.274157 AGAGACGTTCTCAAGTGATACAAT 57.726 37.500 14.62 0.00 45.73 2.71
230 231 5.707242 AGAGACGTTCTCAAGTGATACAA 57.293 39.130 14.62 0.00 45.73 2.41
242 243 2.317040 TGGTCTTTGGAGAGACGTTCT 58.683 47.619 0.00 0.00 45.53 3.01
243 244 2.814280 TGGTCTTTGGAGAGACGTTC 57.186 50.000 0.00 0.00 45.53 3.95
244 245 3.467803 CTTTGGTCTTTGGAGAGACGTT 58.532 45.455 0.00 0.00 45.53 3.99
245 246 2.224305 CCTTTGGTCTTTGGAGAGACGT 60.224 50.000 0.00 0.00 45.53 4.34
246 247 2.417719 CCTTTGGTCTTTGGAGAGACG 58.582 52.381 0.00 0.00 45.53 4.18
247 248 2.155279 GCCTTTGGTCTTTGGAGAGAC 58.845 52.381 0.00 0.00 44.20 3.36
248 249 1.073923 GGCCTTTGGTCTTTGGAGAGA 59.926 52.381 0.00 0.00 31.07 3.10
249 250 1.074566 AGGCCTTTGGTCTTTGGAGAG 59.925 52.381 0.00 0.00 31.15 3.20
250 251 1.073923 GAGGCCTTTGGTCTTTGGAGA 59.926 52.381 6.77 0.00 38.01 3.71
251 252 1.539157 GAGGCCTTTGGTCTTTGGAG 58.461 55.000 6.77 0.00 38.01 3.86
252 253 0.250727 CGAGGCCTTTGGTCTTTGGA 60.251 55.000 6.77 0.00 38.01 3.53
253 254 0.537371 ACGAGGCCTTTGGTCTTTGG 60.537 55.000 6.77 0.00 38.01 3.28
254 255 1.318576 AACGAGGCCTTTGGTCTTTG 58.681 50.000 6.77 0.00 38.01 2.77
255 256 1.681264 CAAACGAGGCCTTTGGTCTTT 59.319 47.619 6.77 0.00 38.01 2.52
256 257 1.133915 TCAAACGAGGCCTTTGGTCTT 60.134 47.619 6.77 1.05 38.01 3.01
257 258 0.472471 TCAAACGAGGCCTTTGGTCT 59.528 50.000 6.77 0.00 42.15 3.85
258 259 1.314730 TTCAAACGAGGCCTTTGGTC 58.685 50.000 6.77 0.00 30.78 4.02
259 260 1.770294 TTTCAAACGAGGCCTTTGGT 58.230 45.000 6.77 2.40 30.78 3.67
260 261 2.100749 ACTTTTCAAACGAGGCCTTTGG 59.899 45.455 6.77 1.63 30.78 3.28
261 262 3.066760 AGACTTTTCAAACGAGGCCTTTG 59.933 43.478 6.77 8.21 0.00 2.77
262 263 3.066760 CAGACTTTTCAAACGAGGCCTTT 59.933 43.478 6.77 0.00 0.00 3.11
263 264 2.618709 CAGACTTTTCAAACGAGGCCTT 59.381 45.455 6.77 0.00 0.00 4.35
264 265 2.158813 TCAGACTTTTCAAACGAGGCCT 60.159 45.455 3.86 3.86 0.00 5.19
265 266 2.218603 TCAGACTTTTCAAACGAGGCC 58.781 47.619 0.00 0.00 0.00 5.19
266 267 3.498397 TCATCAGACTTTTCAAACGAGGC 59.502 43.478 0.00 0.00 0.00 4.70
267 268 4.511454 TGTCATCAGACTTTTCAAACGAGG 59.489 41.667 0.00 0.00 45.20 4.63
268 269 5.657470 TGTCATCAGACTTTTCAAACGAG 57.343 39.130 0.00 0.00 45.20 4.18
269 270 7.905604 ATATGTCATCAGACTTTTCAAACGA 57.094 32.000 0.00 0.00 45.20 3.85
270 271 8.955061 AAATATGTCATCAGACTTTTCAAACG 57.045 30.769 0.00 0.00 45.20 3.60
278 279 9.607333 TCCCTATAGAAATATGTCATCAGACTT 57.393 33.333 0.00 0.00 45.20 3.01
279 280 9.030452 GTCCCTATAGAAATATGTCATCAGACT 57.970 37.037 0.00 0.00 45.20 3.24
280 281 7.971168 CGTCCCTATAGAAATATGTCATCAGAC 59.029 40.741 0.00 0.00 45.19 3.51
281 282 7.122799 CCGTCCCTATAGAAATATGTCATCAGA 59.877 40.741 0.00 0.00 0.00 3.27
282 283 7.093727 ACCGTCCCTATAGAAATATGTCATCAG 60.094 40.741 0.00 0.00 0.00 2.90
283 284 6.724441 ACCGTCCCTATAGAAATATGTCATCA 59.276 38.462 0.00 0.00 0.00 3.07
284 285 7.171630 ACCGTCCCTATAGAAATATGTCATC 57.828 40.000 0.00 0.00 0.00 2.92
285 286 8.696374 CATACCGTCCCTATAGAAATATGTCAT 58.304 37.037 0.00 0.00 0.00 3.06
286 287 7.363530 GCATACCGTCCCTATAGAAATATGTCA 60.364 40.741 0.00 0.00 0.00 3.58
287 288 6.979238 GCATACCGTCCCTATAGAAATATGTC 59.021 42.308 0.00 0.00 0.00 3.06
288 289 6.439375 TGCATACCGTCCCTATAGAAATATGT 59.561 38.462 0.00 0.00 0.00 2.29
289 290 6.873997 TGCATACCGTCCCTATAGAAATATG 58.126 40.000 0.00 2.51 0.00 1.78
290 291 7.676683 ATGCATACCGTCCCTATAGAAATAT 57.323 36.000 0.00 0.00 0.00 1.28
291 292 8.057011 TCTATGCATACCGTCCCTATAGAAATA 58.943 37.037 1.16 0.00 0.00 1.40
292 293 6.895756 TCTATGCATACCGTCCCTATAGAAAT 59.104 38.462 1.16 0.00 0.00 2.17
293 294 6.152323 GTCTATGCATACCGTCCCTATAGAAA 59.848 42.308 1.16 0.00 30.25 2.52
294 295 5.651139 GTCTATGCATACCGTCCCTATAGAA 59.349 44.000 1.16 0.00 30.25 2.10
295 296 5.191426 GTCTATGCATACCGTCCCTATAGA 58.809 45.833 1.16 0.00 0.00 1.98
296 297 4.035324 CGTCTATGCATACCGTCCCTATAG 59.965 50.000 1.16 0.00 0.00 1.31
297 298 3.943381 CGTCTATGCATACCGTCCCTATA 59.057 47.826 1.16 0.00 0.00 1.31
298 299 2.753452 CGTCTATGCATACCGTCCCTAT 59.247 50.000 1.16 0.00 0.00 2.57
299 300 2.156917 CGTCTATGCATACCGTCCCTA 58.843 52.381 1.16 0.00 0.00 3.53
300 301 0.959553 CGTCTATGCATACCGTCCCT 59.040 55.000 1.16 0.00 0.00 4.20
301 302 0.956633 TCGTCTATGCATACCGTCCC 59.043 55.000 16.44 0.00 0.00 4.46
302 303 2.787601 TTCGTCTATGCATACCGTCC 57.212 50.000 16.44 0.00 0.00 4.79
303 304 5.652744 AATTTTCGTCTATGCATACCGTC 57.347 39.130 16.44 1.90 0.00 4.79
304 305 6.315393 AGAAAATTTTCGTCTATGCATACCGT 59.685 34.615 21.98 0.00 41.92 4.83
305 306 6.715464 AGAAAATTTTCGTCTATGCATACCG 58.285 36.000 21.98 8.39 41.92 4.02
306 307 9.813080 GATAGAAAATTTTCGTCTATGCATACC 57.187 33.333 21.98 0.00 41.92 2.73
307 308 9.517361 CGATAGAAAATTTTCGTCTATGCATAC 57.483 33.333 21.98 0.00 41.92 2.39
308 309 9.471084 TCGATAGAAAATTTTCGTCTATGCATA 57.529 29.630 21.98 6.20 46.15 3.14
309 310 8.365399 TCGATAGAAAATTTTCGTCTATGCAT 57.635 30.769 21.98 3.79 46.15 3.96
310 311 7.764695 TCGATAGAAAATTTTCGTCTATGCA 57.235 32.000 21.98 0.00 46.15 3.96
328 329 4.592485 AATGTTAGCCCAGACTCGATAG 57.408 45.455 0.00 0.00 0.00 2.08
329 330 5.353394 AAAATGTTAGCCCAGACTCGATA 57.647 39.130 0.00 0.00 0.00 2.92
330 331 3.914426 AAATGTTAGCCCAGACTCGAT 57.086 42.857 0.00 0.00 0.00 3.59
331 332 3.695830 AAAATGTTAGCCCAGACTCGA 57.304 42.857 0.00 0.00 0.00 4.04
396 397 9.933723 CCTTTGATTTGTAGGAAATTGATTTCT 57.066 29.630 14.20 5.47 44.21 2.52
397 398 9.154847 CCCTTTGATTTGTAGGAAATTGATTTC 57.845 33.333 7.73 7.73 44.08 2.17
398 399 7.607607 GCCCTTTGATTTGTAGGAAATTGATTT 59.392 33.333 0.00 0.00 0.00 2.17
399 400 7.038088 AGCCCTTTGATTTGTAGGAAATTGATT 60.038 33.333 0.00 0.00 0.00 2.57
400 401 6.441604 AGCCCTTTGATTTGTAGGAAATTGAT 59.558 34.615 0.00 0.00 0.00 2.57
401 402 5.779771 AGCCCTTTGATTTGTAGGAAATTGA 59.220 36.000 0.00 0.00 0.00 2.57
402 403 6.041423 AGCCCTTTGATTTGTAGGAAATTG 57.959 37.500 0.00 0.00 0.00 2.32
403 404 6.019108 AGAGCCCTTTGATTTGTAGGAAATT 58.981 36.000 0.00 0.00 0.00 1.82
404 405 5.583932 AGAGCCCTTTGATTTGTAGGAAAT 58.416 37.500 0.00 0.00 0.00 2.17
405 406 4.998051 AGAGCCCTTTGATTTGTAGGAAA 58.002 39.130 0.00 0.00 0.00 3.13
406 407 4.657814 AGAGCCCTTTGATTTGTAGGAA 57.342 40.909 0.00 0.00 0.00 3.36
407 408 5.030147 TCTAGAGCCCTTTGATTTGTAGGA 58.970 41.667 0.00 0.00 0.00 2.94
408 409 5.359194 TCTAGAGCCCTTTGATTTGTAGG 57.641 43.478 0.00 0.00 0.00 3.18
409 410 7.687941 TTTTCTAGAGCCCTTTGATTTGTAG 57.312 36.000 0.00 0.00 0.00 2.74
411 412 6.976934 TTTTTCTAGAGCCCTTTGATTTGT 57.023 33.333 0.00 0.00 0.00 2.83
454 455 9.362151 TGTTTTGGCCTATAGGAATTTTATAGG 57.638 33.333 23.61 21.51 46.87 2.57
457 458 8.870116 GGATGTTTTGGCCTATAGGAATTTTAT 58.130 33.333 23.61 7.59 37.39 1.40
458 459 7.013846 CGGATGTTTTGGCCTATAGGAATTTTA 59.986 37.037 23.61 2.91 37.39 1.52
459 460 6.183360 CGGATGTTTTGGCCTATAGGAATTTT 60.183 38.462 23.61 0.00 37.39 1.82
460 461 5.301805 CGGATGTTTTGGCCTATAGGAATTT 59.698 40.000 23.61 0.00 37.39 1.82
461 462 4.827284 CGGATGTTTTGGCCTATAGGAATT 59.173 41.667 23.61 0.13 37.39 2.17
462 463 4.398319 CGGATGTTTTGGCCTATAGGAAT 58.602 43.478 23.61 3.55 37.39 3.01
463 464 3.434453 CCGGATGTTTTGGCCTATAGGAA 60.434 47.826 23.61 5.87 37.39 3.36
464 465 2.105821 CCGGATGTTTTGGCCTATAGGA 59.894 50.000 23.61 0.00 37.39 2.94
465 466 2.105821 TCCGGATGTTTTGGCCTATAGG 59.894 50.000 15.01 15.01 38.53 2.57
466 467 3.485463 TCCGGATGTTTTGGCCTATAG 57.515 47.619 0.00 0.00 0.00 1.31
467 468 3.935818 TTCCGGATGTTTTGGCCTATA 57.064 42.857 4.15 0.00 0.00 1.31
468 469 2.818751 TTCCGGATGTTTTGGCCTAT 57.181 45.000 4.15 0.00 0.00 2.57
469 470 2.588464 TTTCCGGATGTTTTGGCCTA 57.412 45.000 4.15 0.00 0.00 3.93
470 471 1.824852 GATTTCCGGATGTTTTGGCCT 59.175 47.619 4.15 0.00 0.00 5.19
471 472 1.548269 TGATTTCCGGATGTTTTGGCC 59.452 47.619 4.15 0.00 0.00 5.36
472 473 3.189285 CATGATTTCCGGATGTTTTGGC 58.811 45.455 4.15 0.00 0.00 4.52
473 474 3.784338 CCATGATTTCCGGATGTTTTGG 58.216 45.455 4.15 6.93 0.00 3.28
474 475 3.119029 AGCCATGATTTCCGGATGTTTTG 60.119 43.478 4.15 0.75 0.00 2.44
475 476 3.099141 AGCCATGATTTCCGGATGTTTT 58.901 40.909 4.15 0.00 0.00 2.43
476 477 2.738743 AGCCATGATTTCCGGATGTTT 58.261 42.857 4.15 0.00 0.00 2.83
477 478 2.442236 AGCCATGATTTCCGGATGTT 57.558 45.000 4.15 0.00 0.00 2.71
478 479 2.172505 TGTAGCCATGATTTCCGGATGT 59.827 45.455 4.15 0.00 0.00 3.06
479 480 2.810274 CTGTAGCCATGATTTCCGGATG 59.190 50.000 4.15 0.00 0.00 3.51
480 481 2.811873 GCTGTAGCCATGATTTCCGGAT 60.812 50.000 4.15 0.00 34.31 4.18
481 482 1.475034 GCTGTAGCCATGATTTCCGGA 60.475 52.381 0.00 0.00 34.31 5.14
482 483 0.947244 GCTGTAGCCATGATTTCCGG 59.053 55.000 0.00 0.00 34.31 5.14
494 495 8.893727 CCATTATTACTATTTATGGGCTGTAGC 58.106 37.037 0.00 0.00 41.14 3.58
495 496 9.959721 ACCATTATTACTATTTATGGGCTGTAG 57.040 33.333 0.00 0.00 40.01 2.74
497 498 9.654919 AAACCATTATTACTATTTATGGGCTGT 57.345 29.630 0.00 0.00 40.01 4.40
499 500 9.309224 GGAAACCATTATTACTATTTATGGGCT 57.691 33.333 0.00 0.00 40.01 5.19
500 501 9.084533 TGGAAACCATTATTACTATTTATGGGC 57.915 33.333 0.00 0.00 40.01 5.36
504 505 9.875708 TGGCTGGAAACCATTATTACTATTTAT 57.124 29.630 0.00 0.00 30.82 1.40
505 506 9.702253 TTGGCTGGAAACCATTATTACTATTTA 57.298 29.630 0.00 0.00 36.96 1.40
506 507 8.602472 TTGGCTGGAAACCATTATTACTATTT 57.398 30.769 0.00 0.00 36.96 1.40
507 508 8.602472 TTTGGCTGGAAACCATTATTACTATT 57.398 30.769 0.00 0.00 36.96 1.73
508 509 8.602472 TTTTGGCTGGAAACCATTATTACTAT 57.398 30.769 0.00 0.00 36.96 2.12
509 510 8.423906 TTTTTGGCTGGAAACCATTATTACTA 57.576 30.769 0.00 0.00 36.96 1.82
510 511 6.926630 TTTTGGCTGGAAACCATTATTACT 57.073 33.333 0.00 0.00 36.96 2.24
531 532 2.752903 CCTAAGCACGCCCTACATTTTT 59.247 45.455 0.00 0.00 0.00 1.94
532 533 2.026636 TCCTAAGCACGCCCTACATTTT 60.027 45.455 0.00 0.00 0.00 1.82
533 534 1.557832 TCCTAAGCACGCCCTACATTT 59.442 47.619 0.00 0.00 0.00 2.32
534 535 1.134491 GTCCTAAGCACGCCCTACATT 60.134 52.381 0.00 0.00 0.00 2.71
535 536 0.464452 GTCCTAAGCACGCCCTACAT 59.536 55.000 0.00 0.00 0.00 2.29
536 537 0.613853 AGTCCTAAGCACGCCCTACA 60.614 55.000 0.00 0.00 0.00 2.74
537 538 0.102663 GAGTCCTAAGCACGCCCTAC 59.897 60.000 0.00 0.00 0.00 3.18
538 539 0.323999 TGAGTCCTAAGCACGCCCTA 60.324 55.000 0.00 0.00 0.00 3.53
539 540 0.978146 ATGAGTCCTAAGCACGCCCT 60.978 55.000 0.00 0.00 0.00 5.19
540 541 0.107654 AATGAGTCCTAAGCACGCCC 60.108 55.000 0.00 0.00 0.00 6.13
541 542 1.398390 CAAATGAGTCCTAAGCACGCC 59.602 52.381 0.00 0.00 0.00 5.68
542 543 2.094417 GTCAAATGAGTCCTAAGCACGC 59.906 50.000 0.00 0.00 0.00 5.34
543 544 2.673368 GGTCAAATGAGTCCTAAGCACG 59.327 50.000 0.00 0.00 0.00 5.34
544 545 3.674997 TGGTCAAATGAGTCCTAAGCAC 58.325 45.455 0.00 0.00 0.00 4.40
545 546 4.041567 TCTTGGTCAAATGAGTCCTAAGCA 59.958 41.667 0.00 0.00 0.00 3.91
546 547 4.579869 TCTTGGTCAAATGAGTCCTAAGC 58.420 43.478 0.00 0.00 0.00 3.09
547 548 7.693969 AAATCTTGGTCAAATGAGTCCTAAG 57.306 36.000 0.00 0.00 0.00 2.18
548 549 9.010029 GTTAAATCTTGGTCAAATGAGTCCTAA 57.990 33.333 0.00 0.00 0.00 2.69
549 550 7.610305 GGTTAAATCTTGGTCAAATGAGTCCTA 59.390 37.037 0.00 0.00 0.00 2.94
550 551 6.434340 GGTTAAATCTTGGTCAAATGAGTCCT 59.566 38.462 0.00 0.00 0.00 3.85
551 552 6.208599 TGGTTAAATCTTGGTCAAATGAGTCC 59.791 38.462 0.00 0.00 0.00 3.85
552 553 7.214467 TGGTTAAATCTTGGTCAAATGAGTC 57.786 36.000 0.00 0.00 0.00 3.36
553 554 7.287696 ACTTGGTTAAATCTTGGTCAAATGAGT 59.712 33.333 0.00 0.00 0.00 3.41
554 555 7.661040 ACTTGGTTAAATCTTGGTCAAATGAG 58.339 34.615 0.00 0.00 0.00 2.90
555 556 7.505585 AGACTTGGTTAAATCTTGGTCAAATGA 59.494 33.333 0.00 0.00 0.00 2.57
556 557 7.661040 AGACTTGGTTAAATCTTGGTCAAATG 58.339 34.615 0.00 0.00 0.00 2.32
557 558 7.308589 CGAGACTTGGTTAAATCTTGGTCAAAT 60.309 37.037 0.00 0.00 0.00 2.32
558 559 6.017440 CGAGACTTGGTTAAATCTTGGTCAAA 60.017 38.462 0.00 0.00 0.00 2.69
559 560 5.468746 CGAGACTTGGTTAAATCTTGGTCAA 59.531 40.000 0.00 0.00 0.00 3.18
560 561 4.994852 CGAGACTTGGTTAAATCTTGGTCA 59.005 41.667 0.00 0.00 0.00 4.02
561 562 5.235516 TCGAGACTTGGTTAAATCTTGGTC 58.764 41.667 0.00 0.00 0.00 4.02
562 563 5.223449 TCGAGACTTGGTTAAATCTTGGT 57.777 39.130 0.00 0.00 0.00 3.67
563 564 5.005779 CGATCGAGACTTGGTTAAATCTTGG 59.994 44.000 10.26 0.00 0.00 3.61
564 565 5.805486 TCGATCGAGACTTGGTTAAATCTTG 59.195 40.000 15.15 0.00 0.00 3.02
565 566 5.962433 TCGATCGAGACTTGGTTAAATCTT 58.038 37.500 15.15 0.00 0.00 2.40
566 567 5.125739 ACTCGATCGAGACTTGGTTAAATCT 59.874 40.000 42.97 18.66 44.53 2.40
567 568 5.230306 CACTCGATCGAGACTTGGTTAAATC 59.770 44.000 42.97 0.00 44.53 2.17
568 569 5.103000 CACTCGATCGAGACTTGGTTAAAT 58.897 41.667 42.97 19.26 44.53 1.40
569 570 4.216902 TCACTCGATCGAGACTTGGTTAAA 59.783 41.667 42.97 17.41 44.53 1.52
570 571 3.754850 TCACTCGATCGAGACTTGGTTAA 59.245 43.478 42.97 17.73 44.53 2.01
571 572 3.126514 GTCACTCGATCGAGACTTGGTTA 59.873 47.826 42.97 18.04 44.53 2.85
572 573 2.095161 GTCACTCGATCGAGACTTGGTT 60.095 50.000 42.97 21.83 44.53 3.67
573 574 1.469308 GTCACTCGATCGAGACTTGGT 59.531 52.381 42.97 23.20 44.53 3.67
574 575 1.468914 TGTCACTCGATCGAGACTTGG 59.531 52.381 42.97 27.00 44.53 3.61
575 576 2.902065 TGTCACTCGATCGAGACTTG 57.098 50.000 42.97 31.84 44.53 3.16
576 577 3.010420 TCATGTCACTCGATCGAGACTT 58.990 45.455 42.97 28.22 44.53 3.01
577 578 2.353269 GTCATGTCACTCGATCGAGACT 59.647 50.000 42.97 24.63 44.53 3.24
578 579 2.096013 TGTCATGTCACTCGATCGAGAC 59.904 50.000 42.97 32.58 44.53 3.36
579 580 2.356135 TGTCATGTCACTCGATCGAGA 58.644 47.619 42.97 25.89 44.53 4.04
580 581 2.832672 TGTCATGTCACTCGATCGAG 57.167 50.000 36.95 36.95 46.91 4.04
581 582 2.796032 GCATGTCATGTCACTCGATCGA 60.796 50.000 18.32 18.32 0.00 3.59
582 583 1.520174 GCATGTCATGTCACTCGATCG 59.480 52.381 9.36 9.36 0.00 3.69
583 584 2.543641 TGCATGTCATGTCACTCGATC 58.456 47.619 14.26 0.00 0.00 3.69
584 585 2.678471 TGCATGTCATGTCACTCGAT 57.322 45.000 14.26 0.00 0.00 3.59
585 586 2.453983 TTGCATGTCATGTCACTCGA 57.546 45.000 14.26 0.00 0.00 4.04
586 587 3.541071 TTTTGCATGTCATGTCACTCG 57.459 42.857 14.26 0.00 0.00 4.18
637 638 8.217131 TGTGAGATCTTACATGAAAATCCATG 57.783 34.615 15.83 0.00 46.90 3.66
638 639 8.270030 TCTGTGAGATCTTACATGAAAATCCAT 58.730 33.333 19.53 0.00 0.00 3.41
639 640 7.623630 TCTGTGAGATCTTACATGAAAATCCA 58.376 34.615 19.53 0.00 0.00 3.41
640 641 8.674263 ATCTGTGAGATCTTACATGAAAATCC 57.326 34.615 19.53 0.00 25.75 3.01
644 645 8.140628 GCTCTATCTGTGAGATCTTACATGAAA 58.859 37.037 19.53 7.50 36.20 2.69
645 646 7.521261 CGCTCTATCTGTGAGATCTTACATGAA 60.521 40.741 19.53 9.70 36.20 2.57
646 647 6.072783 CGCTCTATCTGTGAGATCTTACATGA 60.073 42.308 19.53 17.69 36.20 3.07
647 648 6.072783 TCGCTCTATCTGTGAGATCTTACATG 60.073 42.308 19.53 13.70 36.20 3.21
648 649 6.000840 TCGCTCTATCTGTGAGATCTTACAT 58.999 40.000 19.53 9.48 36.20 2.29
649 650 5.368989 TCGCTCTATCTGTGAGATCTTACA 58.631 41.667 18.35 18.35 36.20 2.41
650 651 5.468746 ACTCGCTCTATCTGTGAGATCTTAC 59.531 44.000 10.60 10.60 42.68 2.34
651 652 5.616270 ACTCGCTCTATCTGTGAGATCTTA 58.384 41.667 10.66 0.00 42.68 2.10
652 653 4.460263 ACTCGCTCTATCTGTGAGATCTT 58.540 43.478 10.66 0.00 42.68 2.40
653 654 4.065088 GACTCGCTCTATCTGTGAGATCT 58.935 47.826 10.66 0.00 42.68 2.75
654 655 3.120683 CGACTCGCTCTATCTGTGAGATC 60.121 52.174 10.66 0.00 42.68 2.75
655 656 2.805671 CGACTCGCTCTATCTGTGAGAT 59.194 50.000 10.66 0.00 42.68 2.75
656 657 2.159085 TCGACTCGCTCTATCTGTGAGA 60.159 50.000 10.66 0.00 42.68 3.27
657 658 2.033236 GTCGACTCGCTCTATCTGTGAG 60.033 54.545 8.70 0.00 44.76 3.51
658 659 1.934525 GTCGACTCGCTCTATCTGTGA 59.065 52.381 8.70 0.00 0.00 3.58
659 660 1.937223 AGTCGACTCGCTCTATCTGTG 59.063 52.381 13.58 0.00 0.00 3.66
660 661 1.937223 CAGTCGACTCGCTCTATCTGT 59.063 52.381 16.96 0.00 0.00 3.41
661 662 2.205911 TCAGTCGACTCGCTCTATCTG 58.794 52.381 16.96 1.05 0.00 2.90
662 663 2.101750 TCTCAGTCGACTCGCTCTATCT 59.898 50.000 16.96 0.00 0.00 1.98
663 664 2.220133 GTCTCAGTCGACTCGCTCTATC 59.780 54.545 16.96 0.00 0.00 2.08
664 665 2.159014 AGTCTCAGTCGACTCGCTCTAT 60.159 50.000 16.96 0.00 40.04 1.98
665 666 1.205179 AGTCTCAGTCGACTCGCTCTA 59.795 52.381 16.96 0.00 40.04 2.43
666 667 0.036765 AGTCTCAGTCGACTCGCTCT 60.037 55.000 16.96 9.37 40.04 4.09
667 668 0.800012 AAGTCTCAGTCGACTCGCTC 59.200 55.000 16.96 7.14 43.14 5.03
668 669 2.096220 TAAGTCTCAGTCGACTCGCT 57.904 50.000 16.96 8.40 43.14 4.93
669 670 2.507866 GTTAAGTCTCAGTCGACTCGC 58.492 52.381 16.96 6.11 43.14 5.03
670 671 2.411069 TCGTTAAGTCTCAGTCGACTCG 59.589 50.000 16.96 12.90 43.14 4.18
671 672 3.679025 TCTCGTTAAGTCTCAGTCGACTC 59.321 47.826 16.96 4.27 43.14 3.36
672 673 3.432933 GTCTCGTTAAGTCTCAGTCGACT 59.567 47.826 13.58 13.58 45.73 4.18
673 674 3.186001 TGTCTCGTTAAGTCTCAGTCGAC 59.814 47.826 7.70 7.70 0.00 4.20
674 675 3.396560 TGTCTCGTTAAGTCTCAGTCGA 58.603 45.455 0.00 0.00 0.00 4.20
675 676 3.432592 TCTGTCTCGTTAAGTCTCAGTCG 59.567 47.826 0.00 0.00 0.00 4.18
676 677 5.359716 TTCTGTCTCGTTAAGTCTCAGTC 57.640 43.478 0.00 0.00 0.00 3.51
677 678 5.769484 TTTCTGTCTCGTTAAGTCTCAGT 57.231 39.130 0.00 0.00 0.00 3.41
701 702 9.076596 GCGCAAATCATTTACTTCTCTTTATTT 57.923 29.630 0.30 0.00 0.00 1.40
702 703 8.462016 AGCGCAAATCATTTACTTCTCTTTATT 58.538 29.630 11.47 0.00 0.00 1.40
703 704 7.989826 AGCGCAAATCATTTACTTCTCTTTAT 58.010 30.769 11.47 0.00 0.00 1.40
704 705 7.377766 AGCGCAAATCATTTACTTCTCTTTA 57.622 32.000 11.47 0.00 0.00 1.85
705 706 6.259550 AGCGCAAATCATTTACTTCTCTTT 57.740 33.333 11.47 0.00 0.00 2.52
706 707 5.886960 AGCGCAAATCATTTACTTCTCTT 57.113 34.783 11.47 0.00 0.00 2.85
707 708 5.634896 CAAGCGCAAATCATTTACTTCTCT 58.365 37.500 11.47 0.00 0.00 3.10
708 709 4.263911 GCAAGCGCAAATCATTTACTTCTC 59.736 41.667 11.47 0.00 38.36 2.87
709 710 4.168760 GCAAGCGCAAATCATTTACTTCT 58.831 39.130 11.47 0.00 38.36 2.85
710 711 3.304293 GGCAAGCGCAAATCATTTACTTC 59.696 43.478 11.47 0.00 41.24 3.01
711 712 3.253230 GGCAAGCGCAAATCATTTACTT 58.747 40.909 11.47 0.00 41.24 2.24
712 713 2.230992 TGGCAAGCGCAAATCATTTACT 59.769 40.909 11.47 0.00 41.24 2.24
713 714 2.345341 GTGGCAAGCGCAAATCATTTAC 59.655 45.455 11.47 0.00 41.24 2.01
714 715 2.605030 GTGGCAAGCGCAAATCATTTA 58.395 42.857 11.47 0.00 41.24 1.40
715 716 1.431496 GTGGCAAGCGCAAATCATTT 58.569 45.000 11.47 0.00 41.24 2.32
716 717 0.390209 GGTGGCAAGCGCAAATCATT 60.390 50.000 11.47 0.00 41.24 2.57
717 718 1.216178 GGTGGCAAGCGCAAATCAT 59.784 52.632 11.47 0.00 41.24 2.45
718 719 1.462731 AAGGTGGCAAGCGCAAATCA 61.463 50.000 11.47 0.00 41.24 2.57
719 720 0.319813 AAAGGTGGCAAGCGCAAATC 60.320 50.000 11.47 0.00 41.24 2.17
720 721 0.319813 GAAAGGTGGCAAGCGCAAAT 60.320 50.000 11.47 0.00 41.24 2.32
752 753 0.031994 ATGTTGGCAAAGTGGAACGC 59.968 50.000 0.00 0.00 45.86 4.84
753 754 1.769733 CATGTTGGCAAAGTGGAACG 58.230 50.000 0.00 0.00 45.86 3.95
757 758 0.320073 CCTGCATGTTGGCAAAGTGG 60.320 55.000 0.00 0.00 44.40 4.00
765 1163 2.256158 CACGCACCTGCATGTTGG 59.744 61.111 0.00 0.00 42.21 3.77
781 1179 2.616842 GCTAAATTAAAGGCCTAGCGCA 59.383 45.455 5.16 0.00 40.31 6.09
782 1180 2.879026 AGCTAAATTAAAGGCCTAGCGC 59.121 45.455 5.16 0.00 39.93 5.92
794 1192 7.363880 CCAGTCTCTAGTGTGGAAGCTAAATTA 60.364 40.741 0.00 0.00 31.04 1.40
812 1210 2.681778 CGGGGCAGTCCAGTCTCT 60.682 66.667 0.00 0.00 37.22 3.10
829 1227 1.117142 TATATATAGGCGGCCGGGGC 61.117 60.000 29.38 12.22 41.06 5.80
830 1228 0.677842 GTATATATAGGCGGCCGGGG 59.322 60.000 29.38 0.00 0.00 5.73
870 1268 4.900684 AGAAGAAGGGTTTTGTAGCTCTC 58.099 43.478 0.00 0.00 0.00 3.20
887 1288 2.992124 TGTTTGTGTCGGGAAGAAGA 57.008 45.000 0.00 0.00 0.00 2.87
906 1309 3.112263 TGGGTTAGCTGGCTAGTTGTAT 58.888 45.455 0.00 0.00 0.00 2.29
911 1314 0.905357 CACTGGGTTAGCTGGCTAGT 59.095 55.000 0.00 0.00 0.00 2.57
917 1320 0.613260 TAGGTGCACTGGGTTAGCTG 59.387 55.000 17.98 0.00 0.00 4.24
948 1351 4.278513 TCCCGGGCAACAAGTGGG 62.279 66.667 18.49 0.00 41.43 4.61
952 1355 0.745845 CTGATCTCCCGGGCAACAAG 60.746 60.000 18.49 7.89 39.74 3.16
955 1358 2.514824 GCTGATCTCCCGGGCAAC 60.515 66.667 18.49 7.75 0.00 4.17
956 1359 2.541547 CTTGCTGATCTCCCGGGCAA 62.542 60.000 18.49 13.77 39.99 4.52
957 1360 3.008517 TTGCTGATCTCCCGGGCA 61.009 61.111 18.49 7.04 0.00 5.36
958 1361 2.203126 CTTGCTGATCTCCCGGGC 60.203 66.667 18.49 1.20 0.00 6.13
959 1362 0.830648 TAACTTGCTGATCTCCCGGG 59.169 55.000 16.85 16.85 0.00 5.73
960 1363 2.691409 TTAACTTGCTGATCTCCCGG 57.309 50.000 0.00 0.00 0.00 5.73
961 1364 4.034510 GTGAATTAACTTGCTGATCTCCCG 59.965 45.833 0.00 0.00 0.00 5.14
962 1365 5.189180 AGTGAATTAACTTGCTGATCTCCC 58.811 41.667 0.00 0.00 0.00 4.30
963 1366 5.006165 CGAGTGAATTAACTTGCTGATCTCC 59.994 44.000 0.00 0.00 0.00 3.71
964 1367 5.807520 TCGAGTGAATTAACTTGCTGATCTC 59.192 40.000 5.37 0.00 32.39 2.75
965 1368 5.724328 TCGAGTGAATTAACTTGCTGATCT 58.276 37.500 5.37 0.00 32.39 2.75
966 1369 5.807520 TCTCGAGTGAATTAACTTGCTGATC 59.192 40.000 13.13 0.00 32.39 2.92
976 1379 4.870426 GCTGGTTGATCTCGAGTGAATTAA 59.130 41.667 13.13 0.00 0.00 1.40
978 1381 3.265791 GCTGGTTGATCTCGAGTGAATT 58.734 45.455 13.13 0.00 0.00 2.17
980 1383 1.618343 TGCTGGTTGATCTCGAGTGAA 59.382 47.619 13.13 0.90 0.00 3.18
1092 1506 1.063867 ACGTAGTCCAGGAGGTAGCAT 60.064 52.381 0.00 0.00 29.74 3.79
1164 1578 2.125512 GGGTTGCGCTCGATCAGT 60.126 61.111 9.73 0.00 0.00 3.41
1191 1605 1.516603 GAAGCGGTACTCGGACAGC 60.517 63.158 0.00 0.00 40.37 4.40
1218 1632 3.822192 CCGGAGCCGACGATGACA 61.822 66.667 11.05 0.00 42.83 3.58
1428 1842 2.353607 GAGACTATGGACGGCGCG 60.354 66.667 6.90 0.00 0.00 6.86
1440 1854 3.069980 GCGCACGATCCTGGAGACT 62.070 63.158 0.30 0.00 0.00 3.24
1442 1856 3.838271 GGCGCACGATCCTGGAGA 61.838 66.667 10.83 0.00 0.00 3.71
1494 1908 2.443394 GCATCCCATCCCGGACAGA 61.443 63.158 0.73 0.00 36.56 3.41
2187 2610 1.079256 CACCCTGTCCCCTCTCTGA 59.921 63.158 0.00 0.00 0.00 3.27
2188 2611 2.664081 GCACCCTGTCCCCTCTCTG 61.664 68.421 0.00 0.00 0.00 3.35
2370 2793 1.374252 GAACATGACGGTGTCGCCT 60.374 57.895 0.00 0.00 40.63 5.52
2386 2809 2.094182 AGCAGCGAGGAACGAATTAGAA 60.094 45.455 0.00 0.00 45.77 2.10
2388 2811 1.927895 AGCAGCGAGGAACGAATTAG 58.072 50.000 0.00 0.00 45.77 1.73
2395 2818 1.805945 CCGTGTAGCAGCGAGGAAC 60.806 63.158 0.00 0.00 0.00 3.62
2397 2820 4.129737 GCCGTGTAGCAGCGAGGA 62.130 66.667 0.00 0.00 0.00 3.71
2411 2834 2.779951 TTATGATCGATGGCCGGCCG 62.780 60.000 39.00 27.43 39.42 6.13
2412 2835 1.003839 TTATGATCGATGGCCGGCC 60.004 57.895 39.40 39.40 39.14 6.13
2413 2836 1.626654 CGTTATGATCGATGGCCGGC 61.627 60.000 21.18 21.18 39.14 6.13
2414 2837 0.038618 TCGTTATGATCGATGGCCGG 60.039 55.000 0.54 0.00 39.14 6.13
2416 2839 2.724977 TCTCGTTATGATCGATGGCC 57.275 50.000 0.54 0.00 36.73 5.36
2428 2859 1.108776 CACCTTCCCCGATCTCGTTA 58.891 55.000 0.00 0.00 37.74 3.18
2472 2903 7.316544 ACGCTCGAATGGATTTTAATTAACT 57.683 32.000 0.00 0.00 0.00 2.24
2473 2904 7.317269 CGTACGCTCGAATGGATTTTAATTAAC 59.683 37.037 0.52 0.00 0.00 2.01
2477 2908 4.807304 ACGTACGCTCGAATGGATTTTAAT 59.193 37.500 16.72 0.00 34.70 1.40
2485 2916 1.410737 CCACACGTACGCTCGAATGG 61.411 60.000 16.72 10.10 34.94 3.16
2487 2918 1.153901 CCCACACGTACGCTCGAAT 60.154 57.895 16.72 0.00 34.70 3.34
2491 2922 1.226603 CTAGCCCACACGTACGCTC 60.227 63.158 16.72 0.00 32.76 5.03
2497 2928 1.476891 CATACAGTCTAGCCCACACGT 59.523 52.381 0.00 0.00 0.00 4.49
2498 2929 1.749063 TCATACAGTCTAGCCCACACG 59.251 52.381 0.00 0.00 0.00 4.49
2500 2931 7.509318 ACTTAATATCATACAGTCTAGCCCACA 59.491 37.037 0.00 0.00 0.00 4.17
2502 2933 8.492415 AACTTAATATCATACAGTCTAGCCCA 57.508 34.615 0.00 0.00 0.00 5.36
2743 3177 6.312918 ACGACAACAAATGCGTAAAGAGATAT 59.687 34.615 0.00 0.00 39.07 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.