Multiple sequence alignment - TraesCS1B01G049700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G049700 chr1B 100.000 3956 0 0 3422 7377 29404471 29400516 0.000000e+00 7306.0
1 TraesCS1B01G049700 chr1B 100.000 3080 0 0 1 3080 29407892 29404813 0.000000e+00 5688.0
2 TraesCS1B01G049700 chr1B 92.909 2355 125 18 4372 6686 10570522 10568170 0.000000e+00 3386.0
3 TraesCS1B01G049700 chr1B 90.052 1729 90 25 378 2070 10573029 10571347 0.000000e+00 2165.0
4 TraesCS1B01G049700 chr1B 92.862 1499 95 3 5032 6529 10946995 10948482 0.000000e+00 2165.0
5 TraesCS1B01G049700 chr1B 92.844 1076 48 11 1022 2070 10944518 10945591 0.000000e+00 1533.0
6 TraesCS1B01G049700 chr1B 90.614 1140 77 14 3917 5034 10945829 10946960 0.000000e+00 1485.0
7 TraesCS1B01G049700 chr1B 86.897 870 60 23 6529 7377 10568329 10567493 0.000000e+00 926.0
8 TraesCS1B01G049700 chr1B 82.754 690 66 19 342 1023 10943843 10944487 3.860000e-157 566.0
9 TraesCS1B01G049700 chr1B 89.720 428 40 3 6619 7043 10948567 10948993 1.810000e-150 544.0
10 TraesCS1B01G049700 chr1B 77.865 768 132 24 5620 6365 3212780 3213531 6.790000e-120 442.0
11 TraesCS1B01G049700 chr1B 89.181 342 24 4 7048 7377 10950816 10951156 1.480000e-111 414.0
12 TraesCS1B01G049700 chr1B 87.861 346 26 11 3964 4297 10570878 10570537 6.940000e-105 392.0
13 TraesCS1B01G049700 chr1B 90.661 257 9 7 3572 3828 10571357 10571116 1.980000e-85 327.0
14 TraesCS1B01G049700 chr1B 97.159 176 5 0 3571 3746 10945579 10945754 1.560000e-76 298.0
15 TraesCS1B01G049700 chr1B 94.969 159 7 1 384 542 10573534 10573377 1.590000e-61 248.0
16 TraesCS1B01G049700 chr1B 94.074 135 6 2 3765 3899 10571032 10570900 3.490000e-48 204.0
17 TraesCS1B01G049700 chr1B 98.684 76 1 0 3753 3828 10571115 10571040 1.290000e-27 135.0
18 TraesCS1B01G049700 chr3A 98.028 1014 19 1 2068 3080 50954671 50953658 0.000000e+00 1760.0
19 TraesCS1B01G049700 chr3A 85.362 690 70 19 2067 2729 571324412 571325097 0.000000e+00 686.0
20 TraesCS1B01G049700 chr3A 83.676 680 71 20 2068 2745 38335092 38335733 8.190000e-169 604.0
21 TraesCS1B01G049700 chr3A 95.425 153 7 0 3422 3574 50953419 50953267 2.060000e-60 244.0
22 TraesCS1B01G049700 chr3A 92.667 150 11 0 3422 3571 571325633 571325782 4.480000e-52 217.0
23 TraesCS1B01G049700 chr3A 92.667 150 11 0 3422 3571 587409293 587409144 4.480000e-52 217.0
24 TraesCS1B01G049700 chr3A 89.474 114 11 1 26 138 427767611 427767498 7.720000e-30 143.0
25 TraesCS1B01G049700 chr3A 90.789 76 6 1 26 100 313046208 313046133 4.710000e-17 100.0
26 TraesCS1B01G049700 chr4A 97.931 1015 21 0 2066 3080 692476353 692475339 0.000000e+00 1759.0
27 TraesCS1B01G049700 chr4A 97.358 1022 24 3 2060 3080 693531619 693530600 0.000000e+00 1735.0
28 TraesCS1B01G049700 chr4A 94.660 206 11 0 132 337 731617250 731617045 3.320000e-83 320.0
29 TraesCS1B01G049700 chr4A 95.625 160 6 1 3422 3580 693530526 693530367 9.500000e-64 255.0
30 TraesCS1B01G049700 chr4A 91.096 146 13 0 1113 1258 145349770 145349625 1.620000e-46 198.0
31 TraesCS1B01G049700 chr4A 92.793 111 8 0 5277 5387 101750478 101750368 2.130000e-35 161.0
32 TraesCS1B01G049700 chr4A 92.793 111 8 0 5277 5387 150653313 150653423 2.130000e-35 161.0
33 TraesCS1B01G049700 chr4B 97.345 1017 25 2 2066 3080 515508353 515507337 0.000000e+00 1727.0
34 TraesCS1B01G049700 chr4B 93.117 1017 67 3 2065 3080 664554806 664553792 0.000000e+00 1487.0
35 TraesCS1B01G049700 chr4B 92.300 1013 63 7 2068 3080 486259948 486258951 0.000000e+00 1424.0
36 TraesCS1B01G049700 chr4B 96.689 151 5 0 3422 3572 515507267 515507117 1.230000e-62 252.0
37 TraesCS1B01G049700 chr4B 91.489 141 12 0 1113 1253 405903050 405903190 2.100000e-45 195.0
38 TraesCS1B01G049700 chr4B 90.179 112 11 0 5277 5388 601790203 601790314 5.960000e-31 147.0
39 TraesCS1B01G049700 chr6B 92.709 1015 62 8 2068 3080 229724303 229723299 0.000000e+00 1454.0
40 TraesCS1B01G049700 chr6B 94.712 208 11 0 130 337 714947628 714947835 2.570000e-84 324.0
41 TraesCS1B01G049700 chr6B 93.506 154 10 0 3422 3575 229723218 229723065 5.760000e-56 230.0
42 TraesCS1B01G049700 chr6B 90.435 115 10 1 5273 5387 450150579 450150692 4.610000e-32 150.0
43 TraesCS1B01G049700 chr3B 92.702 1014 58 5 2068 3080 66882639 66883637 0.000000e+00 1448.0
44 TraesCS1B01G049700 chr3B 92.224 1016 58 9 2066 3080 14395415 14396410 0.000000e+00 1419.0
45 TraesCS1B01G049700 chr3B 94.286 210 9 3 132 339 141816208 141816000 1.190000e-82 318.0
46 TraesCS1B01G049700 chr7B 90.640 1015 67 7 2066 3080 334314064 334313078 0.000000e+00 1323.0
47 TraesCS1B01G049700 chr7B 79.127 527 87 19 4172 4690 655570452 655569941 7.090000e-90 342.0
48 TraesCS1B01G049700 chr7B 93.427 213 13 1 126 337 1757382 1757594 1.550000e-81 315.0
49 TraesCS1B01G049700 chr7B 93.396 212 14 0 134 345 617834098 617834309 1.550000e-81 315.0
50 TraesCS1B01G049700 chr7B 91.667 228 14 5 123 348 655658875 655658651 2.000000e-80 311.0
51 TraesCS1B01G049700 chr7B 93.333 150 10 0 3422 3571 559637644 559637495 9.630000e-54 222.0
52 TraesCS1B01G049700 chr7B 88.596 114 12 1 26 138 284953517 284953404 3.590000e-28 137.0
53 TraesCS1B01G049700 chr7D 93.190 279 17 2 2801 3078 10857533 10857256 6.890000e-110 409.0
54 TraesCS1B01G049700 chr7D 94.194 155 8 1 3422 3576 3849010 3848857 1.240000e-57 235.0
55 TraesCS1B01G049700 chr7D 90.991 111 10 0 5277 5387 135047502 135047612 4.610000e-32 150.0
56 TraesCS1B01G049700 chr1D 81.370 467 52 12 1110 1568 9283502 9283941 1.520000e-91 348.0
57 TraesCS1B01G049700 chr1D 90.265 113 11 0 5275 5387 323952249 323952137 1.660000e-31 148.0
58 TraesCS1B01G049700 chr1D 89.189 111 12 0 5277 5387 435755689 435755579 9.980000e-29 139.0
59 TraesCS1B01G049700 chr1D 88.034 117 13 1 5273 5388 286391235 286391119 3.590000e-28 137.0
60 TraesCS1B01G049700 chr2B 94.860 214 10 1 129 341 792778155 792777942 4.270000e-87 333.0
61 TraesCS1B01G049700 chr2B 93.377 151 9 1 3422 3571 648644469 648644619 9.630000e-54 222.0
62 TraesCS1B01G049700 chr2B 92.793 111 8 0 5277 5387 465805907 465806017 2.130000e-35 161.0
63 TraesCS1B01G049700 chr2B 90.265 113 10 1 26 137 37971720 37971608 5.960000e-31 147.0
64 TraesCS1B01G049700 chr1A 94.660 206 11 0 133 338 6671698 6671493 3.320000e-83 320.0
65 TraesCS1B01G049700 chr1A 86.111 144 20 0 1111 1254 10241558 10241415 9.910000e-34 156.0
66 TraesCS1B01G049700 chr6A 93.023 215 15 0 122 336 4859119 4859333 1.550000e-81 315.0
67 TraesCS1B01G049700 chr6A 85.380 171 21 2 1109 1279 1126234 1126400 2.740000e-39 174.0
68 TraesCS1B01G049700 chr6A 81.752 137 23 2 5649 5784 1133629 1133764 6.050000e-21 113.0
69 TraesCS1B01G049700 chr5B 79.055 487 73 23 4216 4692 239338550 239338083 2.590000e-79 307.0
70 TraesCS1B01G049700 chr5B 92.035 113 9 0 26 138 192866610 192866722 7.660000e-35 159.0
71 TraesCS1B01G049700 chr4D 78.601 486 85 17 4215 4690 105230549 105231025 3.340000e-78 303.0
72 TraesCS1B01G049700 chr4D 88.667 150 17 0 1113 1262 325544529 325544678 4.550000e-42 183.0
73 TraesCS1B01G049700 chr4D 87.421 159 19 1 4534 4692 208900779 208900622 1.630000e-41 182.0
74 TraesCS1B01G049700 chr4D 92.241 116 8 1 24 138 163759985 163760100 5.920000e-36 163.0
75 TraesCS1B01G049700 chr4D 91.892 111 9 0 5277 5387 465125471 465125361 9.910000e-34 156.0
76 TraesCS1B01G049700 chr4D 89.189 111 11 1 5277 5387 363677389 363677498 3.590000e-28 137.0
77 TraesCS1B01G049700 chr4D 89.189 111 9 1 5277 5387 25439954 25439847 1.290000e-27 135.0
78 TraesCS1B01G049700 chr4D 90.291 103 9 1 5280 5381 94260895 94260793 4.640000e-27 134.0
79 TraesCS1B01G049700 chr4D 88.393 112 11 2 5277 5387 230542711 230542601 4.640000e-27 134.0
80 TraesCS1B01G049700 chr6D 78.117 393 71 14 4306 4690 43953772 43954157 1.240000e-57 235.0
81 TraesCS1B01G049700 chr6D 91.071 112 10 0 5276 5387 460744925 460745036 1.280000e-32 152.0
82 TraesCS1B01G049700 chr6D 89.381 113 10 2 5276 5387 15801109 15801220 2.770000e-29 141.0
83 TraesCS1B01G049700 chr6D 89.381 113 10 2 5276 5387 394588759 394588648 2.770000e-29 141.0
84 TraesCS1B01G049700 chr6D 88.596 114 12 1 5274 5387 104342724 104342836 3.590000e-28 137.0
85 TraesCS1B01G049700 chr3D 93.750 112 7 0 5276 5387 375693991 375693880 1.270000e-37 169.0
86 TraesCS1B01G049700 chr5D 92.982 114 7 1 26 138 152753945 152754058 1.650000e-36 165.0
87 TraesCS1B01G049700 chr5D 91.071 112 10 0 5276 5387 509138385 509138274 1.280000e-32 152.0
88 TraesCS1B01G049700 chr5D 89.474 114 12 0 5274 5387 412100094 412100207 2.150000e-30 145.0
89 TraesCS1B01G049700 chr5D 87.705 122 15 0 5266 5387 461072591 461072712 7.720000e-30 143.0
90 TraesCS1B01G049700 chr2D 91.304 115 9 1 5273 5387 78567555 78567668 9.910000e-34 156.0
91 TraesCS1B01G049700 chr2D 91.150 113 6 3 5277 5387 498473158 498473048 4.610000e-32 150.0
92 TraesCS1B01G049700 chr2D 83.333 114 18 1 26 138 613440123 613440236 3.640000e-18 104.0
93 TraesCS1B01G049700 chr2D 83.824 68 7 3 5646 5711 627974661 627974726 2.220000e-05 62.1
94 TraesCS1B01G049700 chr2A 90.435 115 11 0 5273 5387 78849617 78849731 1.280000e-32 152.0
95 TraesCS1B01G049700 chr2A 89.189 111 11 1 27 136 10087751 10087641 3.590000e-28 137.0
96 TraesCS1B01G049700 chrUn 89.474 114 12 0 5274 5387 109082784 109082897 2.150000e-30 145.0
97 TraesCS1B01G049700 chrUn 90.090 111 10 1 5277 5387 81477799 81477690 7.720000e-30 143.0
98 TraesCS1B01G049700 chrUn 89.189 111 10 1 5277 5387 96478384 96478276 3.590000e-28 137.0
99 TraesCS1B01G049700 chrUn 88.288 111 13 0 5277 5387 96474145 96474035 4.640000e-27 134.0
100 TraesCS1B01G049700 chrUn 87.611 113 14 0 5275 5387 15502819 15502707 1.670000e-26 132.0
101 TraesCS1B01G049700 chrUn 85.965 114 16 0 5274 5387 116432765 116432652 1.010000e-23 122.0
102 TraesCS1B01G049700 chrUn 84.746 118 18 0 5273 5390 132253015 132252898 1.300000e-22 119.0
103 TraesCS1B01G049700 chrUn 85.714 112 15 1 5276 5387 49825797 49825907 4.680000e-22 117.0
104 TraesCS1B01G049700 chrUn 84.071 113 18 0 5275 5387 93546483 93546595 7.830000e-20 110.0
105 TraesCS1B01G049700 chr7A 80.233 172 29 4 4521 4689 2425495 2425664 2.790000e-24 124.0
106 TraesCS1B01G049700 chr7A 80.233 172 29 4 4521 4689 2460580 2460749 2.790000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G049700 chr1B 29400516 29407892 7376 True 6497.000000 7306 100.000000 1 7377 2 chr1B.!!$R2 7376
1 TraesCS1B01G049700 chr1B 10943843 10951156 7313 False 1000.714286 2165 90.733429 342 7377 7 chr1B.!!$F2 7035
2 TraesCS1B01G049700 chr1B 10567493 10573534 6041 True 972.875000 3386 92.013375 378 7377 8 chr1B.!!$R1 6999
3 TraesCS1B01G049700 chr1B 3212780 3213531 751 False 442.000000 442 77.865000 5620 6365 1 chr1B.!!$F1 745
4 TraesCS1B01G049700 chr3A 50953267 50954671 1404 True 1002.000000 1760 96.726500 2068 3574 2 chr3A.!!$R4 1506
5 TraesCS1B01G049700 chr3A 38335092 38335733 641 False 604.000000 604 83.676000 2068 2745 1 chr3A.!!$F1 677
6 TraesCS1B01G049700 chr3A 571324412 571325782 1370 False 451.500000 686 89.014500 2067 3571 2 chr3A.!!$F2 1504
7 TraesCS1B01G049700 chr4A 692475339 692476353 1014 True 1759.000000 1759 97.931000 2066 3080 1 chr4A.!!$R3 1014
8 TraesCS1B01G049700 chr4A 693530367 693531619 1252 True 995.000000 1735 96.491500 2060 3580 2 chr4A.!!$R5 1520
9 TraesCS1B01G049700 chr4B 664553792 664554806 1014 True 1487.000000 1487 93.117000 2065 3080 1 chr4B.!!$R2 1015
10 TraesCS1B01G049700 chr4B 486258951 486259948 997 True 1424.000000 1424 92.300000 2068 3080 1 chr4B.!!$R1 1012
11 TraesCS1B01G049700 chr4B 515507117 515508353 1236 True 989.500000 1727 97.017000 2066 3572 2 chr4B.!!$R3 1506
12 TraesCS1B01G049700 chr6B 229723065 229724303 1238 True 842.000000 1454 93.107500 2068 3575 2 chr6B.!!$R1 1507
13 TraesCS1B01G049700 chr3B 66882639 66883637 998 False 1448.000000 1448 92.702000 2068 3080 1 chr3B.!!$F2 1012
14 TraesCS1B01G049700 chr3B 14395415 14396410 995 False 1419.000000 1419 92.224000 2066 3080 1 chr3B.!!$F1 1014
15 TraesCS1B01G049700 chr7B 334313078 334314064 986 True 1323.000000 1323 90.640000 2066 3080 1 chr7B.!!$R2 1014
16 TraesCS1B01G049700 chr7B 655569941 655570452 511 True 342.000000 342 79.127000 4172 4690 1 chr7B.!!$R4 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.0 40.15 5.14 F
818 949 0.249073 GTCATCTCGCGGTGCTATGT 60.249 55.000 6.13 0.0 0.00 2.29 F
819 950 0.459899 TCATCTCGCGGTGCTATGTT 59.540 50.000 6.13 0.0 0.00 2.71 F
1957 2153 0.516877 CGCGGTGCATTCTCTGAAAA 59.483 50.000 0.00 0.0 0.00 2.29 F
2423 2663 0.179048 CCATTGTAGCTCCGATGGCA 60.179 55.000 12.32 0.0 33.34 4.92 F
2579 2821 0.872388 AAAAGCTTCAACCGGCTACG 59.128 50.000 0.00 0.0 37.87 3.51 F
3751 4106 1.350019 AGTTTTAGGAGGTGAACCCCG 59.650 52.381 0.00 0.0 36.42 5.73 F
4658 5172 0.808755 CCTTTCTATTGGCGCGGTTT 59.191 50.000 8.83 0.0 0.00 3.27 F
4752 5266 1.206132 TGGGCACTACGACCACTATTG 59.794 52.381 0.00 0.0 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1099 1269 0.032117 TCCCCATCCTCTCGTCACAT 60.032 55.000 0.00 0.0 0.00 3.21 R
1824 2016 0.399075 AACCCTTCGTCCAACCGAAT 59.601 50.000 0.00 0.0 44.93 3.34 R
2423 2663 1.006102 CCAGTGAGCTTCGGTCGTT 60.006 57.895 0.00 0.0 32.15 3.85 R
3924 4413 0.180406 AAGTTTGAGCCGGTGACACT 59.820 50.000 1.90 0.0 0.00 3.55 R
3926 4415 1.139256 TGTAAGTTTGAGCCGGTGACA 59.861 47.619 1.90 0.0 0.00 3.58 R
4161 4659 2.176889 ACGGACCACTAGTTGCATAGT 58.823 47.619 0.00 0.0 36.41 2.12 R
4782 5296 0.613260 AACATGGCGCTCCTCTTGTA 59.387 50.000 7.64 0.0 0.00 2.41 R
5865 6415 1.153756 CCTTGGACTTGGTGGGCTT 59.846 57.895 0.00 0.0 0.00 4.35 R
6709 7314 1.827399 AAGCAACGGGACCGAGATGT 61.827 55.000 18.80 0.0 42.83 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.103948 TCAATTTTCAAAGAGATCTGAAGGAC 57.896 34.615 0.00 0.00 33.30 3.85
41 42 7.684937 ATTTTCAAAGAGATCTGAAGGACTG 57.315 36.000 0.00 0.00 33.30 3.51
42 43 4.815533 TCAAAGAGATCTGAAGGACTGG 57.184 45.455 0.00 0.00 0.00 4.00
43 44 4.420206 TCAAAGAGATCTGAAGGACTGGA 58.580 43.478 0.00 0.00 0.00 3.86
44 45 4.840680 TCAAAGAGATCTGAAGGACTGGAA 59.159 41.667 0.00 0.00 0.00 3.53
45 46 5.486775 TCAAAGAGATCTGAAGGACTGGAAT 59.513 40.000 0.00 0.00 0.00 3.01
46 47 6.669591 TCAAAGAGATCTGAAGGACTGGAATA 59.330 38.462 0.00 0.00 0.00 1.75
48 49 6.916360 AGAGATCTGAAGGACTGGAATATC 57.084 41.667 0.00 0.00 0.00 1.63
49 50 6.380414 AGAGATCTGAAGGACTGGAATATCA 58.620 40.000 0.00 0.00 0.00 2.15
51 52 7.178983 AGAGATCTGAAGGACTGGAATATCATC 59.821 40.741 0.00 0.00 0.00 2.92
52 53 6.786461 AGATCTGAAGGACTGGAATATCATCA 59.214 38.462 0.00 0.00 0.00 3.07
54 55 7.199167 TCTGAAGGACTGGAATATCATCAAA 57.801 36.000 0.00 0.00 0.00 2.69
55 56 7.278135 TCTGAAGGACTGGAATATCATCAAAG 58.722 38.462 0.00 0.00 0.00 2.77
57 58 7.809238 TGAAGGACTGGAATATCATCAAAGAT 58.191 34.615 0.00 0.00 0.00 2.40
58 59 8.277197 TGAAGGACTGGAATATCATCAAAGATT 58.723 33.333 0.00 0.00 0.00 2.40
59 60 9.784531 GAAGGACTGGAATATCATCAAAGATTA 57.215 33.333 0.00 0.00 0.00 1.75
60 61 9.790344 AAGGACTGGAATATCATCAAAGATTAG 57.210 33.333 0.00 0.00 0.00 1.73
61 62 7.882271 AGGACTGGAATATCATCAAAGATTAGC 59.118 37.037 0.00 0.00 0.00 3.09
62 63 7.120432 GGACTGGAATATCATCAAAGATTAGCC 59.880 40.741 0.00 0.00 0.00 3.93
66 67 7.395206 TGGAATATCATCAAAGATTAGCCATGG 59.605 37.037 7.63 7.63 0.00 3.66
70 71 9.848710 ATATCATCAAAGATTAGCCATGGATAG 57.151 33.333 18.40 0.00 0.00 2.08
72 73 5.246981 TCAAAGATTAGCCATGGATAGGG 57.753 43.478 18.40 0.82 0.00 3.53
73 74 4.043310 TCAAAGATTAGCCATGGATAGGGG 59.957 45.833 18.40 1.54 0.00 4.79
74 75 3.297994 AGATTAGCCATGGATAGGGGT 57.702 47.619 18.40 0.66 41.92 4.95
75 76 2.915604 AGATTAGCCATGGATAGGGGTG 59.084 50.000 18.40 0.00 39.12 4.61
76 77 0.771127 TTAGCCATGGATAGGGGTGC 59.229 55.000 18.40 0.00 39.12 5.01
79 80 1.227943 CCATGGATAGGGGTGCGTG 60.228 63.158 5.56 0.00 0.00 5.34
80 81 1.227943 CATGGATAGGGGTGCGTGG 60.228 63.158 0.00 0.00 0.00 4.94
82 83 0.986019 ATGGATAGGGGTGCGTGGAA 60.986 55.000 0.00 0.00 0.00 3.53
83 84 1.146263 GGATAGGGGTGCGTGGAAG 59.854 63.158 0.00 0.00 0.00 3.46
84 85 1.623542 GGATAGGGGTGCGTGGAAGT 61.624 60.000 0.00 0.00 0.00 3.01
85 86 0.252197 GATAGGGGTGCGTGGAAGTT 59.748 55.000 0.00 0.00 0.00 2.66
86 87 1.483415 GATAGGGGTGCGTGGAAGTTA 59.517 52.381 0.00 0.00 0.00 2.24
87 88 1.575419 TAGGGGTGCGTGGAAGTTAT 58.425 50.000 0.00 0.00 0.00 1.89
88 89 0.252197 AGGGGTGCGTGGAAGTTATC 59.748 55.000 0.00 0.00 0.00 1.75
89 90 0.252197 GGGGTGCGTGGAAGTTATCT 59.748 55.000 0.00 0.00 0.00 1.98
91 92 2.093341 GGGGTGCGTGGAAGTTATCTAA 60.093 50.000 0.00 0.00 0.00 2.10
92 93 2.934553 GGGTGCGTGGAAGTTATCTAAC 59.065 50.000 0.00 0.00 36.46 2.34
93 94 2.934553 GGTGCGTGGAAGTTATCTAACC 59.065 50.000 0.00 0.00 36.88 2.85
94 95 3.592059 GTGCGTGGAAGTTATCTAACCA 58.408 45.455 0.00 0.00 36.88 3.67
95 96 4.189231 GTGCGTGGAAGTTATCTAACCAT 58.811 43.478 0.00 0.00 36.88 3.55
96 97 4.034048 GTGCGTGGAAGTTATCTAACCATG 59.966 45.833 0.00 0.00 38.74 3.66
97 98 4.189231 GCGTGGAAGTTATCTAACCATGT 58.811 43.478 14.87 0.00 38.38 3.21
98 99 4.034048 GCGTGGAAGTTATCTAACCATGTG 59.966 45.833 14.87 0.00 38.38 3.21
99 100 4.034048 CGTGGAAGTTATCTAACCATGTGC 59.966 45.833 0.00 0.00 36.88 4.57
100 101 4.335594 GTGGAAGTTATCTAACCATGTGCC 59.664 45.833 0.00 0.00 36.88 5.01
101 102 4.018870 TGGAAGTTATCTAACCATGTGCCA 60.019 41.667 0.00 0.00 36.88 4.92
103 104 5.428253 GAAGTTATCTAACCATGTGCCAGA 58.572 41.667 0.00 0.00 36.88 3.86
104 105 5.435686 AGTTATCTAACCATGTGCCAGAA 57.564 39.130 0.00 0.00 36.88 3.02
106 107 2.113860 TCTAACCATGTGCCAGAAGC 57.886 50.000 0.00 0.00 44.14 3.86
107 108 8.490750 AGTTATCTAACCATGTGCCAGAAGCA 62.491 42.308 0.00 0.00 42.52 3.91
108 109 9.701891 AGTTATCTAACCATGTGCCAGAAGCAT 62.702 40.741 0.00 0.00 44.74 3.79
118 119 1.615392 GCCAGAAGCATGAGTTGGTTT 59.385 47.619 0.00 0.00 45.76 3.27
119 120 2.352127 GCCAGAAGCATGAGTTGGTTTC 60.352 50.000 0.00 0.00 45.76 2.78
120 121 2.095567 CCAGAAGCATGAGTTGGTTTCG 60.096 50.000 0.00 0.00 45.76 3.46
121 122 2.807967 CAGAAGCATGAGTTGGTTTCGA 59.192 45.455 0.00 0.00 45.76 3.71
122 123 3.070018 AGAAGCATGAGTTGGTTTCGAG 58.930 45.455 0.00 0.00 45.76 4.04
123 124 2.839486 AGCATGAGTTGGTTTCGAGA 57.161 45.000 0.00 0.00 29.87 4.04
125 126 4.471904 AGCATGAGTTGGTTTCGAGATA 57.528 40.909 0.00 0.00 29.87 1.98
126 127 5.028549 AGCATGAGTTGGTTTCGAGATAT 57.971 39.130 0.00 0.00 29.87 1.63
127 128 5.431765 AGCATGAGTTGGTTTCGAGATATT 58.568 37.500 0.00 0.00 29.87 1.28
128 129 6.582636 AGCATGAGTTGGTTTCGAGATATTA 58.417 36.000 0.00 0.00 29.87 0.98
129 130 7.220030 AGCATGAGTTGGTTTCGAGATATTAT 58.780 34.615 0.00 0.00 29.87 1.28
130 131 7.172190 AGCATGAGTTGGTTTCGAGATATTATG 59.828 37.037 0.00 0.00 29.87 1.90
131 132 7.571983 GCATGAGTTGGTTTCGAGATATTATGG 60.572 40.741 0.00 0.00 0.00 2.74
132 133 6.288294 TGAGTTGGTTTCGAGATATTATGGG 58.712 40.000 0.00 0.00 0.00 4.00
133 134 6.126883 TGAGTTGGTTTCGAGATATTATGGGT 60.127 38.462 0.00 0.00 0.00 4.51
134 135 6.659824 AGTTGGTTTCGAGATATTATGGGTT 58.340 36.000 0.00 0.00 0.00 4.11
135 136 7.116736 AGTTGGTTTCGAGATATTATGGGTTT 58.883 34.615 0.00 0.00 0.00 3.27
136 137 7.282450 AGTTGGTTTCGAGATATTATGGGTTTC 59.718 37.037 0.00 0.00 0.00 2.78
137 138 6.654959 TGGTTTCGAGATATTATGGGTTTCA 58.345 36.000 0.00 0.00 0.00 2.69
138 139 7.113437 TGGTTTCGAGATATTATGGGTTTCAA 58.887 34.615 0.00 0.00 0.00 2.69
139 140 7.066525 TGGTTTCGAGATATTATGGGTTTCAAC 59.933 37.037 0.00 0.00 0.00 3.18
158 159 4.912766 TCAACCAAAGTTTTAAATAGCGCG 59.087 37.500 0.00 0.00 32.45 6.86
159 160 3.239254 ACCAAAGTTTTAAATAGCGCGC 58.761 40.909 26.66 26.66 0.00 6.86
161 162 4.154556 ACCAAAGTTTTAAATAGCGCGCTA 59.845 37.500 39.72 39.72 0.00 4.26
162 163 5.090083 CCAAAGTTTTAAATAGCGCGCTAA 58.910 37.500 40.90 26.03 31.73 3.09
163 164 5.227184 CCAAAGTTTTAAATAGCGCGCTAAG 59.773 40.000 40.90 15.74 31.73 2.18
164 165 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
176 177 1.856012 GCTAAGCATCTTAGCGCCG 59.144 57.895 18.95 0.00 38.12 6.46
178 179 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
179 180 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
181 182 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
182 183 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
184 185 1.457009 ATCTTAGCGCCGGACCTCTC 61.457 60.000 5.05 0.00 0.00 3.20
185 186 2.044252 TTAGCGCCGGACCTCTCT 60.044 61.111 5.05 0.00 0.00 3.10
188 189 2.831894 TAGCGCCGGACCTCTCTCAA 62.832 60.000 5.05 0.00 0.00 3.02
189 190 2.970639 CGCCGGACCTCTCTCAAA 59.029 61.111 5.05 0.00 0.00 2.69
191 192 0.807667 CGCCGGACCTCTCTCAAATG 60.808 60.000 5.05 0.00 0.00 2.32
192 193 1.092345 GCCGGACCTCTCTCAAATGC 61.092 60.000 5.05 0.00 0.00 3.56
193 194 0.539051 CCGGACCTCTCTCAAATGCT 59.461 55.000 0.00 0.00 0.00 3.79
194 195 1.757118 CCGGACCTCTCTCAAATGCTA 59.243 52.381 0.00 0.00 0.00 3.49
196 197 3.574396 CCGGACCTCTCTCAAATGCTATA 59.426 47.826 0.00 0.00 0.00 1.31
198 199 4.565022 GGACCTCTCTCAAATGCTATAGC 58.435 47.826 18.18 18.18 42.50 2.97
201 202 3.986572 CCTCTCTCAAATGCTATAGCGTG 59.013 47.826 20.02 16.47 45.83 5.34
202 203 3.384668 TCTCTCAAATGCTATAGCGTGC 58.615 45.455 20.02 0.00 45.83 5.34
203 204 3.068732 TCTCTCAAATGCTATAGCGTGCT 59.931 43.478 20.02 7.98 45.83 4.40
204 205 4.278419 TCTCTCAAATGCTATAGCGTGCTA 59.722 41.667 20.02 3.73 45.83 3.49
206 207 6.151144 TCTCTCAAATGCTATAGCGTGCTATA 59.849 38.462 20.02 17.96 45.83 1.31
215 216 1.982660 AGCGTGCTATAGTGGAGCTA 58.017 50.000 10.75 0.00 40.76 3.32
216 217 2.520069 AGCGTGCTATAGTGGAGCTAT 58.480 47.619 10.75 0.00 42.63 2.97
217 218 3.687125 AGCGTGCTATAGTGGAGCTATA 58.313 45.455 10.75 0.00 40.61 1.31
219 220 4.336993 AGCGTGCTATAGTGGAGCTATATC 59.663 45.833 10.75 0.00 40.67 1.63
220 221 4.786927 GCGTGCTATAGTGGAGCTATATCG 60.787 50.000 0.84 0.00 40.67 2.92
221 222 4.602995 GTGCTATAGTGGAGCTATATCGC 58.397 47.826 0.84 0.00 40.67 4.58
222 223 3.312697 TGCTATAGTGGAGCTATATCGCG 59.687 47.826 0.00 0.00 40.67 5.87
224 225 1.822506 TAGTGGAGCTATATCGCGCT 58.177 50.000 5.56 0.00 39.61 5.92
226 227 2.370349 AGTGGAGCTATATCGCGCTAT 58.630 47.619 5.56 7.70 36.45 2.97
227 228 2.755655 AGTGGAGCTATATCGCGCTATT 59.244 45.455 7.89 0.00 36.45 1.73
228 229 3.193691 AGTGGAGCTATATCGCGCTATTT 59.806 43.478 7.89 0.00 36.45 1.40
230 231 5.100259 GTGGAGCTATATCGCGCTATTTAA 58.900 41.667 7.89 0.00 36.45 1.52
232 233 6.090358 GTGGAGCTATATCGCGCTATTTAAAA 59.910 38.462 7.89 0.00 36.45 1.52
233 234 6.816640 TGGAGCTATATCGCGCTATTTAAAAT 59.183 34.615 7.89 0.00 36.45 1.82
234 235 7.119997 GGAGCTATATCGCGCTATTTAAAATG 58.880 38.462 7.89 0.00 36.45 2.32
235 236 7.201530 GGAGCTATATCGCGCTATTTAAAATGT 60.202 37.037 7.89 0.00 36.45 2.71
236 237 8.029642 AGCTATATCGCGCTATTTAAAATGTT 57.970 30.769 7.89 0.00 34.11 2.71
237 238 8.504005 AGCTATATCGCGCTATTTAAAATGTTT 58.496 29.630 7.89 0.00 34.11 2.83
244 245 7.327275 TCGCGCTATTTAAAATGTTTGTTCATT 59.673 29.630 5.56 0.00 39.35 2.57
245 246 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
246 247 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
258 259 8.472683 TGTTTGTTCATTTGTTTAGACCAAAG 57.527 30.769 0.00 0.00 35.45 2.77
259 260 8.091449 TGTTTGTTCATTTGTTTAGACCAAAGT 58.909 29.630 0.00 0.00 35.45 2.66
260 261 8.592155 GTTTGTTCATTTGTTTAGACCAAAGTC 58.408 33.333 0.00 0.00 43.89 3.01
272 273 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
273 274 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
274 275 2.413453 CCAAAGTCTCTTAGCGCAAGAC 59.587 50.000 11.47 16.26 38.39 3.01
276 277 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
277 278 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
278 279 2.300437 AGTCTCTTAGCGCAAGACCTTT 59.700 45.455 21.13 7.34 40.21 3.11
279 280 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
280 281 3.067106 TCTCTTAGCGCAAGACCTTTTG 58.933 45.455 11.47 4.34 38.39 2.44
282 283 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
283 284 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
284 285 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
285 286 5.472137 TCTTAGCGCAAGACCTTTTGTAAAT 59.528 36.000 11.47 0.00 38.39 1.40
286 287 3.900941 AGCGCAAGACCTTTTGTAAATG 58.099 40.909 11.47 0.00 43.02 2.32
287 288 2.408368 GCGCAAGACCTTTTGTAAATGC 59.592 45.455 0.30 0.00 43.02 3.56
288 289 2.986479 CGCAAGACCTTTTGTAAATGCC 59.014 45.455 0.00 0.00 43.02 4.40
289 290 3.551863 CGCAAGACCTTTTGTAAATGCCA 60.552 43.478 0.00 0.00 43.02 4.92
290 291 4.568956 GCAAGACCTTTTGTAAATGCCAT 58.431 39.130 0.00 0.00 0.00 4.40
291 292 5.621104 CGCAAGACCTTTTGTAAATGCCATA 60.621 40.000 0.00 0.00 43.02 2.74
292 293 5.807011 GCAAGACCTTTTGTAAATGCCATAG 59.193 40.000 0.00 0.00 0.00 2.23
293 294 5.582689 AGACCTTTTGTAAATGCCATAGC 57.417 39.130 0.00 0.00 40.48 2.97
294 295 4.096382 AGACCTTTTGTAAATGCCATAGCG 59.904 41.667 0.00 0.00 44.31 4.26
295 296 3.761752 ACCTTTTGTAAATGCCATAGCGT 59.238 39.130 0.00 0.00 44.31 5.07
296 297 4.104776 CCTTTTGTAAATGCCATAGCGTG 58.895 43.478 0.00 0.00 44.31 5.34
297 298 2.842208 TTGTAAATGCCATAGCGTGC 57.158 45.000 0.00 0.00 44.31 5.34
299 300 3.186702 TGTAAATGCCATAGCGTGCTA 57.813 42.857 3.73 3.73 44.31 3.49
300 301 3.738982 TGTAAATGCCATAGCGTGCTAT 58.261 40.909 8.54 8.54 44.31 2.97
301 302 4.888917 TGTAAATGCCATAGCGTGCTATA 58.111 39.130 13.65 0.01 44.31 1.31
303 304 2.015736 ATGCCATAGCGTGCTATAGC 57.984 50.000 20.60 20.60 44.31 2.97
305 306 1.337167 TGCCATAGCGTGCTATAGCAG 60.337 52.381 27.54 20.51 44.36 4.24
307 308 5.468395 TGCCATAGCGTGCTATAGCAGAG 62.468 52.174 27.54 23.22 44.36 3.35
319 320 2.516227 TAGCAGAGCTATATCGGGCT 57.484 50.000 0.00 0.00 40.44 5.19
320 321 2.516227 AGCAGAGCTATATCGGGCTA 57.484 50.000 0.00 0.00 36.99 3.93
321 322 3.025322 AGCAGAGCTATATCGGGCTAT 57.975 47.619 0.00 0.00 36.99 2.97
322 323 3.370104 AGCAGAGCTATATCGGGCTATT 58.630 45.455 0.00 0.00 36.99 1.73
323 324 3.772025 AGCAGAGCTATATCGGGCTATTT 59.228 43.478 0.00 0.00 36.99 1.40
326 327 5.724328 CAGAGCTATATCGGGCTATTTGAA 58.276 41.667 0.00 0.00 39.05 2.69
327 328 6.166279 CAGAGCTATATCGGGCTATTTGAAA 58.834 40.000 0.00 0.00 39.05 2.69
328 329 6.091441 CAGAGCTATATCGGGCTATTTGAAAC 59.909 42.308 0.00 0.00 39.05 2.78
329 330 5.865085 AGCTATATCGGGCTATTTGAAACA 58.135 37.500 0.00 0.00 37.00 2.83
330 331 5.934625 AGCTATATCGGGCTATTTGAAACAG 59.065 40.000 0.00 0.00 37.00 3.16
331 332 5.701290 GCTATATCGGGCTATTTGAAACAGT 59.299 40.000 0.00 0.00 0.00 3.55
334 335 2.159382 CGGGCTATTTGAAACAGTGGT 58.841 47.619 0.00 0.00 0.00 4.16
335 336 2.556622 CGGGCTATTTGAAACAGTGGTT 59.443 45.455 0.00 0.00 39.43 3.67
348 349 4.772886 ACAGTGGTTTCAACTCTAACCT 57.227 40.909 0.00 0.00 43.36 3.50
349 350 5.112129 ACAGTGGTTTCAACTCTAACCTT 57.888 39.130 0.00 0.00 43.36 3.50
350 351 5.123936 ACAGTGGTTTCAACTCTAACCTTC 58.876 41.667 0.00 0.00 43.36 3.46
351 352 4.515567 CAGTGGTTTCAACTCTAACCTTCC 59.484 45.833 0.00 0.00 43.36 3.46
353 354 4.275196 GTGGTTTCAACTCTAACCTTCCAC 59.725 45.833 0.00 0.00 43.36 4.02
354 355 3.819337 GGTTTCAACTCTAACCTTCCACC 59.181 47.826 0.00 0.00 40.50 4.61
356 357 3.764237 TCAACTCTAACCTTCCACCAC 57.236 47.619 0.00 0.00 0.00 4.16
357 358 3.314693 TCAACTCTAACCTTCCACCACT 58.685 45.455 0.00 0.00 0.00 4.00
361 362 3.910627 ACTCTAACCTTCCACCACTGATT 59.089 43.478 0.00 0.00 0.00 2.57
362 363 4.351111 ACTCTAACCTTCCACCACTGATTT 59.649 41.667 0.00 0.00 0.00 2.17
363 364 4.651778 TCTAACCTTCCACCACTGATTTG 58.348 43.478 0.00 0.00 0.00 2.32
364 365 2.292828 ACCTTCCACCACTGATTTGG 57.707 50.000 0.00 0.00 43.04 3.28
365 366 1.203050 ACCTTCCACCACTGATTTGGG 60.203 52.381 0.00 0.00 41.49 4.12
366 367 1.075374 CCTTCCACCACTGATTTGGGA 59.925 52.381 0.00 0.00 41.49 4.37
367 368 2.291800 CCTTCCACCACTGATTTGGGAT 60.292 50.000 0.00 0.00 41.49 3.85
368 369 3.434309 CTTCCACCACTGATTTGGGATT 58.566 45.455 0.00 0.00 41.49 3.01
369 370 4.569653 CCTTCCACCACTGATTTGGGATTA 60.570 45.833 0.00 0.00 41.49 1.75
370 371 4.666412 TCCACCACTGATTTGGGATTAA 57.334 40.909 0.00 0.00 41.49 1.40
371 372 5.004361 TCCACCACTGATTTGGGATTAAA 57.996 39.130 0.00 0.00 41.49 1.52
372 373 5.398236 TCCACCACTGATTTGGGATTAAAA 58.602 37.500 0.00 0.00 41.49 1.52
374 375 5.337491 CCACCACTGATTTGGGATTAAAAGG 60.337 44.000 0.00 0.00 41.49 3.11
375 376 5.480073 CACCACTGATTTGGGATTAAAAGGA 59.520 40.000 0.00 0.00 41.49 3.36
376 377 6.155049 CACCACTGATTTGGGATTAAAAGGAT 59.845 38.462 0.00 0.00 41.49 3.24
377 378 6.730507 ACCACTGATTTGGGATTAAAAGGATT 59.269 34.615 0.00 0.00 41.49 3.01
378 379 7.237471 ACCACTGATTTGGGATTAAAAGGATTT 59.763 33.333 0.00 0.00 39.93 2.17
410 539 9.809096 TGTTGTTGTTGTTGTTGTATCATATTT 57.191 25.926 0.00 0.00 0.00 1.40
462 593 7.213678 AGAAAGGAGAATGCATAAGTACTAGC 58.786 38.462 0.00 1.59 0.00 3.42
485 616 6.101150 AGCCAATAGGTCACATATCCAGTTAA 59.899 38.462 0.00 0.00 37.19 2.01
539 670 7.962995 ATAGAGTGATTGGAAGAGAAGTGTA 57.037 36.000 0.00 0.00 0.00 2.90
551 682 6.295349 GGAAGAGAAGTGTATCAAGTCCTTCA 60.295 42.308 0.00 0.00 35.19 3.02
590 721 3.002862 TCGATTGGTGAAAACTTCGGTTG 59.997 43.478 0.00 0.00 38.30 3.77
596 727 3.488553 GGTGAAAACTTCGGTTGTTCCAG 60.489 47.826 0.00 0.00 38.30 3.86
657 788 6.436843 AATATAAGTTTGAGAAGTTGCCGG 57.563 37.500 0.00 0.00 31.14 6.13
658 789 0.668535 AAGTTTGAGAAGTTGCCGGC 59.331 50.000 22.73 22.73 0.00 6.13
659 790 1.082104 GTTTGAGAAGTTGCCGGCG 60.082 57.895 23.90 0.00 0.00 6.46
660 791 2.903547 TTTGAGAAGTTGCCGGCGC 61.904 57.895 23.90 17.51 0.00 6.53
682 813 4.682860 GCGCGGCAGTTTTCTAGTATAATA 59.317 41.667 8.83 0.00 0.00 0.98
725 856 3.423154 GAAAGCGGCGGACAGGTG 61.423 66.667 9.78 0.00 0.00 4.00
730 861 3.803082 CGGCGGACAGGTGCATTG 61.803 66.667 0.00 0.00 0.00 2.82
731 862 4.120331 GGCGGACAGGTGCATTGC 62.120 66.667 0.46 0.46 0.00 3.56
732 863 3.058160 GCGGACAGGTGCATTGCT 61.058 61.111 10.49 0.00 0.00 3.91
733 864 2.629656 GCGGACAGGTGCATTGCTT 61.630 57.895 10.49 0.00 0.00 3.91
814 945 4.498520 CCGTCATCTCGCGGTGCT 62.499 66.667 6.13 0.00 42.73 4.40
815 946 2.407616 CGTCATCTCGCGGTGCTA 59.592 61.111 6.13 0.00 0.00 3.49
816 947 1.008424 CGTCATCTCGCGGTGCTAT 60.008 57.895 6.13 0.00 0.00 2.97
817 948 1.271446 CGTCATCTCGCGGTGCTATG 61.271 60.000 6.13 3.56 0.00 2.23
818 949 0.249073 GTCATCTCGCGGTGCTATGT 60.249 55.000 6.13 0.00 0.00 2.29
819 950 0.459899 TCATCTCGCGGTGCTATGTT 59.540 50.000 6.13 0.00 0.00 2.71
820 951 1.679153 TCATCTCGCGGTGCTATGTTA 59.321 47.619 6.13 0.00 0.00 2.41
821 952 2.296190 TCATCTCGCGGTGCTATGTTAT 59.704 45.455 6.13 0.00 0.00 1.89
822 953 3.504520 TCATCTCGCGGTGCTATGTTATA 59.495 43.478 6.13 0.00 0.00 0.98
823 954 4.157840 TCATCTCGCGGTGCTATGTTATAT 59.842 41.667 6.13 0.00 0.00 0.86
824 955 5.355910 TCATCTCGCGGTGCTATGTTATATA 59.644 40.000 6.13 0.00 0.00 0.86
825 956 5.830000 TCTCGCGGTGCTATGTTATATAT 57.170 39.130 6.13 0.00 0.00 0.86
826 957 5.578776 TCTCGCGGTGCTATGTTATATATG 58.421 41.667 6.13 0.00 0.00 1.78
827 958 4.678622 TCGCGGTGCTATGTTATATATGG 58.321 43.478 6.13 0.00 0.00 2.74
828 959 3.245284 CGCGGTGCTATGTTATATATGGC 59.755 47.826 0.00 0.00 33.24 4.40
829 960 3.245284 GCGGTGCTATGTTATATATGGCG 59.755 47.826 0.00 0.00 35.10 5.69
830 961 3.245284 CGGTGCTATGTTATATATGGCGC 59.755 47.826 0.00 0.00 40.44 6.53
873 1008 5.521906 AAAGATATTCAGAGACAGCGCTA 57.478 39.130 10.99 0.00 0.00 4.26
956 1094 3.756082 TTAACCTGGGCTTGGATCAAT 57.244 42.857 0.00 0.00 0.00 2.57
1007 1145 1.871039 CCTTGACCTAACACACCAACG 59.129 52.381 0.00 0.00 0.00 4.10
1043 1213 1.268386 CGACCACGCGAGATTAGCTAA 60.268 52.381 15.93 8.99 0.00 3.09
1049 1219 3.000674 CACGCGAGATTAGCTAACTTGTG 60.001 47.826 15.93 22.22 0.00 3.33
1052 1222 3.370978 GCGAGATTAGCTAACTTGTGCAA 59.629 43.478 8.70 0.00 0.00 4.08
1053 1223 4.034510 GCGAGATTAGCTAACTTGTGCAAT 59.965 41.667 8.70 0.00 0.00 3.56
1092 1262 4.527038 GCTAGGTAGGCACATATACAAGGA 59.473 45.833 0.00 0.00 0.00 3.36
1097 1267 2.505407 AGGCACATATACAAGGAGCACA 59.495 45.455 0.00 0.00 0.00 4.57
1099 1269 3.270027 GCACATATACAAGGAGCACACA 58.730 45.455 0.00 0.00 0.00 3.72
1181 1351 2.835431 CGGCGGAGGAGGATGACT 60.835 66.667 0.00 0.00 0.00 3.41
1269 1439 6.483307 GGTAAATATGACATGAGCTTGCTGTA 59.517 38.462 0.00 0.00 0.00 2.74
1402 1573 9.845740 ACATATGTTAACATATTCCTGCTTACA 57.154 29.630 30.09 9.29 44.66 2.41
1490 1661 1.805945 CAACTACCTGAGCGACGGC 60.806 63.158 0.00 0.00 40.37 5.68
1602 1773 4.695455 CCATTACCAGTACAACTTCCTGTG 59.305 45.833 0.00 0.00 0.00 3.66
1609 1780 1.680338 ACAACTTCCTGTGTGCCTTC 58.320 50.000 0.00 0.00 0.00 3.46
1612 1783 1.302033 CTTCCTGTGTGCCTTCGCT 60.302 57.895 0.00 0.00 35.36 4.93
1717 1904 9.850628 CTTATATTATTTGCATTCATGTGGAGG 57.149 33.333 0.00 0.00 0.00 4.30
1782 1969 3.636764 GACCAGGAAAGAAAAGAGGCAAA 59.363 43.478 0.00 0.00 0.00 3.68
1801 1988 2.034221 GCGGCCCTGGTTTCTCTT 59.966 61.111 0.00 0.00 0.00 2.85
1810 1997 2.802816 CCTGGTTTCTCTTTCACACTCG 59.197 50.000 0.00 0.00 0.00 4.18
1813 2000 2.801111 GGTTTCTCTTTCACACTCGGAC 59.199 50.000 0.00 0.00 0.00 4.79
1824 2016 4.431809 TCACACTCGGACTTCGTTTAAAA 58.568 39.130 0.00 0.00 40.32 1.52
1918 2110 3.139077 CCTAATAATGAAGGACGGTGGC 58.861 50.000 0.00 0.00 34.58 5.01
1924 2116 1.344065 TGAAGGACGGTGGCTTCTTA 58.656 50.000 0.00 0.00 0.00 2.10
1957 2153 0.516877 CGCGGTGCATTCTCTGAAAA 59.483 50.000 0.00 0.00 0.00 2.29
1961 2157 3.989817 GCGGTGCATTCTCTGAAAATTTT 59.010 39.130 2.28 2.28 0.00 1.82
2033 2237 7.694886 TGTCTTATACACTTACAGATGTCTCG 58.305 38.462 0.00 0.00 31.43 4.04
2037 2241 6.761099 ATACACTTACAGATGTCTCGTCTT 57.239 37.500 0.00 0.00 0.00 3.01
2206 2424 3.927163 GAGCGCGGACGGGAAAAGA 62.927 63.158 8.83 0.00 40.57 2.52
2244 2462 3.932483 ACGCGTTTCCCCCTCGTT 61.932 61.111 5.58 0.00 0.00 3.85
2246 2464 2.281276 GCGTTTCCCCCTCGTTGT 60.281 61.111 0.00 0.00 0.00 3.32
2352 2590 2.049063 GCGGCTGTTCTCGTCACT 60.049 61.111 0.00 0.00 0.00 3.41
2358 2596 1.871080 CTGTTCTCGTCACTGGCTTT 58.129 50.000 0.00 0.00 0.00 3.51
2423 2663 0.179048 CCATTGTAGCTCCGATGGCA 60.179 55.000 12.32 0.00 33.34 4.92
2579 2821 0.872388 AAAAGCTTCAACCGGCTACG 59.128 50.000 0.00 0.00 37.87 3.51
2655 2899 2.375146 ACCGGTGACAGAAAAAGCTTT 58.625 42.857 6.12 5.69 0.00 3.51
2745 3090 4.682401 ACGAAAAACGAAAAAGTTGCAACT 59.318 33.333 26.36 26.36 45.77 3.16
3576 3931 3.874977 GCCCCAAACGTTTCCCTACTAAT 60.875 47.826 11.37 0.00 0.00 1.73
3577 3932 4.626046 GCCCCAAACGTTTCCCTACTAATA 60.626 45.833 11.37 0.00 0.00 0.98
3593 3948 6.760298 CCTACTAATAACGGTTTTTCTCCCTC 59.240 42.308 0.00 0.00 0.00 4.30
3609 3964 2.628178 TCCCTCTGTGTTATATGAGCCG 59.372 50.000 0.00 0.00 0.00 5.52
3750 4105 2.614734 CGAGTTTTAGGAGGTGAACCCC 60.615 54.545 0.00 0.00 36.42 4.95
3751 4106 1.350019 AGTTTTAGGAGGTGAACCCCG 59.650 52.381 0.00 0.00 36.42 5.73
3820 4307 4.439974 GCAAGTCTGTCATGTGGTTTGAAA 60.440 41.667 0.00 0.00 0.00 2.69
3902 4391 7.540474 TTGTATAGAATCAGATAGTGTCCCC 57.460 40.000 0.00 0.00 0.00 4.81
3903 4392 6.864421 TGTATAGAATCAGATAGTGTCCCCT 58.136 40.000 0.00 0.00 0.00 4.79
3904 4393 6.721668 TGTATAGAATCAGATAGTGTCCCCTG 59.278 42.308 0.00 0.00 0.00 4.45
3905 4394 2.703007 AGAATCAGATAGTGTCCCCTGC 59.297 50.000 0.00 0.00 0.00 4.85
3906 4395 2.180946 ATCAGATAGTGTCCCCTGCA 57.819 50.000 0.00 0.00 0.00 4.41
3907 4396 1.951209 TCAGATAGTGTCCCCTGCAA 58.049 50.000 0.00 0.00 0.00 4.08
3908 4397 2.265367 TCAGATAGTGTCCCCTGCAAA 58.735 47.619 0.00 0.00 0.00 3.68
3909 4398 2.642311 TCAGATAGTGTCCCCTGCAAAA 59.358 45.455 0.00 0.00 0.00 2.44
3910 4399 3.073798 TCAGATAGTGTCCCCTGCAAAAA 59.926 43.478 0.00 0.00 0.00 1.94
3971 4469 1.882311 CTCGACAGTGCAGCTCTCT 59.118 57.895 0.00 0.00 0.00 3.10
4010 4508 1.400494 GAAAAACAGTGTGCGTCCTGT 59.600 47.619 0.00 0.00 43.53 4.00
4089 4587 2.729882 GTCTGTGTAACCATGACGTCAC 59.270 50.000 22.71 7.57 34.36 3.67
4138 4636 4.620332 GCAGAAGAGCTCGCTGGATATATT 60.620 45.833 28.83 8.96 0.00 1.28
4139 4637 5.393569 GCAGAAGAGCTCGCTGGATATATTA 60.394 44.000 28.83 0.00 0.00 0.98
4141 4639 6.094742 CAGAAGAGCTCGCTGGATATATTAGA 59.905 42.308 23.78 0.00 0.00 2.10
4143 4641 6.842437 AGAGCTCGCTGGATATATTAGAAA 57.158 37.500 8.37 0.00 0.00 2.52
4145 4643 7.671302 AGAGCTCGCTGGATATATTAGAAAAA 58.329 34.615 8.37 0.00 0.00 1.94
4146 4644 8.317679 AGAGCTCGCTGGATATATTAGAAAAAT 58.682 33.333 8.37 0.00 0.00 1.82
4148 4646 7.880195 AGCTCGCTGGATATATTAGAAAAATGT 59.120 33.333 0.00 0.00 0.00 2.71
4149 4647 8.171840 GCTCGCTGGATATATTAGAAAAATGTC 58.828 37.037 2.99 0.00 0.00 3.06
4282 4789 7.116376 TGTGTTCGTGCTTTTGAAAAATGTTTA 59.884 29.630 0.00 0.00 0.00 2.01
4284 4791 8.660373 TGTTCGTGCTTTTGAAAAATGTTTATT 58.340 25.926 0.00 0.00 0.00 1.40
4520 5034 8.830201 ATGTTGATGCATTTTTAAGCTAACAA 57.170 26.923 0.00 0.00 35.36 2.83
4607 5121 3.050275 GGCACTCACGTCAAGCCC 61.050 66.667 6.57 0.00 39.42 5.19
4658 5172 0.808755 CCTTTCTATTGGCGCGGTTT 59.191 50.000 8.83 0.00 0.00 3.27
4677 5191 6.542852 CGGTTTAGTGATAAGTTTGATGTGG 58.457 40.000 0.00 0.00 0.00 4.17
4715 5229 2.167075 GCCTTGGAATTGACCCATTCAG 59.833 50.000 0.00 0.00 34.94 3.02
4718 5232 3.805066 TGGAATTGACCCATTCAGACA 57.195 42.857 0.00 0.00 34.94 3.41
4742 5256 3.256879 ACTGAGATCATATGGGCACTACG 59.743 47.826 2.13 0.00 0.00 3.51
4752 5266 1.206132 TGGGCACTACGACCACTATTG 59.794 52.381 0.00 0.00 0.00 1.90
4776 5290 5.491982 GTGAAGGCAGAAAGAAGGATAAGA 58.508 41.667 0.00 0.00 0.00 2.10
4780 5294 3.118075 GGCAGAAAGAAGGATAAGAGGCT 60.118 47.826 0.00 0.00 0.00 4.58
4782 5296 5.221823 GGCAGAAAGAAGGATAAGAGGCTAT 60.222 44.000 0.00 0.00 0.00 2.97
4827 5341 1.444933 AAACATGACCTGTGGAGGGA 58.555 50.000 0.00 0.00 44.84 4.20
4864 5378 3.048600 TGAGCTAGGGGCATGATACTTT 58.951 45.455 0.00 0.00 44.79 2.66
5024 5539 4.048504 TGAACAGATGCGGTATGTATTCG 58.951 43.478 0.00 0.00 30.65 3.34
5030 5545 5.861787 CAGATGCGGTATGTATTCGTGATTA 59.138 40.000 0.00 0.00 0.00 1.75
5148 5698 2.030185 GGTGTCGTGCTCAAGACTTCTA 60.030 50.000 14.91 0.00 39.89 2.10
5149 5699 3.552273 GGTGTCGTGCTCAAGACTTCTAA 60.552 47.826 14.91 0.00 39.89 2.10
5258 5808 4.481930 TTTGTCAATGTTCTTAGTGGCG 57.518 40.909 0.00 0.00 0.00 5.69
5348 5898 4.685169 ACATACGAAGCAAAATGAGTGG 57.315 40.909 0.00 0.00 0.00 4.00
5369 5919 5.581085 GTGGATCTGCACTCTAAAATACGTT 59.419 40.000 0.00 0.00 0.00 3.99
5484 6034 9.638176 AGAACCATCTTAAATAGAGATGCATTT 57.362 29.630 0.00 0.00 45.80 2.32
5711 6261 5.923733 ACGAGATCAAGAACTACTGGAAT 57.076 39.130 0.00 0.00 31.69 3.01
5786 6336 3.259064 CGAAACCACTGTAACCATCGAT 58.741 45.455 0.00 0.00 0.00 3.59
5932 6485 2.361610 AACATCAAGCCAGGCCGG 60.362 61.111 8.22 9.03 38.11 6.13
6118 6686 0.033699 GAGATGGAGGCCCTGCTTTT 60.034 55.000 3.18 0.00 0.00 2.27
6142 6710 4.771356 CGACGACGACATGCCGGT 62.771 66.667 6.33 0.00 42.66 5.28
6244 6812 2.505982 CCACCTATGGGACCAGCG 59.494 66.667 0.25 0.00 43.04 5.18
6308 6876 2.473760 CGGCTCCGAGTCAGACGAT 61.474 63.158 1.35 0.00 46.01 3.73
6342 6910 1.985116 AGTTGGCTCCTCTCCGACC 60.985 63.158 0.00 0.00 38.50 4.79
6347 6915 2.725312 GCTCCTCTCCGACCATGCA 61.725 63.158 0.00 0.00 0.00 3.96
6365 6933 7.232188 ACCATGCATGATAAGAGAATCAATCT 58.768 34.615 28.31 0.00 39.25 2.40
6401 6970 1.758280 GGAAGATGAATGGCAATGGCA 59.242 47.619 12.96 12.96 43.71 4.92
6454 7023 1.403780 GGACCAACAACGACGAGCTAT 60.404 52.381 0.00 0.00 0.00 2.97
6567 7169 0.663568 CGGTCACCTCTCGTGTGTTC 60.664 60.000 0.00 0.00 43.51 3.18
6605 7208 4.709397 TGAAAACAGTCTCATGGTTTGGTT 59.291 37.500 0.00 0.00 40.14 3.67
6610 7213 4.593206 ACAGTCTCATGGTTTGGTTAGAGA 59.407 41.667 0.00 0.00 0.00 3.10
6627 7230 9.702253 TGGTTAGAGAGATGAATAGTAGTCTTT 57.298 33.333 0.00 0.00 0.00 2.52
6639 7242 9.066892 TGAATAGTAGTCTTTTTGTTGCTGAAT 57.933 29.630 0.00 0.00 0.00 2.57
6756 7361 1.808945 GGAGAACTGCACTGTCAATGG 59.191 52.381 0.00 0.00 0.00 3.16
6766 7371 2.604914 CACTGTCAATGGCTAAGCTACG 59.395 50.000 0.00 0.00 0.00 3.51
6771 7376 0.468648 AATGGCTAAGCTACGGTCCC 59.531 55.000 0.00 0.00 0.00 4.46
6809 7414 5.226396 GCTAAGCTACATATCTGTGTCCAG 58.774 45.833 0.00 0.00 40.25 3.86
6833 7438 1.792367 TGTGAGTTTGATTCTGTCGCG 59.208 47.619 0.00 0.00 0.00 5.87
6839 7444 2.148916 TTGATTCTGTCGCGTGACTT 57.851 45.000 27.76 11.60 45.70 3.01
6870 7475 2.878406 GTTGGGATGGATGTACATTCGG 59.122 50.000 10.30 0.00 0.00 4.30
6928 7533 9.476202 GCATATTTGGGTAACTAATTTGGATTC 57.524 33.333 0.00 0.00 36.70 2.52
6944 7550 1.683385 GATTCCATTTGGTAGCCTGCC 59.317 52.381 0.00 0.00 36.34 4.85
6949 7555 1.272212 CATTTGGTAGCCTGCCGTTTT 59.728 47.619 0.00 0.00 0.00 2.43
6963 7569 5.378292 TGCCGTTTTATGCACTTTCAATA 57.622 34.783 0.00 0.00 31.31 1.90
7044 7658 0.901827 GGGGGCTGGGTTTTTACATG 59.098 55.000 0.00 0.00 0.00 3.21
7061 9493 9.581099 TTTTTACATGGAAAAACTTGTCTCTTC 57.419 29.630 22.10 0.00 34.23 2.87
7062 9494 8.519799 TTTACATGGAAAAACTTGTCTCTTCT 57.480 30.769 0.00 0.00 0.00 2.85
7264 9708 7.710475 AGATTCACGAACAATTTTTGAAATGGT 59.290 29.630 0.00 0.00 30.34 3.55
7266 9710 6.102663 TCACGAACAATTTTTGAAATGGTGT 58.897 32.000 0.00 0.00 0.00 4.16
7269 9713 7.221838 CACGAACAATTTTTGAAATGGTGTACT 59.778 33.333 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.738106 GTCCTTCAGATCTCTTTGAAAATTGAT 58.262 33.333 0.00 0.00 33.30 2.57
14 15 7.941238 AGTCCTTCAGATCTCTTTGAAAATTGA 59.059 33.333 0.00 0.00 33.30 2.57
15 16 8.021973 CAGTCCTTCAGATCTCTTTGAAAATTG 58.978 37.037 0.00 0.00 33.30 2.32
16 17 7.176340 CCAGTCCTTCAGATCTCTTTGAAAATT 59.824 37.037 0.00 0.00 33.30 1.82
17 18 6.658391 CCAGTCCTTCAGATCTCTTTGAAAAT 59.342 38.462 0.00 0.00 33.30 1.82
19 20 5.307976 TCCAGTCCTTCAGATCTCTTTGAAA 59.692 40.000 0.00 0.00 33.30 2.69
21 22 4.420206 TCCAGTCCTTCAGATCTCTTTGA 58.580 43.478 0.00 0.00 0.00 2.69
22 23 4.815533 TCCAGTCCTTCAGATCTCTTTG 57.184 45.455 0.00 0.00 0.00 2.77
24 25 6.843333 TGATATTCCAGTCCTTCAGATCTCTT 59.157 38.462 0.00 0.00 0.00 2.85
25 26 6.380414 TGATATTCCAGTCCTTCAGATCTCT 58.620 40.000 0.00 0.00 0.00 3.10
26 27 6.662865 TGATATTCCAGTCCTTCAGATCTC 57.337 41.667 0.00 0.00 0.00 2.75
27 28 6.786461 TGATGATATTCCAGTCCTTCAGATCT 59.214 38.462 0.00 0.00 0.00 2.75
28 29 7.002250 TGATGATATTCCAGTCCTTCAGATC 57.998 40.000 0.00 0.00 0.00 2.75
29 30 7.384524 TTGATGATATTCCAGTCCTTCAGAT 57.615 36.000 0.00 0.00 0.00 2.90
31 32 7.278135 TCTTTGATGATATTCCAGTCCTTCAG 58.722 38.462 0.00 0.00 0.00 3.02
32 33 7.199167 TCTTTGATGATATTCCAGTCCTTCA 57.801 36.000 0.00 0.00 0.00 3.02
33 34 8.688747 AATCTTTGATGATATTCCAGTCCTTC 57.311 34.615 0.00 0.00 0.00 3.46
35 36 7.882271 GCTAATCTTTGATGATATTCCAGTCCT 59.118 37.037 0.00 0.00 0.00 3.85
36 37 7.120432 GGCTAATCTTTGATGATATTCCAGTCC 59.880 40.741 0.00 0.00 0.00 3.85
39 40 7.991084 TGGCTAATCTTTGATGATATTCCAG 57.009 36.000 0.00 0.00 0.00 3.86
41 42 7.613022 TCCATGGCTAATCTTTGATGATATTCC 59.387 37.037 6.96 0.00 0.00 3.01
42 43 8.571461 TCCATGGCTAATCTTTGATGATATTC 57.429 34.615 6.96 0.00 0.00 1.75
44 45 9.848710 CTATCCATGGCTAATCTTTGATGATAT 57.151 33.333 6.96 0.00 0.00 1.63
45 46 8.270030 CCTATCCATGGCTAATCTTTGATGATA 58.730 37.037 6.96 0.00 0.00 2.15
46 47 7.117397 CCTATCCATGGCTAATCTTTGATGAT 58.883 38.462 6.96 0.00 0.00 2.45
48 49 5.651139 CCCTATCCATGGCTAATCTTTGATG 59.349 44.000 6.96 0.00 0.00 3.07
49 50 5.281401 CCCCTATCCATGGCTAATCTTTGAT 60.281 44.000 6.96 0.00 0.00 2.57
51 52 4.202609 ACCCCTATCCATGGCTAATCTTTG 60.203 45.833 6.96 0.00 0.00 2.77
52 53 3.990245 ACCCCTATCCATGGCTAATCTTT 59.010 43.478 6.96 0.00 0.00 2.52
54 55 2.915604 CACCCCTATCCATGGCTAATCT 59.084 50.000 6.96 0.00 0.00 2.40
55 56 2.619074 GCACCCCTATCCATGGCTAATC 60.619 54.545 6.96 0.00 0.00 1.75
57 58 0.771127 GCACCCCTATCCATGGCTAA 59.229 55.000 6.96 0.00 0.00 3.09
58 59 1.480212 CGCACCCCTATCCATGGCTA 61.480 60.000 6.96 0.00 0.00 3.93
59 60 2.822637 CGCACCCCTATCCATGGCT 61.823 63.158 6.96 0.00 0.00 4.75
60 61 2.281761 CGCACCCCTATCCATGGC 60.282 66.667 6.96 0.00 0.00 4.40
61 62 1.227943 CACGCACCCCTATCCATGG 60.228 63.158 4.97 4.97 0.00 3.66
62 63 1.227943 CCACGCACCCCTATCCATG 60.228 63.158 0.00 0.00 0.00 3.66
66 67 0.252197 AACTTCCACGCACCCCTATC 59.748 55.000 0.00 0.00 0.00 2.08
70 71 0.252197 AGATAACTTCCACGCACCCC 59.748 55.000 0.00 0.00 0.00 4.95
72 73 2.934553 GGTTAGATAACTTCCACGCACC 59.065 50.000 2.96 0.00 36.47 5.01
73 74 3.592059 TGGTTAGATAACTTCCACGCAC 58.408 45.455 2.96 0.00 36.47 5.34
74 75 3.965379 TGGTTAGATAACTTCCACGCA 57.035 42.857 2.96 0.00 36.47 5.24
75 76 4.034048 CACATGGTTAGATAACTTCCACGC 59.966 45.833 0.00 0.00 36.47 5.34
76 77 4.034048 GCACATGGTTAGATAACTTCCACG 59.966 45.833 0.00 0.00 36.47 4.94
79 80 4.523083 TGGCACATGGTTAGATAACTTCC 58.477 43.478 0.00 0.00 36.47 3.46
80 81 5.428253 TCTGGCACATGGTTAGATAACTTC 58.572 41.667 0.00 0.00 38.20 3.01
82 83 5.431765 CTTCTGGCACATGGTTAGATAACT 58.568 41.667 0.00 0.00 38.20 2.24
83 84 4.035675 GCTTCTGGCACATGGTTAGATAAC 59.964 45.833 0.00 0.00 38.20 1.89
84 85 4.199310 GCTTCTGGCACATGGTTAGATAA 58.801 43.478 0.00 0.00 38.20 1.75
85 86 3.808728 GCTTCTGGCACATGGTTAGATA 58.191 45.455 0.00 0.00 38.20 1.98
86 87 2.648059 GCTTCTGGCACATGGTTAGAT 58.352 47.619 0.00 0.00 38.20 1.98
87 88 2.113860 GCTTCTGGCACATGGTTAGA 57.886 50.000 0.00 0.00 38.20 2.10
98 99 1.251251 AACCAACTCATGCTTCTGGC 58.749 50.000 0.00 0.00 42.22 4.85
99 100 2.095567 CGAAACCAACTCATGCTTCTGG 60.096 50.000 0.00 0.00 0.00 3.86
100 101 2.807967 TCGAAACCAACTCATGCTTCTG 59.192 45.455 0.00 0.00 0.00 3.02
101 102 3.070018 CTCGAAACCAACTCATGCTTCT 58.930 45.455 0.00 0.00 0.00 2.85
103 104 3.126001 TCTCGAAACCAACTCATGCTT 57.874 42.857 0.00 0.00 0.00 3.91
104 105 2.839486 TCTCGAAACCAACTCATGCT 57.161 45.000 0.00 0.00 0.00 3.79
106 107 7.095060 CCCATAATATCTCGAAACCAACTCATG 60.095 40.741 0.00 0.00 0.00 3.07
107 108 6.936900 CCCATAATATCTCGAAACCAACTCAT 59.063 38.462 0.00 0.00 0.00 2.90
108 109 6.126883 ACCCATAATATCTCGAAACCAACTCA 60.127 38.462 0.00 0.00 0.00 3.41
109 110 6.289064 ACCCATAATATCTCGAAACCAACTC 58.711 40.000 0.00 0.00 0.00 3.01
110 111 6.248569 ACCCATAATATCTCGAAACCAACT 57.751 37.500 0.00 0.00 0.00 3.16
111 112 6.937436 AACCCATAATATCTCGAAACCAAC 57.063 37.500 0.00 0.00 0.00 3.77
112 113 7.113437 TGAAACCCATAATATCTCGAAACCAA 58.887 34.615 0.00 0.00 0.00 3.67
113 114 6.654959 TGAAACCCATAATATCTCGAAACCA 58.345 36.000 0.00 0.00 0.00 3.67
114 115 7.415229 GTTGAAACCCATAATATCTCGAAACC 58.585 38.462 0.00 0.00 0.00 3.27
115 116 7.415229 GGTTGAAACCCATAATATCTCGAAAC 58.585 38.462 0.36 0.00 43.43 2.78
132 133 7.061027 GCGCTATTTAAAACTTTGGTTGAAAC 58.939 34.615 0.00 0.00 35.63 2.78
133 134 6.074782 CGCGCTATTTAAAACTTTGGTTGAAA 60.075 34.615 5.56 0.00 35.63 2.69
134 135 5.399892 CGCGCTATTTAAAACTTTGGTTGAA 59.600 36.000 5.56 0.00 35.63 2.69
135 136 4.912766 CGCGCTATTTAAAACTTTGGTTGA 59.087 37.500 5.56 0.00 35.63 3.18
136 137 4.432373 GCGCGCTATTTAAAACTTTGGTTG 60.432 41.667 26.67 0.00 35.63 3.77
137 138 3.671459 GCGCGCTATTTAAAACTTTGGTT 59.329 39.130 26.67 0.00 37.24 3.67
138 139 3.057806 AGCGCGCTATTTAAAACTTTGGT 60.058 39.130 35.79 0.63 0.00 3.67
139 140 3.498082 AGCGCGCTATTTAAAACTTTGG 58.502 40.909 35.79 0.00 0.00 3.28
140 141 5.275280 GCTTAGCGCGCTATTTAAAACTTTG 60.275 40.000 38.51 15.49 0.00 2.77
141 142 4.791676 GCTTAGCGCGCTATTTAAAACTTT 59.208 37.500 38.51 13.72 0.00 2.66
142 143 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
143 144 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
144 145 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
145 146 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
146 147 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
147 148 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
148 149 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
151 152 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
153 154 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
154 155 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
158 159 1.560860 CCGGCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
159 160 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
161 162 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
162 163 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
163 164 2.967615 GGTCCGGCGCTAAGATGC 60.968 66.667 7.64 0.00 0.00 3.91
164 165 1.300233 GAGGTCCGGCGCTAAGATG 60.300 63.158 7.64 0.00 0.00 2.90
166 167 2.044252 AGAGGTCCGGCGCTAAGA 60.044 61.111 7.64 0.00 0.00 2.10
168 169 2.044252 AGAGAGGTCCGGCGCTAA 60.044 61.111 7.64 0.00 0.00 3.09
170 171 4.742649 TGAGAGAGGTCCGGCGCT 62.743 66.667 7.64 0.00 0.00 5.92
171 172 2.579684 ATTTGAGAGAGGTCCGGCGC 62.580 60.000 0.00 0.00 0.00 6.53
172 173 0.807667 CATTTGAGAGAGGTCCGGCG 60.808 60.000 0.00 0.00 0.00 6.46
173 174 1.092345 GCATTTGAGAGAGGTCCGGC 61.092 60.000 0.00 0.00 0.00 6.13
174 175 0.539051 AGCATTTGAGAGAGGTCCGG 59.461 55.000 0.00 0.00 0.00 5.14
175 176 3.742433 ATAGCATTTGAGAGAGGTCCG 57.258 47.619 0.00 0.00 0.00 4.79
176 177 4.565022 GCTATAGCATTTGAGAGAGGTCC 58.435 47.826 20.01 0.00 41.59 4.46
178 179 3.639094 ACGCTATAGCATTTGAGAGAGGT 59.361 43.478 23.99 6.60 42.21 3.85
179 180 3.986572 CACGCTATAGCATTTGAGAGAGG 59.013 47.826 23.99 5.98 42.21 3.69
181 182 3.068732 AGCACGCTATAGCATTTGAGAGA 59.931 43.478 23.99 0.00 42.21 3.10
182 183 3.388308 AGCACGCTATAGCATTTGAGAG 58.612 45.455 23.99 7.87 42.21 3.20
184 185 6.566310 CTATAGCACGCTATAGCATTTGAG 57.434 41.667 25.42 9.28 46.26 3.02
193 194 3.687125 AGCTCCACTATAGCACGCTATA 58.313 45.455 15.99 15.99 42.62 1.31
194 195 2.520069 AGCTCCACTATAGCACGCTAT 58.480 47.619 15.45 15.45 42.62 2.97
196 197 1.982660 TAGCTCCACTATAGCACGCT 58.017 50.000 0.00 5.75 42.62 5.07
198 199 4.786927 GCGATATAGCTCCACTATAGCACG 60.787 50.000 0.00 9.20 46.27 5.34
201 202 3.850374 GCGCGATATAGCTCCACTATAGC 60.850 52.174 12.10 0.00 45.02 2.97
202 203 3.562141 AGCGCGATATAGCTCCACTATAG 59.438 47.826 12.10 0.00 45.02 1.31
203 204 3.542648 AGCGCGATATAGCTCCACTATA 58.457 45.455 12.10 0.00 45.70 1.31
204 205 2.370349 AGCGCGATATAGCTCCACTAT 58.630 47.619 12.10 0.00 44.12 2.12
206 207 1.822506 TAGCGCGATATAGCTCCACT 58.177 50.000 12.10 0.00 43.44 4.00
208 209 3.868757 AAATAGCGCGATATAGCTCCA 57.131 42.857 18.33 0.00 43.44 3.86
209 210 6.642683 TTTTAAATAGCGCGATATAGCTCC 57.357 37.500 18.33 0.00 43.44 4.70
210 211 7.676393 ACATTTTAAATAGCGCGATATAGCTC 58.324 34.615 18.33 0.00 43.44 4.09
211 212 7.596749 ACATTTTAAATAGCGCGATATAGCT 57.403 32.000 18.33 7.94 46.53 3.32
215 216 8.850454 AACAAACATTTTAAATAGCGCGATAT 57.150 26.923 11.79 11.79 0.00 1.63
216 217 7.963465 TGAACAAACATTTTAAATAGCGCGATA 59.037 29.630 12.10 9.16 0.00 2.92
217 218 6.804295 TGAACAAACATTTTAAATAGCGCGAT 59.196 30.769 12.10 5.99 0.00 4.58
219 220 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
220 221 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
230 231 9.442047 TTGGTCTAAACAAATGAACAAACATTT 57.558 25.926 0.00 0.00 46.85 2.32
232 233 9.097257 CTTTGGTCTAAACAAATGAACAAACAT 57.903 29.630 0.00 0.00 40.89 2.71
233 234 8.091449 ACTTTGGTCTAAACAAATGAACAAACA 58.909 29.630 0.00 0.00 40.89 2.83
234 235 8.474006 ACTTTGGTCTAAACAAATGAACAAAC 57.526 30.769 0.00 0.00 40.89 2.93
235 236 8.696410 GACTTTGGTCTAAACAAATGAACAAA 57.304 30.769 0.00 0.00 42.70 2.83
251 252 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
252 253 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
253 254 2.413453 GTCTTGCGCTAAGAGACTTTGG 59.587 50.000 18.44 0.00 45.71 3.28
254 255 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
258 259 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
259 260 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
260 261 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
261 262 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
262 263 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
263 264 5.457140 CATTTACAAAAGGTCTTGCGCTAA 58.543 37.500 9.73 0.00 0.00 3.09
264 265 4.614993 GCATTTACAAAAGGTCTTGCGCTA 60.615 41.667 9.73 0.00 0.00 4.26
266 267 2.408368 GCATTTACAAAAGGTCTTGCGC 59.592 45.455 0.00 0.00 0.00 6.09
267 268 2.986479 GGCATTTACAAAAGGTCTTGCG 59.014 45.455 0.00 0.00 32.54 4.85
268 269 3.988819 TGGCATTTACAAAAGGTCTTGC 58.011 40.909 0.00 0.00 0.00 4.01
269 270 5.807011 GCTATGGCATTTACAAAAGGTCTTG 59.193 40.000 4.78 0.00 38.54 3.02
272 273 4.142469 ACGCTATGGCATTTACAAAAGGTC 60.142 41.667 4.78 0.00 38.60 3.85
273 274 3.761752 ACGCTATGGCATTTACAAAAGGT 59.238 39.130 4.78 0.00 38.60 3.50
274 275 4.104776 CACGCTATGGCATTTACAAAAGG 58.895 43.478 4.78 0.00 38.60 3.11
276 277 3.192422 AGCACGCTATGGCATTTACAAAA 59.808 39.130 4.78 0.00 38.60 2.44
277 278 2.752354 AGCACGCTATGGCATTTACAAA 59.248 40.909 4.78 0.00 38.60 2.83
278 279 2.364632 AGCACGCTATGGCATTTACAA 58.635 42.857 4.78 0.00 38.60 2.41
279 280 2.036958 AGCACGCTATGGCATTTACA 57.963 45.000 4.78 0.00 38.60 2.41
280 281 5.456192 CTATAGCACGCTATGGCATTTAC 57.544 43.478 19.48 0.00 39.36 2.01
300 301 2.516227 AGCCCGATATAGCTCTGCTA 57.484 50.000 0.00 1.60 45.55 3.49
301 302 2.516227 TAGCCCGATATAGCTCTGCT 57.484 50.000 0.00 0.00 43.41 4.24
303 304 5.330455 TCAAATAGCCCGATATAGCTCTG 57.670 43.478 0.00 0.00 40.56 3.35
305 306 5.932303 TGTTTCAAATAGCCCGATATAGCTC 59.068 40.000 0.00 0.00 40.56 4.09
307 308 5.701290 ACTGTTTCAAATAGCCCGATATAGC 59.299 40.000 0.00 0.00 0.00 2.97
308 309 6.147821 CCACTGTTTCAAATAGCCCGATATAG 59.852 42.308 0.00 0.00 0.00 1.31
309 310 5.995282 CCACTGTTTCAAATAGCCCGATATA 59.005 40.000 0.00 0.00 0.00 0.86
310 311 4.821805 CCACTGTTTCAAATAGCCCGATAT 59.178 41.667 0.00 0.00 0.00 1.63
311 312 4.196193 CCACTGTTTCAAATAGCCCGATA 58.804 43.478 0.00 0.00 0.00 2.92
313 314 2.224670 ACCACTGTTTCAAATAGCCCGA 60.225 45.455 0.00 0.00 0.00 5.14
314 315 2.159382 ACCACTGTTTCAAATAGCCCG 58.841 47.619 0.00 0.00 0.00 6.13
315 316 4.600692 AAACCACTGTTTCAAATAGCCC 57.399 40.909 0.00 0.00 40.68 5.19
326 327 5.112129 AGGTTAGAGTTGAAACCACTGTT 57.888 39.130 6.97 0.00 46.29 3.16
327 328 4.772886 AGGTTAGAGTTGAAACCACTGT 57.227 40.909 6.97 0.00 46.29 3.55
328 329 4.515567 GGAAGGTTAGAGTTGAAACCACTG 59.484 45.833 6.97 0.00 46.29 3.66
329 330 4.165372 TGGAAGGTTAGAGTTGAAACCACT 59.835 41.667 6.97 0.00 46.29 4.00
330 331 4.275196 GTGGAAGGTTAGAGTTGAAACCAC 59.725 45.833 6.97 0.00 46.29 4.16
331 332 4.457466 GTGGAAGGTTAGAGTTGAAACCA 58.543 43.478 6.97 0.00 46.29 3.67
334 335 4.165372 AGTGGTGGAAGGTTAGAGTTGAAA 59.835 41.667 0.00 0.00 0.00 2.69
335 336 3.714798 AGTGGTGGAAGGTTAGAGTTGAA 59.285 43.478 0.00 0.00 0.00 2.69
337 338 3.071023 TCAGTGGTGGAAGGTTAGAGTTG 59.929 47.826 0.00 0.00 0.00 3.16
340 341 4.559862 AATCAGTGGTGGAAGGTTAGAG 57.440 45.455 0.00 0.00 0.00 2.43
342 343 3.758554 CCAAATCAGTGGTGGAAGGTTAG 59.241 47.826 3.12 0.00 34.05 2.34
344 345 2.597455 CCAAATCAGTGGTGGAAGGTT 58.403 47.619 3.12 0.00 34.05 3.50
345 346 1.203050 CCCAAATCAGTGGTGGAAGGT 60.203 52.381 9.28 0.00 36.90 3.50
346 347 1.075374 TCCCAAATCAGTGGTGGAAGG 59.925 52.381 9.28 0.00 36.90 3.46
348 349 3.541242 AATCCCAAATCAGTGGTGGAA 57.459 42.857 9.28 0.00 36.90 3.53
349 350 4.666412 TTAATCCCAAATCAGTGGTGGA 57.334 40.909 9.28 0.00 36.90 4.02
350 351 5.337491 CCTTTTAATCCCAAATCAGTGGTGG 60.337 44.000 0.00 0.00 36.90 4.61
351 352 5.480073 TCCTTTTAATCCCAAATCAGTGGTG 59.520 40.000 0.00 0.00 36.90 4.17
353 354 6.796785 ATCCTTTTAATCCCAAATCAGTGG 57.203 37.500 0.00 0.00 38.51 4.00
354 355 8.096414 ACAAATCCTTTTAATCCCAAATCAGTG 58.904 33.333 0.00 0.00 0.00 3.66
356 357 8.938906 CAACAAATCCTTTTAATCCCAAATCAG 58.061 33.333 0.00 0.00 0.00 2.90
357 358 8.435982 ACAACAAATCCTTTTAATCCCAAATCA 58.564 29.630 0.00 0.00 0.00 2.57
361 362 7.569240 ACAACAACAAATCCTTTTAATCCCAA 58.431 30.769 0.00 0.00 0.00 4.12
362 363 7.130681 ACAACAACAAATCCTTTTAATCCCA 57.869 32.000 0.00 0.00 0.00 4.37
363 364 7.497579 ACAACAACAACAAATCCTTTTAATCCC 59.502 33.333 0.00 0.00 0.00 3.85
364 365 8.432110 ACAACAACAACAAATCCTTTTAATCC 57.568 30.769 0.00 0.00 0.00 3.01
365 366 9.701355 CAACAACAACAACAAATCCTTTTAATC 57.299 29.630 0.00 0.00 0.00 1.75
366 367 9.225436 ACAACAACAACAACAAATCCTTTTAAT 57.775 25.926 0.00 0.00 0.00 1.40
367 368 8.608844 ACAACAACAACAACAAATCCTTTTAA 57.391 26.923 0.00 0.00 0.00 1.52
368 369 8.499162 CAACAACAACAACAACAAATCCTTTTA 58.501 29.630 0.00 0.00 0.00 1.52
369 370 7.012799 ACAACAACAACAACAACAAATCCTTTT 59.987 29.630 0.00 0.00 0.00 2.27
370 371 6.484977 ACAACAACAACAACAACAAATCCTTT 59.515 30.769 0.00 0.00 0.00 3.11
371 372 5.994668 ACAACAACAACAACAACAAATCCTT 59.005 32.000 0.00 0.00 0.00 3.36
372 373 5.546526 ACAACAACAACAACAACAAATCCT 58.453 33.333 0.00 0.00 0.00 3.24
374 375 6.654122 ACAACAACAACAACAACAACAAATC 58.346 32.000 0.00 0.00 0.00 2.17
375 376 6.610741 ACAACAACAACAACAACAACAAAT 57.389 29.167 0.00 0.00 0.00 2.32
376 377 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
377 378 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
378 379 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
433 564 8.417884 AGTACTTATGCATTCTCCTTTCTCTAC 58.582 37.037 3.54 0.00 0.00 2.59
442 573 5.215252 TGGCTAGTACTTATGCATTCTCC 57.785 43.478 3.54 0.00 0.00 3.71
462 593 7.509546 ACTTAACTGGATATGTGACCTATTGG 58.490 38.462 0.00 0.00 39.83 3.16
518 649 6.634805 TGATACACTTCTCTTCCAATCACTC 58.365 40.000 0.00 0.00 0.00 3.51
525 656 5.087323 AGGACTTGATACACTTCTCTTCCA 58.913 41.667 0.00 0.00 0.00 3.53
642 773 2.903547 GCGCCGGCAACTTCTCAAA 61.904 57.895 28.98 0.00 39.62 2.69
657 788 3.702334 CTAGAAAACTGCCGCGCGC 62.702 63.158 27.36 23.91 38.31 6.86
658 789 1.074319 TACTAGAAAACTGCCGCGCG 61.074 55.000 25.67 25.67 0.00 6.86
659 790 1.287425 ATACTAGAAAACTGCCGCGC 58.713 50.000 0.00 0.00 0.00 6.86
660 791 6.758593 TTATTATACTAGAAAACTGCCGCG 57.241 37.500 0.00 0.00 0.00 6.46
698 829 1.369625 CGCCGCTTTCTTATGAGGTT 58.630 50.000 0.00 0.00 0.00 3.50
732 863 3.283684 CCCAACGTTGCCTCGCAA 61.284 61.111 22.93 0.00 46.80 4.85
733 864 3.758973 TTCCCAACGTTGCCTCGCA 62.759 57.895 22.93 0.01 36.47 5.10
814 945 6.294361 AGACAAGGCGCCATATATAACATA 57.706 37.500 31.54 0.00 0.00 2.29
815 946 5.165961 AGACAAGGCGCCATATATAACAT 57.834 39.130 31.54 0.00 0.00 2.71
816 947 4.617253 AGACAAGGCGCCATATATAACA 57.383 40.909 31.54 0.00 0.00 2.41
817 948 4.378459 GCAAGACAAGGCGCCATATATAAC 60.378 45.833 31.54 8.54 0.00 1.89
818 949 3.751175 GCAAGACAAGGCGCCATATATAA 59.249 43.478 31.54 0.00 0.00 0.98
819 950 3.007940 AGCAAGACAAGGCGCCATATATA 59.992 43.478 31.54 0.00 34.54 0.86
820 951 2.154462 GCAAGACAAGGCGCCATATAT 58.846 47.619 31.54 9.02 0.00 0.86
821 952 1.140852 AGCAAGACAAGGCGCCATATA 59.859 47.619 31.54 0.00 34.54 0.86
822 953 0.107017 AGCAAGACAAGGCGCCATAT 60.107 50.000 31.54 5.27 34.54 1.78
823 954 0.744414 GAGCAAGACAAGGCGCCATA 60.744 55.000 31.54 0.00 34.54 2.74
824 955 2.034687 AGCAAGACAAGGCGCCAT 59.965 55.556 31.54 15.82 34.54 4.40
825 956 2.669569 GAGCAAGACAAGGCGCCA 60.670 61.111 31.54 0.00 34.54 5.69
826 957 2.192608 CTTGAGCAAGACAAGGCGCC 62.193 60.000 21.89 21.89 40.79 6.53
827 958 1.208614 CTTGAGCAAGACAAGGCGC 59.791 57.895 0.00 0.00 40.79 6.53
828 959 1.229428 TTCTTGAGCAAGACAAGGCG 58.771 50.000 12.16 0.00 46.13 5.52
829 960 3.715628 TTTTCTTGAGCAAGACAAGGC 57.284 42.857 12.16 0.00 46.13 4.35
852 983 5.618863 CGATAGCGCTGTCTCTGAATATCTT 60.619 44.000 28.20 0.00 0.00 2.40
856 991 2.226674 CCGATAGCGCTGTCTCTGAATA 59.773 50.000 28.20 1.90 35.83 1.75
974 1112 1.143073 GGTCAAGGGGGCGAATCTTAT 59.857 52.381 0.00 0.00 0.00 1.73
977 1115 0.326238 TAGGTCAAGGGGGCGAATCT 60.326 55.000 0.00 0.00 0.00 2.40
978 1116 0.544697 TTAGGTCAAGGGGGCGAATC 59.455 55.000 0.00 0.00 0.00 2.52
1007 1145 3.311596 GTGGTCGTCCATGTATAAAAGGC 59.688 47.826 4.29 0.00 46.20 4.35
1052 1222 3.074538 CCTAGCTACCCCCAAGCAAATAT 59.925 47.826 0.00 0.00 42.62 1.28
1053 1223 2.441750 CCTAGCTACCCCCAAGCAAATA 59.558 50.000 0.00 0.00 42.62 1.40
1064 1234 1.718280 ATGTGCCTACCTAGCTACCC 58.282 55.000 0.00 0.00 0.00 3.69
1092 1262 0.037882 CCTCTCGTCACATGTGTGCT 60.038 55.000 24.63 0.00 45.25 4.40
1097 1267 0.826715 CCCATCCTCTCGTCACATGT 59.173 55.000 0.00 0.00 0.00 3.21
1099 1269 0.032117 TCCCCATCCTCTCGTCACAT 60.032 55.000 0.00 0.00 0.00 3.21
1181 1351 5.063438 GCTGAGCAATGTATTTCGTGAGTAA 59.937 40.000 0.00 0.00 0.00 2.24
1269 1439 4.453751 TGTGAAAACCCGCTAAAGTAGTT 58.546 39.130 0.00 0.00 0.00 2.24
1354 1525 4.928661 AGTACATGTTCTTCACGAATGC 57.071 40.909 2.30 0.00 33.45 3.56
1400 1571 9.706691 GTAGTATACATAGTTGCATACCAATGT 57.293 33.333 5.50 15.30 42.43 2.71
1490 1661 0.035458 AGAAGTTGCCCCTCTTCACG 59.965 55.000 7.48 0.00 41.46 4.35
1602 1773 3.983741 ACATATCTTCTAGCGAAGGCAC 58.016 45.455 2.09 0.00 45.36 5.01
1717 1904 2.342179 GCTAGAGTTTCTCACACCAGC 58.658 52.381 0.00 0.00 32.06 4.85
1782 1969 4.035102 GAGAAACCAGGGCCGCCT 62.035 66.667 9.86 0.00 0.00 5.52
1801 1988 2.589798 AAACGAAGTCCGAGTGTGAA 57.410 45.000 0.00 0.00 45.00 3.18
1810 1997 4.913345 CCAACCGAATTTTAAACGAAGTCC 59.087 41.667 0.00 0.00 45.00 3.85
1813 2000 4.609708 CGTCCAACCGAATTTTAAACGAAG 59.390 41.667 0.00 0.00 0.00 3.79
1824 2016 0.399075 AACCCTTCGTCCAACCGAAT 59.601 50.000 0.00 0.00 44.93 3.34
1939 2135 2.927553 ATTTTCAGAGAATGCACCGC 57.072 45.000 0.00 0.00 0.00 5.68
1946 2142 9.075678 AGATGACAGACAAAATTTTCAGAGAAT 57.924 29.630 0.00 0.00 0.00 2.40
1957 2153 9.182214 AGTGCAAATATAGATGACAGACAAAAT 57.818 29.630 0.00 0.00 0.00 1.82
1961 2157 5.525012 GCAGTGCAAATATAGATGACAGACA 59.475 40.000 11.09 0.00 0.00 3.41
1981 2177 2.548480 GCTTTTACTCGAACTTGGCAGT 59.452 45.455 0.00 0.00 33.11 4.40
2022 2226 5.767665 AGCTATATGAAGACGAGACATCTGT 59.232 40.000 0.00 0.00 0.00 3.41
2033 2237 5.574830 CCAAGTCGCATAGCTATATGAAGAC 59.425 44.000 5.77 10.76 42.55 3.01
2037 2241 5.710567 AGTACCAAGTCGCATAGCTATATGA 59.289 40.000 5.77 4.47 41.22 2.15
2423 2663 1.006102 CCAGTGAGCTTCGGTCGTT 60.006 57.895 0.00 0.00 32.15 3.85
2579 2821 5.475564 TGGTATACTGGTTGAAGCTTTTTCC 59.524 40.000 0.00 4.14 0.00 3.13
2711 3055 3.139850 TCGTTTTTCGTCCATGGCTTTA 58.860 40.909 6.96 0.00 40.80 1.85
2745 3090 5.335035 GCGGTTGTAACTTTTATAACTGCCA 60.335 40.000 20.37 0.00 43.99 4.92
3445 3800 4.508128 CGCGCCGCCCTCTTCTTA 62.508 66.667 2.28 0.00 0.00 2.10
3576 3931 3.135167 ACACAGAGGGAGAAAAACCGTTA 59.865 43.478 0.00 0.00 0.00 3.18
3577 3932 2.092592 ACACAGAGGGAGAAAAACCGTT 60.093 45.455 0.00 0.00 0.00 4.44
3593 3948 3.780902 TCACACGGCTCATATAACACAG 58.219 45.455 0.00 0.00 0.00 3.66
3609 3964 4.213482 GGGCGGAAATAATCACTATCACAC 59.787 45.833 0.00 0.00 0.00 3.82
3750 4105 7.827701 TCATCTAGTCAGTTTATAATAGGCCG 58.172 38.462 0.00 0.00 0.00 6.13
3885 4374 2.435805 TGCAGGGGACACTATCTGATTC 59.564 50.000 0.00 0.00 0.00 2.52
3910 4399 5.643777 CCGGTGACACTATCTGATTCTTTTT 59.356 40.000 5.39 0.00 0.00 1.94
3911 4400 5.178797 CCGGTGACACTATCTGATTCTTTT 58.821 41.667 5.39 0.00 0.00 2.27
3912 4401 4.759782 CCGGTGACACTATCTGATTCTTT 58.240 43.478 5.39 0.00 0.00 2.52
3913 4402 3.430929 GCCGGTGACACTATCTGATTCTT 60.431 47.826 1.90 0.00 0.00 2.52
3914 4403 2.101582 GCCGGTGACACTATCTGATTCT 59.898 50.000 1.90 0.00 0.00 2.40
3915 4404 2.101582 AGCCGGTGACACTATCTGATTC 59.898 50.000 1.90 0.00 0.00 2.52
3916 4405 2.101582 GAGCCGGTGACACTATCTGATT 59.898 50.000 1.90 0.00 0.00 2.57
3917 4406 1.683917 GAGCCGGTGACACTATCTGAT 59.316 52.381 1.90 0.00 0.00 2.90
3918 4407 1.103803 GAGCCGGTGACACTATCTGA 58.896 55.000 1.90 0.00 0.00 3.27
3919 4408 0.817654 TGAGCCGGTGACACTATCTG 59.182 55.000 1.90 0.00 0.00 2.90
3920 4409 1.557099 TTGAGCCGGTGACACTATCT 58.443 50.000 1.90 0.00 0.00 1.98
3921 4410 2.000447 GTTTGAGCCGGTGACACTATC 59.000 52.381 1.90 0.00 0.00 2.08
3922 4411 1.623811 AGTTTGAGCCGGTGACACTAT 59.376 47.619 1.90 0.00 0.00 2.12
3923 4412 1.045407 AGTTTGAGCCGGTGACACTA 58.955 50.000 1.90 0.00 0.00 2.74
3924 4413 0.180406 AAGTTTGAGCCGGTGACACT 59.820 50.000 1.90 0.00 0.00 3.55
3925 4414 1.529865 GTAAGTTTGAGCCGGTGACAC 59.470 52.381 1.90 0.00 0.00 3.67
3926 4415 1.139256 TGTAAGTTTGAGCCGGTGACA 59.861 47.619 1.90 0.00 0.00 3.58
3971 4469 2.439409 TCGTGAGATAGTGAACGGGAA 58.561 47.619 0.00 0.00 36.70 3.97
4053 4551 9.620660 GGTTACACAGACGAATTAAATTGATTT 57.379 29.630 0.00 0.00 0.00 2.17
4089 4587 7.537715 TGAAAAAGCATAACTACATGTGGATG 58.462 34.615 16.98 10.94 35.49 3.51
4159 4657 2.930040 CGGACCACTAGTTGCATAGTTG 59.070 50.000 0.00 0.00 33.68 3.16
4161 4659 2.176889 ACGGACCACTAGTTGCATAGT 58.823 47.619 0.00 0.00 36.41 2.12
4297 4804 9.102757 ACAAACATTATAAAATGCACAAACACA 57.897 25.926 0.00 0.00 45.41 3.72
4417 4927 4.486090 ACATTGTTTTAACACGCAACACA 58.514 34.783 0.00 0.00 38.92 3.72
4451 4962 4.527509 TTTTTGGAATCGCATGGCTTTA 57.472 36.364 0.00 0.00 0.00 1.85
4520 5034 7.812669 CCAATACTCCAACTCGCTTTTAAATTT 59.187 33.333 0.00 0.00 0.00 1.82
4644 5158 1.647346 TCACTAAACCGCGCCAATAG 58.353 50.000 0.00 2.66 0.00 1.73
4658 5172 5.496556 CACCCCACATCAAACTTATCACTA 58.503 41.667 0.00 0.00 0.00 2.74
4677 5191 2.189499 GCGATGATCTTGGCCACCC 61.189 63.158 3.88 0.00 0.00 4.61
4715 5229 3.181462 TGCCCATATGATCTCAGTGTGTC 60.181 47.826 3.65 0.00 0.00 3.67
4718 5232 3.044156 AGTGCCCATATGATCTCAGTGT 58.956 45.455 3.65 0.00 0.00 3.55
4730 5244 2.440517 TAGTGGTCGTAGTGCCCATA 57.559 50.000 0.00 0.00 0.00 2.74
4752 5266 2.568623 TCCTTCTTTCTGCCTTCACC 57.431 50.000 0.00 0.00 0.00 4.02
4776 5290 0.676736 GCGCTCCTCTTGTATAGCCT 59.323 55.000 0.00 0.00 0.00 4.58
4780 5294 2.039418 ACATGGCGCTCCTCTTGTATA 58.961 47.619 7.64 0.00 0.00 1.47
4782 5296 0.613260 AACATGGCGCTCCTCTTGTA 59.387 50.000 7.64 0.00 0.00 2.41
5059 5609 7.093771 GGTGGACCTGATCTTGTTTAAAATCAT 60.094 37.037 1.73 0.00 0.00 2.45
5148 5698 4.348863 ACTGAGCATTCTGAGTGAGTTT 57.651 40.909 4.17 0.00 35.42 2.66
5192 5742 4.347583 TCCAGGGCTCTACTAGACTACTAC 59.652 50.000 0.00 0.00 31.67 2.73
5258 5808 5.394773 GGGAGTACTTCAGAAGATCCTCAAC 60.395 48.000 17.56 10.42 33.09 3.18
5348 5898 7.061752 ACAAACGTATTTTAGAGTGCAGATC 57.938 36.000 0.00 0.00 0.00 2.75
5398 5948 6.305693 ACTGTTCTTCATTGTTACTCAAGC 57.694 37.500 0.00 0.00 39.55 4.01
5484 6034 9.182214 AGAGTCGTATAACTACTTGTATTCCAA 57.818 33.333 0.00 0.00 0.00 3.53
5491 6041 6.654161 ACAGTCAGAGTCGTATAACTACTTGT 59.346 38.462 0.00 0.00 0.00 3.16
5617 6167 2.113860 TCCAAGAAGGTGCATGCTAC 57.886 50.000 20.33 14.70 39.02 3.58
5786 6336 3.637714 GCGGAAAGCTTGTCGACA 58.362 55.556 15.76 15.76 44.04 4.35
5842 6392 3.197790 CGGGCTGCATCTTCGTGG 61.198 66.667 0.50 0.00 0.00 4.94
5865 6415 1.153756 CCTTGGACTTGGTGGGCTT 59.846 57.895 0.00 0.00 0.00 4.35
5897 6447 4.265904 TGTTGTCGATATGGTGTTGACT 57.734 40.909 0.00 0.00 32.35 3.41
5901 6451 4.094887 GCTTGATGTTGTCGATATGGTGTT 59.905 41.667 0.00 0.00 0.00 3.32
5936 6489 3.637273 GGTTGCTGGTCCCGGTCT 61.637 66.667 0.00 0.00 0.00 3.85
6118 6686 2.186433 GCATGTCGTCGTCGATGCATA 61.186 52.381 20.38 6.03 45.50 3.14
6308 6876 2.543031 CCAACTGACAAACGACTCGAGA 60.543 50.000 21.68 0.00 0.00 4.04
6342 6910 9.654663 TCTAGATTGATTCTCTTATCATGCATG 57.345 33.333 21.07 21.07 34.67 4.06
6365 6933 5.726308 TCATCTTCCTCTTTGGGATGTTCTA 59.274 40.000 0.00 0.00 36.50 2.10
6401 6970 3.268647 AAGGACCCTCCCCATCGGT 62.269 63.158 0.00 0.00 37.19 4.69
6567 7169 8.960591 AGACTGTTTTCATGGTTTATATTCAGG 58.039 33.333 0.00 0.00 0.00 3.86
6610 7213 8.725148 CAGCAACAAAAAGACTACTATTCATCT 58.275 33.333 0.00 0.00 0.00 2.90
6639 7242 5.473504 GCAGGTTCTTTACTTCTTTGATGGA 59.526 40.000 0.00 0.00 0.00 3.41
6695 7300 2.226437 CGAGATGTTGTTTCCTGTTGGG 59.774 50.000 0.00 0.00 0.00 4.12
6697 7302 2.878406 ACCGAGATGTTGTTTCCTGTTG 59.122 45.455 0.00 0.00 0.00 3.33
6709 7314 1.827399 AAGCAACGGGACCGAGATGT 61.827 55.000 18.80 0.00 42.83 3.06
6756 7361 1.396653 TACAGGGACCGTAGCTTAGC 58.603 55.000 0.00 0.00 0.00 3.09
6766 7371 2.094906 GCCATTTTCGTTTACAGGGACC 60.095 50.000 0.00 0.00 0.00 4.46
6771 7376 5.296813 AGCTTAGCCATTTTCGTTTACAG 57.703 39.130 0.00 0.00 0.00 2.74
6809 7414 4.437820 GCGACAGAATCAAACTCACAAAAC 59.562 41.667 0.00 0.00 0.00 2.43
6833 7438 0.304705 CAACACAGCCGACAAGTCAC 59.695 55.000 0.72 0.00 0.00 3.67
6839 7444 1.302431 CATCCCAACACAGCCGACA 60.302 57.895 0.00 0.00 0.00 4.35
6889 7494 3.243168 CCAAATATGCACAGGTCAATCGG 60.243 47.826 0.00 0.00 0.00 4.18
6928 7533 0.965363 AACGGCAGGCTACCAAATGG 60.965 55.000 4.31 0.00 42.17 3.16
6963 7569 9.190317 GAGGAAGACAAGGGTTAAATTGATATT 57.810 33.333 3.96 0.00 0.00 1.28
6973 7579 6.008696 TCTTTTTGAGGAAGACAAGGGTTA 57.991 37.500 0.00 0.00 0.00 2.85
7023 7629 0.563672 TGTAAAAACCCAGCCCCCTT 59.436 50.000 0.00 0.00 0.00 3.95
7044 7658 5.917447 GCATCAAGAAGAGACAAGTTTTTCC 59.083 40.000 0.00 0.00 0.00 3.13
7061 9493 4.625028 TCCGATGTATCTTCTGCATCAAG 58.375 43.478 0.00 0.00 44.59 3.02
7062 9494 4.625028 CTCCGATGTATCTTCTGCATCAA 58.375 43.478 0.00 0.00 44.59 2.57
7116 9548 4.071961 TCGTTGCATCAATAGCAGGTAT 57.928 40.909 0.00 0.00 43.75 2.73
7301 9745 9.874205 ATTCAAGAATTTCAAGAAAACTTCACA 57.126 25.926 12.13 4.47 32.82 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.