Multiple sequence alignment - TraesCS1B01G052700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G052700 chr1B 100.000 3431 0 0 1 3431 33064679 33068109 0.000000e+00 6336.0
1 TraesCS1B01G052700 chr1B 80.017 1176 211 19 1256 2422 642958140 642956980 0.000000e+00 848.0
2 TraesCS1B01G052700 chr1D 90.748 1859 117 28 895 2726 20569816 20567986 0.000000e+00 2429.0
3 TraesCS1B01G052700 chr1D 90.741 54 4 1 2653 2706 20567660 20567608 1.710000e-08 71.3
4 TraesCS1B01G052700 chr1A 91.598 1702 105 19 964 2653 21985490 21987165 0.000000e+00 2316.0
5 TraesCS1B01G052700 chr1A 90.090 111 10 1 2260 2370 21991890 21991999 3.570000e-30 143.0
6 TraesCS1B01G052700 chr7A 99.219 896 4 2 1 893 499445907 499446802 0.000000e+00 1613.0
7 TraesCS1B01G052700 chr7A 98.778 900 6 4 1 896 575584773 575583875 0.000000e+00 1596.0
8 TraesCS1B01G052700 chr7A 76.471 255 46 14 1178 1425 545935729 545935482 3.590000e-25 126.0
9 TraesCS1B01G052700 chr4B 98.894 904 6 3 1 901 604498879 604499781 0.000000e+00 1611.0
10 TraesCS1B01G052700 chr4B 99.001 901 4 4 1 896 173328385 173329285 0.000000e+00 1609.0
11 TraesCS1B01G052700 chr4A 98.888 899 7 2 1 896 344006803 344007701 0.000000e+00 1602.0
12 TraesCS1B01G052700 chr4A 98.884 896 7 2 1 893 593673283 593672388 0.000000e+00 1596.0
13 TraesCS1B01G052700 chr2A 98.888 899 6 3 1 895 769484014 769484912 0.000000e+00 1602.0
14 TraesCS1B01G052700 chr5B 98.776 899 7 3 1 895 295201075 295200177 0.000000e+00 1596.0
15 TraesCS1B01G052700 chr3A 98.884 896 7 2 1 893 61242517 61241622 0.000000e+00 1596.0
16 TraesCS1B01G052700 chr6A 80.409 1368 227 35 1077 2422 13503712 13505060 0.000000e+00 1003.0
17 TraesCS1B01G052700 chr6A 77.834 1394 243 53 1058 2427 602623474 602624825 0.000000e+00 802.0
18 TraesCS1B01G052700 chr6D 77.994 1386 255 42 1058 2427 455829301 455830652 0.000000e+00 824.0
19 TraesCS1B01G052700 chr6B 77.842 1381 258 41 1058 2423 693062646 693063993 0.000000e+00 811.0
20 TraesCS1B01G052700 chr7D 75.926 270 46 18 1165 1425 451186431 451186690 1.670000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G052700 chr1B 33064679 33068109 3430 False 6336.00 6336 100.0000 1 3431 1 chr1B.!!$F1 3430
1 TraesCS1B01G052700 chr1B 642956980 642958140 1160 True 848.00 848 80.0170 1256 2422 1 chr1B.!!$R1 1166
2 TraesCS1B01G052700 chr1D 20567608 20569816 2208 True 1250.15 2429 90.7445 895 2726 2 chr1D.!!$R1 1831
3 TraesCS1B01G052700 chr1A 21985490 21987165 1675 False 2316.00 2316 91.5980 964 2653 1 chr1A.!!$F1 1689
4 TraesCS1B01G052700 chr7A 499445907 499446802 895 False 1613.00 1613 99.2190 1 893 1 chr7A.!!$F1 892
5 TraesCS1B01G052700 chr7A 575583875 575584773 898 True 1596.00 1596 98.7780 1 896 1 chr7A.!!$R2 895
6 TraesCS1B01G052700 chr4B 604498879 604499781 902 False 1611.00 1611 98.8940 1 901 1 chr4B.!!$F2 900
7 TraesCS1B01G052700 chr4B 173328385 173329285 900 False 1609.00 1609 99.0010 1 896 1 chr4B.!!$F1 895
8 TraesCS1B01G052700 chr4A 344006803 344007701 898 False 1602.00 1602 98.8880 1 896 1 chr4A.!!$F1 895
9 TraesCS1B01G052700 chr4A 593672388 593673283 895 True 1596.00 1596 98.8840 1 893 1 chr4A.!!$R1 892
10 TraesCS1B01G052700 chr2A 769484014 769484912 898 False 1602.00 1602 98.8880 1 895 1 chr2A.!!$F1 894
11 TraesCS1B01G052700 chr5B 295200177 295201075 898 True 1596.00 1596 98.7760 1 895 1 chr5B.!!$R1 894
12 TraesCS1B01G052700 chr3A 61241622 61242517 895 True 1596.00 1596 98.8840 1 893 1 chr3A.!!$R1 892
13 TraesCS1B01G052700 chr6A 13503712 13505060 1348 False 1003.00 1003 80.4090 1077 2422 1 chr6A.!!$F1 1345
14 TraesCS1B01G052700 chr6A 602623474 602624825 1351 False 802.00 802 77.8340 1058 2427 1 chr6A.!!$F2 1369
15 TraesCS1B01G052700 chr6D 455829301 455830652 1351 False 824.00 824 77.9940 1058 2427 1 chr6D.!!$F1 1369
16 TraesCS1B01G052700 chr6B 693062646 693063993 1347 False 811.00 811 77.8420 1058 2423 1 chr6B.!!$F1 1365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1001 1.108776 CACCTTCCCCGATCTCGTTA 58.891 55.0 0.0 0.0 37.74 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2865 2906 0.102663 GTAGGGCGTGCTTAGGACTC 59.897 60.0 1.88 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.982291 TTCTTTAGTAAATGTTAATCGTGCATC 57.018 29.630 0.00 0.00 0.00 3.91
678 683 6.312918 ACGACAACAAATGCGTAAAGAGATAT 59.687 34.615 0.00 0.00 39.07 1.63
919 927 8.492415 AACTTAATATCATACAGTCTAGCCCA 57.508 34.615 0.00 0.00 0.00 5.36
921 929 7.509318 ACTTAATATCATACAGTCTAGCCCACA 59.491 37.037 0.00 0.00 0.00 4.17
923 931 1.749063 TCATACAGTCTAGCCCACACG 59.251 52.381 0.00 0.00 0.00 4.49
924 932 1.476891 CATACAGTCTAGCCCACACGT 59.523 52.381 0.00 0.00 0.00 4.49
930 938 1.226603 CTAGCCCACACGTACGCTC 60.227 63.158 16.72 0.00 32.76 5.03
934 942 1.153901 CCCACACGTACGCTCGAAT 60.154 57.895 16.72 0.00 34.70 3.34
936 944 1.410737 CCACACGTACGCTCGAATGG 61.411 60.000 16.72 10.10 34.94 3.16
944 952 4.807304 ACGTACGCTCGAATGGATTTTAAT 59.193 37.500 16.72 0.00 34.70 1.40
948 956 7.317269 CGTACGCTCGAATGGATTTTAATTAAC 59.683 37.037 0.52 0.00 0.00 2.01
949 957 7.316544 ACGCTCGAATGGATTTTAATTAACT 57.683 32.000 0.00 0.00 0.00 2.24
993 1001 1.108776 CACCTTCCCCGATCTCGTTA 58.891 55.000 0.00 0.00 37.74 3.18
1005 1013 2.724977 TCTCGTTATGATCGATGGCC 57.275 50.000 0.54 0.00 36.73 5.36
1006 1014 1.068541 TCTCGTTATGATCGATGGCCG 60.069 52.381 0.54 0.00 36.73 6.13
1008 1016 1.626654 CGTTATGATCGATGGCCGGC 61.627 60.000 21.18 21.18 39.14 6.13
1025 1041 2.571757 CCGTGTAGCAGCGAGGAA 59.428 61.111 0.00 0.00 0.00 3.36
1026 1042 1.805945 CCGTGTAGCAGCGAGGAAC 60.806 63.158 0.00 0.00 0.00 3.62
1033 1049 1.927895 AGCAGCGAGGAACGAATTAG 58.072 50.000 0.00 0.00 45.77 1.73
1035 1051 2.094182 AGCAGCGAGGAACGAATTAGAA 60.094 45.455 0.00 0.00 45.77 2.10
1051 1067 1.374252 GAACATGACGGTGTCGCCT 60.374 57.895 0.00 0.00 40.63 5.52
1233 1249 2.664081 GCACCCTGTCCCCTCTCTG 61.664 68.421 0.00 0.00 0.00 3.35
1234 1250 1.079256 CACCCTGTCCCCTCTCTGA 59.921 63.158 0.00 0.00 0.00 3.27
1927 1952 2.443394 GCATCCCATCCCGGACAGA 61.443 63.158 0.73 0.00 36.56 3.41
1979 2004 3.838271 GGCGCACGATCCTGGAGA 61.838 66.667 10.83 0.00 0.00 3.71
1981 2006 3.069980 GCGCACGATCCTGGAGACT 62.070 63.158 0.30 0.00 0.00 3.24
1993 2018 2.353607 GAGACTATGGACGGCGCG 60.354 66.667 6.90 0.00 0.00 6.86
2203 2228 3.822192 CCGGAGCCGACGATGACA 61.822 66.667 11.05 0.00 42.83 3.58
2230 2255 1.516603 GAAGCGGTACTCGGACAGC 60.517 63.158 0.00 0.00 40.37 4.40
2257 2282 2.125512 GGGTTGCGCTCGATCAGT 60.126 61.111 9.73 0.00 0.00 3.41
2329 2354 1.063867 ACGTAGTCCAGGAGGTAGCAT 60.064 52.381 0.00 0.00 29.74 3.79
2441 2477 1.618343 TGCTGGTTGATCTCGAGTGAA 59.382 47.619 13.13 0.90 0.00 3.18
2443 2479 3.265791 GCTGGTTGATCTCGAGTGAATT 58.734 45.455 13.13 0.00 0.00 2.17
2445 2481 4.870426 GCTGGTTGATCTCGAGTGAATTAA 59.130 41.667 13.13 0.00 0.00 1.40
2455 2491 5.807520 TCTCGAGTGAATTAACTTGCTGATC 59.192 40.000 13.13 0.00 32.39 2.92
2456 2492 5.724328 TCGAGTGAATTAACTTGCTGATCT 58.276 37.500 5.37 0.00 32.39 2.75
2457 2493 5.807520 TCGAGTGAATTAACTTGCTGATCTC 59.192 40.000 5.37 0.00 32.39 2.75
2458 2494 5.006165 CGAGTGAATTAACTTGCTGATCTCC 59.994 44.000 0.00 0.00 0.00 3.71
2459 2495 5.189180 AGTGAATTAACTTGCTGATCTCCC 58.811 41.667 0.00 0.00 0.00 4.30
2460 2496 4.034510 GTGAATTAACTTGCTGATCTCCCG 59.965 45.833 0.00 0.00 0.00 5.14
2461 2497 2.691409 TTAACTTGCTGATCTCCCGG 57.309 50.000 0.00 0.00 0.00 5.73
2462 2498 0.830648 TAACTTGCTGATCTCCCGGG 59.169 55.000 16.85 16.85 0.00 5.73
2463 2499 2.203126 CTTGCTGATCTCCCGGGC 60.203 66.667 18.49 1.20 0.00 6.13
2464 2500 3.008517 TTGCTGATCTCCCGGGCA 61.009 61.111 18.49 7.04 0.00 5.36
2465 2501 2.541547 CTTGCTGATCTCCCGGGCAA 62.542 60.000 18.49 13.77 39.99 4.52
2466 2502 2.514824 GCTGATCTCCCGGGCAAC 60.515 66.667 18.49 7.75 0.00 4.17
2469 2505 0.745845 CTGATCTCCCGGGCAACAAG 60.746 60.000 18.49 7.89 39.74 3.16
2473 2509 4.278513 TCCCGGGCAACAAGTGGG 62.279 66.667 18.49 0.00 41.43 4.61
2504 2540 0.613260 TAGGTGCACTGGGTTAGCTG 59.387 55.000 17.98 0.00 0.00 4.24
2510 2546 0.905357 CACTGGGTTAGCTGGCTAGT 59.095 55.000 0.00 0.00 0.00 2.57
2515 2551 3.112263 TGGGTTAGCTGGCTAGTTGTAT 58.888 45.455 0.00 0.00 0.00 2.29
2534 2572 2.992124 TGTTTGTGTCGGGAAGAAGA 57.008 45.000 0.00 0.00 0.00 2.87
2551 2589 4.900684 AGAAGAAGGGTTTTGTAGCTCTC 58.099 43.478 0.00 0.00 0.00 3.20
2591 2632 0.677842 GTATATATAGGCGGCCGGGG 59.322 60.000 29.38 0.00 0.00 5.73
2609 2650 2.681778 CGGGGCAGTCCAGTCTCT 60.682 66.667 0.00 0.00 37.22 3.10
2627 2668 7.363880 CCAGTCTCTAGTGTGGAAGCTAAATTA 60.364 40.741 0.00 0.00 31.04 1.40
2639 2680 2.879026 AGCTAAATTAAAGGCCTAGCGC 59.121 45.455 5.16 0.00 39.93 5.92
2640 2681 2.616842 GCTAAATTAAAGGCCTAGCGCA 59.383 45.455 5.16 0.00 40.31 6.09
2656 2697 2.256158 CACGCACCTGCATGTTGG 59.744 61.111 0.00 0.00 42.21 3.77
2660 2701 1.069427 GCACCTGCATGTTGGCAAA 59.931 52.632 0.00 0.00 44.40 3.68
2668 2709 1.769733 CATGTTGGCAAAGTGGAACG 58.230 50.000 0.00 0.00 45.86 3.95
2669 2710 0.031994 ATGTTGGCAAAGTGGAACGC 59.968 50.000 0.00 0.00 45.86 4.84
2692 2733 2.316108 GAAGGAAAAGGAAAGGTGGCA 58.684 47.619 0.00 0.00 0.00 4.92
2701 2742 0.319813 GAAAGGTGGCAAGCGCAAAT 60.320 50.000 11.47 0.00 41.24 2.32
2704 2745 1.216178 GGTGGCAAGCGCAAATCAT 59.784 52.632 11.47 0.00 41.24 2.45
2706 2747 1.431496 GTGGCAAGCGCAAATCATTT 58.569 45.000 11.47 0.00 41.24 2.32
2707 2748 2.605030 GTGGCAAGCGCAAATCATTTA 58.395 42.857 11.47 0.00 41.24 1.40
2708 2749 2.345341 GTGGCAAGCGCAAATCATTTAC 59.655 45.455 11.47 0.00 41.24 2.01
2709 2750 2.230992 TGGCAAGCGCAAATCATTTACT 59.769 40.909 11.47 0.00 41.24 2.24
2710 2751 3.253230 GGCAAGCGCAAATCATTTACTT 58.747 40.909 11.47 0.00 41.24 2.24
2711 2752 3.304293 GGCAAGCGCAAATCATTTACTTC 59.696 43.478 11.47 0.00 41.24 3.01
2712 2753 4.168760 GCAAGCGCAAATCATTTACTTCT 58.831 39.130 11.47 0.00 38.36 2.85
2713 2754 4.263911 GCAAGCGCAAATCATTTACTTCTC 59.736 41.667 11.47 0.00 38.36 2.87
2714 2755 5.634896 CAAGCGCAAATCATTTACTTCTCT 58.365 37.500 11.47 0.00 0.00 3.10
2715 2756 5.886960 AGCGCAAATCATTTACTTCTCTT 57.113 34.783 11.47 0.00 0.00 2.85
2716 2757 6.259550 AGCGCAAATCATTTACTTCTCTTT 57.740 33.333 11.47 0.00 0.00 2.52
2717 2758 7.377766 AGCGCAAATCATTTACTTCTCTTTA 57.622 32.000 11.47 0.00 0.00 1.85
2718 2759 7.989826 AGCGCAAATCATTTACTTCTCTTTAT 58.010 30.769 11.47 0.00 0.00 1.40
2719 2760 8.462016 AGCGCAAATCATTTACTTCTCTTTATT 58.538 29.630 11.47 0.00 0.00 1.40
2720 2761 9.076596 GCGCAAATCATTTACTTCTCTTTATTT 57.923 29.630 0.30 0.00 0.00 1.40
2744 2785 5.769484 TTTCTGTCTCGTTAAGTCTCAGT 57.231 39.130 0.00 0.00 0.00 3.41
2745 2786 5.359716 TTCTGTCTCGTTAAGTCTCAGTC 57.640 43.478 0.00 0.00 0.00 3.51
2746 2787 3.432592 TCTGTCTCGTTAAGTCTCAGTCG 59.567 47.826 0.00 0.00 0.00 4.18
2747 2788 3.396560 TGTCTCGTTAAGTCTCAGTCGA 58.603 45.455 0.00 0.00 0.00 4.20
2748 2789 3.186001 TGTCTCGTTAAGTCTCAGTCGAC 59.814 47.826 7.70 7.70 0.00 4.20
2749 2790 3.432933 GTCTCGTTAAGTCTCAGTCGACT 59.567 47.826 13.58 13.58 45.73 4.18
2750 2791 3.679025 TCTCGTTAAGTCTCAGTCGACTC 59.321 47.826 16.96 4.27 43.14 3.36
2751 2792 2.411069 TCGTTAAGTCTCAGTCGACTCG 59.589 50.000 16.96 12.90 43.14 4.18
2752 2793 2.507866 GTTAAGTCTCAGTCGACTCGC 58.492 52.381 16.96 6.11 43.14 5.03
2753 2794 2.096220 TAAGTCTCAGTCGACTCGCT 57.904 50.000 16.96 8.40 43.14 4.93
2754 2795 0.800012 AAGTCTCAGTCGACTCGCTC 59.200 55.000 16.96 7.14 43.14 5.03
2755 2796 0.036765 AGTCTCAGTCGACTCGCTCT 60.037 55.000 16.96 9.37 40.04 4.09
2756 2797 1.205179 AGTCTCAGTCGACTCGCTCTA 59.795 52.381 16.96 0.00 40.04 2.43
2757 2798 2.159014 AGTCTCAGTCGACTCGCTCTAT 60.159 50.000 16.96 0.00 40.04 1.98
2758 2799 2.220133 GTCTCAGTCGACTCGCTCTATC 59.780 54.545 16.96 0.00 0.00 2.08
2759 2800 2.101750 TCTCAGTCGACTCGCTCTATCT 59.898 50.000 16.96 0.00 0.00 1.98
2760 2801 2.205911 TCAGTCGACTCGCTCTATCTG 58.794 52.381 16.96 1.05 0.00 2.90
2761 2802 1.937223 CAGTCGACTCGCTCTATCTGT 59.063 52.381 16.96 0.00 0.00 3.41
2762 2803 1.937223 AGTCGACTCGCTCTATCTGTG 59.063 52.381 13.58 0.00 0.00 3.66
2763 2804 1.934525 GTCGACTCGCTCTATCTGTGA 59.065 52.381 8.70 0.00 0.00 3.58
2764 2805 2.033236 GTCGACTCGCTCTATCTGTGAG 60.033 54.545 8.70 0.00 44.76 3.51
2765 2806 2.159085 TCGACTCGCTCTATCTGTGAGA 60.159 50.000 10.66 0.00 42.68 3.27
2766 2807 2.805671 CGACTCGCTCTATCTGTGAGAT 59.194 50.000 10.66 0.00 42.68 2.75
2767 2808 3.120683 CGACTCGCTCTATCTGTGAGATC 60.121 52.174 10.66 0.00 42.68 2.75
2768 2809 4.065088 GACTCGCTCTATCTGTGAGATCT 58.935 47.826 10.66 0.00 42.68 2.75
2769 2810 4.460263 ACTCGCTCTATCTGTGAGATCTT 58.540 43.478 10.66 0.00 42.68 2.40
2770 2811 5.616270 ACTCGCTCTATCTGTGAGATCTTA 58.384 41.667 10.66 0.00 42.68 2.10
2771 2812 5.468746 ACTCGCTCTATCTGTGAGATCTTAC 59.531 44.000 10.60 10.60 42.68 2.34
2772 2813 5.368989 TCGCTCTATCTGTGAGATCTTACA 58.631 41.667 18.35 18.35 36.20 2.41
2773 2814 6.000840 TCGCTCTATCTGTGAGATCTTACAT 58.999 40.000 19.53 9.48 36.20 2.29
2774 2815 6.072783 TCGCTCTATCTGTGAGATCTTACATG 60.073 42.308 19.53 13.70 36.20 3.21
2775 2816 6.072783 CGCTCTATCTGTGAGATCTTACATGA 60.073 42.308 19.53 17.69 36.20 3.07
2776 2817 7.521261 CGCTCTATCTGTGAGATCTTACATGAA 60.521 40.741 19.53 9.70 36.20 2.57
2777 2818 8.140628 GCTCTATCTGTGAGATCTTACATGAAA 58.859 37.037 19.53 7.50 36.20 2.69
2781 2822 8.674263 ATCTGTGAGATCTTACATGAAAATCC 57.326 34.615 19.53 0.00 25.75 3.01
2782 2823 7.623630 TCTGTGAGATCTTACATGAAAATCCA 58.376 34.615 19.53 0.00 0.00 3.41
2783 2824 8.270030 TCTGTGAGATCTTACATGAAAATCCAT 58.730 33.333 19.53 0.00 0.00 3.41
2784 2825 8.217131 TGTGAGATCTTACATGAAAATCCATG 57.783 34.615 15.83 0.00 46.90 3.66
2835 2876 3.541071 TTTTGCATGTCATGTCACTCG 57.459 42.857 14.26 0.00 0.00 4.18
2836 2877 2.453983 TTGCATGTCATGTCACTCGA 57.546 45.000 14.26 0.00 0.00 4.04
2837 2878 2.678471 TGCATGTCATGTCACTCGAT 57.322 45.000 14.26 0.00 0.00 3.59
2838 2879 2.543641 TGCATGTCATGTCACTCGATC 58.456 47.619 14.26 0.00 0.00 3.69
2839 2880 1.520174 GCATGTCATGTCACTCGATCG 59.480 52.381 9.36 9.36 0.00 3.69
2841 2882 2.832672 TGTCATGTCACTCGATCGAG 57.167 50.000 36.95 36.95 46.91 4.04
2843 2884 2.096013 TGTCATGTCACTCGATCGAGAC 59.904 50.000 42.97 32.58 44.53 3.36
2844 2885 2.353269 GTCATGTCACTCGATCGAGACT 59.647 50.000 42.97 24.63 44.53 3.24
2845 2886 3.010420 TCATGTCACTCGATCGAGACTT 58.990 45.455 42.97 28.22 44.53 3.01
2846 2887 2.902065 TGTCACTCGATCGAGACTTG 57.098 50.000 42.97 31.84 44.53 3.16
2847 2888 1.468914 TGTCACTCGATCGAGACTTGG 59.531 52.381 42.97 27.00 44.53 3.61
2849 2890 2.095161 GTCACTCGATCGAGACTTGGTT 60.095 50.000 42.97 21.83 44.53 3.67
2851 2892 3.754850 TCACTCGATCGAGACTTGGTTAA 59.245 43.478 42.97 17.73 44.53 2.01
2852 2893 4.216902 TCACTCGATCGAGACTTGGTTAAA 59.783 41.667 42.97 17.41 44.53 1.52
2853 2894 5.103000 CACTCGATCGAGACTTGGTTAAAT 58.897 41.667 42.97 19.26 44.53 1.40
2854 2895 5.230306 CACTCGATCGAGACTTGGTTAAATC 59.770 44.000 42.97 0.00 44.53 2.17
2855 2896 5.125739 ACTCGATCGAGACTTGGTTAAATCT 59.874 40.000 42.97 18.66 44.53 2.40
2856 2897 5.962433 TCGATCGAGACTTGGTTAAATCTT 58.038 37.500 15.15 0.00 0.00 2.40
2858 2899 5.005779 CGATCGAGACTTGGTTAAATCTTGG 59.994 44.000 10.26 0.00 0.00 3.61
2859 2900 5.223449 TCGAGACTTGGTTAAATCTTGGT 57.777 39.130 0.00 0.00 0.00 3.67
2864 2905 7.308589 CGAGACTTGGTTAAATCTTGGTCAAAT 60.309 37.037 0.00 0.00 0.00 2.32
2865 2906 7.661040 AGACTTGGTTAAATCTTGGTCAAATG 58.339 34.615 0.00 0.00 0.00 2.32
2867 2908 7.661040 ACTTGGTTAAATCTTGGTCAAATGAG 58.339 34.615 0.00 0.00 0.00 2.90
2868 2909 7.287696 ACTTGGTTAAATCTTGGTCAAATGAGT 59.712 33.333 0.00 0.00 0.00 3.41
2869 2910 7.214467 TGGTTAAATCTTGGTCAAATGAGTC 57.786 36.000 0.00 0.00 0.00 3.36
2871 2912 6.434340 GGTTAAATCTTGGTCAAATGAGTCCT 59.566 38.462 0.00 0.00 0.00 3.85
2874 2915 7.693969 AAATCTTGGTCAAATGAGTCCTAAG 57.306 36.000 0.00 0.00 0.00 2.18
2875 2916 4.579869 TCTTGGTCAAATGAGTCCTAAGC 58.420 43.478 0.00 0.00 0.00 3.09
2876 2917 4.041567 TCTTGGTCAAATGAGTCCTAAGCA 59.958 41.667 0.00 0.00 0.00 3.91
2877 2918 3.674997 TGGTCAAATGAGTCCTAAGCAC 58.325 45.455 0.00 0.00 0.00 4.40
2878 2919 2.673368 GGTCAAATGAGTCCTAAGCACG 59.327 50.000 0.00 0.00 0.00 5.34
2879 2920 2.094417 GTCAAATGAGTCCTAAGCACGC 59.906 50.000 0.00 0.00 0.00 5.34
2880 2921 1.398390 CAAATGAGTCCTAAGCACGCC 59.602 52.381 0.00 0.00 0.00 5.68
2881 2922 0.107654 AATGAGTCCTAAGCACGCCC 60.108 55.000 0.00 0.00 0.00 6.13
2882 2923 0.978146 ATGAGTCCTAAGCACGCCCT 60.978 55.000 0.00 0.00 0.00 5.19
2884 2925 0.102663 GAGTCCTAAGCACGCCCTAC 59.897 60.000 0.00 0.00 0.00 3.18
2885 2926 0.613853 AGTCCTAAGCACGCCCTACA 60.614 55.000 0.00 0.00 0.00 2.74
2887 2928 1.134491 GTCCTAAGCACGCCCTACATT 60.134 52.381 0.00 0.00 0.00 2.71
2888 2929 1.557832 TCCTAAGCACGCCCTACATTT 59.442 47.619 0.00 0.00 0.00 2.32
2889 2930 2.026636 TCCTAAGCACGCCCTACATTTT 60.027 45.455 0.00 0.00 0.00 1.82
2911 2952 6.926630 TTTTGGCTGGAAACCATTATTACT 57.073 33.333 0.00 0.00 36.96 2.24
2921 3161 9.084533 TGGAAACCATTATTACTATTTATGGGC 57.915 33.333 0.00 0.00 40.01 5.36
2926 3166 9.959721 ACCATTATTACTATTTATGGGCTGTAG 57.040 33.333 0.00 0.00 40.01 2.74
2927 3167 8.893727 CCATTATTACTATTTATGGGCTGTAGC 58.106 37.037 0.00 0.00 41.14 3.58
2939 3179 0.947244 GCTGTAGCCATGATTTCCGG 59.053 55.000 0.00 0.00 34.31 5.14
2940 3180 1.475034 GCTGTAGCCATGATTTCCGGA 60.475 52.381 0.00 0.00 34.31 5.14
2941 3181 2.811873 GCTGTAGCCATGATTTCCGGAT 60.812 50.000 4.15 0.00 34.31 4.18
2942 3182 2.810274 CTGTAGCCATGATTTCCGGATG 59.190 50.000 4.15 0.00 0.00 3.51
2944 3184 2.442236 AGCCATGATTTCCGGATGTT 57.558 45.000 4.15 0.00 0.00 2.71
2945 3185 2.738743 AGCCATGATTTCCGGATGTTT 58.261 42.857 4.15 0.00 0.00 2.83
2946 3186 3.099141 AGCCATGATTTCCGGATGTTTT 58.901 40.909 4.15 0.00 0.00 2.43
2947 3187 3.119029 AGCCATGATTTCCGGATGTTTTG 60.119 43.478 4.15 0.75 0.00 2.44
2948 3188 3.784338 CCATGATTTCCGGATGTTTTGG 58.216 45.455 4.15 6.93 0.00 3.28
2949 3189 3.189285 CATGATTTCCGGATGTTTTGGC 58.811 45.455 4.15 0.00 0.00 4.52
2950 3190 1.548269 TGATTTCCGGATGTTTTGGCC 59.452 47.619 4.15 0.00 0.00 5.36
2951 3191 1.824852 GATTTCCGGATGTTTTGGCCT 59.175 47.619 4.15 0.00 0.00 5.19
2952 3192 2.588464 TTTCCGGATGTTTTGGCCTA 57.412 45.000 4.15 0.00 0.00 3.93
2953 3193 2.818751 TTCCGGATGTTTTGGCCTAT 57.181 45.000 4.15 0.00 0.00 2.57
2954 3194 3.935818 TTCCGGATGTTTTGGCCTATA 57.064 42.857 4.15 0.00 0.00 1.31
2955 3195 3.485463 TCCGGATGTTTTGGCCTATAG 57.515 47.619 0.00 0.00 0.00 1.31
2956 3196 2.105821 TCCGGATGTTTTGGCCTATAGG 59.894 50.000 15.01 15.01 38.53 2.57
2957 3197 2.105821 CCGGATGTTTTGGCCTATAGGA 59.894 50.000 23.61 0.00 37.39 2.94
2958 3198 3.434453 CCGGATGTTTTGGCCTATAGGAA 60.434 47.826 23.61 5.87 37.39 3.36
2959 3199 4.398319 CGGATGTTTTGGCCTATAGGAAT 58.602 43.478 23.61 3.55 37.39 3.01
2960 3200 4.827284 CGGATGTTTTGGCCTATAGGAATT 59.173 41.667 23.61 0.13 37.39 2.17
2961 3201 5.301805 CGGATGTTTTGGCCTATAGGAATTT 59.698 40.000 23.61 0.00 37.39 1.82
2962 3202 6.183360 CGGATGTTTTGGCCTATAGGAATTTT 60.183 38.462 23.61 0.00 37.39 1.82
2963 3203 7.013846 CGGATGTTTTGGCCTATAGGAATTTTA 59.986 37.037 23.61 2.91 37.39 1.52
2964 3204 8.870116 GGATGTTTTGGCCTATAGGAATTTTAT 58.130 33.333 23.61 7.59 37.39 1.40
2967 3207 9.362151 TGTTTTGGCCTATAGGAATTTTATAGG 57.638 33.333 23.61 21.51 46.87 2.57
3010 3250 6.976934 TTTTTCTAGAGCCCTTTGATTTGT 57.023 33.333 0.00 0.00 0.00 2.83
3012 3252 7.687941 TTTTCTAGAGCCCTTTGATTTGTAG 57.312 36.000 0.00 0.00 0.00 2.74
3013 3253 5.359194 TCTAGAGCCCTTTGATTTGTAGG 57.641 43.478 0.00 0.00 0.00 3.18
3014 3254 5.030147 TCTAGAGCCCTTTGATTTGTAGGA 58.970 41.667 0.00 0.00 0.00 2.94
3015 3255 4.657814 AGAGCCCTTTGATTTGTAGGAA 57.342 40.909 0.00 0.00 0.00 3.36
3016 3256 4.998051 AGAGCCCTTTGATTTGTAGGAAA 58.002 39.130 0.00 0.00 0.00 3.13
3017 3257 5.583932 AGAGCCCTTTGATTTGTAGGAAAT 58.416 37.500 0.00 0.00 0.00 2.17
3018 3258 6.019108 AGAGCCCTTTGATTTGTAGGAAATT 58.981 36.000 0.00 0.00 0.00 1.82
3019 3259 6.041423 AGCCCTTTGATTTGTAGGAAATTG 57.959 37.500 0.00 0.00 0.00 2.32
3020 3260 5.779771 AGCCCTTTGATTTGTAGGAAATTGA 59.220 36.000 0.00 0.00 0.00 2.57
3021 3261 6.441604 AGCCCTTTGATTTGTAGGAAATTGAT 59.558 34.615 0.00 0.00 0.00 2.57
3022 3262 7.038088 AGCCCTTTGATTTGTAGGAAATTGATT 60.038 33.333 0.00 0.00 0.00 2.57
3023 3263 7.607607 GCCCTTTGATTTGTAGGAAATTGATTT 59.392 33.333 0.00 0.00 0.00 2.17
3024 3264 9.154847 CCCTTTGATTTGTAGGAAATTGATTTC 57.845 33.333 7.73 7.73 44.08 2.17
3025 3265 9.933723 CCTTTGATTTGTAGGAAATTGATTTCT 57.066 29.630 14.20 5.47 44.21 2.52
3090 3330 3.695830 AAAATGTTAGCCCAGACTCGA 57.304 42.857 0.00 0.00 0.00 4.04
3091 3331 3.914426 AAATGTTAGCCCAGACTCGAT 57.086 42.857 0.00 0.00 0.00 3.59
3092 3332 5.353394 AAAATGTTAGCCCAGACTCGATA 57.647 39.130 0.00 0.00 0.00 2.92
3093 3333 4.592485 AATGTTAGCCCAGACTCGATAG 57.408 45.455 0.00 0.00 0.00 2.08
3111 3351 7.764695 TCGATAGAAAATTTTCGTCTATGCA 57.235 32.000 21.98 0.00 46.15 3.96
3112 3352 8.365399 TCGATAGAAAATTTTCGTCTATGCAT 57.635 30.769 21.98 3.79 46.15 3.96
3113 3353 9.471084 TCGATAGAAAATTTTCGTCTATGCATA 57.529 29.630 21.98 6.20 46.15 3.14
3114 3354 9.517361 CGATAGAAAATTTTCGTCTATGCATAC 57.483 33.333 21.98 0.00 41.92 2.39
3115 3355 9.813080 GATAGAAAATTTTCGTCTATGCATACC 57.187 33.333 21.98 0.00 41.92 2.73
3116 3356 6.715464 AGAAAATTTTCGTCTATGCATACCG 58.285 36.000 21.98 8.39 41.92 4.02
3117 3357 6.315393 AGAAAATTTTCGTCTATGCATACCGT 59.685 34.615 21.98 0.00 41.92 4.83
3118 3358 5.652744 AATTTTCGTCTATGCATACCGTC 57.347 39.130 16.44 1.90 0.00 4.79
3119 3359 2.787601 TTCGTCTATGCATACCGTCC 57.212 50.000 16.44 0.00 0.00 4.79
3120 3360 0.956633 TCGTCTATGCATACCGTCCC 59.043 55.000 16.44 0.00 0.00 4.46
3121 3361 0.959553 CGTCTATGCATACCGTCCCT 59.040 55.000 1.16 0.00 0.00 4.20
3122 3362 2.156917 CGTCTATGCATACCGTCCCTA 58.843 52.381 1.16 0.00 0.00 3.53
3123 3363 2.753452 CGTCTATGCATACCGTCCCTAT 59.247 50.000 1.16 0.00 0.00 2.57
3124 3364 3.943381 CGTCTATGCATACCGTCCCTATA 59.057 47.826 1.16 0.00 0.00 1.31
3125 3365 4.035324 CGTCTATGCATACCGTCCCTATAG 59.965 50.000 1.16 0.00 0.00 1.31
3126 3366 5.191426 GTCTATGCATACCGTCCCTATAGA 58.809 45.833 1.16 0.00 0.00 1.98
3127 3367 5.651139 GTCTATGCATACCGTCCCTATAGAA 59.349 44.000 1.16 0.00 30.25 2.10
3128 3368 6.152323 GTCTATGCATACCGTCCCTATAGAAA 59.848 42.308 1.16 0.00 30.25 2.52
3129 3369 6.895756 TCTATGCATACCGTCCCTATAGAAAT 59.104 38.462 1.16 0.00 0.00 2.17
3130 3370 8.057011 TCTATGCATACCGTCCCTATAGAAATA 58.943 37.037 1.16 0.00 0.00 1.40
3131 3371 7.676683 ATGCATACCGTCCCTATAGAAATAT 57.323 36.000 0.00 0.00 0.00 1.28
3132 3372 6.873997 TGCATACCGTCCCTATAGAAATATG 58.126 40.000 0.00 2.51 0.00 1.78
3133 3373 6.439375 TGCATACCGTCCCTATAGAAATATGT 59.561 38.462 0.00 0.00 0.00 2.29
3134 3374 6.979238 GCATACCGTCCCTATAGAAATATGTC 59.021 42.308 0.00 0.00 0.00 3.06
3135 3375 7.363530 GCATACCGTCCCTATAGAAATATGTCA 60.364 40.741 0.00 0.00 0.00 3.58
3136 3376 8.696374 CATACCGTCCCTATAGAAATATGTCAT 58.304 37.037 0.00 0.00 0.00 3.06
3137 3377 7.171630 ACCGTCCCTATAGAAATATGTCATC 57.828 40.000 0.00 0.00 0.00 2.92
3138 3378 6.724441 ACCGTCCCTATAGAAATATGTCATCA 59.276 38.462 0.00 0.00 0.00 3.07
3139 3379 7.093727 ACCGTCCCTATAGAAATATGTCATCAG 60.094 40.741 0.00 0.00 0.00 2.90
3140 3380 7.122799 CCGTCCCTATAGAAATATGTCATCAGA 59.877 40.741 0.00 0.00 0.00 3.27
3141 3381 7.971168 CGTCCCTATAGAAATATGTCATCAGAC 59.029 40.741 0.00 0.00 45.19 3.51
3142 3382 9.030452 GTCCCTATAGAAATATGTCATCAGACT 57.970 37.037 0.00 0.00 45.20 3.24
3143 3383 9.607333 TCCCTATAGAAATATGTCATCAGACTT 57.393 33.333 0.00 0.00 45.20 3.01
3151 3391 8.955061 AAATATGTCATCAGACTTTTCAAACG 57.045 30.769 0.00 0.00 45.20 3.60
3152 3392 7.905604 ATATGTCATCAGACTTTTCAAACGA 57.094 32.000 0.00 0.00 45.20 3.85
3153 3393 5.657470 TGTCATCAGACTTTTCAAACGAG 57.343 39.130 0.00 0.00 45.20 4.18
3154 3394 4.511454 TGTCATCAGACTTTTCAAACGAGG 59.489 41.667 0.00 0.00 45.20 4.63
3155 3395 3.498397 TCATCAGACTTTTCAAACGAGGC 59.502 43.478 0.00 0.00 0.00 4.70
3156 3396 2.218603 TCAGACTTTTCAAACGAGGCC 58.781 47.619 0.00 0.00 0.00 5.19
3157 3397 2.158813 TCAGACTTTTCAAACGAGGCCT 60.159 45.455 3.86 3.86 0.00 5.19
3158 3398 2.618709 CAGACTTTTCAAACGAGGCCTT 59.381 45.455 6.77 0.00 0.00 4.35
3159 3399 3.066760 CAGACTTTTCAAACGAGGCCTTT 59.933 43.478 6.77 0.00 0.00 3.11
3160 3400 3.066760 AGACTTTTCAAACGAGGCCTTTG 59.933 43.478 6.77 8.21 0.00 2.77
3161 3401 2.100749 ACTTTTCAAACGAGGCCTTTGG 59.899 45.455 6.77 1.63 30.78 3.28
3162 3402 1.770294 TTTCAAACGAGGCCTTTGGT 58.230 45.000 6.77 2.40 30.78 3.67
3163 3403 1.314730 TTCAAACGAGGCCTTTGGTC 58.685 50.000 6.77 0.00 30.78 4.02
3164 3404 0.472471 TCAAACGAGGCCTTTGGTCT 59.528 50.000 6.77 0.00 42.15 3.85
3165 3405 1.133915 TCAAACGAGGCCTTTGGTCTT 60.134 47.619 6.77 1.05 38.01 3.01
3166 3406 1.681264 CAAACGAGGCCTTTGGTCTTT 59.319 47.619 6.77 0.00 38.01 2.52
3167 3407 1.318576 AACGAGGCCTTTGGTCTTTG 58.681 50.000 6.77 0.00 38.01 2.77
3168 3408 0.537371 ACGAGGCCTTTGGTCTTTGG 60.537 55.000 6.77 0.00 38.01 3.28
3169 3409 0.250727 CGAGGCCTTTGGTCTTTGGA 60.251 55.000 6.77 0.00 38.01 3.53
3170 3410 1.539157 GAGGCCTTTGGTCTTTGGAG 58.461 55.000 6.77 0.00 38.01 3.86
3171 3411 1.073923 GAGGCCTTTGGTCTTTGGAGA 59.926 52.381 6.77 0.00 38.01 3.71
3172 3412 1.074566 AGGCCTTTGGTCTTTGGAGAG 59.925 52.381 0.00 0.00 31.15 3.20
3173 3413 1.073923 GGCCTTTGGTCTTTGGAGAGA 59.926 52.381 0.00 0.00 31.07 3.10
3178 3418 2.814280 TGGTCTTTGGAGAGACGTTC 57.186 50.000 0.00 0.00 45.53 3.95
3179 3419 2.317040 TGGTCTTTGGAGAGACGTTCT 58.683 47.619 0.00 0.00 45.53 3.01
3191 3431 5.707242 AGAGACGTTCTCAAGTGATACAA 57.293 39.130 14.62 0.00 45.73 2.41
3192 3432 6.274157 AGAGACGTTCTCAAGTGATACAAT 57.726 37.500 14.62 0.00 45.73 2.71
3193 3433 7.392494 AGAGACGTTCTCAAGTGATACAATA 57.608 36.000 14.62 0.00 45.73 1.90
3194 3434 8.001881 AGAGACGTTCTCAAGTGATACAATAT 57.998 34.615 14.62 0.00 45.73 1.28
3196 3436 9.171701 GAGACGTTCTCAAGTGATACAATATAC 57.828 37.037 9.30 0.00 42.90 1.47
3197 3437 8.683615 AGACGTTCTCAAGTGATACAATATACA 58.316 33.333 0.00 0.00 0.00 2.29
3198 3438 9.297586 GACGTTCTCAAGTGATACAATATACAA 57.702 33.333 0.00 0.00 0.00 2.41
3199 3439 9.817809 ACGTTCTCAAGTGATACAATATACAAT 57.182 29.630 0.00 0.00 0.00 2.71
3203 3443 9.929180 TCTCAAGTGATACAATATACAATAGGC 57.071 33.333 0.00 0.00 0.00 3.93
3204 3444 9.155975 CTCAAGTGATACAATATACAATAGGCC 57.844 37.037 0.00 0.00 0.00 5.19
3205 3445 8.880244 TCAAGTGATACAATATACAATAGGCCT 58.120 33.333 11.78 11.78 0.00 5.19
3213 3453 8.728596 ACAATATACAATAGGCCTAAGAGACT 57.271 34.615 18.42 0.00 0.00 3.24
3214 3454 8.808092 ACAATATACAATAGGCCTAAGAGACTC 58.192 37.037 18.42 0.00 0.00 3.36
3215 3455 7.964666 ATATACAATAGGCCTAAGAGACTCC 57.035 40.000 18.42 0.00 0.00 3.85
3216 3456 3.995636 ACAATAGGCCTAAGAGACTCCA 58.004 45.455 18.42 0.00 0.00 3.86
3217 3457 3.964031 ACAATAGGCCTAAGAGACTCCAG 59.036 47.826 18.42 0.00 0.00 3.86
3218 3458 2.074729 TAGGCCTAAGAGACTCCAGC 57.925 55.000 10.98 0.00 0.00 4.85
3219 3459 0.041833 AGGCCTAAGAGACTCCAGCA 59.958 55.000 1.29 0.00 0.00 4.41
3220 3460 0.463620 GGCCTAAGAGACTCCAGCAG 59.536 60.000 0.00 0.00 0.00 4.24
3229 3469 3.867771 CTCCAGCAGAGCGTTGAC 58.132 61.111 0.00 0.00 35.31 3.18
3230 3470 1.739562 CTCCAGCAGAGCGTTGACC 60.740 63.158 0.00 0.00 35.31 4.02
3231 3471 2.031012 CCAGCAGAGCGTTGACCA 59.969 61.111 0.00 0.00 0.00 4.02
3232 3472 1.597854 CCAGCAGAGCGTTGACCAA 60.598 57.895 0.00 0.00 0.00 3.67
3233 3473 0.957395 CCAGCAGAGCGTTGACCAAT 60.957 55.000 0.00 0.00 0.00 3.16
3234 3474 1.675714 CCAGCAGAGCGTTGACCAATA 60.676 52.381 0.00 0.00 0.00 1.90
3235 3475 1.662629 CAGCAGAGCGTTGACCAATAG 59.337 52.381 0.00 0.00 0.00 1.73
3236 3476 1.009829 GCAGAGCGTTGACCAATAGG 58.990 55.000 0.00 0.00 42.21 2.57
3237 3477 1.009829 CAGAGCGTTGACCAATAGGC 58.990 55.000 0.00 0.00 39.06 3.93
3238 3478 0.107654 AGAGCGTTGACCAATAGGCC 60.108 55.000 0.00 0.00 39.06 5.19
3239 3479 0.392461 GAGCGTTGACCAATAGGCCA 60.392 55.000 5.01 0.00 39.06 5.36
3240 3480 0.037590 AGCGTTGACCAATAGGCCAA 59.962 50.000 5.01 0.00 34.64 4.52
3241 3481 0.451783 GCGTTGACCAATAGGCCAAG 59.548 55.000 5.01 0.00 37.99 3.61
3242 3482 0.451783 CGTTGACCAATAGGCCAAGC 59.548 55.000 5.01 0.00 37.99 4.01
3254 3494 2.492019 GGCCAAGCCGTTTTATCATC 57.508 50.000 0.00 0.00 39.62 2.92
3255 3495 2.024414 GGCCAAGCCGTTTTATCATCT 58.976 47.619 0.00 0.00 39.62 2.90
3256 3496 3.211045 GGCCAAGCCGTTTTATCATCTA 58.789 45.455 0.00 0.00 39.62 1.98
3257 3497 3.630312 GGCCAAGCCGTTTTATCATCTAA 59.370 43.478 0.00 0.00 39.62 2.10
3258 3498 4.097286 GGCCAAGCCGTTTTATCATCTAAA 59.903 41.667 0.00 0.00 39.62 1.85
3259 3499 5.393678 GGCCAAGCCGTTTTATCATCTAAAA 60.394 40.000 0.00 0.00 39.62 1.52
3260 3500 6.096695 GCCAAGCCGTTTTATCATCTAAAAA 58.903 36.000 0.00 0.00 0.00 1.94
3279 3519 5.464030 AAAAATGAGCAGCTTCAGACATT 57.536 34.783 0.00 0.00 0.00 2.71
3280 3520 4.436242 AAATGAGCAGCTTCAGACATTG 57.564 40.909 6.97 0.00 0.00 2.82
3281 3521 1.817357 TGAGCAGCTTCAGACATTGG 58.183 50.000 0.00 0.00 0.00 3.16
3282 3522 0.450983 GAGCAGCTTCAGACATTGGC 59.549 55.000 0.00 0.00 0.00 4.52
3283 3523 0.251033 AGCAGCTTCAGACATTGGCA 60.251 50.000 0.00 0.00 0.00 4.92
3284 3524 0.815734 GCAGCTTCAGACATTGGCAT 59.184 50.000 0.00 0.00 0.00 4.40
3285 3525 1.202268 GCAGCTTCAGACATTGGCATC 60.202 52.381 0.00 0.00 0.00 3.91
3286 3526 1.404391 CAGCTTCAGACATTGGCATCC 59.596 52.381 0.00 0.00 0.00 3.51
3287 3527 1.284198 AGCTTCAGACATTGGCATCCT 59.716 47.619 0.00 0.00 0.00 3.24
3288 3528 1.404391 GCTTCAGACATTGGCATCCTG 59.596 52.381 0.00 0.00 0.00 3.86
3289 3529 1.404391 CTTCAGACATTGGCATCCTGC 59.596 52.381 0.00 0.00 44.08 4.85
3298 3538 4.904466 GCATCCTGCAGCCTTTTG 57.096 55.556 8.66 1.84 44.26 2.44
3299 3539 1.217244 GCATCCTGCAGCCTTTTGG 59.783 57.895 8.66 0.00 44.26 3.28
3300 3540 1.538687 GCATCCTGCAGCCTTTTGGT 61.539 55.000 8.66 0.00 44.26 3.67
3301 3541 0.971386 CATCCTGCAGCCTTTTGGTT 59.029 50.000 8.66 0.00 42.99 3.67
3308 3548 2.529780 CAGCCTTTTGGTTGCAATCA 57.470 45.000 8.71 8.71 43.66 2.57
3309 3549 2.409975 CAGCCTTTTGGTTGCAATCAG 58.590 47.619 13.02 2.25 43.66 2.90
3310 3550 2.036217 CAGCCTTTTGGTTGCAATCAGA 59.964 45.455 13.02 5.54 43.66 3.27
3311 3551 2.699846 AGCCTTTTGGTTGCAATCAGAA 59.300 40.909 13.02 13.75 42.99 3.02
3312 3552 3.325716 AGCCTTTTGGTTGCAATCAGAAT 59.674 39.130 15.32 0.00 42.99 2.40
3313 3553 4.067192 GCCTTTTGGTTGCAATCAGAATT 58.933 39.130 15.32 0.00 42.99 2.17
3314 3554 4.516321 GCCTTTTGGTTGCAATCAGAATTT 59.484 37.500 15.32 0.00 42.99 1.82
3315 3555 5.561339 GCCTTTTGGTTGCAATCAGAATTTG 60.561 40.000 15.32 8.89 42.99 2.32
3316 3556 5.528320 CCTTTTGGTTGCAATCAGAATTTGT 59.472 36.000 15.32 0.00 34.07 2.83
3317 3557 6.293027 CCTTTTGGTTGCAATCAGAATTTGTC 60.293 38.462 15.32 0.00 34.07 3.18
3318 3558 4.933505 TGGTTGCAATCAGAATTTGTCA 57.066 36.364 8.71 0.00 0.00 3.58
3319 3559 4.619973 TGGTTGCAATCAGAATTTGTCAC 58.380 39.130 8.71 0.00 0.00 3.67
3320 3560 4.099113 TGGTTGCAATCAGAATTTGTCACA 59.901 37.500 8.71 0.00 0.00 3.58
3321 3561 5.049167 GGTTGCAATCAGAATTTGTCACAA 58.951 37.500 4.39 0.00 0.00 3.33
3322 3562 5.176223 GGTTGCAATCAGAATTTGTCACAAG 59.824 40.000 4.39 0.00 0.00 3.16
3323 3563 4.873817 TGCAATCAGAATTTGTCACAAGG 58.126 39.130 0.00 0.00 0.00 3.61
3324 3564 4.240096 GCAATCAGAATTTGTCACAAGGG 58.760 43.478 0.00 0.00 0.00 3.95
3325 3565 4.022068 GCAATCAGAATTTGTCACAAGGGA 60.022 41.667 0.00 0.00 0.00 4.20
3326 3566 5.337009 GCAATCAGAATTTGTCACAAGGGAT 60.337 40.000 0.00 0.00 0.00 3.85
3327 3567 6.127647 GCAATCAGAATTTGTCACAAGGGATA 60.128 38.462 0.00 0.00 0.00 2.59
3328 3568 7.478322 CAATCAGAATTTGTCACAAGGGATAG 58.522 38.462 0.00 0.00 0.00 2.08
3329 3569 4.943705 TCAGAATTTGTCACAAGGGATAGC 59.056 41.667 0.00 0.00 0.00 2.97
3330 3570 4.701651 CAGAATTTGTCACAAGGGATAGCA 59.298 41.667 0.00 0.00 0.00 3.49
3331 3571 4.702131 AGAATTTGTCACAAGGGATAGCAC 59.298 41.667 0.00 0.00 0.00 4.40
3332 3572 2.093306 TTGTCACAAGGGATAGCACG 57.907 50.000 0.00 0.00 0.00 5.34
3333 3573 0.249120 TGTCACAAGGGATAGCACGG 59.751 55.000 0.00 0.00 0.00 4.94
3334 3574 0.535335 GTCACAAGGGATAGCACGGA 59.465 55.000 0.00 0.00 0.00 4.69
3335 3575 0.535335 TCACAAGGGATAGCACGGAC 59.465 55.000 0.00 0.00 0.00 4.79
3336 3576 0.537188 CACAAGGGATAGCACGGACT 59.463 55.000 0.00 0.00 0.00 3.85
3337 3577 0.537188 ACAAGGGATAGCACGGACTG 59.463 55.000 0.00 0.00 0.00 3.51
3338 3578 0.537188 CAAGGGATAGCACGGACTGT 59.463 55.000 0.00 0.00 0.00 3.55
3351 3591 4.650754 ACGGACTGTGATTATCAGGTAC 57.349 45.455 0.00 0.00 37.25 3.34
3352 3592 3.383825 ACGGACTGTGATTATCAGGTACC 59.616 47.826 2.73 2.73 37.25 3.34
3353 3593 3.243771 CGGACTGTGATTATCAGGTACCC 60.244 52.174 8.74 0.00 37.25 3.69
3354 3594 3.709653 GGACTGTGATTATCAGGTACCCA 59.290 47.826 8.74 0.00 37.25 4.51
3355 3595 4.202264 GGACTGTGATTATCAGGTACCCAG 60.202 50.000 8.74 7.83 37.25 4.45
3356 3596 4.362677 ACTGTGATTATCAGGTACCCAGT 58.637 43.478 8.74 8.50 37.25 4.00
3357 3597 4.783227 ACTGTGATTATCAGGTACCCAGTT 59.217 41.667 8.74 0.00 37.25 3.16
3358 3598 5.250774 ACTGTGATTATCAGGTACCCAGTTT 59.749 40.000 8.74 0.00 37.25 2.66
3359 3599 6.134535 TGTGATTATCAGGTACCCAGTTTT 57.865 37.500 8.74 0.00 0.00 2.43
3360 3600 6.177610 TGTGATTATCAGGTACCCAGTTTTC 58.822 40.000 8.74 0.37 0.00 2.29
3361 3601 6.177610 GTGATTATCAGGTACCCAGTTTTCA 58.822 40.000 8.74 3.19 0.00 2.69
3362 3602 6.828785 GTGATTATCAGGTACCCAGTTTTCAT 59.171 38.462 8.74 0.00 0.00 2.57
3363 3603 7.339466 GTGATTATCAGGTACCCAGTTTTCATT 59.661 37.037 8.74 0.00 0.00 2.57
3364 3604 7.893302 TGATTATCAGGTACCCAGTTTTCATTT 59.107 33.333 8.74 0.00 0.00 2.32
3365 3605 7.696992 TTATCAGGTACCCAGTTTTCATTTC 57.303 36.000 8.74 0.00 0.00 2.17
3366 3606 4.403734 TCAGGTACCCAGTTTTCATTTCC 58.596 43.478 8.74 0.00 0.00 3.13
3367 3607 4.105697 TCAGGTACCCAGTTTTCATTTCCT 59.894 41.667 8.74 0.00 0.00 3.36
3368 3608 4.832823 CAGGTACCCAGTTTTCATTTCCTT 59.167 41.667 8.74 0.00 0.00 3.36
3369 3609 5.304357 CAGGTACCCAGTTTTCATTTCCTTT 59.696 40.000 8.74 0.00 0.00 3.11
3370 3610 6.492087 CAGGTACCCAGTTTTCATTTCCTTTA 59.508 38.462 8.74 0.00 0.00 1.85
3371 3611 6.719829 AGGTACCCAGTTTTCATTTCCTTTAG 59.280 38.462 8.74 0.00 0.00 1.85
3372 3612 6.492429 GGTACCCAGTTTTCATTTCCTTTAGT 59.508 38.462 0.00 0.00 0.00 2.24
3373 3613 6.650427 ACCCAGTTTTCATTTCCTTTAGTC 57.350 37.500 0.00 0.00 0.00 2.59
3374 3614 5.240844 ACCCAGTTTTCATTTCCTTTAGTCG 59.759 40.000 0.00 0.00 0.00 4.18
3375 3615 5.154222 CCAGTTTTCATTTCCTTTAGTCGC 58.846 41.667 0.00 0.00 0.00 5.19
3376 3616 5.154222 CAGTTTTCATTTCCTTTAGTCGCC 58.846 41.667 0.00 0.00 0.00 5.54
3377 3617 4.217767 AGTTTTCATTTCCTTTAGTCGCCC 59.782 41.667 0.00 0.00 0.00 6.13
3378 3618 2.018542 TCATTTCCTTTAGTCGCCCG 57.981 50.000 0.00 0.00 0.00 6.13
3379 3619 0.377203 CATTTCCTTTAGTCGCCCGC 59.623 55.000 0.00 0.00 0.00 6.13
3380 3620 0.746923 ATTTCCTTTAGTCGCCCGCC 60.747 55.000 0.00 0.00 0.00 6.13
3381 3621 3.652539 TTCCTTTAGTCGCCCGCCG 62.653 63.158 0.00 0.00 38.61 6.46
3383 3623 4.814294 CTTTAGTCGCCCGCCGCT 62.814 66.667 0.00 0.00 36.73 5.52
3384 3624 3.420214 CTTTAGTCGCCCGCCGCTA 62.420 63.158 0.00 0.00 36.73 4.26
3385 3625 2.894240 CTTTAGTCGCCCGCCGCTAA 62.894 60.000 0.00 6.54 35.40 3.09
3386 3626 2.504163 TTTAGTCGCCCGCCGCTAAA 62.504 55.000 13.50 13.50 40.13 1.85
3387 3627 2.504163 TTAGTCGCCCGCCGCTAAAA 62.504 55.000 0.00 0.00 34.79 1.52
3388 3628 2.894240 TAGTCGCCCGCCGCTAAAAG 62.894 60.000 0.00 0.00 36.73 2.27
3389 3629 4.382320 TCGCCCGCCGCTAAAAGT 62.382 61.111 0.00 0.00 36.73 2.66
3390 3630 2.509786 CGCCCGCCGCTAAAAGTA 60.510 61.111 0.00 0.00 34.21 2.24
3391 3631 1.885850 CGCCCGCCGCTAAAAGTAT 60.886 57.895 0.00 0.00 34.21 2.12
3392 3632 1.433837 CGCCCGCCGCTAAAAGTATT 61.434 55.000 0.00 0.00 34.21 1.89
3393 3633 0.736636 GCCCGCCGCTAAAAGTATTT 59.263 50.000 0.00 0.00 42.41 1.40
3394 3634 1.941975 GCCCGCCGCTAAAAGTATTTA 59.058 47.619 0.00 0.00 37.28 1.40
3396 3636 2.546789 CCCGCCGCTAAAAGTATTTAGG 59.453 50.000 9.62 0.00 45.37 2.69
3397 3637 3.460103 CCGCCGCTAAAAGTATTTAGGA 58.540 45.455 9.62 0.00 45.37 2.94
3398 3638 3.493503 CCGCCGCTAAAAGTATTTAGGAG 59.506 47.826 9.62 0.00 45.37 3.69
3399 3639 3.493503 CGCCGCTAAAAGTATTTAGGAGG 59.506 47.826 9.62 4.33 45.37 4.30
3400 3640 3.250280 GCCGCTAAAAGTATTTAGGAGGC 59.750 47.826 9.62 8.97 45.37 4.70
3401 3641 4.448210 CCGCTAAAAGTATTTAGGAGGCA 58.552 43.478 9.62 0.00 45.37 4.75
3402 3642 4.879545 CCGCTAAAAGTATTTAGGAGGCAA 59.120 41.667 9.62 0.00 45.37 4.52
3403 3643 5.355910 CCGCTAAAAGTATTTAGGAGGCAAA 59.644 40.000 9.62 0.00 45.37 3.68
3404 3644 6.039382 CCGCTAAAAGTATTTAGGAGGCAAAT 59.961 38.462 9.62 0.00 45.37 2.32
3405 3645 7.416326 CCGCTAAAAGTATTTAGGAGGCAAATT 60.416 37.037 9.62 0.00 45.37 1.82
3406 3646 7.644157 CGCTAAAAGTATTTAGGAGGCAAATTC 59.356 37.037 9.62 0.00 45.37 2.17
3407 3647 8.466798 GCTAAAAGTATTTAGGAGGCAAATTCA 58.533 33.333 9.62 0.00 45.37 2.57
3411 3651 9.875691 AAAGTATTTAGGAGGCAAATTCAATTC 57.124 29.630 0.00 0.00 35.86 2.17
3412 3652 8.011844 AGTATTTAGGAGGCAAATTCAATTCC 57.988 34.615 0.00 0.00 0.00 3.01
3413 3653 6.872585 ATTTAGGAGGCAAATTCAATTCCA 57.127 33.333 0.00 0.00 0.00 3.53
3414 3654 6.678568 TTTAGGAGGCAAATTCAATTCCAA 57.321 33.333 0.00 0.00 0.00 3.53
3415 3655 4.813750 AGGAGGCAAATTCAATTCCAAG 57.186 40.909 0.00 0.00 0.00 3.61
3416 3656 3.516700 AGGAGGCAAATTCAATTCCAAGG 59.483 43.478 0.00 0.00 0.00 3.61
3417 3657 3.264947 GAGGCAAATTCAATTCCAAGGC 58.735 45.455 0.00 0.00 0.00 4.35
3418 3658 2.026915 AGGCAAATTCAATTCCAAGGCC 60.027 45.455 0.00 0.00 39.14 5.19
3419 3659 2.290197 GGCAAATTCAATTCCAAGGCCA 60.290 45.455 5.01 0.00 38.71 5.36
3420 3660 3.410508 GCAAATTCAATTCCAAGGCCAA 58.589 40.909 5.01 0.00 0.00 4.52
3421 3661 4.011698 GCAAATTCAATTCCAAGGCCAAT 58.988 39.130 5.01 0.00 0.00 3.16
3422 3662 4.460034 GCAAATTCAATTCCAAGGCCAATT 59.540 37.500 5.01 0.00 0.00 2.32
3423 3663 5.620429 GCAAATTCAATTCCAAGGCCAATTG 60.620 40.000 16.48 16.48 40.12 2.32
3424 3664 4.914177 ATTCAATTCCAAGGCCAATTGT 57.086 36.364 20.00 5.30 39.84 2.71
3425 3665 6.371595 AATTCAATTCCAAGGCCAATTGTA 57.628 33.333 20.00 14.07 39.84 2.41
3426 3666 4.799564 TCAATTCCAAGGCCAATTGTAC 57.200 40.909 20.00 0.00 39.84 2.90
3427 3667 4.155709 TCAATTCCAAGGCCAATTGTACA 58.844 39.130 20.00 0.00 39.84 2.90
3428 3668 4.590647 TCAATTCCAAGGCCAATTGTACAA 59.409 37.500 20.00 11.41 39.84 2.41
3429 3669 4.806640 ATTCCAAGGCCAATTGTACAAG 57.193 40.909 14.65 1.66 0.00 3.16
3430 3670 1.892474 TCCAAGGCCAATTGTACAAGC 59.108 47.619 14.65 11.68 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
917 925 1.410737 CCATTCGAGCGTACGTGTGG 61.411 60.000 17.90 11.73 34.78 4.17
918 926 0.455464 TCCATTCGAGCGTACGTGTG 60.455 55.000 17.90 6.78 34.70 3.82
919 927 0.454600 ATCCATTCGAGCGTACGTGT 59.545 50.000 17.90 4.38 34.70 4.49
921 929 2.288961 AAATCCATTCGAGCGTACGT 57.711 45.000 17.90 3.43 34.70 3.57
923 931 8.333186 AGTTAATTAAAATCCATTCGAGCGTAC 58.667 33.333 0.00 0.00 0.00 3.67
924 932 8.428186 AGTTAATTAAAATCCATTCGAGCGTA 57.572 30.769 0.00 0.00 0.00 4.42
949 957 9.791801 TGGTGGAGTAGTATACACGTAATAATA 57.208 33.333 5.50 0.00 46.26 0.98
958 966 4.099113 GGAAGGTGGTGGAGTAGTATACAC 59.901 50.000 5.50 1.76 46.26 2.90
959 967 4.284178 GGAAGGTGGTGGAGTAGTATACA 58.716 47.826 5.50 0.00 46.26 2.29
960 968 3.640498 GGGAAGGTGGTGGAGTAGTATAC 59.360 52.174 0.00 0.00 43.47 1.47
961 969 3.374540 GGGGAAGGTGGTGGAGTAGTATA 60.375 52.174 0.00 0.00 0.00 1.47
962 970 2.628829 GGGGAAGGTGGTGGAGTAGTAT 60.629 54.545 0.00 0.00 0.00 2.12
963 971 1.273438 GGGGAAGGTGGTGGAGTAGTA 60.273 57.143 0.00 0.00 0.00 1.82
964 972 0.546988 GGGGAAGGTGGTGGAGTAGT 60.547 60.000 0.00 0.00 0.00 2.73
965 973 1.614241 CGGGGAAGGTGGTGGAGTAG 61.614 65.000 0.00 0.00 0.00 2.57
966 974 1.611261 CGGGGAAGGTGGTGGAGTA 60.611 63.158 0.00 0.00 0.00 2.59
967 975 2.765705 ATCGGGGAAGGTGGTGGAGT 62.766 60.000 0.00 0.00 0.00 3.85
968 976 1.972660 GATCGGGGAAGGTGGTGGAG 61.973 65.000 0.00 0.00 0.00 3.86
969 977 1.993391 GATCGGGGAAGGTGGTGGA 60.993 63.158 0.00 0.00 0.00 4.02
993 1001 4.687215 CGGCCGGCCATCGATCAT 62.687 66.667 42.78 0.00 42.43 2.45
1008 1016 1.805945 GTTCCTCGCTGCTACACGG 60.806 63.158 0.00 0.00 0.00 4.94
1023 1039 4.387862 ACACCGTCATGTTCTAATTCGTTC 59.612 41.667 0.00 0.00 0.00 3.95
1025 1041 3.921677 ACACCGTCATGTTCTAATTCGT 58.078 40.909 0.00 0.00 0.00 3.85
1026 1042 3.001070 CGACACCGTCATGTTCTAATTCG 60.001 47.826 0.00 0.00 31.24 3.34
1033 1049 0.949105 AAGGCGACACCGTCATGTTC 60.949 55.000 0.00 0.00 44.02 3.18
1035 1051 1.374252 GAAGGCGACACCGTCATGT 60.374 57.895 0.00 0.00 45.49 3.21
1051 1067 1.659335 GTGGCTCAACGACGTCGAA 60.659 57.895 41.52 24.64 43.02 3.71
1691 1713 3.805267 CGCCAAGATGGAGCTCAC 58.195 61.111 17.19 5.63 40.96 3.51
1927 1952 2.125269 GACGTGGCCGCCTACAAT 60.125 61.111 11.56 0.00 37.70 2.71
1993 2018 1.078426 CGTGTCCATGTTCTCCCCC 60.078 63.158 0.00 0.00 0.00 5.40
2203 2228 2.050934 GTACCGCTTCCTCCTCCGT 61.051 63.158 0.00 0.00 0.00 4.69
2239 2264 2.125552 CTGATCGAGCGCAACCCA 60.126 61.111 11.47 0.00 0.00 4.51
2441 2477 2.158755 CCCGGGAGATCAGCAAGTTAAT 60.159 50.000 18.48 0.00 0.00 1.40
2443 2479 0.830648 CCCGGGAGATCAGCAAGTTA 59.169 55.000 18.48 0.00 0.00 2.24
2445 2481 3.036429 GCCCGGGAGATCAGCAAGT 62.036 63.158 29.31 0.00 0.00 3.16
2455 2491 2.672996 CCACTTGTTGCCCGGGAG 60.673 66.667 29.31 15.50 0.00 4.30
2456 2492 4.278513 CCCACTTGTTGCCCGGGA 62.279 66.667 29.31 6.60 39.44 5.14
2459 2495 3.673484 CTGCCCACTTGTTGCCCG 61.673 66.667 0.00 0.00 0.00 6.13
2460 2496 1.228429 TACTGCCCACTTGTTGCCC 60.228 57.895 0.00 0.00 0.00 5.36
2461 2497 0.250727 TCTACTGCCCACTTGTTGCC 60.251 55.000 0.00 0.00 0.00 4.52
2462 2498 1.160137 CTCTACTGCCCACTTGTTGC 58.840 55.000 0.00 0.00 0.00 4.17
2463 2499 2.613977 CCTCTCTACTGCCCACTTGTTG 60.614 54.545 0.00 0.00 0.00 3.33
2464 2500 1.625818 CCTCTCTACTGCCCACTTGTT 59.374 52.381 0.00 0.00 0.00 2.83
2465 2501 1.270907 CCTCTCTACTGCCCACTTGT 58.729 55.000 0.00 0.00 0.00 3.16
2466 2502 1.270907 ACCTCTCTACTGCCCACTTG 58.729 55.000 0.00 0.00 0.00 3.16
2469 2505 1.342175 ACCTACCTCTCTACTGCCCAC 60.342 57.143 0.00 0.00 0.00 4.61
2473 2509 1.135333 GTGCACCTACCTCTCTACTGC 59.865 57.143 5.22 0.00 0.00 4.40
2504 2540 3.124636 CCGACACAAACATACAACTAGCC 59.875 47.826 0.00 0.00 0.00 3.93
2510 2546 4.074627 TCTTCCCGACACAAACATACAA 57.925 40.909 0.00 0.00 0.00 2.41
2515 2551 2.992124 TCTTCTTCCCGACACAAACA 57.008 45.000 0.00 0.00 0.00 2.83
2534 2572 4.137543 CACTTGAGAGCTACAAAACCCTT 58.862 43.478 7.14 0.00 0.00 3.95
2551 2589 1.572085 CTTCCTCGCCACTGCACTTG 61.572 60.000 0.00 0.00 37.32 3.16
2591 2632 4.459089 GAGACTGGACTGCCCCGC 62.459 72.222 0.00 0.00 0.00 6.13
2593 2634 0.324830 ACTAGAGACTGGACTGCCCC 60.325 60.000 0.00 0.00 0.00 5.80
2595 2636 1.203523 CACACTAGAGACTGGACTGCC 59.796 57.143 0.00 0.00 0.00 4.85
2596 2637 1.203523 CCACACTAGAGACTGGACTGC 59.796 57.143 0.00 0.00 0.00 4.40
2609 2650 5.650703 GGCCTTTAATTTAGCTTCCACACTA 59.349 40.000 0.00 0.00 0.00 2.74
2627 2668 4.697756 TGCGTGCGCTAGGCCTTT 62.698 61.111 12.58 0.00 42.61 3.11
2640 2681 3.673484 GCCAACATGCAGGTGCGT 61.673 61.111 4.03 0.00 45.83 5.24
2656 2697 2.458006 CTTCCCGCGTTCCACTTTGC 62.458 60.000 4.92 0.00 0.00 3.68
2660 2701 2.047213 TTTCCTTCCCGCGTTCCACT 62.047 55.000 4.92 0.00 0.00 4.00
2668 2709 0.888619 CCTTTCCTTTTCCTTCCCGC 59.111 55.000 0.00 0.00 0.00 6.13
2669 2710 1.886542 CACCTTTCCTTTTCCTTCCCG 59.113 52.381 0.00 0.00 0.00 5.14
2673 2714 2.470057 TGCCACCTTTCCTTTTCCTT 57.530 45.000 0.00 0.00 0.00 3.36
2692 2733 5.886960 AGAGAAGTAAATGATTTGCGCTT 57.113 34.783 9.73 2.77 0.00 4.68
2720 2761 6.570692 ACTGAGACTTAACGAGACAGAAAAA 58.429 36.000 0.00 0.00 33.06 1.94
2721 2762 6.145338 ACTGAGACTTAACGAGACAGAAAA 57.855 37.500 0.00 0.00 33.06 2.29
2722 2763 5.560375 CGACTGAGACTTAACGAGACAGAAA 60.560 44.000 0.00 0.00 33.06 2.52
2723 2764 4.083961 CGACTGAGACTTAACGAGACAGAA 60.084 45.833 0.00 0.00 33.06 3.02
2724 2765 3.432592 CGACTGAGACTTAACGAGACAGA 59.567 47.826 0.00 0.00 33.06 3.41
2725 2766 3.432592 TCGACTGAGACTTAACGAGACAG 59.567 47.826 0.00 0.00 34.03 3.51
2726 2767 3.186001 GTCGACTGAGACTTAACGAGACA 59.814 47.826 8.70 0.00 38.09 3.41
2727 2768 3.735121 GTCGACTGAGACTTAACGAGAC 58.265 50.000 8.70 0.00 38.09 3.36
2737 2778 1.642728 TAGAGCGAGTCGACTGAGAC 58.357 55.000 25.58 11.66 41.23 3.36
2738 2779 2.101750 AGATAGAGCGAGTCGACTGAGA 59.898 50.000 25.58 2.12 0.00 3.27
2739 2780 2.220824 CAGATAGAGCGAGTCGACTGAG 59.779 54.545 25.58 17.51 31.10 3.35
2740 2781 2.205911 CAGATAGAGCGAGTCGACTGA 58.794 52.381 25.58 0.97 31.10 3.41
2741 2782 1.937223 ACAGATAGAGCGAGTCGACTG 59.063 52.381 25.58 16.03 33.68 3.51
2742 2783 1.937223 CACAGATAGAGCGAGTCGACT 59.063 52.381 20.18 20.18 0.00 4.18
2743 2784 1.934525 TCACAGATAGAGCGAGTCGAC 59.065 52.381 18.61 7.70 0.00 4.20
2744 2785 2.159085 TCTCACAGATAGAGCGAGTCGA 60.159 50.000 18.61 0.00 33.15 4.20
2745 2786 2.205911 TCTCACAGATAGAGCGAGTCG 58.794 52.381 8.54 8.54 33.15 4.18
2746 2787 4.065088 AGATCTCACAGATAGAGCGAGTC 58.935 47.826 0.00 0.00 34.53 3.36
2747 2788 4.085357 AGATCTCACAGATAGAGCGAGT 57.915 45.455 0.00 0.00 34.53 4.18
2748 2789 5.468409 TGTAAGATCTCACAGATAGAGCGAG 59.532 44.000 0.00 0.00 34.53 5.03
2749 2790 5.368989 TGTAAGATCTCACAGATAGAGCGA 58.631 41.667 0.00 0.00 34.53 4.93
2750 2791 5.681337 TGTAAGATCTCACAGATAGAGCG 57.319 43.478 0.00 0.00 34.53 5.03
2751 2792 7.213216 TCATGTAAGATCTCACAGATAGAGC 57.787 40.000 4.70 0.00 34.53 4.09
2755 2796 9.770097 GGATTTTCATGTAAGATCTCACAGATA 57.230 33.333 4.70 0.00 34.53 1.98
2756 2797 8.270030 TGGATTTTCATGTAAGATCTCACAGAT 58.730 33.333 4.70 0.00 37.73 2.90
2757 2798 7.623630 TGGATTTTCATGTAAGATCTCACAGA 58.376 34.615 4.70 0.00 31.03 3.41
2758 2799 7.854557 TGGATTTTCATGTAAGATCTCACAG 57.145 36.000 4.70 0.00 31.03 3.66
2759 2800 8.217131 CATGGATTTTCATGTAAGATCTCACA 57.783 34.615 0.00 0.00 39.56 3.58
2819 2860 1.520174 CGATCGAGTGACATGACATGC 59.480 52.381 15.49 8.84 0.00 4.06
2820 2861 3.041492 CTCGATCGAGTGACATGACATG 58.959 50.000 32.23 14.02 37.47 3.21
2822 2863 2.096013 GTCTCGATCGAGTGACATGACA 59.904 50.000 36.68 17.27 42.49 3.58
2823 2864 2.353269 AGTCTCGATCGAGTGACATGAC 59.647 50.000 36.68 27.10 42.49 3.06
2824 2865 2.633488 AGTCTCGATCGAGTGACATGA 58.367 47.619 36.68 18.81 42.49 3.07
2825 2866 3.104470 CAAGTCTCGATCGAGTGACATG 58.896 50.000 36.68 28.03 42.49 3.21
2826 2867 2.098280 CCAAGTCTCGATCGAGTGACAT 59.902 50.000 36.68 22.76 42.49 3.06
2827 2868 1.468914 CCAAGTCTCGATCGAGTGACA 59.531 52.381 36.68 20.34 42.49 3.58
2828 2869 1.469308 ACCAAGTCTCGATCGAGTGAC 59.531 52.381 36.68 29.55 42.49 3.67
2829 2870 1.822506 ACCAAGTCTCGATCGAGTGA 58.177 50.000 36.68 21.54 42.49 3.41
2832 2873 5.583495 AGATTTAACCAAGTCTCGATCGAG 58.417 41.667 34.20 34.20 43.21 4.04
2833 2874 5.578005 AGATTTAACCAAGTCTCGATCGA 57.422 39.130 18.32 18.32 0.00 3.59
2834 2875 5.005779 CCAAGATTTAACCAAGTCTCGATCG 59.994 44.000 9.36 9.36 30.05 3.69
2835 2876 5.875359 ACCAAGATTTAACCAAGTCTCGATC 59.125 40.000 0.00 0.00 30.05 3.69
2836 2877 5.805728 ACCAAGATTTAACCAAGTCTCGAT 58.194 37.500 0.00 0.00 30.05 3.59
2837 2878 5.221561 TGACCAAGATTTAACCAAGTCTCGA 60.222 40.000 0.00 0.00 30.05 4.04
2838 2879 4.994852 TGACCAAGATTTAACCAAGTCTCG 59.005 41.667 0.00 0.00 30.05 4.04
2839 2880 6.877611 TTGACCAAGATTTAACCAAGTCTC 57.122 37.500 0.00 0.00 30.05 3.36
2841 2882 7.657336 TCATTTGACCAAGATTTAACCAAGTC 58.343 34.615 0.00 0.00 0.00 3.01
2843 2884 7.661040 ACTCATTTGACCAAGATTTAACCAAG 58.339 34.615 0.00 0.00 0.00 3.61
2844 2885 7.255801 GGACTCATTTGACCAAGATTTAACCAA 60.256 37.037 0.00 0.00 0.00 3.67
2845 2886 6.208599 GGACTCATTTGACCAAGATTTAACCA 59.791 38.462 0.00 0.00 0.00 3.67
2846 2887 6.434340 AGGACTCATTTGACCAAGATTTAACC 59.566 38.462 0.00 0.00 0.00 2.85
2847 2888 7.454260 AGGACTCATTTGACCAAGATTTAAC 57.546 36.000 0.00 0.00 0.00 2.01
2849 2890 7.336931 GCTTAGGACTCATTTGACCAAGATTTA 59.663 37.037 0.00 0.00 0.00 1.40
2851 2892 5.649831 GCTTAGGACTCATTTGACCAAGATT 59.350 40.000 0.00 0.00 0.00 2.40
2852 2893 5.189180 GCTTAGGACTCATTTGACCAAGAT 58.811 41.667 0.00 0.00 0.00 2.40
2853 2894 4.041567 TGCTTAGGACTCATTTGACCAAGA 59.958 41.667 0.00 0.00 0.00 3.02
2854 2895 4.154918 GTGCTTAGGACTCATTTGACCAAG 59.845 45.833 0.00 0.00 0.00 3.61
2855 2896 4.072131 GTGCTTAGGACTCATTTGACCAA 58.928 43.478 0.00 0.00 0.00 3.67
2856 2897 3.674997 GTGCTTAGGACTCATTTGACCA 58.325 45.455 0.00 0.00 0.00 4.02
2858 2899 2.094417 GCGTGCTTAGGACTCATTTGAC 59.906 50.000 1.88 0.00 0.00 3.18
2859 2900 2.346803 GCGTGCTTAGGACTCATTTGA 58.653 47.619 1.88 0.00 0.00 2.69
2864 2905 0.323999 TAGGGCGTGCTTAGGACTCA 60.324 55.000 1.88 0.00 0.00 3.41
2865 2906 0.102663 GTAGGGCGTGCTTAGGACTC 59.897 60.000 1.88 0.00 0.00 3.36
2867 2908 0.464452 ATGTAGGGCGTGCTTAGGAC 59.536 55.000 0.00 0.00 0.00 3.85
2868 2909 1.200519 AATGTAGGGCGTGCTTAGGA 58.799 50.000 0.00 0.00 0.00 2.94
2869 2910 2.038387 AAATGTAGGGCGTGCTTAGG 57.962 50.000 0.00 0.00 0.00 2.69
2887 2928 7.309770 AGTAATAATGGTTTCCAGCCAAAAA 57.690 32.000 0.00 0.00 39.72 1.94
2888 2929 6.926630 AGTAATAATGGTTTCCAGCCAAAA 57.073 33.333 0.00 0.00 39.72 2.44
2889 2930 8.602472 AATAGTAATAATGGTTTCCAGCCAAA 57.398 30.769 0.00 0.00 39.72 3.28
2891 2932 9.875708 ATAAATAGTAATAATGGTTTCCAGCCA 57.124 29.630 0.00 0.00 36.75 4.75
2895 2936 9.084533 GCCCATAAATAGTAATAATGGTTTCCA 57.915 33.333 0.00 0.00 36.21 3.53
2896 2937 9.309224 AGCCCATAAATAGTAATAATGGTTTCC 57.691 33.333 0.00 0.00 36.21 3.13
2898 2939 9.654919 ACAGCCCATAAATAGTAATAATGGTTT 57.345 29.630 0.00 0.00 36.21 3.27
2900 2941 9.959721 CTACAGCCCATAAATAGTAATAATGGT 57.040 33.333 0.00 0.00 36.21 3.55
2901 2942 8.893727 GCTACAGCCCATAAATAGTAATAATGG 58.106 37.037 0.00 0.00 37.44 3.16
2921 3161 2.620251 TCCGGAAATCATGGCTACAG 57.380 50.000 0.00 0.00 0.00 2.74
2925 3165 2.442236 AACATCCGGAAATCATGGCT 57.558 45.000 9.01 0.00 0.00 4.75
2926 3166 3.189285 CAAAACATCCGGAAATCATGGC 58.811 45.455 9.01 0.00 0.00 4.40
2927 3167 3.784338 CCAAAACATCCGGAAATCATGG 58.216 45.455 9.01 11.43 0.00 3.66
2928 3168 3.189285 GCCAAAACATCCGGAAATCATG 58.811 45.455 9.01 3.89 0.00 3.07
2929 3169 2.168313 GGCCAAAACATCCGGAAATCAT 59.832 45.455 9.01 0.00 0.00 2.45
2930 3170 1.548269 GGCCAAAACATCCGGAAATCA 59.452 47.619 9.01 0.00 0.00 2.57
2931 3171 1.824852 AGGCCAAAACATCCGGAAATC 59.175 47.619 9.01 0.00 0.00 2.17
2932 3172 1.937191 AGGCCAAAACATCCGGAAAT 58.063 45.000 9.01 0.00 0.00 2.17
2933 3173 2.588464 TAGGCCAAAACATCCGGAAA 57.412 45.000 9.01 0.00 0.00 3.13
2935 3175 2.105821 CCTATAGGCCAAAACATCCGGA 59.894 50.000 6.61 6.61 0.00 5.14
2938 3178 6.731292 AAATTCCTATAGGCCAAAACATCC 57.269 37.500 14.50 0.00 34.44 3.51
2941 3181 9.362151 CCTATAAAATTCCTATAGGCCAAAACA 57.638 33.333 14.50 0.00 40.78 2.83
2942 3182 9.582648 TCCTATAAAATTCCTATAGGCCAAAAC 57.417 33.333 14.50 0.00 44.35 2.43
2987 3227 6.976934 ACAAATCAAAGGGCTCTAGAAAAA 57.023 33.333 0.00 0.00 0.00 1.94
2988 3228 6.659242 CCTACAAATCAAAGGGCTCTAGAAAA 59.341 38.462 0.00 0.00 0.00 2.29
2989 3229 6.012858 TCCTACAAATCAAAGGGCTCTAGAAA 60.013 38.462 0.00 0.00 0.00 2.52
2990 3230 5.487488 TCCTACAAATCAAAGGGCTCTAGAA 59.513 40.000 0.00 0.00 0.00 2.10
2991 3231 5.030147 TCCTACAAATCAAAGGGCTCTAGA 58.970 41.667 0.00 0.00 0.00 2.43
2992 3232 5.359194 TCCTACAAATCAAAGGGCTCTAG 57.641 43.478 0.00 0.00 0.00 2.43
2993 3233 5.772393 TTCCTACAAATCAAAGGGCTCTA 57.228 39.130 0.00 0.00 0.00 2.43
2994 3234 4.657814 TTCCTACAAATCAAAGGGCTCT 57.342 40.909 0.00 0.00 0.00 4.09
2995 3235 5.921962 ATTTCCTACAAATCAAAGGGCTC 57.078 39.130 0.00 0.00 0.00 4.70
2996 3236 5.779771 TCAATTTCCTACAAATCAAAGGGCT 59.220 36.000 0.00 0.00 0.00 5.19
2997 3237 6.036577 TCAATTTCCTACAAATCAAAGGGC 57.963 37.500 0.00 0.00 0.00 5.19
2998 3238 9.154847 GAAATCAATTTCCTACAAATCAAAGGG 57.845 33.333 4.44 0.00 40.10 3.95
2999 3239 9.933723 AGAAATCAATTTCCTACAAATCAAAGG 57.066 29.630 10.99 0.00 45.52 3.11
3069 3309 4.015872 TCGAGTCTGGGCTAACATTTTT 57.984 40.909 0.00 0.00 0.00 1.94
3070 3310 3.695830 TCGAGTCTGGGCTAACATTTT 57.304 42.857 0.00 0.00 0.00 1.82
3071 3311 3.914426 ATCGAGTCTGGGCTAACATTT 57.086 42.857 0.00 0.00 0.00 2.32
3072 3312 4.215908 TCTATCGAGTCTGGGCTAACATT 58.784 43.478 0.00 0.00 0.00 2.71
3073 3313 3.833732 TCTATCGAGTCTGGGCTAACAT 58.166 45.455 0.00 0.00 0.00 2.71
3074 3314 3.292492 TCTATCGAGTCTGGGCTAACA 57.708 47.619 0.00 0.00 0.00 2.41
3075 3315 4.650754 TTTCTATCGAGTCTGGGCTAAC 57.349 45.455 0.00 0.00 0.00 2.34
3076 3316 5.871396 ATTTTCTATCGAGTCTGGGCTAA 57.129 39.130 0.00 0.00 0.00 3.09
3077 3317 5.871396 AATTTTCTATCGAGTCTGGGCTA 57.129 39.130 0.00 0.00 0.00 3.93
3078 3318 4.762289 AATTTTCTATCGAGTCTGGGCT 57.238 40.909 0.00 0.00 0.00 5.19
3079 3319 5.502544 CGAAAATTTTCTATCGAGTCTGGGC 60.503 44.000 24.53 0.00 37.48 5.36
3080 3320 5.581085 ACGAAAATTTTCTATCGAGTCTGGG 59.419 40.000 24.53 9.78 38.59 4.45
3081 3321 6.531948 AGACGAAAATTTTCTATCGAGTCTGG 59.468 38.462 24.08 11.73 38.59 3.86
3082 3322 7.513190 AGACGAAAATTTTCTATCGAGTCTG 57.487 36.000 24.08 12.10 38.59 3.51
3083 3323 9.239002 CATAGACGAAAATTTTCTATCGAGTCT 57.761 33.333 26.06 26.06 38.59 3.24
3084 3324 7.999322 GCATAGACGAAAATTTTCTATCGAGTC 59.001 37.037 24.53 21.30 38.59 3.36
3085 3325 7.491372 TGCATAGACGAAAATTTTCTATCGAGT 59.509 33.333 24.53 15.48 38.59 4.18
3086 3326 7.841486 TGCATAGACGAAAATTTTCTATCGAG 58.159 34.615 24.53 17.01 38.59 4.04
3087 3327 7.764695 TGCATAGACGAAAATTTTCTATCGA 57.235 32.000 24.53 18.37 38.59 3.59
3088 3328 9.517361 GTATGCATAGACGAAAATTTTCTATCG 57.483 33.333 24.53 16.55 40.90 2.92
3089 3329 9.813080 GGTATGCATAGACGAAAATTTTCTATC 57.187 33.333 24.53 20.86 31.46 2.08
3090 3330 8.495949 CGGTATGCATAGACGAAAATTTTCTAT 58.504 33.333 24.53 14.83 33.64 1.98
3091 3331 7.493320 ACGGTATGCATAGACGAAAATTTTCTA 59.507 33.333 27.71 13.37 35.07 2.10
3092 3332 6.315393 ACGGTATGCATAGACGAAAATTTTCT 59.685 34.615 27.71 13.93 35.07 2.52
3093 3333 6.483687 ACGGTATGCATAGACGAAAATTTTC 58.516 36.000 27.71 19.08 0.00 2.29
3094 3334 6.431198 ACGGTATGCATAGACGAAAATTTT 57.569 33.333 27.71 2.28 0.00 1.82
3095 3335 5.007332 GGACGGTATGCATAGACGAAAATTT 59.993 40.000 27.71 11.49 0.00 1.82
3096 3336 4.510340 GGACGGTATGCATAGACGAAAATT 59.490 41.667 27.71 12.04 0.00 1.82
3097 3337 4.056050 GGACGGTATGCATAGACGAAAAT 58.944 43.478 27.71 12.33 0.00 1.82
3098 3338 3.450578 GGACGGTATGCATAGACGAAAA 58.549 45.455 27.71 0.00 0.00 2.29
3099 3339 2.223876 GGGACGGTATGCATAGACGAAA 60.224 50.000 27.71 0.00 0.00 3.46
3100 3340 1.338973 GGGACGGTATGCATAGACGAA 59.661 52.381 27.71 0.00 0.00 3.85
3101 3341 0.956633 GGGACGGTATGCATAGACGA 59.043 55.000 27.71 0.06 0.00 4.20
3102 3342 0.959553 AGGGACGGTATGCATAGACG 59.040 55.000 22.26 22.26 0.00 4.18
3103 3343 5.191426 TCTATAGGGACGGTATGCATAGAC 58.809 45.833 6.67 0.00 0.00 2.59
3104 3344 5.446260 TCTATAGGGACGGTATGCATAGA 57.554 43.478 6.67 0.00 0.00 1.98
3105 3345 6.525578 TTTCTATAGGGACGGTATGCATAG 57.474 41.667 6.67 0.00 0.00 2.23
3106 3346 8.638873 CATATTTCTATAGGGACGGTATGCATA 58.361 37.037 1.16 1.16 0.00 3.14
3107 3347 7.125811 ACATATTTCTATAGGGACGGTATGCAT 59.874 37.037 3.79 3.79 0.00 3.96
3108 3348 6.439375 ACATATTTCTATAGGGACGGTATGCA 59.561 38.462 0.00 0.00 0.00 3.96
3109 3349 6.875076 ACATATTTCTATAGGGACGGTATGC 58.125 40.000 0.00 0.00 0.00 3.14
3110 3350 8.063200 TGACATATTTCTATAGGGACGGTATG 57.937 38.462 0.00 4.11 0.00 2.39
3111 3351 8.840200 ATGACATATTTCTATAGGGACGGTAT 57.160 34.615 0.00 0.00 0.00 2.73
3112 3352 7.891712 TGATGACATATTTCTATAGGGACGGTA 59.108 37.037 0.00 0.00 0.00 4.02
3113 3353 6.724441 TGATGACATATTTCTATAGGGACGGT 59.276 38.462 0.00 0.00 0.00 4.83
3114 3354 7.122799 TCTGATGACATATTTCTATAGGGACGG 59.877 40.741 0.00 0.00 0.00 4.79
3115 3355 7.971168 GTCTGATGACATATTTCTATAGGGACG 59.029 40.741 0.00 0.00 42.48 4.79
3116 3356 9.030452 AGTCTGATGACATATTTCTATAGGGAC 57.970 37.037 0.00 0.00 45.20 4.46
3117 3357 9.607333 AAGTCTGATGACATATTTCTATAGGGA 57.393 33.333 0.00 0.00 45.20 4.20
3125 3365 9.055248 CGTTTGAAAAGTCTGATGACATATTTC 57.945 33.333 0.00 0.00 45.20 2.17
3126 3366 8.783093 TCGTTTGAAAAGTCTGATGACATATTT 58.217 29.630 0.00 0.00 45.20 1.40
3127 3367 8.322906 TCGTTTGAAAAGTCTGATGACATATT 57.677 30.769 0.00 0.00 45.20 1.28
3128 3368 7.065085 CCTCGTTTGAAAAGTCTGATGACATAT 59.935 37.037 0.00 0.00 45.20 1.78
3129 3369 6.368791 CCTCGTTTGAAAAGTCTGATGACATA 59.631 38.462 0.00 0.00 45.20 2.29
3130 3370 5.180117 CCTCGTTTGAAAAGTCTGATGACAT 59.820 40.000 0.00 0.00 45.20 3.06
3131 3371 4.511454 CCTCGTTTGAAAAGTCTGATGACA 59.489 41.667 0.00 0.00 45.20 3.58
3132 3372 4.611581 GCCTCGTTTGAAAAGTCTGATGAC 60.612 45.833 0.00 0.00 43.22 3.06
3133 3373 3.498397 GCCTCGTTTGAAAAGTCTGATGA 59.502 43.478 0.00 0.00 0.00 2.92
3134 3374 3.365364 GGCCTCGTTTGAAAAGTCTGATG 60.365 47.826 0.00 0.00 0.00 3.07
3135 3375 2.814336 GGCCTCGTTTGAAAAGTCTGAT 59.186 45.455 0.00 0.00 0.00 2.90
3136 3376 2.158813 AGGCCTCGTTTGAAAAGTCTGA 60.159 45.455 0.00 0.00 0.00 3.27
3137 3377 2.222027 AGGCCTCGTTTGAAAAGTCTG 58.778 47.619 0.00 0.00 0.00 3.51
3138 3378 2.640316 AGGCCTCGTTTGAAAAGTCT 57.360 45.000 0.00 0.00 0.00 3.24
3139 3379 3.372060 CAAAGGCCTCGTTTGAAAAGTC 58.628 45.455 5.23 0.00 40.31 3.01
3140 3380 2.100749 CCAAAGGCCTCGTTTGAAAAGT 59.899 45.455 15.88 0.00 40.31 2.66
3141 3381 2.100749 ACCAAAGGCCTCGTTTGAAAAG 59.899 45.455 15.88 3.31 40.31 2.27
3142 3382 2.100087 GACCAAAGGCCTCGTTTGAAAA 59.900 45.455 15.88 0.00 40.31 2.29
3143 3383 1.679153 GACCAAAGGCCTCGTTTGAAA 59.321 47.619 15.88 0.00 40.31 2.69
3144 3384 1.133915 AGACCAAAGGCCTCGTTTGAA 60.134 47.619 15.88 0.00 40.31 2.69
3145 3385 0.472471 AGACCAAAGGCCTCGTTTGA 59.528 50.000 15.88 0.00 40.31 2.69
3146 3386 1.318576 AAGACCAAAGGCCTCGTTTG 58.681 50.000 5.23 7.29 38.46 2.93
3147 3387 1.681264 CAAAGACCAAAGGCCTCGTTT 59.319 47.619 5.23 0.00 0.00 3.60
3148 3388 1.318576 CAAAGACCAAAGGCCTCGTT 58.681 50.000 5.23 0.00 0.00 3.85
3149 3389 0.537371 CCAAAGACCAAAGGCCTCGT 60.537 55.000 5.23 1.96 0.00 4.18
3150 3390 0.250727 TCCAAAGACCAAAGGCCTCG 60.251 55.000 5.23 0.00 0.00 4.63
3151 3391 1.073923 TCTCCAAAGACCAAAGGCCTC 59.926 52.381 5.23 0.00 0.00 4.70
3152 3392 1.074566 CTCTCCAAAGACCAAAGGCCT 59.925 52.381 0.00 0.00 0.00 5.19
3153 3393 1.073923 TCTCTCCAAAGACCAAAGGCC 59.926 52.381 0.00 0.00 0.00 5.19
3154 3394 2.155279 GTCTCTCCAAAGACCAAAGGC 58.845 52.381 0.00 0.00 39.85 4.35
3155 3395 2.224305 ACGTCTCTCCAAAGACCAAAGG 60.224 50.000 0.00 0.00 42.23 3.11
3156 3396 3.113260 ACGTCTCTCCAAAGACCAAAG 57.887 47.619 0.00 0.00 42.23 2.77
3157 3397 3.134081 AGAACGTCTCTCCAAAGACCAAA 59.866 43.478 0.00 0.00 42.23 3.28
3158 3398 2.698797 AGAACGTCTCTCCAAAGACCAA 59.301 45.455 0.00 0.00 42.23 3.67
3159 3399 2.296471 GAGAACGTCTCTCCAAAGACCA 59.704 50.000 13.53 0.00 44.39 4.02
3160 3400 2.949142 GAGAACGTCTCTCCAAAGACC 58.051 52.381 13.53 0.00 44.39 3.85
3169 3409 5.707242 TTGTATCACTTGAGAACGTCTCT 57.293 39.130 13.65 7.91 43.73 3.10
3170 3410 9.171701 GTATATTGTATCACTTGAGAACGTCTC 57.828 37.037 7.74 7.74 43.65 3.36
3171 3411 8.683615 TGTATATTGTATCACTTGAGAACGTCT 58.316 33.333 0.00 0.00 0.00 4.18
3172 3412 8.851960 TGTATATTGTATCACTTGAGAACGTC 57.148 34.615 0.00 0.00 0.00 4.34
3173 3413 9.817809 ATTGTATATTGTATCACTTGAGAACGT 57.182 29.630 0.00 0.00 0.00 3.99
3178 3418 9.155975 GGCCTATTGTATATTGTATCACTTGAG 57.844 37.037 0.00 0.00 0.00 3.02
3179 3419 8.880244 AGGCCTATTGTATATTGTATCACTTGA 58.120 33.333 1.29 0.00 0.00 3.02
3187 3427 9.824216 AGTCTCTTAGGCCTATTGTATATTGTA 57.176 33.333 14.74 0.00 0.00 2.41
3190 3430 7.956315 TGGAGTCTCTTAGGCCTATTGTATATT 59.044 37.037 14.74 0.00 0.00 1.28
3191 3431 7.479579 TGGAGTCTCTTAGGCCTATTGTATAT 58.520 38.462 14.74 0.00 0.00 0.86
3192 3432 6.860034 TGGAGTCTCTTAGGCCTATTGTATA 58.140 40.000 14.74 0.00 0.00 1.47
3193 3433 5.716979 TGGAGTCTCTTAGGCCTATTGTAT 58.283 41.667 14.74 0.00 0.00 2.29
3194 3434 5.138758 TGGAGTCTCTTAGGCCTATTGTA 57.861 43.478 14.74 0.00 0.00 2.41
3196 3436 3.244044 GCTGGAGTCTCTTAGGCCTATTG 60.244 52.174 14.74 10.06 0.00 1.90
3197 3437 2.969262 GCTGGAGTCTCTTAGGCCTATT 59.031 50.000 14.74 0.00 0.00 1.73
3198 3438 2.091055 TGCTGGAGTCTCTTAGGCCTAT 60.091 50.000 14.74 0.00 0.00 2.57
3199 3439 1.288037 TGCTGGAGTCTCTTAGGCCTA 59.712 52.381 8.91 8.91 0.00 3.93
3201 3441 0.463620 CTGCTGGAGTCTCTTAGGCC 59.536 60.000 0.00 0.00 0.00 5.19
3202 3442 1.408702 CTCTGCTGGAGTCTCTTAGGC 59.591 57.143 0.00 0.66 37.30 3.93
3203 3443 1.408702 GCTCTGCTGGAGTCTCTTAGG 59.591 57.143 0.00 0.00 43.62 2.69
3204 3444 1.065401 CGCTCTGCTGGAGTCTCTTAG 59.935 57.143 0.00 0.45 43.62 2.18
3205 3445 1.098869 CGCTCTGCTGGAGTCTCTTA 58.901 55.000 0.00 0.00 43.62 2.10
3209 3449 1.181741 TCAACGCTCTGCTGGAGTCT 61.182 55.000 8.56 0.00 43.62 3.24
3210 3450 1.011451 GTCAACGCTCTGCTGGAGTC 61.011 60.000 8.56 0.00 43.62 3.36
3211 3451 1.005630 GTCAACGCTCTGCTGGAGT 60.006 57.895 8.56 0.00 43.62 3.85
3212 3452 1.739562 GGTCAACGCTCTGCTGGAG 60.740 63.158 3.48 3.48 44.49 3.86
3213 3453 2.038814 TTGGTCAACGCTCTGCTGGA 62.039 55.000 0.00 0.00 0.00 3.86
3214 3454 0.957395 ATTGGTCAACGCTCTGCTGG 60.957 55.000 0.00 0.00 0.00 4.85
3215 3455 1.662629 CTATTGGTCAACGCTCTGCTG 59.337 52.381 0.00 0.00 0.00 4.41
3216 3456 1.406069 CCTATTGGTCAACGCTCTGCT 60.406 52.381 0.00 0.00 0.00 4.24
3217 3457 1.009829 CCTATTGGTCAACGCTCTGC 58.990 55.000 0.00 0.00 0.00 4.26
3218 3458 1.009829 GCCTATTGGTCAACGCTCTG 58.990 55.000 0.00 0.00 35.27 3.35
3219 3459 0.107654 GGCCTATTGGTCAACGCTCT 60.108 55.000 0.00 0.00 38.01 4.09
3220 3460 0.392461 TGGCCTATTGGTCAACGCTC 60.392 55.000 3.32 0.00 46.26 5.03
3222 3462 4.312052 TGGCCTATTGGTCAACGC 57.688 55.556 3.32 0.00 46.26 4.84
3235 3475 2.024414 AGATGATAAAACGGCTTGGCC 58.976 47.619 0.00 0.00 46.75 5.36
3236 3476 4.893424 TTAGATGATAAAACGGCTTGGC 57.107 40.909 0.00 0.00 0.00 4.52
3257 3497 5.227908 CAATGTCTGAAGCTGCTCATTTTT 58.772 37.500 1.00 0.00 0.00 1.94
3258 3498 4.321750 CCAATGTCTGAAGCTGCTCATTTT 60.322 41.667 1.00 0.00 0.00 1.82
3259 3499 3.192844 CCAATGTCTGAAGCTGCTCATTT 59.807 43.478 1.00 0.00 0.00 2.32
3260 3500 2.753452 CCAATGTCTGAAGCTGCTCATT 59.247 45.455 1.00 5.14 0.00 2.57
3261 3501 2.366533 CCAATGTCTGAAGCTGCTCAT 58.633 47.619 1.00 0.00 0.00 2.90
3262 3502 1.817357 CCAATGTCTGAAGCTGCTCA 58.183 50.000 1.00 2.06 0.00 4.26
3263 3503 0.450983 GCCAATGTCTGAAGCTGCTC 59.549 55.000 1.00 0.00 0.00 4.26
3264 3504 0.251033 TGCCAATGTCTGAAGCTGCT 60.251 50.000 0.00 0.00 0.00 4.24
3265 3505 0.815734 ATGCCAATGTCTGAAGCTGC 59.184 50.000 0.00 0.00 0.00 5.25
3266 3506 1.404391 GGATGCCAATGTCTGAAGCTG 59.596 52.381 0.00 0.00 0.00 4.24
3267 3507 1.284198 AGGATGCCAATGTCTGAAGCT 59.716 47.619 0.00 0.00 0.00 3.74
3268 3508 1.404391 CAGGATGCCAATGTCTGAAGC 59.596 52.381 0.00 0.00 0.00 3.86
3282 3522 0.971386 AACCAAAAGGCTGCAGGATG 59.029 50.000 17.12 0.00 40.87 3.51
3283 3523 0.971386 CAACCAAAAGGCTGCAGGAT 59.029 50.000 17.12 0.00 0.00 3.24
3284 3524 1.747325 GCAACCAAAAGGCTGCAGGA 61.747 55.000 17.12 0.00 34.87 3.86
3285 3525 1.301165 GCAACCAAAAGGCTGCAGG 60.301 57.895 17.12 0.00 34.87 4.85
3286 3526 0.179078 TTGCAACCAAAAGGCTGCAG 60.179 50.000 10.11 10.11 44.94 4.41
3287 3527 0.469070 ATTGCAACCAAAAGGCTGCA 59.531 45.000 0.00 8.39 42.79 4.41
3288 3528 1.150827 GATTGCAACCAAAAGGCTGC 58.849 50.000 0.00 3.08 34.05 5.25
3289 3529 2.036217 TCTGATTGCAACCAAAAGGCTG 59.964 45.455 0.00 0.00 34.05 4.85
3290 3530 2.318908 TCTGATTGCAACCAAAAGGCT 58.681 42.857 0.00 0.00 34.05 4.58
3291 3531 2.818130 TCTGATTGCAACCAAAAGGC 57.182 45.000 0.00 0.00 34.05 4.35
3292 3532 5.528320 ACAAATTCTGATTGCAACCAAAAGG 59.472 36.000 0.00 0.00 34.05 3.11
3293 3533 6.258287 TGACAAATTCTGATTGCAACCAAAAG 59.742 34.615 0.00 0.00 34.05 2.27
3294 3534 6.036953 GTGACAAATTCTGATTGCAACCAAAA 59.963 34.615 0.00 0.00 34.05 2.44
3295 3535 5.523188 GTGACAAATTCTGATTGCAACCAAA 59.477 36.000 0.00 0.00 34.05 3.28
3296 3536 5.049167 GTGACAAATTCTGATTGCAACCAA 58.951 37.500 0.00 0.00 35.01 3.67
3297 3537 4.099113 TGTGACAAATTCTGATTGCAACCA 59.901 37.500 0.00 0.00 0.00 3.67
3298 3538 4.619973 TGTGACAAATTCTGATTGCAACC 58.380 39.130 0.00 0.00 0.00 3.77
3299 3539 5.176223 CCTTGTGACAAATTCTGATTGCAAC 59.824 40.000 0.00 0.00 0.00 4.17
3300 3540 5.291178 CCTTGTGACAAATTCTGATTGCAA 58.709 37.500 0.00 0.00 0.00 4.08
3301 3541 4.262121 CCCTTGTGACAAATTCTGATTGCA 60.262 41.667 0.00 0.00 0.00 4.08
3302 3542 4.022068 TCCCTTGTGACAAATTCTGATTGC 60.022 41.667 0.00 0.00 0.00 3.56
3303 3543 5.710513 TCCCTTGTGACAAATTCTGATTG 57.289 39.130 0.00 0.00 0.00 2.67
3304 3544 6.096001 GCTATCCCTTGTGACAAATTCTGATT 59.904 38.462 0.00 0.00 0.00 2.57
3305 3545 5.591877 GCTATCCCTTGTGACAAATTCTGAT 59.408 40.000 0.00 0.54 0.00 2.90
3306 3546 4.943705 GCTATCCCTTGTGACAAATTCTGA 59.056 41.667 0.00 0.00 0.00 3.27
3307 3547 4.701651 TGCTATCCCTTGTGACAAATTCTG 59.298 41.667 0.00 0.00 0.00 3.02
3308 3548 4.702131 GTGCTATCCCTTGTGACAAATTCT 59.298 41.667 0.00 0.00 0.00 2.40
3309 3549 4.437390 CGTGCTATCCCTTGTGACAAATTC 60.437 45.833 0.00 0.00 0.00 2.17
3310 3550 3.440173 CGTGCTATCCCTTGTGACAAATT 59.560 43.478 0.00 0.00 0.00 1.82
3311 3551 3.009723 CGTGCTATCCCTTGTGACAAAT 58.990 45.455 0.00 0.00 0.00 2.32
3312 3552 2.422597 CGTGCTATCCCTTGTGACAAA 58.577 47.619 0.00 0.00 0.00 2.83
3313 3553 1.338674 CCGTGCTATCCCTTGTGACAA 60.339 52.381 0.00 0.00 0.00 3.18
3314 3554 0.249120 CCGTGCTATCCCTTGTGACA 59.751 55.000 0.00 0.00 0.00 3.58
3315 3555 0.535335 TCCGTGCTATCCCTTGTGAC 59.465 55.000 0.00 0.00 0.00 3.67
3316 3556 0.535335 GTCCGTGCTATCCCTTGTGA 59.465 55.000 0.00 0.00 0.00 3.58
3317 3557 0.537188 AGTCCGTGCTATCCCTTGTG 59.463 55.000 0.00 0.00 0.00 3.33
3318 3558 0.537188 CAGTCCGTGCTATCCCTTGT 59.463 55.000 0.00 0.00 0.00 3.16
3319 3559 0.537188 ACAGTCCGTGCTATCCCTTG 59.463 55.000 0.00 0.00 0.00 3.61
3320 3560 0.537188 CACAGTCCGTGCTATCCCTT 59.463 55.000 0.00 0.00 39.19 3.95
3321 3561 0.324368 TCACAGTCCGTGCTATCCCT 60.324 55.000 0.00 0.00 45.92 4.20
3322 3562 0.753262 ATCACAGTCCGTGCTATCCC 59.247 55.000 0.00 0.00 45.92 3.85
3323 3563 2.604046 AATCACAGTCCGTGCTATCC 57.396 50.000 0.00 0.00 45.92 2.59
3324 3564 4.871513 TGATAATCACAGTCCGTGCTATC 58.128 43.478 0.00 0.00 45.92 2.08
3325 3565 4.262207 CCTGATAATCACAGTCCGTGCTAT 60.262 45.833 0.00 0.00 45.92 2.97
3326 3566 3.068165 CCTGATAATCACAGTCCGTGCTA 59.932 47.826 0.00 0.00 45.92 3.49
3327 3567 2.159043 CCTGATAATCACAGTCCGTGCT 60.159 50.000 0.00 0.00 45.92 4.40
3328 3568 2.205074 CCTGATAATCACAGTCCGTGC 58.795 52.381 0.00 0.00 45.92 5.34
3330 3570 3.383825 GGTACCTGATAATCACAGTCCGT 59.616 47.826 4.06 0.00 34.04 4.69
3331 3571 3.978687 GGTACCTGATAATCACAGTCCG 58.021 50.000 4.06 0.00 34.04 4.79
3348 3588 7.520451 ACTAAAGGAAATGAAAACTGGGTAC 57.480 36.000 0.00 0.00 0.00 3.34
3349 3589 6.428771 CGACTAAAGGAAATGAAAACTGGGTA 59.571 38.462 0.00 0.00 0.00 3.69
3350 3590 5.240844 CGACTAAAGGAAATGAAAACTGGGT 59.759 40.000 0.00 0.00 0.00 4.51
3351 3591 5.699839 CGACTAAAGGAAATGAAAACTGGG 58.300 41.667 0.00 0.00 0.00 4.45
3352 3592 5.154222 GCGACTAAAGGAAATGAAAACTGG 58.846 41.667 0.00 0.00 0.00 4.00
3353 3593 5.154222 GGCGACTAAAGGAAATGAAAACTG 58.846 41.667 0.00 0.00 0.00 3.16
3354 3594 4.217767 GGGCGACTAAAGGAAATGAAAACT 59.782 41.667 0.00 0.00 0.00 2.66
3355 3595 4.482386 GGGCGACTAAAGGAAATGAAAAC 58.518 43.478 0.00 0.00 0.00 2.43
3356 3596 3.189702 CGGGCGACTAAAGGAAATGAAAA 59.810 43.478 0.00 0.00 0.00 2.29
3357 3597 2.745281 CGGGCGACTAAAGGAAATGAAA 59.255 45.455 0.00 0.00 0.00 2.69
3358 3598 2.352388 CGGGCGACTAAAGGAAATGAA 58.648 47.619 0.00 0.00 0.00 2.57
3359 3599 2.010043 GCGGGCGACTAAAGGAAATGA 61.010 52.381 0.00 0.00 0.00 2.57
3360 3600 0.377203 GCGGGCGACTAAAGGAAATG 59.623 55.000 0.00 0.00 0.00 2.32
3361 3601 0.746923 GGCGGGCGACTAAAGGAAAT 60.747 55.000 0.00 0.00 0.00 2.17
3362 3602 1.376295 GGCGGGCGACTAAAGGAAA 60.376 57.895 0.00 0.00 0.00 3.13
3363 3603 2.266689 GGCGGGCGACTAAAGGAA 59.733 61.111 0.00 0.00 0.00 3.36
3364 3604 4.137872 CGGCGGGCGACTAAAGGA 62.138 66.667 20.10 0.00 0.00 3.36
3374 3614 0.736636 AAATACTTTTAGCGGCGGGC 59.263 50.000 9.78 0.00 44.05 6.13
3375 3615 2.546789 CCTAAATACTTTTAGCGGCGGG 59.453 50.000 9.78 0.00 41.94 6.13
3376 3616 3.460103 TCCTAAATACTTTTAGCGGCGG 58.540 45.455 9.78 0.00 41.94 6.13
3377 3617 3.493503 CCTCCTAAATACTTTTAGCGGCG 59.506 47.826 0.51 0.51 41.94 6.46
3378 3618 3.250280 GCCTCCTAAATACTTTTAGCGGC 59.750 47.826 15.11 15.11 44.26 6.53
3379 3619 4.448210 TGCCTCCTAAATACTTTTAGCGG 58.552 43.478 0.91 4.62 41.94 5.52
3380 3620 6.431198 TTTGCCTCCTAAATACTTTTAGCG 57.569 37.500 0.91 0.00 41.94 4.26
3381 3621 8.466798 TGAATTTGCCTCCTAAATACTTTTAGC 58.533 33.333 0.91 0.00 41.94 3.09
3385 3625 9.875691 GAATTGAATTTGCCTCCTAAATACTTT 57.124 29.630 0.00 0.00 0.00 2.66
3386 3626 8.478066 GGAATTGAATTTGCCTCCTAAATACTT 58.522 33.333 0.00 0.00 0.00 2.24
3387 3627 7.619302 TGGAATTGAATTTGCCTCCTAAATACT 59.381 33.333 0.00 0.00 0.00 2.12
3388 3628 7.781056 TGGAATTGAATTTGCCTCCTAAATAC 58.219 34.615 0.00 0.00 0.00 1.89
3389 3629 7.969690 TGGAATTGAATTTGCCTCCTAAATA 57.030 32.000 0.00 0.00 0.00 1.40
3390 3630 6.872585 TGGAATTGAATTTGCCTCCTAAAT 57.127 33.333 0.00 0.00 0.00 1.40
3391 3631 6.295802 CCTTGGAATTGAATTTGCCTCCTAAA 60.296 38.462 0.00 0.00 0.00 1.85
3392 3632 5.187576 CCTTGGAATTGAATTTGCCTCCTAA 59.812 40.000 0.00 0.00 0.00 2.69
3393 3633 4.711355 CCTTGGAATTGAATTTGCCTCCTA 59.289 41.667 0.00 0.00 0.00 2.94
3394 3634 3.516700 CCTTGGAATTGAATTTGCCTCCT 59.483 43.478 0.00 0.00 0.00 3.69
3395 3635 3.865446 CCTTGGAATTGAATTTGCCTCC 58.135 45.455 0.00 0.00 0.00 4.30
3396 3636 3.264947 GCCTTGGAATTGAATTTGCCTC 58.735 45.455 0.00 0.00 0.00 4.70
3397 3637 2.026915 GGCCTTGGAATTGAATTTGCCT 60.027 45.455 0.00 0.00 33.64 4.75
3398 3638 2.290197 TGGCCTTGGAATTGAATTTGCC 60.290 45.455 3.32 1.34 36.90 4.52
3399 3639 3.056588 TGGCCTTGGAATTGAATTTGC 57.943 42.857 3.32 0.00 0.00 3.68
3400 3640 5.474189 ACAATTGGCCTTGGAATTGAATTTG 59.526 36.000 25.19 8.66 40.53 2.32
3401 3641 5.633117 ACAATTGGCCTTGGAATTGAATTT 58.367 33.333 25.19 7.11 40.53 1.82
3402 3642 5.245584 ACAATTGGCCTTGGAATTGAATT 57.754 34.783 25.19 9.10 40.53 2.17
3403 3643 4.914177 ACAATTGGCCTTGGAATTGAAT 57.086 36.364 25.19 7.96 40.53 2.57
3404 3644 4.590647 TGTACAATTGGCCTTGGAATTGAA 59.409 37.500 25.19 12.29 40.53 2.69
3405 3645 4.155709 TGTACAATTGGCCTTGGAATTGA 58.844 39.130 25.19 11.50 40.53 2.57
3406 3646 4.533919 TGTACAATTGGCCTTGGAATTG 57.466 40.909 19.53 19.53 42.71 2.32
3407 3647 4.563374 GCTTGTACAATTGGCCTTGGAATT 60.563 41.667 9.13 0.00 0.00 2.17
3408 3648 3.055891 GCTTGTACAATTGGCCTTGGAAT 60.056 43.478 9.13 0.00 0.00 3.01
3409 3649 2.298729 GCTTGTACAATTGGCCTTGGAA 59.701 45.455 9.13 0.00 0.00 3.53
3410 3650 1.892474 GCTTGTACAATTGGCCTTGGA 59.108 47.619 9.13 0.00 0.00 3.53
3411 3651 2.368655 GCTTGTACAATTGGCCTTGG 57.631 50.000 9.13 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.