Multiple sequence alignment - TraesCS1B01G051100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G051100 chr1B 100.000 5645 0 0 1 5645 30884103 30878459 0.000000e+00 10425.0
1 TraesCS1B01G051100 chr1B 94.118 85 4 1 1723 1806 156585899 156585815 1.650000e-25 128.0
2 TraesCS1B01G051100 chr1A 94.075 1654 85 4 3074 4719 18291843 18290195 0.000000e+00 2499.0
3 TraesCS1B01G051100 chr1A 90.508 1201 77 22 1894 3088 18293044 18291875 0.000000e+00 1552.0
4 TraesCS1B01G051100 chr1A 94.240 816 35 7 903 1708 18293913 18293100 0.000000e+00 1236.0
5 TraesCS1B01G051100 chr1A 88.462 416 37 7 4963 5370 18289916 18289504 5.080000e-135 492.0
6 TraesCS1B01G051100 chr1A 81.921 177 17 9 4758 4933 18290192 18290030 9.870000e-28 135.0
7 TraesCS1B01G051100 chr1D 94.659 1554 71 7 2476 4024 16971367 16969821 0.000000e+00 2399.0
8 TraesCS1B01G051100 chr1D 95.443 812 37 0 4022 4833 16966543 16965732 0.000000e+00 1295.0
9 TraesCS1B01G051100 chr1D 94.776 804 27 8 795 1593 16972895 16972102 0.000000e+00 1238.0
10 TraesCS1B01G051100 chr1D 84.436 816 77 18 4024 4820 17012890 17013674 0.000000e+00 758.0
11 TraesCS1B01G051100 chr1D 86.789 598 50 16 3390 3981 17012310 17012884 1.710000e-179 640.0
12 TraesCS1B01G051100 chr1D 87.238 525 54 10 1927 2448 16971877 16971363 2.270000e-163 586.0
13 TraesCS1B01G051100 chr1D 90.451 377 31 4 4995 5370 16962418 16962046 5.080000e-135 492.0
14 TraesCS1B01G051100 chr1D 86.375 411 42 9 4967 5366 16965473 16965066 2.410000e-118 436.0
15 TraesCS1B01G051100 chr1D 87.055 309 35 4 4967 5272 17013890 17014196 1.510000e-90 344.0
16 TraesCS1B01G051100 chr1D 100.000 29 0 0 772 800 16972984 16972956 3.000000e-03 54.7
17 TraesCS1B01G051100 chr6A 97.468 711 18 0 1 711 574650444 574651154 0.000000e+00 1214.0
18 TraesCS1B01G051100 chr6A 97.328 711 19 0 1 711 234188627 234189337 0.000000e+00 1208.0
19 TraesCS1B01G051100 chr6A 97.187 711 20 0 1 711 222651062 222651772 0.000000e+00 1203.0
20 TraesCS1B01G051100 chr4A 97.468 711 18 0 1 711 624980921 624981631 0.000000e+00 1214.0
21 TraesCS1B01G051100 chr4A 93.103 87 4 1 1720 1804 738728213 738728299 5.940000e-25 126.0
22 TraesCS1B01G051100 chr7B 97.187 711 20 0 1 711 443304797 443304087 0.000000e+00 1203.0
23 TraesCS1B01G051100 chr5B 97.187 711 20 0 1 711 287776758 287776048 0.000000e+00 1203.0
24 TraesCS1B01G051100 chr5B 94.382 89 3 1 1717 1803 526271388 526271476 9.870000e-28 135.0
25 TraesCS1B01G051100 chr5A 97.187 711 20 0 1 711 82312534 82313244 0.000000e+00 1203.0
26 TraesCS1B01G051100 chr5A 97.187 711 20 0 1 711 257362140 257362850 0.000000e+00 1203.0
27 TraesCS1B01G051100 chr2B 97.187 711 20 0 1 711 256482680 256481970 0.000000e+00 1203.0
28 TraesCS1B01G051100 chr2B 91.579 95 5 2 1720 1811 28425393 28425487 1.650000e-25 128.0
29 TraesCS1B01G051100 chr2B 92.222 90 5 1 1718 1805 700412181 700412092 5.940000e-25 126.0
30 TraesCS1B01G051100 chr7D 80.887 293 36 10 4967 5243 606955979 606956267 4.430000e-51 213.0
31 TraesCS1B01G051100 chr7D 79.344 305 47 9 4968 5258 606946123 606946425 3.450000e-47 200.0
32 TraesCS1B01G051100 chr7A 89.222 167 11 6 5051 5213 699476390 699476227 9.590000e-48 202.0
33 TraesCS1B01G051100 chr7A 78.689 305 48 10 4968 5258 699387246 699386945 2.690000e-43 187.0
34 TraesCS1B01G051100 chr7A 78.205 312 49 13 4968 5264 699409304 699408997 1.250000e-41 182.0
35 TraesCS1B01G051100 chr7A 93.182 88 4 1 1718 1803 435835177 435835264 1.650000e-25 128.0
36 TraesCS1B01G051100 chr3B 95.238 84 4 0 1720 1803 193961303 193961386 3.550000e-27 134.0
37 TraesCS1B01G051100 chr3B 96.296 81 3 0 1723 1803 193961383 193961303 3.550000e-27 134.0
38 TraesCS1B01G051100 chr6D 93.258 89 4 1 1717 1803 2392909 2392997 4.590000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G051100 chr1B 30878459 30884103 5644 True 10425.000000 10425 100.000000 1 5645 1 chr1B.!!$R1 5644
1 TraesCS1B01G051100 chr1A 18289504 18293913 4409 True 1182.800000 2499 89.841200 903 5370 5 chr1A.!!$R1 4467
2 TraesCS1B01G051100 chr1D 16962046 16972984 10938 True 928.671429 2399 92.706000 772 5370 7 chr1D.!!$R1 4598
3 TraesCS1B01G051100 chr1D 17012310 17014196 1886 False 580.666667 758 86.093333 3390 5272 3 chr1D.!!$F1 1882
4 TraesCS1B01G051100 chr6A 574650444 574651154 710 False 1214.000000 1214 97.468000 1 711 1 chr6A.!!$F3 710
5 TraesCS1B01G051100 chr6A 234188627 234189337 710 False 1208.000000 1208 97.328000 1 711 1 chr6A.!!$F2 710
6 TraesCS1B01G051100 chr6A 222651062 222651772 710 False 1203.000000 1203 97.187000 1 711 1 chr6A.!!$F1 710
7 TraesCS1B01G051100 chr4A 624980921 624981631 710 False 1214.000000 1214 97.468000 1 711 1 chr4A.!!$F1 710
8 TraesCS1B01G051100 chr7B 443304087 443304797 710 True 1203.000000 1203 97.187000 1 711 1 chr7B.!!$R1 710
9 TraesCS1B01G051100 chr5B 287776048 287776758 710 True 1203.000000 1203 97.187000 1 711 1 chr5B.!!$R1 710
10 TraesCS1B01G051100 chr5A 82312534 82313244 710 False 1203.000000 1203 97.187000 1 711 1 chr5A.!!$F1 710
11 TraesCS1B01G051100 chr5A 257362140 257362850 710 False 1203.000000 1203 97.187000 1 711 1 chr5A.!!$F2 710
12 TraesCS1B01G051100 chr2B 256481970 256482680 710 True 1203.000000 1203 97.187000 1 711 1 chr2B.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 906 0.332972 AGCCCAGGAACAGAATTCCC 59.667 55.0 0.65 0.0 39.39 3.97 F
2268 2422 0.108186 TGTGGATTCAGCTGTAGCCG 60.108 55.0 20.77 0.0 43.38 5.52 F
2868 3022 0.460311 GTAGGTGTCTGGACCGGATG 59.540 60.0 9.46 0.0 41.35 3.51 F
2942 3096 0.474184 GGTGGTGCTATGTATGGGCT 59.526 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2494 2648 0.030504 TCACAGCGCAAACACAATGG 59.969 50.000 11.47 0.0 0.00 3.16 R
3898 4111 0.974010 CCGTACCACTTCCTAGGCCA 60.974 60.000 5.01 0.0 0.00 5.36 R
4561 8072 1.199327 ACAGACGACATCCTGTGTACG 59.801 52.381 0.00 0.0 42.36 3.67 R
4877 8448 0.826715 ACAGCTACGCATGATCCAGT 59.173 50.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.524961 CCTACTTGCGGGGCATACA 59.475 57.895 0.00 0.00 38.76 2.29
100 101 3.595428 ATCCGGTCCCCACGTCTCA 62.595 63.158 0.00 0.00 0.00 3.27
185 186 2.735883 CGTCCCCGTGTACCACAA 59.264 61.111 0.00 0.00 33.40 3.33
186 187 1.294138 CGTCCCCGTGTACCACAAT 59.706 57.895 0.00 0.00 33.40 2.71
235 236 2.026822 GCCTTCTGTCCTCTCCATTTGA 60.027 50.000 0.00 0.00 0.00 2.69
322 323 2.281539 TGTCAGAGACCCTACGTTCA 57.718 50.000 0.00 0.00 0.00 3.18
371 372 1.838077 GGCTAGCTTCCTTACCCTTCA 59.162 52.381 15.72 0.00 0.00 3.02
511 512 1.378882 AAGATACGACGCGCCACCTA 61.379 55.000 5.73 0.00 0.00 3.08
684 685 2.070650 CCTCCTCCTTTACCCGGGG 61.071 68.421 27.92 12.73 0.00 5.73
711 712 2.224426 ACCGGCTATGTTGAGACAACAA 60.224 45.455 18.63 9.29 39.66 2.83
712 713 2.159627 CCGGCTATGTTGAGACAACAAC 59.840 50.000 18.63 12.10 46.83 3.32
802 869 3.190874 GCAAAAGAGAGATAGGGACGTG 58.809 50.000 0.00 0.00 0.00 4.49
810 877 1.761198 AGATAGGGACGTGTAAAGGCC 59.239 52.381 0.00 0.00 46.05 5.19
837 904 0.813821 GCAGCCCAGGAACAGAATTC 59.186 55.000 0.00 0.00 0.00 2.17
838 905 1.467920 CAGCCCAGGAACAGAATTCC 58.532 55.000 0.65 0.00 38.86 3.01
839 906 0.332972 AGCCCAGGAACAGAATTCCC 59.667 55.000 0.65 0.00 39.39 3.97
867 934 2.360475 GACAGCCCAGAACCAGCC 60.360 66.667 0.00 0.00 0.00 4.85
930 997 3.186047 CGCCCGTGAAACCTAGCG 61.186 66.667 0.00 0.00 39.19 4.26
1044 1117 3.787001 CACCCGCTCCCCTTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
1047 1120 3.391382 CCGCTCCCCTTCTCCGTT 61.391 66.667 0.00 0.00 0.00 4.44
1289 1362 2.711922 CCTCCTCCTTCGACACCGG 61.712 68.421 0.00 0.00 36.24 5.28
1464 1537 1.152673 GGATGGGAAGGGCATGTCC 60.153 63.158 8.79 8.79 0.00 4.02
1472 1545 3.463585 GGGCATGTCCGGGTACGA 61.464 66.667 0.00 0.00 44.60 3.43
1593 1666 1.071471 CAAGGGCGTCTGGTGAGTT 59.929 57.895 0.00 0.00 0.00 3.01
1594 1667 0.535102 CAAGGGCGTCTGGTGAGTTT 60.535 55.000 0.00 0.00 0.00 2.66
1597 1682 0.951040 GGGCGTCTGGTGAGTTTCTG 60.951 60.000 0.00 0.00 0.00 3.02
1649 1754 1.238625 TGGTTTCCGCCGATTGTTCC 61.239 55.000 0.00 0.00 0.00 3.62
1693 1798 8.478877 ACTTCACTAGTTCTGTTATTATCTGGG 58.521 37.037 0.00 0.00 31.29 4.45
1694 1799 7.973048 TCACTAGTTCTGTTATTATCTGGGT 57.027 36.000 0.00 0.00 0.00 4.51
1695 1800 9.483489 TTCACTAGTTCTGTTATTATCTGGGTA 57.517 33.333 0.00 0.00 0.00 3.69
1708 1813 3.138123 TCTGGGTATGGTATGGTTGGA 57.862 47.619 0.00 0.00 0.00 3.53
1712 1817 2.445525 GGGTATGGTATGGTTGGATGGT 59.554 50.000 0.00 0.00 0.00 3.55
1718 1823 6.729690 ATGGTATGGTTGGATGGTAAATTG 57.270 37.500 0.00 0.00 0.00 2.32
1722 1827 7.841729 TGGTATGGTTGGATGGTAAATTGTATT 59.158 33.333 0.00 0.00 0.00 1.89
1723 1828 8.357402 GGTATGGTTGGATGGTAAATTGTATTC 58.643 37.037 0.00 0.00 0.00 1.75
1724 1829 6.783708 TGGTTGGATGGTAAATTGTATTCC 57.216 37.500 0.00 0.00 0.00 3.01
1725 1830 5.659079 TGGTTGGATGGTAAATTGTATTCCC 59.341 40.000 0.00 0.00 0.00 3.97
1726 1831 5.897250 GGTTGGATGGTAAATTGTATTCCCT 59.103 40.000 0.00 0.00 0.00 4.20
1727 1832 6.040504 GGTTGGATGGTAAATTGTATTCCCTC 59.959 42.308 0.00 0.00 0.00 4.30
1728 1833 5.701224 TGGATGGTAAATTGTATTCCCTCC 58.299 41.667 0.00 0.00 34.88 4.30
1729 1834 4.760204 GGATGGTAAATTGTATTCCCTCCG 59.240 45.833 0.00 0.00 0.00 4.63
1730 1835 4.847990 TGGTAAATTGTATTCCCTCCGT 57.152 40.909 0.00 0.00 0.00 4.69
1731 1836 5.182169 TGGTAAATTGTATTCCCTCCGTT 57.818 39.130 0.00 0.00 0.00 4.44
1732 1837 5.187687 TGGTAAATTGTATTCCCTCCGTTC 58.812 41.667 0.00 0.00 0.00 3.95
1733 1838 5.187687 GGTAAATTGTATTCCCTCCGTTCA 58.812 41.667 0.00 0.00 0.00 3.18
1734 1839 5.296035 GGTAAATTGTATTCCCTCCGTTCAG 59.704 44.000 0.00 0.00 0.00 3.02
1735 1840 4.837093 AATTGTATTCCCTCCGTTCAGA 57.163 40.909 0.00 0.00 0.00 3.27
1736 1841 5.373812 AATTGTATTCCCTCCGTTCAGAT 57.626 39.130 0.00 0.00 0.00 2.90
1737 1842 4.837093 TTGTATTCCCTCCGTTCAGATT 57.163 40.909 0.00 0.00 0.00 2.40
1738 1843 4.837093 TGTATTCCCTCCGTTCAGATTT 57.163 40.909 0.00 0.00 0.00 2.17
1739 1844 5.943349 TGTATTCCCTCCGTTCAGATTTA 57.057 39.130 0.00 0.00 0.00 1.40
1740 1845 5.914033 TGTATTCCCTCCGTTCAGATTTAG 58.086 41.667 0.00 0.00 0.00 1.85
1741 1846 5.424252 TGTATTCCCTCCGTTCAGATTTAGT 59.576 40.000 0.00 0.00 0.00 2.24
1742 1847 4.467198 TTCCCTCCGTTCAGATTTAGTC 57.533 45.455 0.00 0.00 0.00 2.59
1743 1848 2.426024 TCCCTCCGTTCAGATTTAGTCG 59.574 50.000 0.00 0.00 0.00 4.18
1744 1849 2.165845 CCCTCCGTTCAGATTTAGTCGT 59.834 50.000 0.00 0.00 0.00 4.34
1745 1850 3.436496 CCTCCGTTCAGATTTAGTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
1746 1851 3.099362 CTCCGTTCAGATTTAGTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
1747 1852 2.485426 TCCGTTCAGATTTAGTCGTCGT 59.515 45.455 0.00 0.00 0.00 4.34
1748 1853 2.592897 CCGTTCAGATTTAGTCGTCGTG 59.407 50.000 0.00 0.00 0.00 4.35
1749 1854 2.592897 CGTTCAGATTTAGTCGTCGTGG 59.407 50.000 0.00 0.00 0.00 4.94
1750 1855 3.572584 GTTCAGATTTAGTCGTCGTGGT 58.427 45.455 0.00 0.00 0.00 4.16
1751 1856 3.928727 TCAGATTTAGTCGTCGTGGTT 57.071 42.857 0.00 0.00 0.00 3.67
1752 1857 4.247267 TCAGATTTAGTCGTCGTGGTTT 57.753 40.909 0.00 0.00 0.00 3.27
1753 1858 4.624015 TCAGATTTAGTCGTCGTGGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
1754 1859 5.771469 TCAGATTTAGTCGTCGTGGTTTTA 58.229 37.500 0.00 0.00 0.00 1.52
1755 1860 5.860182 TCAGATTTAGTCGTCGTGGTTTTAG 59.140 40.000 0.00 0.00 0.00 1.85
1756 1861 5.632347 CAGATTTAGTCGTCGTGGTTTTAGT 59.368 40.000 0.00 0.00 0.00 2.24
1757 1862 6.145048 CAGATTTAGTCGTCGTGGTTTTAGTT 59.855 38.462 0.00 0.00 0.00 2.24
1758 1863 5.888412 TTTAGTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
1759 1864 3.441496 AGTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1760 1865 3.784338 AGTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1761 1866 4.374399 AGTCGTCGTGGTTTTAGTTCAAT 58.626 39.130 0.00 0.00 0.00 2.57
1762 1867 4.812626 AGTCGTCGTGGTTTTAGTTCAATT 59.187 37.500 0.00 0.00 0.00 2.32
1763 1868 4.901881 GTCGTCGTGGTTTTAGTTCAATTG 59.098 41.667 0.00 0.00 0.00 2.32
1764 1869 4.809958 TCGTCGTGGTTTTAGTTCAATTGA 59.190 37.500 3.38 3.38 0.00 2.57
1765 1870 5.293814 TCGTCGTGGTTTTAGTTCAATTGAA 59.706 36.000 16.91 16.91 0.00 2.69
1780 1885 6.438259 TCAATTGAACTAAAACCACAACGA 57.562 33.333 5.45 0.00 0.00 3.85
1781 1886 6.491394 TCAATTGAACTAAAACCACAACGAG 58.509 36.000 5.45 0.00 0.00 4.18
1782 1887 6.094325 TCAATTGAACTAAAACCACAACGAGT 59.906 34.615 5.45 0.00 0.00 4.18
1783 1888 7.280428 TCAATTGAACTAAAACCACAACGAGTA 59.720 33.333 5.45 0.00 0.00 2.59
1784 1889 6.981762 TTGAACTAAAACCACAACGAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
1785 1890 6.981762 TGAACTAAAACCACAACGAGTAAA 57.018 33.333 0.00 0.00 0.00 2.01
1786 1891 7.556733 TGAACTAAAACCACAACGAGTAAAT 57.443 32.000 0.00 0.00 0.00 1.40
1787 1892 7.632721 TGAACTAAAACCACAACGAGTAAATC 58.367 34.615 0.00 0.00 0.00 2.17
1813 1918 1.412361 GGAGGGAGTATCTCAGTGGCT 60.412 57.143 0.00 0.00 38.91 4.75
1823 1928 2.910199 TCTCAGTGGCTATGCATTGAC 58.090 47.619 12.54 9.88 0.00 3.18
1830 1935 1.086696 GCTATGCATTGACACACGGT 58.913 50.000 12.54 0.00 0.00 4.83
1844 1949 5.529430 TGACACACGGTTACTTCATTTCAAT 59.471 36.000 0.00 0.00 0.00 2.57
1852 1957 7.280205 ACGGTTACTTCATTTCAATCAGATACC 59.720 37.037 0.00 0.00 0.00 2.73
1853 1958 7.495934 CGGTTACTTCATTTCAATCAGATACCT 59.504 37.037 0.00 0.00 0.00 3.08
1854 1959 9.178758 GGTTACTTCATTTCAATCAGATACCTT 57.821 33.333 0.00 0.00 0.00 3.50
1857 1962 8.286191 ACTTCATTTCAATCAGATACCTTTCC 57.714 34.615 0.00 0.00 0.00 3.13
1858 1963 7.340487 ACTTCATTTCAATCAGATACCTTTCCC 59.660 37.037 0.00 0.00 0.00 3.97
1859 1964 6.730447 TCATTTCAATCAGATACCTTTCCCA 58.270 36.000 0.00 0.00 0.00 4.37
1860 1965 7.356680 TCATTTCAATCAGATACCTTTCCCAT 58.643 34.615 0.00 0.00 0.00 4.00
1861 1966 7.840716 TCATTTCAATCAGATACCTTTCCCATT 59.159 33.333 0.00 0.00 0.00 3.16
1862 1967 8.480501 CATTTCAATCAGATACCTTTCCCATTT 58.519 33.333 0.00 0.00 0.00 2.32
1863 1968 7.645058 TTCAATCAGATACCTTTCCCATTTC 57.355 36.000 0.00 0.00 0.00 2.17
1864 1969 6.973642 TCAATCAGATACCTTTCCCATTTCT 58.026 36.000 0.00 0.00 0.00 2.52
1906 2011 9.716531 GTAAGGTAAGGTTTACTCTATGTGTTT 57.283 33.333 0.00 0.00 0.00 2.83
1944 2079 7.984617 TCATGTCAAGATGATTATGTTCGGTAA 59.015 33.333 0.00 0.00 30.73 2.85
1962 2097 8.898792 GTTCGGTAACAGTTTGATTCAAAATAC 58.101 33.333 13.21 12.79 34.00 1.89
1978 2126 8.925161 TTCAAAATACTATGTAAATGCTTGGC 57.075 30.769 0.00 0.00 0.00 4.52
1979 2127 7.488322 TCAAAATACTATGTAAATGCTTGGCC 58.512 34.615 0.00 0.00 0.00 5.36
1980 2128 7.123397 TCAAAATACTATGTAAATGCTTGGCCA 59.877 33.333 0.00 0.00 0.00 5.36
1981 2129 7.601705 AAATACTATGTAAATGCTTGGCCAT 57.398 32.000 6.09 0.00 0.00 4.40
1982 2130 6.824305 ATACTATGTAAATGCTTGGCCATC 57.176 37.500 6.09 1.67 0.00 3.51
1983 2131 4.796606 ACTATGTAAATGCTTGGCCATCT 58.203 39.130 6.09 0.00 0.00 2.90
1984 2132 5.203528 ACTATGTAAATGCTTGGCCATCTT 58.796 37.500 6.09 0.00 0.00 2.40
1985 2133 6.364701 ACTATGTAAATGCTTGGCCATCTTA 58.635 36.000 6.09 0.00 0.00 2.10
1986 2134 7.006509 ACTATGTAAATGCTTGGCCATCTTAT 58.993 34.615 6.09 0.00 0.00 1.73
1987 2135 8.163408 ACTATGTAAATGCTTGGCCATCTTATA 58.837 33.333 6.09 0.00 0.00 0.98
1988 2136 9.182214 CTATGTAAATGCTTGGCCATCTTATAT 57.818 33.333 6.09 6.75 0.00 0.86
1989 2137 7.218228 TGTAAATGCTTGGCCATCTTATATG 57.782 36.000 6.09 0.00 0.00 1.78
1990 2138 5.733620 AAATGCTTGGCCATCTTATATGG 57.266 39.130 6.09 0.00 41.99 2.74
2000 2148 5.909621 CCATCTTATATGGCCCATTTCTG 57.090 43.478 0.00 0.00 31.75 3.02
2017 2165 1.696336 TCTGGGAGGCTATTGCTCATC 59.304 52.381 0.00 0.00 39.59 2.92
2018 2166 1.419012 CTGGGAGGCTATTGCTCATCA 59.581 52.381 0.00 0.00 39.59 3.07
2037 2191 7.274250 GCTCATCAGTTTTTCATTTTATTCGCT 59.726 33.333 0.00 0.00 0.00 4.93
2079 2233 1.412079 TGCAGGTGCCAAACTTCATT 58.588 45.000 0.00 0.00 41.18 2.57
2086 2240 2.229784 GTGCCAAACTTCATTAGCTGCT 59.770 45.455 7.57 7.57 0.00 4.24
2114 2268 4.635765 TGTCTGCCTATGTTTGAAGCATAC 59.364 41.667 0.00 0.00 32.86 2.39
2121 2275 6.238211 GCCTATGTTTGAAGCATACTGTACTG 60.238 42.308 0.00 0.00 0.00 2.74
2233 2387 1.892209 ACGGCTTTTAGGTCCAAGTG 58.108 50.000 0.00 0.00 0.00 3.16
2247 2401 0.859232 CAAGTGTACTCGCGCAAGTT 59.141 50.000 6.19 0.00 41.68 2.66
2268 2422 0.108186 TGTGGATTCAGCTGTAGCCG 60.108 55.000 20.77 0.00 43.38 5.52
2280 2434 2.359850 TAGCCGCCCAGCAAACAG 60.360 61.111 0.00 0.00 34.23 3.16
2291 2445 4.579869 CCCAGCAAACAGATAGTTGTACT 58.420 43.478 0.00 0.00 41.19 2.73
2324 2478 8.408601 GTTCTTTCACATGTTCTAATATGGCAT 58.591 33.333 4.88 4.88 32.51 4.40
2327 2481 7.500720 TTCACATGTTCTAATATGGCATCAG 57.499 36.000 1.65 0.00 32.51 2.90
2358 2512 2.908688 ACAAATTTCAACTGGTGGCC 57.091 45.000 0.00 0.00 0.00 5.36
2422 2576 4.489679 ACGCAAATTCCTCTTTGAACTC 57.510 40.909 0.97 0.00 38.17 3.01
2471 2625 7.313740 AGATCATATCTGCTAACCTGTGATT 57.686 36.000 0.00 0.00 38.44 2.57
2501 2655 9.695526 TTTAAGAATTCAGAAATGACCATTGTG 57.304 29.630 8.44 0.00 0.00 3.33
2720 2874 3.618150 GGGAAATGGCAAATGAATGTTCG 59.382 43.478 0.00 0.00 0.00 3.95
2731 2885 6.183359 GCAAATGAATGTTCGCTTCAGTTTAG 60.183 38.462 0.00 0.00 38.45 1.85
2737 2891 4.320023 TGTTCGCTTCAGTTTAGGCATAA 58.680 39.130 0.00 0.00 0.00 1.90
2825 2979 7.448748 AAACATAACCTCCATTCTTGTACAC 57.551 36.000 0.00 0.00 0.00 2.90
2835 2989 5.833667 TCCATTCTTGTACACGAGGATATCT 59.166 40.000 6.32 0.00 0.00 1.98
2868 3022 0.460311 GTAGGTGTCTGGACCGGATG 59.540 60.000 9.46 0.00 41.35 3.51
2940 3094 0.756294 TCGGTGGTGCTATGTATGGG 59.244 55.000 0.00 0.00 0.00 4.00
2942 3096 0.474184 GGTGGTGCTATGTATGGGCT 59.526 55.000 0.00 0.00 0.00 5.19
2997 3157 5.045869 GGCCCTATATGGTATACACACACAT 60.046 44.000 5.01 1.30 0.00 3.21
3035 3195 2.969628 ACCCATCGTCAGAACTCATC 57.030 50.000 0.00 0.00 0.00 2.92
3106 3312 7.151308 TGACCAATTTGTACCATGAAATTCAC 58.849 34.615 0.00 0.00 30.94 3.18
3141 3347 8.635765 ACATCCAACACTAAGTGAACATTTAT 57.364 30.769 0.00 0.00 36.96 1.40
3176 3382 6.418057 AAACCTGCAAAATTCCAGTATTCA 57.582 33.333 0.00 0.00 0.00 2.57
3185 3391 6.418057 AAATTCCAGTATTCAAAACAGGCA 57.582 33.333 0.00 0.00 0.00 4.75
3215 3421 7.886629 TTATTTTATTGAGGCTGAGCAATCT 57.113 32.000 6.82 0.00 36.27 2.40
3393 3600 5.304686 TGAAGCCTTTTCAGAGGTAAAGA 57.695 39.130 0.00 0.00 39.11 2.52
3477 3684 1.826385 AGCTATGCACACTGTTTCCC 58.174 50.000 0.00 0.00 0.00 3.97
3504 3711 5.627499 AAGCATATATTGTGCATAACCCG 57.373 39.130 13.28 0.00 44.87 5.28
3542 3749 7.776500 TGGAATTACCAAAGGGCTTAATAGTAC 59.224 37.037 0.00 0.00 46.75 2.73
3605 3818 2.770164 ACTGTAAAGGCACTAGCTGG 57.230 50.000 0.00 0.00 38.49 4.85
3647 3860 8.754991 TTCACTTCCTACATTTACCAAAGAAA 57.245 30.769 0.00 0.00 0.00 2.52
3662 3875 4.872124 CCAAAGAAAAGCAAGCTTTGAACT 59.128 37.500 19.59 15.53 46.98 3.01
3695 3908 5.136816 TGCATGTGATAAACAACAATGCT 57.863 34.783 6.33 0.00 43.61 3.79
3869 4082 4.552355 TCTGTGGTTTGTATACGTGTCAG 58.448 43.478 0.00 3.02 0.00 3.51
3898 4111 5.262804 CCTAGTAGTAAGTGTGGGAGACTT 58.737 45.833 0.00 0.00 37.43 3.01
3937 4150 2.030185 GGAGTAACTGCTGACTGTCGAA 60.030 50.000 2.98 0.00 0.00 3.71
3983 4196 6.431234 AGAACTTGGATCACAATGTTAAGTCC 59.569 38.462 0.00 0.00 38.65 3.85
3993 4206 6.207221 TCACAATGTTAAGTCCAGAGTACGTA 59.793 38.462 0.00 0.00 0.00 3.57
4007 4220 4.894114 AGAGTACGTATAACTGGCCAGATT 59.106 41.667 39.19 27.84 0.00 2.40
4097 7591 3.758554 CTGATTGTTTGTAGGTTGGAGGG 59.241 47.826 0.00 0.00 0.00 4.30
4133 7635 2.820037 GCTTGGGACCTACGCTGC 60.820 66.667 0.00 0.00 0.00 5.25
4229 7731 5.701224 TGGGAGGTTCTTTTTGACAACTAT 58.299 37.500 0.00 0.00 0.00 2.12
4362 7864 6.303970 CAGAAAGCGTTGAATTAATGTGTCTG 59.696 38.462 0.00 0.00 0.00 3.51
4406 7910 9.232082 GCAAATTGCTTACGATATGACAATTTA 57.768 29.630 11.19 0.00 42.60 1.40
4561 8072 8.784043 TCTTGTACTTGCTTTAATTTTCTCCTC 58.216 33.333 0.00 0.00 0.00 3.71
4823 8341 2.159572 GCTCGGCGTGTATTTCATTTGT 60.160 45.455 6.85 0.00 0.00 2.83
4824 8342 3.669557 GCTCGGCGTGTATTTCATTTGTT 60.670 43.478 6.85 0.00 0.00 2.83
4833 8351 7.116186 CGTGTATTTCATTTGTTGTTTTGTGG 58.884 34.615 0.00 0.00 0.00 4.17
4842 8407 5.931441 TTGTTGTTTTGTGGGAAACTTTG 57.069 34.783 2.68 0.00 39.62 2.77
4877 8448 2.662637 CGCGGATCGTGTAAAACTTACA 59.337 45.455 0.00 0.00 32.40 2.41
4930 8501 3.444742 CAGCATAGGTGAAATTGGAAGCA 59.555 43.478 0.00 0.00 32.22 3.91
4933 8504 5.533903 AGCATAGGTGAAATTGGAAGCATAG 59.466 40.000 0.00 0.00 0.00 2.23
4936 8507 3.698040 AGGTGAAATTGGAAGCATAGCTG 59.302 43.478 0.00 0.00 39.62 4.24
4938 8509 4.418392 GTGAAATTGGAAGCATAGCTGTG 58.582 43.478 6.03 6.03 39.62 3.66
4940 8511 4.766373 TGAAATTGGAAGCATAGCTGTGAA 59.234 37.500 15.47 0.00 39.62 3.18
4943 8514 7.122501 TGAAATTGGAAGCATAGCTGTGAATTA 59.877 33.333 15.47 0.00 39.62 1.40
4946 8517 4.877823 TGGAAGCATAGCTGTGAATTACTG 59.122 41.667 15.47 0.00 39.62 2.74
4948 8519 4.760530 AGCATAGCTGTGAATTACTGGA 57.239 40.909 15.47 0.00 37.57 3.86
4951 8522 5.071519 AGCATAGCTGTGAATTACTGGATCT 59.928 40.000 15.47 0.00 37.57 2.75
4952 8523 6.268617 AGCATAGCTGTGAATTACTGGATCTA 59.731 38.462 15.47 0.00 37.57 1.98
4953 8524 7.038445 AGCATAGCTGTGAATTACTGGATCTAT 60.038 37.037 15.47 0.00 37.57 1.98
4985 8671 3.790089 TTTTTGTTTTGGTTGGGGTGT 57.210 38.095 0.00 0.00 0.00 4.16
5022 8708 3.335534 GCAACGCTTGGACGACGT 61.336 61.111 0.00 0.00 42.81 4.34
5168 8857 1.134371 AGGCCGAGAAAGGTATGCTTC 60.134 52.381 0.00 0.00 0.00 3.86
5172 8861 3.552273 GCCGAGAAAGGTATGCTTCGATA 60.552 47.826 0.00 0.00 0.00 2.92
5175 8864 3.991121 GAGAAAGGTATGCTTCGATAGGC 59.009 47.826 0.00 0.00 0.00 3.93
5181 8870 2.029221 GCTTCGATAGGCGTCCCC 59.971 66.667 0.00 0.00 41.80 4.81
5249 11965 4.657814 AGCGGTATGGGATTATTCCAAT 57.342 40.909 0.00 2.65 44.60 3.16
5254 11970 6.003950 CGGTATGGGATTATTCCAATGAGTT 58.996 40.000 0.00 0.00 44.60 3.01
5272 11988 5.479306 TGAGTTCGAAGCTGCTACTTATTT 58.521 37.500 0.90 0.00 0.00 1.40
5274 11990 4.631813 AGTTCGAAGCTGCTACTTATTTGG 59.368 41.667 0.90 0.00 0.00 3.28
5275 11991 3.531538 TCGAAGCTGCTACTTATTTGGG 58.468 45.455 0.90 0.00 0.00 4.12
5305 12028 4.390909 AGCCGACTCTTATTTTACGTTTGG 59.609 41.667 0.00 0.00 0.00 3.28
5309 12032 3.120095 ACTCTTATTTTACGTTTGGCGGC 60.120 43.478 0.00 0.00 46.52 6.53
5335 12059 0.685097 CTCGTCCAACCAGGGAAGAA 59.315 55.000 0.00 0.00 43.35 2.52
5370 12094 4.488136 CGGCCCACATGCTGCCTA 62.488 66.667 16.05 0.00 43.12 3.93
5371 12095 2.196776 GGCCCACATGCTGCCTAT 59.803 61.111 12.20 0.00 42.01 2.57
5372 12096 1.900498 GGCCCACATGCTGCCTATC 60.900 63.158 12.20 0.00 42.01 2.08
5373 12097 1.150081 GCCCACATGCTGCCTATCT 59.850 57.895 0.00 0.00 0.00 1.98
5374 12098 1.170919 GCCCACATGCTGCCTATCTG 61.171 60.000 0.00 0.00 0.00 2.90
5375 12099 0.536687 CCCACATGCTGCCTATCTGG 60.537 60.000 0.00 0.00 39.35 3.86
5384 12108 2.739784 CCTATCTGGCGCCTCAGG 59.260 66.667 29.70 22.50 35.58 3.86
5385 12109 2.030262 CTATCTGGCGCCTCAGGC 59.970 66.667 29.70 5.22 46.75 4.85
5395 12119 3.882131 GCCTCAGGCTCCAAATACA 57.118 52.632 9.09 0.00 46.69 2.29
5396 12120 1.673168 GCCTCAGGCTCCAAATACAG 58.327 55.000 9.09 0.00 46.69 2.74
5397 12121 1.210478 GCCTCAGGCTCCAAATACAGA 59.790 52.381 9.09 0.00 46.69 3.41
5398 12122 2.356125 GCCTCAGGCTCCAAATACAGAA 60.356 50.000 9.09 0.00 46.69 3.02
5399 12123 3.873801 GCCTCAGGCTCCAAATACAGAAA 60.874 47.826 9.09 0.00 46.69 2.52
5400 12124 4.335416 CCTCAGGCTCCAAATACAGAAAA 58.665 43.478 0.00 0.00 0.00 2.29
5401 12125 4.766891 CCTCAGGCTCCAAATACAGAAAAA 59.233 41.667 0.00 0.00 0.00 1.94
5418 12142 1.627864 AAAATGGTACCTGGTGCACC 58.372 50.000 29.67 29.67 0.00 5.01
5419 12143 0.251608 AAATGGTACCTGGTGCACCC 60.252 55.000 32.62 16.63 34.29 4.61
5420 12144 1.140134 AATGGTACCTGGTGCACCCT 61.140 55.000 32.62 17.25 34.29 4.34
5421 12145 1.562672 ATGGTACCTGGTGCACCCTC 61.563 60.000 32.62 16.92 34.29 4.30
5422 12146 2.264794 GTACCTGGTGCACCCTCG 59.735 66.667 32.62 21.03 34.29 4.63
5423 12147 3.702048 TACCTGGTGCACCCTCGC 61.702 66.667 32.62 8.33 34.29 5.03
5429 12153 4.996434 GTGCACCCTCGCTGCAGT 62.996 66.667 16.64 0.00 45.22 4.40
5430 12154 4.254709 TGCACCCTCGCTGCAGTT 62.255 61.111 16.64 0.00 39.76 3.16
5431 12155 3.426568 GCACCCTCGCTGCAGTTC 61.427 66.667 16.64 0.00 34.56 3.01
5432 12156 2.743928 CACCCTCGCTGCAGTTCC 60.744 66.667 16.64 0.00 0.00 3.62
5433 12157 2.925170 ACCCTCGCTGCAGTTCCT 60.925 61.111 16.64 0.00 0.00 3.36
5434 12158 2.348998 CCCTCGCTGCAGTTCCTT 59.651 61.111 16.64 0.00 0.00 3.36
5435 12159 1.743252 CCCTCGCTGCAGTTCCTTC 60.743 63.158 16.64 0.00 0.00 3.46
5436 12160 1.294780 CCTCGCTGCAGTTCCTTCT 59.705 57.895 16.64 0.00 0.00 2.85
5437 12161 0.321122 CCTCGCTGCAGTTCCTTCTT 60.321 55.000 16.64 0.00 0.00 2.52
5438 12162 1.066858 CCTCGCTGCAGTTCCTTCTTA 60.067 52.381 16.64 0.00 0.00 2.10
5439 12163 2.612972 CCTCGCTGCAGTTCCTTCTTAA 60.613 50.000 16.64 0.00 0.00 1.85
5440 12164 3.067106 CTCGCTGCAGTTCCTTCTTAAA 58.933 45.455 16.64 0.00 0.00 1.52
5441 12165 3.472652 TCGCTGCAGTTCCTTCTTAAAA 58.527 40.909 16.64 0.00 0.00 1.52
5442 12166 3.498397 TCGCTGCAGTTCCTTCTTAAAAG 59.502 43.478 16.64 0.00 0.00 2.27
5443 12167 3.365364 CGCTGCAGTTCCTTCTTAAAAGG 60.365 47.826 16.64 9.08 38.78 3.11
5444 12168 3.057245 GCTGCAGTTCCTTCTTAAAAGGG 60.057 47.826 16.64 0.00 37.99 3.95
5445 12169 2.890945 TGCAGTTCCTTCTTAAAAGGGC 59.109 45.455 13.24 10.25 37.99 5.19
5446 12170 2.890945 GCAGTTCCTTCTTAAAAGGGCA 59.109 45.455 13.24 2.79 37.99 5.36
5447 12171 3.057245 GCAGTTCCTTCTTAAAAGGGCAG 60.057 47.826 13.24 7.59 37.99 4.85
5448 12172 4.145052 CAGTTCCTTCTTAAAAGGGCAGT 58.855 43.478 13.24 4.86 37.99 4.40
5449 12173 4.216472 CAGTTCCTTCTTAAAAGGGCAGTC 59.784 45.833 13.24 4.39 37.99 3.51
5450 12174 3.434940 TCCTTCTTAAAAGGGCAGTCC 57.565 47.619 13.24 0.00 37.99 3.85
5451 12175 2.714250 TCCTTCTTAAAAGGGCAGTCCA 59.286 45.455 13.24 0.00 37.99 4.02
5452 12176 3.333680 TCCTTCTTAAAAGGGCAGTCCAT 59.666 43.478 13.24 0.00 37.99 3.41
5453 12177 4.538490 TCCTTCTTAAAAGGGCAGTCCATA 59.462 41.667 13.24 0.00 37.99 2.74
5454 12178 5.193728 TCCTTCTTAAAAGGGCAGTCCATAT 59.806 40.000 13.24 0.00 37.99 1.78
5455 12179 5.893824 CCTTCTTAAAAGGGCAGTCCATATT 59.106 40.000 0.00 0.00 38.24 1.28
5456 12180 7.060421 CCTTCTTAAAAGGGCAGTCCATATTA 58.940 38.462 0.00 0.00 38.24 0.98
5457 12181 7.725844 CCTTCTTAAAAGGGCAGTCCATATTAT 59.274 37.037 0.00 0.00 38.24 1.28
5458 12182 9.793259 CTTCTTAAAAGGGCAGTCCATATTATA 57.207 33.333 0.00 0.00 38.24 0.98
5459 12183 9.793259 TTCTTAAAAGGGCAGTCCATATTATAG 57.207 33.333 0.00 0.00 38.24 1.31
5460 12184 8.383175 TCTTAAAAGGGCAGTCCATATTATAGG 58.617 37.037 0.00 0.00 38.24 2.57
5461 12185 5.520748 AAAGGGCAGTCCATATTATAGGG 57.479 43.478 0.00 0.00 38.24 3.53
5462 12186 4.435977 AGGGCAGTCCATATTATAGGGA 57.564 45.455 1.03 1.03 36.08 4.20
5463 12187 4.366267 AGGGCAGTCCATATTATAGGGAG 58.634 47.826 5.81 0.00 39.64 4.30
5464 12188 4.047265 AGGGCAGTCCATATTATAGGGAGA 59.953 45.833 5.81 0.00 39.64 3.71
5465 12189 4.783227 GGGCAGTCCATATTATAGGGAGAA 59.217 45.833 5.81 0.00 39.64 2.87
5466 12190 5.250774 GGGCAGTCCATATTATAGGGAGAAA 59.749 44.000 5.81 0.00 39.64 2.52
5467 12191 6.240176 GGGCAGTCCATATTATAGGGAGAAAA 60.240 42.308 5.81 0.00 39.64 2.29
5468 12192 7.231467 GGCAGTCCATATTATAGGGAGAAAAA 58.769 38.462 5.81 0.00 39.64 1.94
5486 12210 4.404185 AAAAAGAAGCCCCAGGTTATCT 57.596 40.909 0.00 0.00 32.71 1.98
5487 12211 3.372440 AAAGAAGCCCCAGGTTATCTG 57.628 47.619 0.00 0.00 43.00 2.90
5499 12223 5.567138 CAGGTTATCTGGTTTTAGCCTTG 57.433 43.478 0.00 0.00 39.76 3.61
5500 12224 5.010282 CAGGTTATCTGGTTTTAGCCTTGT 58.990 41.667 0.00 0.00 39.76 3.16
5501 12225 5.476945 CAGGTTATCTGGTTTTAGCCTTGTT 59.523 40.000 0.00 0.00 39.76 2.83
5502 12226 6.015434 CAGGTTATCTGGTTTTAGCCTTGTTT 60.015 38.462 0.00 0.00 39.76 2.83
5503 12227 6.553476 AGGTTATCTGGTTTTAGCCTTGTTTT 59.447 34.615 0.00 0.00 0.00 2.43
5504 12228 7.070696 AGGTTATCTGGTTTTAGCCTTGTTTTT 59.929 33.333 0.00 0.00 0.00 1.94
5505 12229 8.361889 GGTTATCTGGTTTTAGCCTTGTTTTTA 58.638 33.333 0.00 0.00 0.00 1.52
5506 12230 9.188588 GTTATCTGGTTTTAGCCTTGTTTTTAC 57.811 33.333 0.00 0.00 0.00 2.01
5507 12231 7.597288 ATCTGGTTTTAGCCTTGTTTTTACT 57.403 32.000 0.00 0.00 0.00 2.24
5508 12232 7.412853 TCTGGTTTTAGCCTTGTTTTTACTT 57.587 32.000 0.00 0.00 0.00 2.24
5509 12233 7.842982 TCTGGTTTTAGCCTTGTTTTTACTTT 58.157 30.769 0.00 0.00 0.00 2.66
5510 12234 8.315482 TCTGGTTTTAGCCTTGTTTTTACTTTT 58.685 29.630 0.00 0.00 0.00 2.27
5511 12235 8.481974 TGGTTTTAGCCTTGTTTTTACTTTTC 57.518 30.769 0.00 0.00 0.00 2.29
5512 12236 8.315482 TGGTTTTAGCCTTGTTTTTACTTTTCT 58.685 29.630 0.00 0.00 0.00 2.52
5513 12237 8.814235 GGTTTTAGCCTTGTTTTTACTTTTCTC 58.186 33.333 0.00 0.00 0.00 2.87
5514 12238 8.814235 GTTTTAGCCTTGTTTTTACTTTTCTCC 58.186 33.333 0.00 0.00 0.00 3.71
5515 12239 5.183014 AGCCTTGTTTTTACTTTTCTCCG 57.817 39.130 0.00 0.00 0.00 4.63
5516 12240 4.643334 AGCCTTGTTTTTACTTTTCTCCGT 59.357 37.500 0.00 0.00 0.00 4.69
5517 12241 5.126545 AGCCTTGTTTTTACTTTTCTCCGTT 59.873 36.000 0.00 0.00 0.00 4.44
5518 12242 5.808540 GCCTTGTTTTTACTTTTCTCCGTTT 59.191 36.000 0.00 0.00 0.00 3.60
5519 12243 6.311935 GCCTTGTTTTTACTTTTCTCCGTTTT 59.688 34.615 0.00 0.00 0.00 2.43
5520 12244 7.463648 GCCTTGTTTTTACTTTTCTCCGTTTTC 60.464 37.037 0.00 0.00 0.00 2.29
5521 12245 7.253519 CCTTGTTTTTACTTTTCTCCGTTTTCG 60.254 37.037 0.00 0.00 43.67 3.46
5522 12246 6.610456 TGTTTTTACTTTTCTCCGTTTTCGT 58.390 32.000 0.00 0.00 42.35 3.85
5523 12247 7.083230 TGTTTTTACTTTTCTCCGTTTTCGTT 58.917 30.769 0.00 0.00 42.35 3.85
5524 12248 7.594386 TGTTTTTACTTTTCTCCGTTTTCGTTT 59.406 29.630 0.00 0.00 42.35 3.60
5525 12249 8.427012 GTTTTTACTTTTCTCCGTTTTCGTTTT 58.573 29.630 0.00 0.00 42.35 2.43
5526 12250 7.495339 TTTACTTTTCTCCGTTTTCGTTTTG 57.505 32.000 0.00 0.00 42.35 2.44
5527 12251 3.855379 ACTTTTCTCCGTTTTCGTTTTGC 59.145 39.130 0.00 0.00 42.35 3.68
5528 12252 3.768468 TTTCTCCGTTTTCGTTTTGCT 57.232 38.095 0.00 0.00 42.35 3.91
5529 12253 3.768468 TTCTCCGTTTTCGTTTTGCTT 57.232 38.095 0.00 0.00 42.35 3.91
5530 12254 3.768468 TCTCCGTTTTCGTTTTGCTTT 57.232 38.095 0.00 0.00 42.35 3.51
5531 12255 4.879104 TCTCCGTTTTCGTTTTGCTTTA 57.121 36.364 0.00 0.00 42.35 1.85
5532 12256 4.590226 TCTCCGTTTTCGTTTTGCTTTAC 58.410 39.130 0.00 0.00 42.35 2.01
5533 12257 4.333372 TCTCCGTTTTCGTTTTGCTTTACT 59.667 37.500 0.00 0.00 42.35 2.24
5534 12258 4.984205 TCCGTTTTCGTTTTGCTTTACTT 58.016 34.783 0.00 0.00 42.35 2.24
5535 12259 5.400703 TCCGTTTTCGTTTTGCTTTACTTT 58.599 33.333 0.00 0.00 42.35 2.66
5536 12260 5.512434 TCCGTTTTCGTTTTGCTTTACTTTC 59.488 36.000 0.00 0.00 42.35 2.62
5537 12261 5.513849 CCGTTTTCGTTTTGCTTTACTTTCT 59.486 36.000 0.00 0.00 42.35 2.52
5538 12262 6.290904 CCGTTTTCGTTTTGCTTTACTTTCTC 60.291 38.462 0.00 0.00 42.35 2.87
5539 12263 6.468000 CGTTTTCGTTTTGCTTTACTTTCTCT 59.532 34.615 0.00 0.00 38.65 3.10
5540 12264 7.304679 CGTTTTCGTTTTGCTTTACTTTCTCTC 60.305 37.037 0.00 0.00 38.65 3.20
5541 12265 6.920569 TTCGTTTTGCTTTACTTTCTCTCT 57.079 33.333 0.00 0.00 0.00 3.10
5542 12266 6.920569 TCGTTTTGCTTTACTTTCTCTCTT 57.079 33.333 0.00 0.00 0.00 2.85
5543 12267 7.316544 TCGTTTTGCTTTACTTTCTCTCTTT 57.683 32.000 0.00 0.00 0.00 2.52
5544 12268 7.758495 TCGTTTTGCTTTACTTTCTCTCTTTT 58.242 30.769 0.00 0.00 0.00 2.27
5545 12269 8.241367 TCGTTTTGCTTTACTTTCTCTCTTTTT 58.759 29.630 0.00 0.00 0.00 1.94
5578 12302 8.752005 TTTTCCTCTTCATTTCTTCTTTCTCA 57.248 30.769 0.00 0.00 0.00 3.27
5579 12303 8.752005 TTTCCTCTTCATTTCTTCTTTCTCAA 57.248 30.769 0.00 0.00 0.00 3.02
5580 12304 8.752005 TTCCTCTTCATTTCTTCTTTCTCAAA 57.248 30.769 0.00 0.00 0.00 2.69
5581 12305 8.930846 TCCTCTTCATTTCTTCTTTCTCAAAT 57.069 30.769 0.00 0.00 0.00 2.32
5582 12306 9.007901 TCCTCTTCATTTCTTCTTTCTCAAATC 57.992 33.333 0.00 0.00 0.00 2.17
5583 12307 8.242739 CCTCTTCATTTCTTCTTTCTCAAATCC 58.757 37.037 0.00 0.00 0.00 3.01
5584 12308 8.696043 TCTTCATTTCTTCTTTCTCAAATCCA 57.304 30.769 0.00 0.00 0.00 3.41
5585 12309 9.305555 TCTTCATTTCTTCTTTCTCAAATCCAT 57.694 29.630 0.00 0.00 0.00 3.41
5586 12310 9.355215 CTTCATTTCTTCTTTCTCAAATCCATG 57.645 33.333 0.00 0.00 0.00 3.66
5587 12311 8.640063 TCATTTCTTCTTTCTCAAATCCATGA 57.360 30.769 0.00 0.00 0.00 3.07
5588 12312 9.081204 TCATTTCTTCTTTCTCAAATCCATGAA 57.919 29.630 0.00 0.00 0.00 2.57
5589 12313 9.136952 CATTTCTTCTTTCTCAAATCCATGAAC 57.863 33.333 0.00 0.00 0.00 3.18
5590 12314 8.469309 TTTCTTCTTTCTCAAATCCATGAACT 57.531 30.769 0.00 0.00 0.00 3.01
5591 12315 8.469309 TTCTTCTTTCTCAAATCCATGAACTT 57.531 30.769 0.00 0.00 0.00 2.66
5592 12316 8.469309 TCTTCTTTCTCAAATCCATGAACTTT 57.531 30.769 0.00 0.00 0.00 2.66
5593 12317 8.917088 TCTTCTTTCTCAAATCCATGAACTTTT 58.083 29.630 0.00 0.00 0.00 2.27
5594 12318 9.538508 CTTCTTTCTCAAATCCATGAACTTTTT 57.461 29.630 0.00 0.00 0.00 1.94
5629 12353 9.701355 ATTCAAAAACTCTTTTACAAATTTGCG 57.299 25.926 18.12 2.41 32.85 4.85
5630 12354 8.467402 TCAAAAACTCTTTTACAAATTTGCGA 57.533 26.923 18.12 3.68 32.85 5.10
5631 12355 9.092876 TCAAAAACTCTTTTACAAATTTGCGAT 57.907 25.926 18.12 1.54 32.85 4.58
5632 12356 9.701355 CAAAAACTCTTTTACAAATTTGCGATT 57.299 25.926 18.12 1.16 32.85 3.34
5636 12360 9.914923 AACTCTTTTACAAATTTGCGATTTTTC 57.085 25.926 18.12 0.00 0.00 2.29
5637 12361 9.313118 ACTCTTTTACAAATTTGCGATTTTTCT 57.687 25.926 18.12 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.937814 TGGTTCTCAATGTTATCAGCGT 58.062 40.909 0.00 0.00 0.00 5.07
100 101 3.899726 AGTATGGAGTGGTAGACGTCAT 58.100 45.455 19.50 5.54 0.00 3.06
185 186 1.843851 TGGAGGATACCGGCTTCAAAT 59.156 47.619 0.00 0.00 37.17 2.32
186 187 1.065709 GTGGAGGATACCGGCTTCAAA 60.066 52.381 0.00 0.00 37.17 2.69
235 236 5.192927 TGATATCCTTTGCGTCCAAGAAAT 58.807 37.500 0.00 0.00 31.52 2.17
302 303 2.589720 TGAACGTAGGGTCTCTGACAA 58.410 47.619 1.64 0.00 33.68 3.18
339 340 2.346597 GCTAGCCGAGCCTATGAGT 58.653 57.895 2.29 0.00 46.41 3.41
371 372 1.419374 GCATTTGACTCGACGAGTGT 58.581 50.000 33.68 12.56 43.53 3.55
684 685 0.035820 TCAACATAGCCGGTCCCAAC 60.036 55.000 1.90 0.00 0.00 3.77
765 766 7.999679 TCTCTTTTGCATCTCTTTCTCAAAAA 58.000 30.769 0.00 0.00 36.56 1.94
766 767 7.500227 TCTCTCTTTTGCATCTCTTTCTCAAAA 59.500 33.333 0.00 0.00 35.92 2.44
767 768 6.994496 TCTCTCTTTTGCATCTCTTTCTCAAA 59.006 34.615 0.00 0.00 0.00 2.69
768 769 6.528321 TCTCTCTTTTGCATCTCTTTCTCAA 58.472 36.000 0.00 0.00 0.00 3.02
769 770 6.106648 TCTCTCTTTTGCATCTCTTTCTCA 57.893 37.500 0.00 0.00 0.00 3.27
770 771 7.439056 CCTATCTCTCTTTTGCATCTCTTTCTC 59.561 40.741 0.00 0.00 0.00 2.87
802 869 2.187599 CTGCACTGCACGGCCTTTAC 62.188 60.000 0.00 0.00 33.79 2.01
839 906 2.808206 GGGCTGTCGTCTATGGGGG 61.808 68.421 0.00 0.00 0.00 5.40
875 942 2.272918 GACGGAGAGTGAAGAGGGCG 62.273 65.000 0.00 0.00 0.00 6.13
876 943 1.513622 GACGGAGAGTGAAGAGGGC 59.486 63.158 0.00 0.00 0.00 5.19
877 944 1.803943 CGACGGAGAGTGAAGAGGG 59.196 63.158 0.00 0.00 0.00 4.30
878 945 1.137825 GCGACGGAGAGTGAAGAGG 59.862 63.158 0.00 0.00 0.00 3.69
879 946 1.137825 GGCGACGGAGAGTGAAGAG 59.862 63.158 0.00 0.00 0.00 2.85
880 947 3.275088 GGCGACGGAGAGTGAAGA 58.725 61.111 0.00 0.00 0.00 2.87
971 1044 2.283894 GCTTGGAGGGTTTGGGGG 60.284 66.667 0.00 0.00 0.00 5.40
1044 1117 2.805353 CAGCGGACGAGGTCAACG 60.805 66.667 0.00 0.00 33.68 4.10
1045 1118 2.432628 CCAGCGGACGAGGTCAAC 60.433 66.667 0.00 0.00 33.68 3.18
1572 1645 3.052082 CACCAGACGCCCTTGCAG 61.052 66.667 0.00 0.00 37.32 4.41
1593 1666 0.752743 AACCACAAGCAGCAGCAGAA 60.753 50.000 3.17 0.00 45.49 3.02
1594 1667 1.152902 AACCACAAGCAGCAGCAGA 60.153 52.632 3.17 0.00 45.49 4.26
1597 1682 0.109412 GATCAACCACAAGCAGCAGC 60.109 55.000 0.00 0.00 42.56 5.25
1630 1715 1.238625 GGAACAATCGGCGGAAACCA 61.239 55.000 7.21 0.00 0.00 3.67
1649 1754 6.039941 AGTGAAGTATAGATCCCTGAACTTCG 59.960 42.308 14.27 0.00 42.36 3.79
1687 1792 3.675613 TCCAACCATACCATACCCAGAT 58.324 45.455 0.00 0.00 0.00 2.90
1692 1797 3.876309 ACCATCCAACCATACCATACC 57.124 47.619 0.00 0.00 0.00 2.73
1693 1798 7.286775 ACAATTTACCATCCAACCATACCATAC 59.713 37.037 0.00 0.00 0.00 2.39
1694 1799 7.358263 ACAATTTACCATCCAACCATACCATA 58.642 34.615 0.00 0.00 0.00 2.74
1695 1800 6.201591 ACAATTTACCATCCAACCATACCAT 58.798 36.000 0.00 0.00 0.00 3.55
1708 1813 5.382664 ACGGAGGGAATACAATTTACCAT 57.617 39.130 0.00 0.00 31.32 3.55
1712 1817 6.302535 TCTGAACGGAGGGAATACAATTTA 57.697 37.500 0.00 0.00 0.00 1.40
1718 1823 5.915175 ACTAAATCTGAACGGAGGGAATAC 58.085 41.667 0.00 0.00 0.00 1.89
1722 1827 2.426024 CGACTAAATCTGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
1723 1828 2.165845 ACGACTAAATCTGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
1724 1829 3.436496 GACGACTAAATCTGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
1725 1830 3.099362 CGACGACTAAATCTGAACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
1726 1831 2.485426 ACGACGACTAAATCTGAACGGA 59.515 45.455 0.00 0.00 0.00 4.69
1727 1832 2.592897 CACGACGACTAAATCTGAACGG 59.407 50.000 0.00 0.00 0.00 4.44
1728 1833 2.592897 CCACGACGACTAAATCTGAACG 59.407 50.000 0.00 0.00 0.00 3.95
1729 1834 3.572584 ACCACGACGACTAAATCTGAAC 58.427 45.455 0.00 0.00 0.00 3.18
1730 1835 3.928727 ACCACGACGACTAAATCTGAA 57.071 42.857 0.00 0.00 0.00 3.02
1731 1836 3.928727 AACCACGACGACTAAATCTGA 57.071 42.857 0.00 0.00 0.00 3.27
1732 1837 4.985044 AAAACCACGACGACTAAATCTG 57.015 40.909 0.00 0.00 0.00 2.90
1733 1838 5.776744 ACTAAAACCACGACGACTAAATCT 58.223 37.500 0.00 0.00 0.00 2.40
1734 1839 6.144402 TGAACTAAAACCACGACGACTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
1735 1840 5.984926 TGAACTAAAACCACGACGACTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
1736 1841 5.347342 TGAACTAAAACCACGACGACTAAA 58.653 37.500 0.00 0.00 0.00 1.85
1737 1842 4.930963 TGAACTAAAACCACGACGACTAA 58.069 39.130 0.00 0.00 0.00 2.24
1738 1843 4.566545 TGAACTAAAACCACGACGACTA 57.433 40.909 0.00 0.00 0.00 2.59
1739 1844 3.441496 TGAACTAAAACCACGACGACT 57.559 42.857 0.00 0.00 0.00 4.18
1740 1845 4.720530 ATTGAACTAAAACCACGACGAC 57.279 40.909 0.00 0.00 0.00 4.34
1741 1846 4.809958 TCAATTGAACTAAAACCACGACGA 59.190 37.500 5.45 0.00 0.00 4.20
1742 1847 5.085636 TCAATTGAACTAAAACCACGACG 57.914 39.130 5.45 0.00 0.00 5.12
1756 1861 6.853720 TCGTTGTGGTTTTAGTTCAATTGAA 58.146 32.000 16.91 16.91 0.00 2.69
1757 1862 6.094325 ACTCGTTGTGGTTTTAGTTCAATTGA 59.906 34.615 3.38 3.38 0.00 2.57
1758 1863 6.262601 ACTCGTTGTGGTTTTAGTTCAATTG 58.737 36.000 0.00 0.00 0.00 2.32
1759 1864 6.445357 ACTCGTTGTGGTTTTAGTTCAATT 57.555 33.333 0.00 0.00 0.00 2.32
1760 1865 7.556733 TTACTCGTTGTGGTTTTAGTTCAAT 57.443 32.000 0.00 0.00 0.00 2.57
1761 1866 6.981762 TTACTCGTTGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
1762 1867 6.981762 TTTACTCGTTGTGGTTTTAGTTCA 57.018 33.333 0.00 0.00 0.00 3.18
1763 1868 6.788930 CGATTTACTCGTTGTGGTTTTAGTTC 59.211 38.462 0.00 0.00 42.56 3.01
1764 1869 6.293027 CCGATTTACTCGTTGTGGTTTTAGTT 60.293 38.462 0.00 0.00 46.18 2.24
1765 1870 5.178067 CCGATTTACTCGTTGTGGTTTTAGT 59.822 40.000 0.00 0.00 46.18 2.24
1766 1871 5.406175 TCCGATTTACTCGTTGTGGTTTTAG 59.594 40.000 0.00 0.00 46.18 1.85
1767 1872 5.295950 TCCGATTTACTCGTTGTGGTTTTA 58.704 37.500 0.00 0.00 46.18 1.52
1768 1873 4.128643 TCCGATTTACTCGTTGTGGTTTT 58.871 39.130 0.00 0.00 46.18 2.43
1769 1874 3.731089 TCCGATTTACTCGTTGTGGTTT 58.269 40.909 0.00 0.00 46.18 3.27
1770 1875 3.389925 TCCGATTTACTCGTTGTGGTT 57.610 42.857 0.00 0.00 46.18 3.67
1771 1876 3.062042 GTTCCGATTTACTCGTTGTGGT 58.938 45.455 0.00 0.00 46.18 4.16
1772 1877 2.091588 CGTTCCGATTTACTCGTTGTGG 59.908 50.000 0.00 0.00 46.18 4.17
1773 1878 2.091588 CCGTTCCGATTTACTCGTTGTG 59.908 50.000 0.00 0.00 46.18 3.33
1774 1879 2.030007 TCCGTTCCGATTTACTCGTTGT 60.030 45.455 0.00 0.00 46.18 3.32
1775 1880 2.597305 CTCCGTTCCGATTTACTCGTTG 59.403 50.000 0.00 0.00 46.18 4.10
1776 1881 2.416431 CCTCCGTTCCGATTTACTCGTT 60.416 50.000 0.00 0.00 46.18 3.85
1777 1882 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
1779 1884 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
1780 1885 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
1781 1886 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
1782 1887 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
1783 1888 1.856629 TACTCCCTCCGTTCCGATTT 58.143 50.000 0.00 0.00 0.00 2.17
1784 1889 1.962100 GATACTCCCTCCGTTCCGATT 59.038 52.381 0.00 0.00 0.00 3.34
1785 1890 1.145325 AGATACTCCCTCCGTTCCGAT 59.855 52.381 0.00 0.00 0.00 4.18
1786 1891 0.549950 AGATACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
1787 1892 0.953003 GAGATACTCCCTCCGTTCCG 59.047 60.000 0.00 0.00 0.00 4.30
1788 1893 1.957877 CTGAGATACTCCCTCCGTTCC 59.042 57.143 0.00 0.00 0.00 3.62
1789 1894 2.359531 CACTGAGATACTCCCTCCGTTC 59.640 54.545 0.00 0.00 0.00 3.95
1790 1895 2.379972 CACTGAGATACTCCCTCCGTT 58.620 52.381 0.00 0.00 0.00 4.44
1791 1896 1.410365 CCACTGAGATACTCCCTCCGT 60.410 57.143 0.00 0.00 0.00 4.69
1792 1897 1.323412 CCACTGAGATACTCCCTCCG 58.677 60.000 0.00 0.00 0.00 4.63
1793 1898 1.044611 GCCACTGAGATACTCCCTCC 58.955 60.000 0.00 0.00 0.00 4.30
1794 1899 2.080654 AGCCACTGAGATACTCCCTC 57.919 55.000 0.00 0.00 0.00 4.30
1795 1900 3.505386 CATAGCCACTGAGATACTCCCT 58.495 50.000 0.00 0.00 0.00 4.20
1796 1901 2.028567 GCATAGCCACTGAGATACTCCC 60.029 54.545 0.00 0.00 0.00 4.30
1797 1902 2.630098 TGCATAGCCACTGAGATACTCC 59.370 50.000 0.00 0.00 0.00 3.85
1798 1903 4.533919 ATGCATAGCCACTGAGATACTC 57.466 45.455 0.00 0.00 0.00 2.59
1799 1904 4.346127 TCAATGCATAGCCACTGAGATACT 59.654 41.667 0.00 0.00 0.00 2.12
1800 1905 4.450419 GTCAATGCATAGCCACTGAGATAC 59.550 45.833 0.00 0.00 0.00 2.24
1801 1906 4.101430 TGTCAATGCATAGCCACTGAGATA 59.899 41.667 0.00 0.00 0.00 1.98
1802 1907 3.118149 TGTCAATGCATAGCCACTGAGAT 60.118 43.478 0.00 0.00 0.00 2.75
1803 1908 2.236893 TGTCAATGCATAGCCACTGAGA 59.763 45.455 0.00 0.00 0.00 3.27
1813 1918 3.932822 AGTAACCGTGTGTCAATGCATA 58.067 40.909 0.00 0.00 0.00 3.14
1823 1928 5.996219 TGATTGAAATGAAGTAACCGTGTG 58.004 37.500 0.00 0.00 0.00 3.82
1880 1985 9.716531 AAACACATAGAGTAAACCTTACCTTAC 57.283 33.333 0.00 0.00 0.00 2.34
1885 1990 8.374327 ACACAAACACATAGAGTAAACCTTAC 57.626 34.615 0.00 0.00 0.00 2.34
1886 1991 8.967664 AACACAAACACATAGAGTAAACCTTA 57.032 30.769 0.00 0.00 0.00 2.69
1887 1992 7.875327 AACACAAACACATAGAGTAAACCTT 57.125 32.000 0.00 0.00 0.00 3.50
1888 1993 8.999431 CATAACACAAACACATAGAGTAAACCT 58.001 33.333 0.00 0.00 0.00 3.50
1889 1994 8.234546 CCATAACACAAACACATAGAGTAAACC 58.765 37.037 0.00 0.00 0.00 3.27
1890 1995 8.780249 ACCATAACACAAACACATAGAGTAAAC 58.220 33.333 0.00 0.00 0.00 2.01
1891 1996 8.911918 ACCATAACACAAACACATAGAGTAAA 57.088 30.769 0.00 0.00 0.00 2.01
1892 1997 8.372459 AGACCATAACACAAACACATAGAGTAA 58.628 33.333 0.00 0.00 0.00 2.24
1893 1998 7.903145 AGACCATAACACAAACACATAGAGTA 58.097 34.615 0.00 0.00 0.00 2.59
1894 1999 6.769512 AGACCATAACACAAACACATAGAGT 58.230 36.000 0.00 0.00 0.00 3.24
1895 2000 6.873605 TGAGACCATAACACAAACACATAGAG 59.126 38.462 0.00 0.00 0.00 2.43
1896 2001 6.764379 TGAGACCATAACACAAACACATAGA 58.236 36.000 0.00 0.00 0.00 1.98
1906 2011 5.482163 TCTTGACATGAGACCATAACACA 57.518 39.130 0.00 0.00 0.00 3.72
1962 2097 5.779529 AAGATGGCCAAGCATTTACATAG 57.220 39.130 10.96 0.00 0.00 2.23
1978 2126 4.708421 CCAGAAATGGGCCATATAAGATGG 59.292 45.833 21.54 17.16 41.99 3.51
1979 2127 4.708421 CCCAGAAATGGGCCATATAAGATG 59.292 45.833 21.54 12.41 42.99 2.90
1980 2128 4.939255 CCCAGAAATGGGCCATATAAGAT 58.061 43.478 21.54 0.00 42.99 2.40
1981 2129 4.387026 CCCAGAAATGGGCCATATAAGA 57.613 45.455 21.54 0.00 42.99 2.10
1991 2139 3.339407 GCAATAGCCTCCCAGAAATGGG 61.339 54.545 7.01 7.01 42.06 4.00
1992 2140 1.959282 GCAATAGCCTCCCAGAAATGG 59.041 52.381 0.00 0.00 33.58 3.16
1993 2141 2.883386 GAGCAATAGCCTCCCAGAAATG 59.117 50.000 0.00 0.00 43.56 2.32
1994 2142 2.511218 TGAGCAATAGCCTCCCAGAAAT 59.489 45.455 0.00 0.00 43.56 2.17
1995 2143 1.915489 TGAGCAATAGCCTCCCAGAAA 59.085 47.619 0.00 0.00 43.56 2.52
1996 2144 1.583556 TGAGCAATAGCCTCCCAGAA 58.416 50.000 0.00 0.00 43.56 3.02
1997 2145 1.696336 GATGAGCAATAGCCTCCCAGA 59.304 52.381 0.00 0.00 43.56 3.86
1998 2146 1.419012 TGATGAGCAATAGCCTCCCAG 59.581 52.381 0.00 0.00 43.56 4.45
1999 2147 1.419012 CTGATGAGCAATAGCCTCCCA 59.581 52.381 0.00 0.00 43.56 4.37
2000 2148 1.419387 ACTGATGAGCAATAGCCTCCC 59.581 52.381 0.00 0.00 43.56 4.30
2079 2233 0.107993 GGCAGACATGACAGCAGCTA 60.108 55.000 13.76 0.00 33.09 3.32
2086 2240 4.284829 TCAAACATAGGCAGACATGACA 57.715 40.909 0.00 0.00 36.64 3.58
2141 2295 1.575419 ACCGGAACCAGCTAATACCA 58.425 50.000 9.46 0.00 0.00 3.25
2146 2300 5.680594 TTAATAGAACCGGAACCAGCTAA 57.319 39.130 9.46 0.00 0.00 3.09
2233 2387 0.111266 CACACAACTTGCGCGAGTAC 60.111 55.000 29.99 0.00 0.00 2.73
2247 2401 1.339055 GGCTACAGCTGAATCCACACA 60.339 52.381 23.35 0.00 41.70 3.72
2268 2422 2.162681 ACAACTATCTGTTTGCTGGGC 58.837 47.619 0.00 0.00 36.63 5.36
2280 2434 7.656137 TGAAAGAACCTTGACAGTACAACTATC 59.344 37.037 0.00 0.00 0.00 2.08
2291 2445 5.192927 AGAACATGTGAAAGAACCTTGACA 58.807 37.500 0.00 0.00 0.00 3.58
2358 2512 6.296365 TCGACAGTAGACTATATTGGTTCG 57.704 41.667 0.00 0.00 0.00 3.95
2422 2576 1.659601 CAGCTGATGTCGAGAAGCAAG 59.340 52.381 8.42 0.00 38.14 4.01
2494 2648 0.030504 TCACAGCGCAAACACAATGG 59.969 50.000 11.47 0.00 0.00 3.16
2501 2655 2.187351 TGAAGTTTCACAGCGCAAAC 57.813 45.000 11.47 11.71 33.42 2.93
2563 2717 6.800408 CACAAGTTCATCAAGTCAGCATAAAG 59.200 38.462 0.00 0.00 0.00 1.85
2825 2979 6.766944 ACCCATATACTACGAAGATATCCTCG 59.233 42.308 19.71 19.71 0.00 4.63
2835 2989 5.766670 CAGACACCTACCCATATACTACGAA 59.233 44.000 0.00 0.00 0.00 3.85
2840 2994 4.481072 GTCCAGACACCTACCCATATACT 58.519 47.826 0.00 0.00 0.00 2.12
2868 3022 1.402984 CGAGTCCTTGCAGGTACTCAC 60.403 57.143 19.25 3.43 39.94 3.51
2885 3039 2.069273 CTCTGGGTGTAAAGCAACGAG 58.931 52.381 0.00 0.00 41.29 4.18
2887 3041 0.517316 GCTCTGGGTGTAAAGCAACG 59.483 55.000 0.00 0.00 35.08 4.10
2940 3094 2.666994 GGTGTACGCAAGACTAAGAAGC 59.333 50.000 8.97 0.00 43.62 3.86
2942 3096 3.859627 GCAGGTGTACGCAAGACTAAGAA 60.860 47.826 8.97 0.00 43.62 2.52
3062 3222 8.744568 TTGGTCATATTGCTGTATATTGACAA 57.255 30.769 0.00 0.00 0.00 3.18
3094 3300 8.915057 ATGTTCTATCCTAGTGAATTTCATGG 57.085 34.615 1.78 6.13 0.00 3.66
3106 3312 7.923344 CACTTAGTGTTGGATGTTCTATCCTAG 59.077 40.741 3.88 0.00 38.95 3.02
3141 3347 1.707989 TGCAGGTTTTGGGGATAGACA 59.292 47.619 0.00 0.00 0.00 3.41
3176 3382 9.995003 TCAATAAAATAAATCAGTGCCTGTTTT 57.005 25.926 12.72 12.72 37.25 2.43
3185 3391 7.340232 TGCTCAGCCTCAATAAAATAAATCAGT 59.660 33.333 0.00 0.00 0.00 3.41
3194 3400 7.340232 ACATAAGATTGCTCAGCCTCAATAAAA 59.660 33.333 0.00 0.00 33.49 1.52
3393 3600 8.582437 CAAGGATATTGCAAAGATATTGGTCAT 58.418 33.333 1.71 0.00 0.00 3.06
3451 3658 2.564504 ACAGTGTGCATAGCTTCAGAGA 59.435 45.455 0.00 0.00 0.00 3.10
3504 3711 9.154847 CCTTTGGTAATTCCATTTCAATCTTTC 57.845 33.333 0.00 0.00 46.60 2.62
3542 3749 1.033746 CCAGCCCCTATGTTGCACAG 61.034 60.000 0.00 0.00 0.00 3.66
3647 3860 3.950395 AGAGTTCAGTTCAAAGCTTGCTT 59.050 39.130 0.00 1.55 0.00 3.91
3662 3875 7.487484 TGTTTATCACATGCAAAAAGAGTTCA 58.513 30.769 0.00 0.00 0.00 3.18
3695 3908 5.221382 GGTTGAGGTAAGTAACACTCACAGA 60.221 44.000 0.00 0.00 36.05 3.41
3869 4082 4.099113 CCCACACTTACTACTAGGCTTACC 59.901 50.000 0.00 0.00 0.00 2.85
3898 4111 0.974010 CCGTACCACTTCCTAGGCCA 60.974 60.000 5.01 0.00 0.00 5.36
3937 4150 1.471119 CAGCTCAATCACCTTGCCAT 58.529 50.000 0.00 0.00 34.66 4.40
3983 4196 3.630769 TCTGGCCAGTTATACGTACTCTG 59.369 47.826 31.58 6.94 0.00 3.35
3993 4206 5.354234 CGTTTCTAACAATCTGGCCAGTTAT 59.646 40.000 31.58 16.74 0.00 1.89
4007 4220 6.938030 ACACTCCCATTAATTCGTTTCTAACA 59.062 34.615 0.00 0.00 0.00 2.41
4065 7559 6.876257 ACCTACAAACAATCAGAGAATCAGAC 59.124 38.462 0.00 0.00 37.82 3.51
4097 7591 5.393461 CCAAGCAAATATTGTTCCTGAGGAC 60.393 44.000 0.00 0.00 0.00 3.85
4133 7635 2.039974 TGGTATTGGCTGCTGTGCG 61.040 57.895 0.00 0.00 0.00 5.34
4166 7668 2.397549 GGTTGTGCTGTTTCATCAAGC 58.602 47.619 0.00 0.00 0.00 4.01
4229 7731 8.678593 ACGAGATAATATCAGAAGACTGTGTA 57.321 34.615 2.84 0.00 43.81 2.90
4362 7864 7.512297 CAATTTGCATGGAATAAGTCAACAAC 58.488 34.615 0.00 0.00 0.00 3.32
4406 7910 1.767681 GAGGCCTCTCATCTGGTGATT 59.232 52.381 26.25 0.00 39.74 2.57
4561 8072 1.199327 ACAGACGACATCCTGTGTACG 59.801 52.381 0.00 0.00 42.36 3.67
4685 8203 1.308069 CGGGCCATCACAGGAACTTG 61.308 60.000 4.39 0.00 34.60 3.16
4688 8206 2.040544 CACGGGCCATCACAGGAAC 61.041 63.158 4.39 0.00 0.00 3.62
4716 8234 3.247006 TGCTTACCCTGATTTCTCGAC 57.753 47.619 0.00 0.00 0.00 4.20
4823 8341 5.368989 ACAACAAAGTTTCCCACAAAACAA 58.631 33.333 2.73 0.00 40.77 2.83
4824 8342 4.962155 ACAACAAAGTTTCCCACAAAACA 58.038 34.783 2.73 0.00 40.77 2.83
4833 8351 6.129194 GCGATTACAATGACAACAAAGTTTCC 60.129 38.462 0.00 0.00 0.00 3.13
4842 8407 3.601586 CGATCCGCGATTACAATGACAAC 60.602 47.826 8.23 0.00 44.57 3.32
4877 8448 0.826715 ACAGCTACGCATGATCCAGT 59.173 50.000 0.00 0.00 0.00 4.00
4923 8494 4.877823 CAGTAATTCACAGCTATGCTTCCA 59.122 41.667 0.00 0.00 36.40 3.53
4965 8536 3.412386 CACACCCCAACCAAAACAAAAA 58.588 40.909 0.00 0.00 0.00 1.94
5181 8870 4.003648 AGAGAGCAATAAAACCAGAACCG 58.996 43.478 0.00 0.00 0.00 4.44
5249 11965 4.720649 ATAAGTAGCAGCTTCGAACTCA 57.279 40.909 0.00 0.00 0.00 3.41
5254 11970 3.196901 TCCCAAATAAGTAGCAGCTTCGA 59.803 43.478 0.00 0.00 0.00 3.71
5335 12059 1.066143 CCGTCATCTACTTGTTGGGCT 60.066 52.381 0.00 0.00 0.00 5.19
5378 12102 3.634397 TTCTGTATTTGGAGCCTGAGG 57.366 47.619 0.00 0.00 0.00 3.86
5379 12103 5.964958 TTTTTCTGTATTTGGAGCCTGAG 57.035 39.130 0.00 0.00 0.00 3.35
5405 12129 2.264794 CGAGGGTGCACCAGGTAC 59.735 66.667 35.78 18.89 43.89 3.34
5406 12130 3.702048 GCGAGGGTGCACCAGGTA 61.702 66.667 35.78 0.00 43.89 3.08
5415 12139 2.738213 AAGGAACTGCAGCGAGGGTG 62.738 60.000 15.27 0.00 40.86 4.61
5416 12140 2.456287 GAAGGAACTGCAGCGAGGGT 62.456 60.000 15.27 0.00 40.86 4.34
5417 12141 1.743252 GAAGGAACTGCAGCGAGGG 60.743 63.158 15.27 0.00 40.86 4.30
5418 12142 0.321122 AAGAAGGAACTGCAGCGAGG 60.321 55.000 15.27 0.00 40.86 4.63
5419 12143 2.370281 TAAGAAGGAACTGCAGCGAG 57.630 50.000 15.27 0.00 40.86 5.03
5420 12144 2.831685 TTAAGAAGGAACTGCAGCGA 57.168 45.000 15.27 0.00 40.86 4.93
5421 12145 3.365364 CCTTTTAAGAAGGAACTGCAGCG 60.365 47.826 15.27 0.00 40.86 5.18
5422 12146 3.057245 CCCTTTTAAGAAGGAACTGCAGC 60.057 47.826 15.27 0.00 40.86 5.25
5423 12147 3.057245 GCCCTTTTAAGAAGGAACTGCAG 60.057 47.826 13.48 13.48 40.86 4.41
5424 12148 2.890945 GCCCTTTTAAGAAGGAACTGCA 59.109 45.455 14.42 0.00 40.86 4.41
5425 12149 2.890945 TGCCCTTTTAAGAAGGAACTGC 59.109 45.455 14.42 10.74 40.86 4.40
5426 12150 4.145052 ACTGCCCTTTTAAGAAGGAACTG 58.855 43.478 14.42 12.23 40.86 3.16
5427 12151 7.171695 TGGACTGCCCTTTTAAGAAGGAACT 62.172 44.000 14.42 0.00 39.81 3.01
5428 12152 3.506455 GGACTGCCCTTTTAAGAAGGAAC 59.494 47.826 14.42 8.90 39.81 3.62
5429 12153 3.139397 TGGACTGCCCTTTTAAGAAGGAA 59.861 43.478 14.42 5.44 39.81 3.36
5430 12154 2.714250 TGGACTGCCCTTTTAAGAAGGA 59.286 45.455 14.42 0.46 39.81 3.36
5431 12155 3.154827 TGGACTGCCCTTTTAAGAAGG 57.845 47.619 8.60 8.60 37.17 3.46
5432 12156 8.697507 ATAATATGGACTGCCCTTTTAAGAAG 57.302 34.615 0.00 0.00 35.38 2.85
5433 12157 9.793259 CTATAATATGGACTGCCCTTTTAAGAA 57.207 33.333 0.00 0.00 35.38 2.52
5434 12158 8.383175 CCTATAATATGGACTGCCCTTTTAAGA 58.617 37.037 0.00 0.00 35.38 2.10
5435 12159 7.611855 CCCTATAATATGGACTGCCCTTTTAAG 59.388 40.741 0.00 0.00 35.38 1.85
5436 12160 7.296150 TCCCTATAATATGGACTGCCCTTTTAA 59.704 37.037 0.00 0.00 35.38 1.52
5437 12161 6.795507 TCCCTATAATATGGACTGCCCTTTTA 59.204 38.462 0.00 0.00 35.38 1.52
5438 12162 5.615261 TCCCTATAATATGGACTGCCCTTTT 59.385 40.000 0.00 0.00 35.38 2.27
5439 12163 5.170198 TCCCTATAATATGGACTGCCCTTT 58.830 41.667 0.00 0.00 35.38 3.11
5440 12164 4.774779 TCCCTATAATATGGACTGCCCTT 58.225 43.478 0.00 0.00 35.38 3.95
5441 12165 4.047265 TCTCCCTATAATATGGACTGCCCT 59.953 45.833 0.00 0.00 35.38 5.19
5442 12166 4.362677 TCTCCCTATAATATGGACTGCCC 58.637 47.826 0.00 0.00 0.00 5.36
5443 12167 6.374417 TTTCTCCCTATAATATGGACTGCC 57.626 41.667 0.00 0.00 0.00 4.85
5465 12189 4.089361 CAGATAACCTGGGGCTTCTTTTT 58.911 43.478 0.00 0.00 39.23 1.94
5466 12190 3.701664 CAGATAACCTGGGGCTTCTTTT 58.298 45.455 0.00 0.00 39.23 2.27
5467 12191 3.372440 CAGATAACCTGGGGCTTCTTT 57.628 47.619 0.00 0.00 39.23 2.52
5477 12201 5.010282 ACAAGGCTAAAACCAGATAACCTG 58.990 41.667 0.00 0.00 42.55 4.00
5478 12202 5.256806 ACAAGGCTAAAACCAGATAACCT 57.743 39.130 0.00 0.00 0.00 3.50
5479 12203 5.977489 AACAAGGCTAAAACCAGATAACC 57.023 39.130 0.00 0.00 0.00 2.85
5480 12204 9.188588 GTAAAAACAAGGCTAAAACCAGATAAC 57.811 33.333 0.00 0.00 0.00 1.89
5481 12205 9.138596 AGTAAAAACAAGGCTAAAACCAGATAA 57.861 29.630 0.00 0.00 0.00 1.75
5482 12206 8.700439 AGTAAAAACAAGGCTAAAACCAGATA 57.300 30.769 0.00 0.00 0.00 1.98
5483 12207 7.597288 AGTAAAAACAAGGCTAAAACCAGAT 57.403 32.000 0.00 0.00 0.00 2.90
5484 12208 7.412853 AAGTAAAAACAAGGCTAAAACCAGA 57.587 32.000 0.00 0.00 0.00 3.86
5485 12209 8.487313 AAAAGTAAAAACAAGGCTAAAACCAG 57.513 30.769 0.00 0.00 0.00 4.00
5486 12210 8.315482 AGAAAAGTAAAAACAAGGCTAAAACCA 58.685 29.630 0.00 0.00 0.00 3.67
5487 12211 8.712285 AGAAAAGTAAAAACAAGGCTAAAACC 57.288 30.769 0.00 0.00 0.00 3.27
5488 12212 8.814235 GGAGAAAAGTAAAAACAAGGCTAAAAC 58.186 33.333 0.00 0.00 0.00 2.43
5489 12213 7.703197 CGGAGAAAAGTAAAAACAAGGCTAAAA 59.297 33.333 0.00 0.00 0.00 1.52
5490 12214 7.148035 ACGGAGAAAAGTAAAAACAAGGCTAAA 60.148 33.333 0.00 0.00 0.00 1.85
5491 12215 6.319405 ACGGAGAAAAGTAAAAACAAGGCTAA 59.681 34.615 0.00 0.00 0.00 3.09
5492 12216 5.824097 ACGGAGAAAAGTAAAAACAAGGCTA 59.176 36.000 0.00 0.00 0.00 3.93
5493 12217 4.643334 ACGGAGAAAAGTAAAAACAAGGCT 59.357 37.500 0.00 0.00 0.00 4.58
5494 12218 4.928601 ACGGAGAAAAGTAAAAACAAGGC 58.071 39.130 0.00 0.00 0.00 4.35
5495 12219 7.253519 CGAAAACGGAGAAAAGTAAAAACAAGG 60.254 37.037 0.00 0.00 0.00 3.61
5496 12220 7.271868 ACGAAAACGGAGAAAAGTAAAAACAAG 59.728 33.333 0.00 0.00 0.00 3.16
5497 12221 7.083230 ACGAAAACGGAGAAAAGTAAAAACAA 58.917 30.769 0.00 0.00 0.00 2.83
5498 12222 6.610456 ACGAAAACGGAGAAAAGTAAAAACA 58.390 32.000 0.00 0.00 0.00 2.83
5499 12223 7.496704 AACGAAAACGGAGAAAAGTAAAAAC 57.503 32.000 0.00 0.00 0.00 2.43
5500 12224 8.426251 CAAAACGAAAACGGAGAAAAGTAAAAA 58.574 29.630 0.00 0.00 0.00 1.94
5501 12225 7.410620 GCAAAACGAAAACGGAGAAAAGTAAAA 60.411 33.333 0.00 0.00 0.00 1.52
5502 12226 6.033725 GCAAAACGAAAACGGAGAAAAGTAAA 59.966 34.615 0.00 0.00 0.00 2.01
5503 12227 5.512434 GCAAAACGAAAACGGAGAAAAGTAA 59.488 36.000 0.00 0.00 0.00 2.24
5504 12228 5.029654 GCAAAACGAAAACGGAGAAAAGTA 58.970 37.500 0.00 0.00 0.00 2.24
5505 12229 3.855379 GCAAAACGAAAACGGAGAAAAGT 59.145 39.130 0.00 0.00 0.00 2.66
5506 12230 4.102649 AGCAAAACGAAAACGGAGAAAAG 58.897 39.130 0.00 0.00 0.00 2.27
5507 12231 4.099380 AGCAAAACGAAAACGGAGAAAA 57.901 36.364 0.00 0.00 0.00 2.29
5508 12232 3.768468 AGCAAAACGAAAACGGAGAAA 57.232 38.095 0.00 0.00 0.00 2.52
5509 12233 3.768468 AAGCAAAACGAAAACGGAGAA 57.232 38.095 0.00 0.00 0.00 2.87
5510 12234 3.768468 AAAGCAAAACGAAAACGGAGA 57.232 38.095 0.00 0.00 0.00 3.71
5511 12235 4.594136 AGTAAAGCAAAACGAAAACGGAG 58.406 39.130 0.00 0.00 0.00 4.63
5512 12236 4.619437 AGTAAAGCAAAACGAAAACGGA 57.381 36.364 0.00 0.00 0.00 4.69
5513 12237 5.513849 AGAAAGTAAAGCAAAACGAAAACGG 59.486 36.000 0.00 0.00 0.00 4.44
5514 12238 6.468000 AGAGAAAGTAAAGCAAAACGAAAACG 59.532 34.615 0.00 0.00 0.00 3.60
5515 12239 7.696872 AGAGAGAAAGTAAAGCAAAACGAAAAC 59.303 33.333 0.00 0.00 0.00 2.43
5516 12240 7.758495 AGAGAGAAAGTAAAGCAAAACGAAAA 58.242 30.769 0.00 0.00 0.00 2.29
5517 12241 7.316544 AGAGAGAAAGTAAAGCAAAACGAAA 57.683 32.000 0.00 0.00 0.00 3.46
5518 12242 6.920569 AGAGAGAAAGTAAAGCAAAACGAA 57.079 33.333 0.00 0.00 0.00 3.85
5519 12243 6.920569 AAGAGAGAAAGTAAAGCAAAACGA 57.079 33.333 0.00 0.00 0.00 3.85
5520 12244 7.971004 AAAAGAGAGAAAGTAAAGCAAAACG 57.029 32.000 0.00 0.00 0.00 3.60
5552 12276 9.189156 TGAGAAAGAAGAAATGAAGAGGAAAAA 57.811 29.630 0.00 0.00 0.00 1.94
5553 12277 8.752005 TGAGAAAGAAGAAATGAAGAGGAAAA 57.248 30.769 0.00 0.00 0.00 2.29
5554 12278 8.752005 TTGAGAAAGAAGAAATGAAGAGGAAA 57.248 30.769 0.00 0.00 0.00 3.13
5555 12279 8.752005 TTTGAGAAAGAAGAAATGAAGAGGAA 57.248 30.769 0.00 0.00 0.00 3.36
5556 12280 8.930846 ATTTGAGAAAGAAGAAATGAAGAGGA 57.069 30.769 0.00 0.00 0.00 3.71
5557 12281 8.242739 GGATTTGAGAAAGAAGAAATGAAGAGG 58.757 37.037 0.00 0.00 0.00 3.69
5558 12282 8.790718 TGGATTTGAGAAAGAAGAAATGAAGAG 58.209 33.333 0.00 0.00 0.00 2.85
5559 12283 8.696043 TGGATTTGAGAAAGAAGAAATGAAGA 57.304 30.769 0.00 0.00 0.00 2.87
5560 12284 9.355215 CATGGATTTGAGAAAGAAGAAATGAAG 57.645 33.333 0.00 0.00 0.00 3.02
5561 12285 9.081204 TCATGGATTTGAGAAAGAAGAAATGAA 57.919 29.630 0.00 0.00 0.00 2.57
5562 12286 8.640063 TCATGGATTTGAGAAAGAAGAAATGA 57.360 30.769 0.00 0.00 0.00 2.57
5563 12287 9.136952 GTTCATGGATTTGAGAAAGAAGAAATG 57.863 33.333 0.00 0.00 0.00 2.32
5564 12288 9.086758 AGTTCATGGATTTGAGAAAGAAGAAAT 57.913 29.630 0.00 0.00 0.00 2.17
5565 12289 8.469309 AGTTCATGGATTTGAGAAAGAAGAAA 57.531 30.769 0.00 0.00 0.00 2.52
5566 12290 8.469309 AAGTTCATGGATTTGAGAAAGAAGAA 57.531 30.769 0.00 0.00 0.00 2.52
5567 12291 8.469309 AAAGTTCATGGATTTGAGAAAGAAGA 57.531 30.769 0.00 0.00 0.00 2.87
5568 12292 9.538508 AAAAAGTTCATGGATTTGAGAAAGAAG 57.461 29.630 0.00 0.00 0.00 2.85
5603 12327 9.701355 CGCAAATTTGTAAAAGAGTTTTTGAAT 57.299 25.926 19.03 0.00 37.12 2.57
5604 12328 8.926710 TCGCAAATTTGTAAAAGAGTTTTTGAA 58.073 25.926 19.03 0.00 37.12 2.69
5605 12329 8.467402 TCGCAAATTTGTAAAAGAGTTTTTGA 57.533 26.923 19.03 0.00 37.12 2.69
5606 12330 9.701355 AATCGCAAATTTGTAAAAGAGTTTTTG 57.299 25.926 19.03 0.00 37.12 2.44
5610 12334 9.914923 GAAAAATCGCAAATTTGTAAAAGAGTT 57.085 25.926 19.03 12.62 0.00 3.01
5611 12335 9.313118 AGAAAAATCGCAAATTTGTAAAAGAGT 57.687 25.926 19.03 8.07 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.