Multiple sequence alignment - TraesCS1B01G048500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G048500 chr1B 100.000 4507 0 0 1 4507 28482543 28487049 0.000000e+00 8323.0
1 TraesCS1B01G048500 chr1B 86.640 2949 319 35 859 3776 28325017 28322113 0.000000e+00 3193.0
2 TraesCS1B01G048500 chr1B 83.870 3447 389 86 644 4007 28309047 28305685 0.000000e+00 3131.0
3 TraesCS1B01G048500 chr1B 87.415 2344 257 23 1189 3505 28445634 28443302 0.000000e+00 2660.0
4 TraesCS1B01G048500 chr1B 88.971 136 7 5 679 811 28325166 28325036 1.300000e-35 161.0
5 TraesCS1B01G048500 chr1D 93.618 3165 164 21 618 3752 19021941 19025097 0.000000e+00 4691.0
6 TraesCS1B01G048500 chr1D 86.083 2982 302 49 617 3516 19003069 19000119 0.000000e+00 3103.0
7 TraesCS1B01G048500 chr1D 86.328 2655 289 34 963 3576 19021005 19018384 0.000000e+00 2824.0
8 TraesCS1B01G048500 chr1D 86.312 1768 184 28 1100 2854 19043705 19045427 0.000000e+00 1871.0
9 TraesCS1B01G048500 chr1D 92.677 437 25 5 3867 4303 19034707 19035136 1.380000e-174 623.0
10 TraesCS1B01G048500 chr1D 89.254 335 35 1 4 337 479222846 479222512 6.970000e-113 418.0
11 TraesCS1B01G048500 chr1D 90.541 148 11 1 4301 4445 19037875 19038022 4.600000e-45 193.0
12 TraesCS1B01G048500 chr1D 82.692 156 12 5 616 756 19043344 19043499 1.700000e-24 124.0
13 TraesCS1B01G048500 chr1D 78.571 196 30 6 347 530 277995099 277995294 7.920000e-23 119.0
14 TraesCS1B01G048500 chr1D 100.000 36 0 0 3763 3798 19034532 19034567 2.910000e-07 67.6
15 TraesCS1B01G048500 chr1A 92.755 2871 172 19 946 3798 20935346 20938198 0.000000e+00 4117.0
16 TraesCS1B01G048500 chr1A 86.208 2632 288 35 987 3576 20932659 20930061 0.000000e+00 2780.0
17 TraesCS1B01G048500 chr1A 78.982 609 49 30 3867 4445 20940867 20941426 4.320000e-90 342.0
18 TraesCS1B01G048500 chr1A 89.041 146 10 5 3855 3999 20938372 20938512 4.630000e-40 176.0
19 TraesCS1B01G048500 chr5B 84.959 2819 316 52 960 3727 641822012 641824773 0.000000e+00 2758.0
20 TraesCS1B01G048500 chr5B 85.911 2548 297 35 942 3441 641833108 641835641 0.000000e+00 2660.0
21 TraesCS1B01G048500 chr5B 89.056 466 39 6 3991 4445 641810615 641810151 6.540000e-158 568.0
22 TraesCS1B01G048500 chr5B 80.676 621 76 23 3 582 108839779 108840396 4.140000e-120 442.0
23 TraesCS1B01G048500 chr5B 80.989 263 34 8 995 1244 641816316 641816057 1.280000e-45 195.0
24 TraesCS1B01G048500 chr2B 84.676 2780 360 45 987 3731 564920646 564923394 0.000000e+00 2713.0
25 TraesCS1B01G048500 chr2B 82.902 193 24 2 347 530 200072282 200072474 1.000000e-36 165.0
26 TraesCS1B01G048500 chr2B 84.426 122 9 4 347 459 582650123 582650243 1.330000e-20 111.0
27 TraesCS1B01G048500 chr2D 85.286 2671 339 36 1085 3731 481599547 481602187 0.000000e+00 2706.0
28 TraesCS1B01G048500 chr2D 89.911 337 32 2 2 337 587783554 587783219 2.490000e-117 433.0
29 TraesCS1B01G048500 chr2D 89.521 334 30 3 3 336 69499441 69499113 6.970000e-113 418.0
30 TraesCS1B01G048500 chr2A 84.503 2749 362 41 987 3698 624359382 624362103 0.000000e+00 2658.0
31 TraesCS1B01G048500 chr7D 91.045 335 30 0 3 337 431373771 431374105 1.910000e-123 453.0
32 TraesCS1B01G048500 chr3D 90.149 335 33 0 3 337 90347386 90347052 1.930000e-118 436.0
33 TraesCS1B01G048500 chr3D 79.793 193 30 4 347 530 568623982 568623790 1.020000e-26 132.0
34 TraesCS1B01G048500 chr6B 89.254 335 36 0 3 337 521471514 521471180 1.940000e-113 420.0
35 TraesCS1B01G048500 chrUn 89.222 334 31 4 5 337 332273359 332273688 3.240000e-111 412.0
36 TraesCS1B01G048500 chr4B 89.222 334 31 4 5 337 643574217 643574546 3.240000e-111 412.0
37 TraesCS1B01G048500 chr3B 83.333 162 16 8 337 489 506968288 506968447 6.080000e-29 139.0
38 TraesCS1B01G048500 chr4A 77.642 246 41 10 347 579 626547821 626547577 2.190000e-28 137.0
39 TraesCS1B01G048500 chr4A 78.646 192 31 4 347 530 6494489 6494678 7.920000e-23 119.0
40 TraesCS1B01G048500 chr6D 79.688 192 28 5 347 528 311804663 311804853 1.320000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G048500 chr1B 28482543 28487049 4506 False 8323.000000 8323 100.0000 1 4507 1 chr1B.!!$F1 4506
1 TraesCS1B01G048500 chr1B 28305685 28309047 3362 True 3131.000000 3131 83.8700 644 4007 1 chr1B.!!$R1 3363
2 TraesCS1B01G048500 chr1B 28443302 28445634 2332 True 2660.000000 2660 87.4150 1189 3505 1 chr1B.!!$R2 2316
3 TraesCS1B01G048500 chr1B 28322113 28325166 3053 True 1677.000000 3193 87.8055 679 3776 2 chr1B.!!$R3 3097
4 TraesCS1B01G048500 chr1D 19021941 19025097 3156 False 4691.000000 4691 93.6180 618 3752 1 chr1D.!!$F1 3134
5 TraesCS1B01G048500 chr1D 19000119 19003069 2950 True 3103.000000 3103 86.0830 617 3516 1 chr1D.!!$R1 2899
6 TraesCS1B01G048500 chr1D 19018384 19021005 2621 True 2824.000000 2824 86.3280 963 3576 1 chr1D.!!$R2 2613
7 TraesCS1B01G048500 chr1D 19043344 19045427 2083 False 997.500000 1871 84.5020 616 2854 2 chr1D.!!$F4 2238
8 TraesCS1B01G048500 chr1D 19034532 19038022 3490 False 294.533333 623 94.4060 3763 4445 3 chr1D.!!$F3 682
9 TraesCS1B01G048500 chr1A 20930061 20932659 2598 True 2780.000000 2780 86.2080 987 3576 1 chr1A.!!$R1 2589
10 TraesCS1B01G048500 chr1A 20935346 20941426 6080 False 1545.000000 4117 86.9260 946 4445 3 chr1A.!!$F1 3499
11 TraesCS1B01G048500 chr5B 641822012 641824773 2761 False 2758.000000 2758 84.9590 960 3727 1 chr5B.!!$F2 2767
12 TraesCS1B01G048500 chr5B 641833108 641835641 2533 False 2660.000000 2660 85.9110 942 3441 1 chr5B.!!$F3 2499
13 TraesCS1B01G048500 chr5B 108839779 108840396 617 False 442.000000 442 80.6760 3 582 1 chr5B.!!$F1 579
14 TraesCS1B01G048500 chr2B 564920646 564923394 2748 False 2713.000000 2713 84.6760 987 3731 1 chr2B.!!$F2 2744
15 TraesCS1B01G048500 chr2D 481599547 481602187 2640 False 2706.000000 2706 85.2860 1085 3731 1 chr2D.!!$F1 2646
16 TraesCS1B01G048500 chr2A 624359382 624362103 2721 False 2658.000000 2658 84.5030 987 3698 1 chr2A.!!$F1 2711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.036875 CAGAGGACAGGGGGTTGAAC 59.963 60.0 0.00 0.0 0.0 3.18 F
465 498 0.037605 GTCTGGGGTGTCGAATTCGT 60.038 55.0 25.93 0.0 40.8 3.85 F
1822 2122 0.512952 CTCCAAACTTCTCAACGCCG 59.487 55.0 0.00 0.0 0.0 6.46 F
2958 3264 0.323451 TCTGCGAGAAGGACCTGCTA 60.323 55.0 0.33 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 2104 0.105224 TCGGCGTTGAGAAGTTTGGA 59.895 50.000 6.85 0.0 0.00 3.53 R
2190 2496 1.617536 AGCCTCAATCTGCCCAGGA 60.618 57.895 0.00 0.0 0.00 3.86 R
3197 3503 0.108138 GGTGATACGGTTCTGCTGCT 60.108 55.000 0.00 0.0 0.00 4.24 R
3829 4341 0.642291 CGTGTTGATGTCTAGCAGCG 59.358 55.000 0.00 0.0 36.02 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.247736 GGTTGAGCACTCGATGACCT 59.752 55.000 0.00 0.00 0.00 3.85
34 35 1.996191 GAGCACTCGATGACCTTTGAC 59.004 52.381 0.00 0.00 0.00 3.18
49 50 2.286365 TTGACCGAGCCCTTGAAATT 57.714 45.000 0.00 0.00 0.00 1.82
110 111 2.278792 TGCATCATCGCCGTCTCG 60.279 61.111 0.00 0.00 0.00 4.04
113 114 1.064134 CATCATCGCCGTCTCGTCA 59.936 57.895 0.00 0.00 0.00 4.35
114 115 0.525455 CATCATCGCCGTCTCGTCAA 60.525 55.000 0.00 0.00 0.00 3.18
121 122 1.615502 GCCGTCTCGTCAAAGTACTC 58.384 55.000 0.00 0.00 0.00 2.59
128 129 2.082231 TCGTCAAAGTACTCCTCCTCG 58.918 52.381 0.00 0.00 0.00 4.63
129 130 1.811359 CGTCAAAGTACTCCTCCTCGT 59.189 52.381 0.00 0.00 0.00 4.18
168 169 5.131067 AGGACTCAACATACTGCTCGTATA 58.869 41.667 0.03 0.00 36.69 1.47
176 177 7.444487 TCAACATACTGCTCGTATATGTACTCT 59.556 37.037 0.00 0.00 38.33 3.24
196 197 6.591935 ACTCTAAATCGGAATCCATTGCTAA 58.408 36.000 0.00 0.00 0.00 3.09
198 199 7.556275 ACTCTAAATCGGAATCCATTGCTAAAA 59.444 33.333 0.00 0.00 0.00 1.52
199 200 8.287439 TCTAAATCGGAATCCATTGCTAAAAA 57.713 30.769 0.00 0.00 0.00 1.94
200 201 8.188139 TCTAAATCGGAATCCATTGCTAAAAAC 58.812 33.333 0.00 0.00 0.00 2.43
203 204 6.279513 TCGGAATCCATTGCTAAAAACAAT 57.720 33.333 0.00 0.00 38.25 2.71
215 216 8.466617 TTGCTAAAAACAATAAGGGACAACTA 57.533 30.769 0.00 0.00 0.00 2.24
216 217 8.644374 TGCTAAAAACAATAAGGGACAACTAT 57.356 30.769 0.00 0.00 0.00 2.12
229 230 3.335579 GACAACTATTTTCAGCTCCGGT 58.664 45.455 0.00 0.00 0.00 5.28
240 241 0.103208 AGCTCCGGTGATTCATCGAC 59.897 55.000 20.52 9.45 40.81 4.20
247 248 1.398390 GGTGATTCATCGACCAGTTGC 59.602 52.381 0.00 0.00 32.12 4.17
255 256 3.443045 GACCAGTTGCCGGGCATG 61.443 66.667 24.49 18.74 38.76 4.06
274 275 1.649633 TGGTAGAGGATGGTACCTGGT 59.350 52.381 14.36 4.05 40.73 4.00
275 276 2.860679 TGGTAGAGGATGGTACCTGGTA 59.139 50.000 14.36 1.49 40.73 3.25
284 285 1.683365 GTACCTGGTAGGGCGGTCA 60.683 63.158 6.84 0.00 40.58 4.02
302 303 0.036875 CAGAGGACAGGGGGTTGAAC 59.963 60.000 0.00 0.00 0.00 3.18
303 304 1.003718 GAGGACAGGGGGTTGAACG 60.004 63.158 0.00 0.00 0.00 3.95
308 309 1.057851 ACAGGGGGTTGAACGGAGAA 61.058 55.000 0.00 0.00 0.00 2.87
309 310 0.109723 CAGGGGGTTGAACGGAGAAA 59.890 55.000 0.00 0.00 0.00 2.52
313 314 1.346722 GGGGTTGAACGGAGAAAGAGA 59.653 52.381 0.00 0.00 0.00 3.10
317 318 4.563786 GGGTTGAACGGAGAAAGAGAAGAT 60.564 45.833 0.00 0.00 0.00 2.40
322 323 2.234908 ACGGAGAAAGAGAAGATGTGGG 59.765 50.000 0.00 0.00 0.00 4.61
339 340 3.483869 GGGGGAGCCCTGCTGTAG 61.484 72.222 5.38 0.00 44.66 2.74
340 341 2.689034 GGGGAGCCCTGCTGTAGT 60.689 66.667 5.38 0.00 39.88 2.73
342 343 2.586792 GGAGCCCTGCTGTAGTGG 59.413 66.667 0.00 0.00 39.88 4.00
343 344 1.990060 GGAGCCCTGCTGTAGTGGA 60.990 63.158 0.00 0.00 39.88 4.02
345 346 2.124942 GCCCTGCTGTAGTGGAGC 60.125 66.667 4.86 0.00 36.95 4.70
346 347 2.185350 CCCTGCTGTAGTGGAGCG 59.815 66.667 0.00 0.00 39.47 5.03
347 348 2.650116 CCCTGCTGTAGTGGAGCGT 61.650 63.158 0.00 0.00 39.47 5.07
349 350 1.446792 CTGCTGTAGTGGAGCGTGG 60.447 63.158 0.00 0.00 39.47 4.94
350 351 1.877576 CTGCTGTAGTGGAGCGTGGA 61.878 60.000 0.00 0.00 39.47 4.02
395 428 1.341606 GGCGACGACAAGAGAGAAAG 58.658 55.000 0.00 0.00 0.00 2.62
396 429 1.341606 GCGACGACAAGAGAGAAAGG 58.658 55.000 0.00 0.00 0.00 3.11
397 430 1.068472 GCGACGACAAGAGAGAAAGGA 60.068 52.381 0.00 0.00 0.00 3.36
398 431 2.857618 CGACGACAAGAGAGAAAGGAG 58.142 52.381 0.00 0.00 0.00 3.69
399 432 2.484651 CGACGACAAGAGAGAAAGGAGA 59.515 50.000 0.00 0.00 0.00 3.71
400 433 3.425625 CGACGACAAGAGAGAAAGGAGAG 60.426 52.174 0.00 0.00 0.00 3.20
401 434 3.754323 GACGACAAGAGAGAAAGGAGAGA 59.246 47.826 0.00 0.00 0.00 3.10
402 435 4.145807 ACGACAAGAGAGAAAGGAGAGAA 58.854 43.478 0.00 0.00 0.00 2.87
403 436 4.585162 ACGACAAGAGAGAAAGGAGAGAAA 59.415 41.667 0.00 0.00 0.00 2.52
404 437 5.069251 ACGACAAGAGAGAAAGGAGAGAAAA 59.931 40.000 0.00 0.00 0.00 2.29
405 438 6.162777 CGACAAGAGAGAAAGGAGAGAAAAT 58.837 40.000 0.00 0.00 0.00 1.82
406 439 6.090628 CGACAAGAGAGAAAGGAGAGAAAATG 59.909 42.308 0.00 0.00 0.00 2.32
407 440 7.072263 ACAAGAGAGAAAGGAGAGAAAATGA 57.928 36.000 0.00 0.00 0.00 2.57
408 441 7.160726 ACAAGAGAGAAAGGAGAGAAAATGAG 58.839 38.462 0.00 0.00 0.00 2.90
409 442 7.016072 ACAAGAGAGAAAGGAGAGAAAATGAGA 59.984 37.037 0.00 0.00 0.00 3.27
410 443 7.552050 AGAGAGAAAGGAGAGAAAATGAGAA 57.448 36.000 0.00 0.00 0.00 2.87
411 444 7.614494 AGAGAGAAAGGAGAGAAAATGAGAAG 58.386 38.462 0.00 0.00 0.00 2.85
412 445 6.710278 AGAGAAAGGAGAGAAAATGAGAAGG 58.290 40.000 0.00 0.00 0.00 3.46
413 446 6.500049 AGAGAAAGGAGAGAAAATGAGAAGGA 59.500 38.462 0.00 0.00 0.00 3.36
414 447 7.182568 AGAGAAAGGAGAGAAAATGAGAAGGAT 59.817 37.037 0.00 0.00 0.00 3.24
415 448 7.111466 AGAAAGGAGAGAAAATGAGAAGGATG 58.889 38.462 0.00 0.00 0.00 3.51
416 449 5.370875 AGGAGAGAAAATGAGAAGGATGG 57.629 43.478 0.00 0.00 0.00 3.51
417 450 5.035556 AGGAGAGAAAATGAGAAGGATGGA 58.964 41.667 0.00 0.00 0.00 3.41
418 451 5.130809 AGGAGAGAAAATGAGAAGGATGGAG 59.869 44.000 0.00 0.00 0.00 3.86
419 452 5.104569 GGAGAGAAAATGAGAAGGATGGAGT 60.105 44.000 0.00 0.00 0.00 3.85
420 453 5.988287 AGAGAAAATGAGAAGGATGGAGTC 58.012 41.667 0.00 0.00 0.00 3.36
421 454 4.764172 AGAAAATGAGAAGGATGGAGTCG 58.236 43.478 0.00 0.00 0.00 4.18
422 455 2.611225 AATGAGAAGGATGGAGTCGC 57.389 50.000 0.00 0.00 0.00 5.19
423 456 0.387202 ATGAGAAGGATGGAGTCGCG 59.613 55.000 0.00 0.00 0.00 5.87
424 457 0.965866 TGAGAAGGATGGAGTCGCGT 60.966 55.000 5.77 0.00 0.00 6.01
425 458 0.526524 GAGAAGGATGGAGTCGCGTG 60.527 60.000 5.77 0.00 0.00 5.34
426 459 1.519455 GAAGGATGGAGTCGCGTGG 60.519 63.158 5.77 0.00 0.00 4.94
427 460 2.227089 GAAGGATGGAGTCGCGTGGT 62.227 60.000 5.77 0.00 0.00 4.16
428 461 2.202756 GGATGGAGTCGCGTGGTC 60.203 66.667 5.77 0.85 0.00 4.02
429 462 2.202756 GATGGAGTCGCGTGGTCC 60.203 66.667 5.77 11.48 0.00 4.46
430 463 4.129737 ATGGAGTCGCGTGGTCCG 62.130 66.667 5.77 0.00 40.40 4.79
433 466 4.477975 GAGTCGCGTGGTCCGGAG 62.478 72.222 3.06 0.00 36.94 4.63
446 479 2.282887 CGGAGGGTTTTGGGTGGG 60.283 66.667 0.00 0.00 0.00 4.61
447 480 2.940124 GGAGGGTTTTGGGTGGGT 59.060 61.111 0.00 0.00 0.00 4.51
448 481 1.228769 GGAGGGTTTTGGGTGGGTC 60.229 63.158 0.00 0.00 0.00 4.46
449 482 1.726192 GGAGGGTTTTGGGTGGGTCT 61.726 60.000 0.00 0.00 0.00 3.85
450 483 0.539669 GAGGGTTTTGGGTGGGTCTG 60.540 60.000 0.00 0.00 0.00 3.51
451 484 1.533033 GGGTTTTGGGTGGGTCTGG 60.533 63.158 0.00 0.00 0.00 3.86
452 485 1.533033 GGTTTTGGGTGGGTCTGGG 60.533 63.158 0.00 0.00 0.00 4.45
453 486 1.533033 GTTTTGGGTGGGTCTGGGG 60.533 63.158 0.00 0.00 0.00 4.96
454 487 2.015726 TTTTGGGTGGGTCTGGGGT 61.016 57.895 0.00 0.00 0.00 4.95
455 488 2.305314 TTTTGGGTGGGTCTGGGGTG 62.305 60.000 0.00 0.00 0.00 4.61
456 489 4.525028 TGGGTGGGTCTGGGGTGT 62.525 66.667 0.00 0.00 0.00 4.16
457 490 3.647771 GGGTGGGTCTGGGGTGTC 61.648 72.222 0.00 0.00 0.00 3.67
458 491 4.016706 GGTGGGTCTGGGGTGTCG 62.017 72.222 0.00 0.00 0.00 4.35
459 492 2.920912 GTGGGTCTGGGGTGTCGA 60.921 66.667 0.00 0.00 0.00 4.20
460 493 2.122769 TGGGTCTGGGGTGTCGAA 60.123 61.111 0.00 0.00 0.00 3.71
461 494 1.537889 TGGGTCTGGGGTGTCGAAT 60.538 57.895 0.00 0.00 0.00 3.34
462 495 1.131303 TGGGTCTGGGGTGTCGAATT 61.131 55.000 0.00 0.00 0.00 2.17
463 496 0.392595 GGGTCTGGGGTGTCGAATTC 60.393 60.000 0.00 0.00 0.00 2.17
464 497 0.739813 GGTCTGGGGTGTCGAATTCG 60.740 60.000 21.78 21.78 41.45 3.34
465 498 0.037605 GTCTGGGGTGTCGAATTCGT 60.038 55.000 25.93 0.00 40.80 3.85
466 499 1.203052 GTCTGGGGTGTCGAATTCGTA 59.797 52.381 25.93 14.45 40.80 3.43
467 500 1.203052 TCTGGGGTGTCGAATTCGTAC 59.797 52.381 25.93 23.26 40.80 3.67
468 501 0.967662 TGGGGTGTCGAATTCGTACA 59.032 50.000 25.93 23.22 40.80 2.90
469 502 1.551430 TGGGGTGTCGAATTCGTACAT 59.449 47.619 25.93 0.00 40.80 2.29
470 503 2.027929 TGGGGTGTCGAATTCGTACATT 60.028 45.455 25.93 0.00 40.80 2.71
471 504 3.004862 GGGGTGTCGAATTCGTACATTT 58.995 45.455 25.93 0.00 40.80 2.32
472 505 3.063045 GGGGTGTCGAATTCGTACATTTC 59.937 47.826 25.93 18.63 40.80 2.17
473 506 3.241868 GGGTGTCGAATTCGTACATTTCG 60.242 47.826 25.93 12.91 42.60 3.46
474 507 3.331178 GTGTCGAATTCGTACATTTCGC 58.669 45.455 25.93 12.77 41.38 4.70
475 508 2.346244 TGTCGAATTCGTACATTTCGCC 59.654 45.455 25.93 6.48 41.38 5.54
476 509 2.601763 GTCGAATTCGTACATTTCGCCT 59.398 45.455 25.93 0.00 41.38 5.52
477 510 3.792956 GTCGAATTCGTACATTTCGCCTA 59.207 43.478 25.93 0.33 41.38 3.93
478 511 4.443394 GTCGAATTCGTACATTTCGCCTAT 59.557 41.667 25.93 0.00 41.38 2.57
479 512 4.678287 TCGAATTCGTACATTTCGCCTATC 59.322 41.667 25.93 0.00 41.38 2.08
480 513 4.680110 CGAATTCGTACATTTCGCCTATCT 59.320 41.667 19.67 0.00 36.26 1.98
481 514 5.387444 CGAATTCGTACATTTCGCCTATCTG 60.387 44.000 19.67 0.00 36.26 2.90
482 515 3.364889 TCGTACATTTCGCCTATCTGG 57.635 47.619 0.00 0.00 39.35 3.86
483 516 2.953648 TCGTACATTTCGCCTATCTGGA 59.046 45.455 0.00 0.00 38.35 3.86
484 517 3.050619 CGTACATTTCGCCTATCTGGAC 58.949 50.000 0.00 0.00 38.35 4.02
485 518 3.243434 CGTACATTTCGCCTATCTGGACT 60.243 47.826 0.00 0.00 38.35 3.85
486 519 3.460857 ACATTTCGCCTATCTGGACTC 57.539 47.619 0.00 0.00 38.35 3.36
487 520 2.103263 ACATTTCGCCTATCTGGACTCC 59.897 50.000 0.00 0.00 38.35 3.85
488 521 2.160721 TTTCGCCTATCTGGACTCCT 57.839 50.000 0.00 0.00 38.35 3.69
489 522 1.403814 TTCGCCTATCTGGACTCCTG 58.596 55.000 0.00 0.00 38.35 3.86
490 523 1.109920 TCGCCTATCTGGACTCCTGC 61.110 60.000 0.00 0.00 38.35 4.85
491 524 1.395045 CGCCTATCTGGACTCCTGCA 61.395 60.000 0.00 0.00 38.35 4.41
492 525 0.833287 GCCTATCTGGACTCCTGCAA 59.167 55.000 0.00 0.00 38.35 4.08
493 526 1.210478 GCCTATCTGGACTCCTGCAAA 59.790 52.381 0.00 0.00 38.35 3.68
494 527 2.911484 CCTATCTGGACTCCTGCAAAC 58.089 52.381 0.00 0.00 38.35 2.93
495 528 2.237143 CCTATCTGGACTCCTGCAAACA 59.763 50.000 0.00 0.00 38.35 2.83
496 529 3.118112 CCTATCTGGACTCCTGCAAACAT 60.118 47.826 0.00 0.00 38.35 2.71
497 530 2.957402 TCTGGACTCCTGCAAACATT 57.043 45.000 0.00 0.00 0.00 2.71
498 531 2.783135 TCTGGACTCCTGCAAACATTC 58.217 47.619 0.00 0.00 0.00 2.67
499 532 1.815003 CTGGACTCCTGCAAACATTCC 59.185 52.381 0.00 0.00 0.00 3.01
500 533 1.425066 TGGACTCCTGCAAACATTCCT 59.575 47.619 0.00 0.00 0.00 3.36
501 534 2.158475 TGGACTCCTGCAAACATTCCTT 60.158 45.455 0.00 0.00 0.00 3.36
502 535 3.073798 TGGACTCCTGCAAACATTCCTTA 59.926 43.478 0.00 0.00 0.00 2.69
503 536 4.263905 TGGACTCCTGCAAACATTCCTTAT 60.264 41.667 0.00 0.00 0.00 1.73
504 537 4.706962 GGACTCCTGCAAACATTCCTTATT 59.293 41.667 0.00 0.00 0.00 1.40
505 538 5.185828 GGACTCCTGCAAACATTCCTTATTT 59.814 40.000 0.00 0.00 0.00 1.40
506 539 6.295292 GGACTCCTGCAAACATTCCTTATTTT 60.295 38.462 0.00 0.00 0.00 1.82
507 540 7.066307 ACTCCTGCAAACATTCCTTATTTTT 57.934 32.000 0.00 0.00 0.00 1.94
508 541 6.930722 ACTCCTGCAAACATTCCTTATTTTTG 59.069 34.615 0.00 0.00 37.10 2.44
509 542 6.825610 TCCTGCAAACATTCCTTATTTTTGT 58.174 32.000 0.00 0.00 36.64 2.83
510 543 6.928492 TCCTGCAAACATTCCTTATTTTTGTC 59.072 34.615 0.00 0.00 36.64 3.18
511 544 6.930722 CCTGCAAACATTCCTTATTTTTGTCT 59.069 34.615 0.00 0.00 36.64 3.41
512 545 7.442062 CCTGCAAACATTCCTTATTTTTGTCTT 59.558 33.333 0.00 0.00 36.64 3.01
513 546 8.729805 TGCAAACATTCCTTATTTTTGTCTTT 57.270 26.923 0.00 0.00 36.64 2.52
514 547 8.610896 TGCAAACATTCCTTATTTTTGTCTTTG 58.389 29.630 0.00 0.00 36.64 2.77
515 548 8.611757 GCAAACATTCCTTATTTTTGTCTTTGT 58.388 29.630 0.00 0.00 36.64 2.83
520 553 9.437045 CATTCCTTATTTTTGTCTTTGTTTTGC 57.563 29.630 0.00 0.00 0.00 3.68
521 554 8.553459 TTCCTTATTTTTGTCTTTGTTTTGCA 57.447 26.923 0.00 0.00 0.00 4.08
522 555 8.195617 TCCTTATTTTTGTCTTTGTTTTGCAG 57.804 30.769 0.00 0.00 0.00 4.41
523 556 7.279758 TCCTTATTTTTGTCTTTGTTTTGCAGG 59.720 33.333 0.00 0.00 0.00 4.85
524 557 7.279758 CCTTATTTTTGTCTTTGTTTTGCAGGA 59.720 33.333 0.00 0.00 0.00 3.86
525 558 6.667007 ATTTTTGTCTTTGTTTTGCAGGAG 57.333 33.333 0.00 0.00 0.00 3.69
526 559 5.398603 TTTTGTCTTTGTTTTGCAGGAGA 57.601 34.783 0.00 0.00 0.00 3.71
527 560 5.398603 TTTGTCTTTGTTTTGCAGGAGAA 57.601 34.783 0.00 0.00 0.00 2.87
528 561 5.398603 TTGTCTTTGTTTTGCAGGAGAAA 57.601 34.783 0.00 0.00 0.00 2.52
529 562 5.596836 TGTCTTTGTTTTGCAGGAGAAAT 57.403 34.783 0.00 0.00 0.00 2.17
530 563 5.976458 TGTCTTTGTTTTGCAGGAGAAATT 58.024 33.333 0.00 0.00 0.00 1.82
531 564 7.106439 TGTCTTTGTTTTGCAGGAGAAATTA 57.894 32.000 0.00 0.00 0.00 1.40
532 565 7.725251 TGTCTTTGTTTTGCAGGAGAAATTAT 58.275 30.769 0.00 0.00 0.00 1.28
533 566 7.652909 TGTCTTTGTTTTGCAGGAGAAATTATG 59.347 33.333 0.00 0.00 0.00 1.90
534 567 7.653311 GTCTTTGTTTTGCAGGAGAAATTATGT 59.347 33.333 0.00 0.00 0.00 2.29
535 568 8.203485 TCTTTGTTTTGCAGGAGAAATTATGTT 58.797 29.630 0.00 0.00 0.00 2.71
536 569 8.729805 TTTGTTTTGCAGGAGAAATTATGTTT 57.270 26.923 0.00 0.00 0.00 2.83
537 570 8.729805 TTGTTTTGCAGGAGAAATTATGTTTT 57.270 26.923 0.00 0.00 0.00 2.43
538 571 8.140677 TGTTTTGCAGGAGAAATTATGTTTTG 57.859 30.769 0.00 0.00 0.00 2.44
539 572 7.984050 TGTTTTGCAGGAGAAATTATGTTTTGA 59.016 29.630 0.00 0.00 0.00 2.69
540 573 7.945033 TTTGCAGGAGAAATTATGTTTTGAC 57.055 32.000 0.00 0.00 0.00 3.18
541 574 6.024552 TGCAGGAGAAATTATGTTTTGACC 57.975 37.500 0.00 0.00 0.00 4.02
542 575 5.538053 TGCAGGAGAAATTATGTTTTGACCA 59.462 36.000 0.00 0.00 0.00 4.02
543 576 6.211184 TGCAGGAGAAATTATGTTTTGACCAT 59.789 34.615 0.00 0.00 0.00 3.55
544 577 6.753744 GCAGGAGAAATTATGTTTTGACCATC 59.246 38.462 0.00 0.00 0.00 3.51
545 578 7.260603 CAGGAGAAATTATGTTTTGACCATCC 58.739 38.462 0.00 0.00 0.00 3.51
546 579 6.381133 AGGAGAAATTATGTTTTGACCATCCC 59.619 38.462 0.00 0.00 0.00 3.85
547 580 6.154363 GGAGAAATTATGTTTTGACCATCCCA 59.846 38.462 0.00 0.00 0.00 4.37
548 581 6.935167 AGAAATTATGTTTTGACCATCCCAC 58.065 36.000 0.00 0.00 0.00 4.61
549 582 6.496565 AGAAATTATGTTTTGACCATCCCACA 59.503 34.615 0.00 0.00 0.00 4.17
550 583 6.872585 AATTATGTTTTGACCATCCCACAT 57.127 33.333 0.00 0.00 0.00 3.21
551 584 7.969690 AATTATGTTTTGACCATCCCACATA 57.030 32.000 0.00 0.00 0.00 2.29
552 585 6.767524 TTATGTTTTGACCATCCCACATAC 57.232 37.500 0.00 0.00 29.07 2.39
553 586 3.426615 TGTTTTGACCATCCCACATACC 58.573 45.455 0.00 0.00 0.00 2.73
554 587 2.411628 TTTGACCATCCCACATACCG 57.588 50.000 0.00 0.00 0.00 4.02
555 588 1.574263 TTGACCATCCCACATACCGA 58.426 50.000 0.00 0.00 0.00 4.69
556 589 1.801242 TGACCATCCCACATACCGAT 58.199 50.000 0.00 0.00 0.00 4.18
557 590 2.965562 TGACCATCCCACATACCGATA 58.034 47.619 0.00 0.00 0.00 2.92
558 591 3.516586 TGACCATCCCACATACCGATAT 58.483 45.455 0.00 0.00 0.00 1.63
559 592 4.679331 TGACCATCCCACATACCGATATA 58.321 43.478 0.00 0.00 0.00 0.86
560 593 5.088026 TGACCATCCCACATACCGATATAA 58.912 41.667 0.00 0.00 0.00 0.98
561 594 5.186992 TGACCATCCCACATACCGATATAAG 59.813 44.000 0.00 0.00 0.00 1.73
562 595 5.091552 ACCATCCCACATACCGATATAAGT 58.908 41.667 0.00 0.00 0.00 2.24
563 596 5.546499 ACCATCCCACATACCGATATAAGTT 59.454 40.000 0.00 0.00 0.00 2.66
564 597 5.874810 CCATCCCACATACCGATATAAGTTG 59.125 44.000 0.00 0.00 0.00 3.16
565 598 6.295632 CCATCCCACATACCGATATAAGTTGA 60.296 42.308 0.00 0.00 0.00 3.18
566 599 6.092955 TCCCACATACCGATATAAGTTGAC 57.907 41.667 0.00 0.00 0.00 3.18
567 600 5.599242 TCCCACATACCGATATAAGTTGACA 59.401 40.000 0.00 0.00 0.00 3.58
568 601 6.269077 TCCCACATACCGATATAAGTTGACAT 59.731 38.462 0.00 0.00 0.00 3.06
569 602 6.934645 CCCACATACCGATATAAGTTGACATT 59.065 38.462 0.00 0.00 0.00 2.71
570 603 7.095229 CCCACATACCGATATAAGTTGACATTG 60.095 40.741 0.00 0.00 0.00 2.82
571 604 7.095229 CCACATACCGATATAAGTTGACATTGG 60.095 40.741 0.00 0.00 0.00 3.16
572 605 7.655732 CACATACCGATATAAGTTGACATTGGA 59.344 37.037 6.50 0.00 0.00 3.53
573 606 8.375506 ACATACCGATATAAGTTGACATTGGAT 58.624 33.333 6.50 0.00 0.00 3.41
574 607 8.659491 CATACCGATATAAGTTGACATTGGATG 58.341 37.037 6.50 0.00 0.00 3.51
575 608 5.997746 ACCGATATAAGTTGACATTGGATGG 59.002 40.000 6.50 0.00 33.60 3.51
576 609 5.106555 CCGATATAAGTTGACATTGGATGGC 60.107 44.000 0.00 0.00 39.32 4.40
577 610 5.702670 CGATATAAGTTGACATTGGATGGCT 59.297 40.000 0.00 0.00 39.69 4.75
578 611 6.205464 CGATATAAGTTGACATTGGATGGCTT 59.795 38.462 0.00 0.00 39.69 4.35
579 612 5.841957 ATAAGTTGACATTGGATGGCTTC 57.158 39.130 0.00 0.00 39.69 3.86
580 613 2.450476 AGTTGACATTGGATGGCTTCC 58.550 47.619 12.30 12.30 45.69 3.46
591 624 4.861102 GGATGGCTTCCATAATCCAAAG 57.139 45.455 14.15 0.00 45.26 2.77
592 625 3.575687 GGATGGCTTCCATAATCCAAAGG 59.424 47.826 14.15 0.00 45.26 3.11
593 626 3.030873 TGGCTTCCATAATCCAAAGGG 57.969 47.619 0.00 0.00 27.94 3.95
594 627 3.207321 ATGGCTTCCATAATCCAAAGGGA 59.793 43.478 0.00 0.00 44.92 4.20
595 628 4.693621 ATGGCTTCCATAATCCAAAGGGAG 60.694 45.833 0.00 0.00 44.40 4.30
596 629 7.706072 ATGGCTTCCATAATCCAAAGGGAGG 62.706 48.000 0.00 0.00 44.40 4.30
605 638 2.424793 TCCAAAGGGAGGTTTACAGGT 58.575 47.619 0.00 0.00 38.64 4.00
606 639 3.600433 TCCAAAGGGAGGTTTACAGGTA 58.400 45.455 0.00 0.00 38.64 3.08
607 640 3.585732 TCCAAAGGGAGGTTTACAGGTAG 59.414 47.826 0.00 0.00 38.64 3.18
608 641 3.585732 CCAAAGGGAGGTTTACAGGTAGA 59.414 47.826 0.00 0.00 35.59 2.59
609 642 4.323562 CCAAAGGGAGGTTTACAGGTAGAG 60.324 50.000 0.00 0.00 35.59 2.43
610 643 4.415224 AAGGGAGGTTTACAGGTAGAGA 57.585 45.455 0.00 0.00 0.00 3.10
611 644 3.710724 AGGGAGGTTTACAGGTAGAGAC 58.289 50.000 0.00 0.00 0.00 3.36
612 645 2.426381 GGGAGGTTTACAGGTAGAGACG 59.574 54.545 0.00 0.00 0.00 4.18
613 646 2.159268 GGAGGTTTACAGGTAGAGACGC 60.159 54.545 0.00 0.00 0.00 5.19
614 647 1.823610 AGGTTTACAGGTAGAGACGCC 59.176 52.381 0.00 0.00 0.00 5.68
676 711 2.032681 GGAGTCACAGGCCCACAC 59.967 66.667 0.00 0.00 0.00 3.82
677 712 2.357517 GAGTCACAGGCCCACACG 60.358 66.667 0.00 0.00 0.00 4.49
702 741 2.129607 GTCAAAGCAAAGACCGTCGTA 58.870 47.619 0.00 0.00 0.00 3.43
763 826 2.639286 CAGCCACCACGCTTGTTC 59.361 61.111 0.00 0.00 36.82 3.18
875 964 1.267806 GAGGAACACACAAGCACATGG 59.732 52.381 0.00 0.00 0.00 3.66
931 1045 1.063806 CAACTCGGCGTCTCTTCTTG 58.936 55.000 6.85 0.00 0.00 3.02
1023 1188 1.062581 CCTCTCCCTCCATTCCTCTCA 60.063 57.143 0.00 0.00 0.00 3.27
1074 1255 2.202730 GAGCTCTCTCCAGCGCAC 60.203 66.667 11.47 0.00 44.82 5.34
1100 1308 2.421952 GCCTACCAGAATTCATCCAGCA 60.422 50.000 8.44 0.00 0.00 4.41
1592 1833 8.514330 AACTGAACCAACAACAAATTAGTCTA 57.486 30.769 0.00 0.00 0.00 2.59
1593 1834 8.691661 ACTGAACCAACAACAAATTAGTCTAT 57.308 30.769 0.00 0.00 0.00 1.98
1594 1835 8.784043 ACTGAACCAACAACAAATTAGTCTATC 58.216 33.333 0.00 0.00 0.00 2.08
1822 2122 0.512952 CTCCAAACTTCTCAACGCCG 59.487 55.000 0.00 0.00 0.00 6.46
2091 2397 4.312443 TCGTTCTTTTCGAGGCTAACATT 58.688 39.130 0.00 0.00 33.38 2.71
2190 2496 1.331214 CCCACAAGTTGAAGCACCAT 58.669 50.000 10.54 0.00 0.00 3.55
2565 2871 3.006967 AGCTGGTGAACGACTTCTACAAT 59.993 43.478 0.00 0.00 0.00 2.71
2667 2973 0.528017 CGTACTGCTCTGAGCTCCAA 59.472 55.000 28.04 9.06 42.97 3.53
2891 3197 1.525077 GTGTGAAGACGGTGGCCAA 60.525 57.895 7.24 0.00 0.00 4.52
2958 3264 0.323451 TCTGCGAGAAGGACCTGCTA 60.323 55.000 0.33 0.00 0.00 3.49
3022 3328 2.438434 GCAGCGCCAACTACCCAT 60.438 61.111 2.29 0.00 0.00 4.00
3197 3503 2.268920 GGAGAATGGCACCGCTGA 59.731 61.111 0.00 0.00 0.00 4.26
3276 3582 3.097614 GGAGCTTGGGACTGAGTACTTA 58.902 50.000 0.00 0.00 0.00 2.24
3303 3609 2.370349 GAGAAGACACGATCTCCTGGA 58.630 52.381 0.00 0.00 36.27 3.86
3418 3725 5.086104 ACCTATCTGCTGAACAACGTATT 57.914 39.130 0.00 0.00 0.00 1.89
3477 3785 5.485209 AAGACTCCGGATGTTCTTAGTTT 57.515 39.130 17.35 0.00 0.00 2.66
3541 3855 8.807667 AGATTATGTTTTGAAACTTGCTCTTG 57.192 30.769 7.97 0.00 39.59 3.02
3701 4051 1.073923 GTCAAATGGTCTGGTGGAGGT 59.926 52.381 0.00 0.00 0.00 3.85
3735 4093 4.330074 AGTCCAAAGAATCTATTGTTCGCG 59.670 41.667 0.00 0.00 0.00 5.87
3752 4118 1.987704 GCGTGCCATTGCCATTACGA 61.988 55.000 3.92 0.00 35.80 3.43
3757 4123 1.865248 GCCATTGCCATTACGATGTGC 60.865 52.381 0.00 0.00 33.05 4.57
3829 4341 0.387929 TGGACTGTGGTGTCTTCGTC 59.612 55.000 0.00 0.00 37.16 4.20
3831 4343 1.276145 GACTGTGGTGTCTTCGTCGC 61.276 60.000 0.00 0.00 34.39 5.19
3832 4344 1.007271 CTGTGGTGTCTTCGTCGCT 60.007 57.895 0.00 0.00 0.00 4.93
3833 4345 1.278172 CTGTGGTGTCTTCGTCGCTG 61.278 60.000 0.00 0.00 0.00 5.18
3834 4346 2.355837 TGGTGTCTTCGTCGCTGC 60.356 61.111 0.00 0.00 0.00 5.25
3835 4347 2.049063 GGTGTCTTCGTCGCTGCT 60.049 61.111 0.00 0.00 0.00 4.24
3836 4348 1.211969 GGTGTCTTCGTCGCTGCTA 59.788 57.895 0.00 0.00 0.00 3.49
3837 4349 0.798771 GGTGTCTTCGTCGCTGCTAG 60.799 60.000 0.00 0.00 0.00 3.42
3838 4350 0.168348 GTGTCTTCGTCGCTGCTAGA 59.832 55.000 0.00 0.00 0.00 2.43
3839 4351 0.168348 TGTCTTCGTCGCTGCTAGAC 59.832 55.000 0.00 0.00 36.61 2.59
3840 4352 0.168348 GTCTTCGTCGCTGCTAGACA 59.832 55.000 8.12 0.00 38.46 3.41
3841 4353 1.095600 TCTTCGTCGCTGCTAGACAT 58.904 50.000 8.12 0.00 38.46 3.06
3842 4354 1.064208 TCTTCGTCGCTGCTAGACATC 59.936 52.381 8.12 0.00 38.46 3.06
3843 4355 0.808755 TTCGTCGCTGCTAGACATCA 59.191 50.000 8.12 0.00 38.46 3.07
3845 4357 0.917259 CGTCGCTGCTAGACATCAAC 59.083 55.000 8.12 0.00 38.46 3.18
3846 4358 1.732405 CGTCGCTGCTAGACATCAACA 60.732 52.381 8.12 0.00 38.46 3.33
3847 4359 1.656095 GTCGCTGCTAGACATCAACAC 59.344 52.381 0.00 0.00 38.42 3.32
3848 4360 0.642291 CGCTGCTAGACATCAACACG 59.358 55.000 0.00 0.00 0.00 4.49
3851 4363 2.854777 GCTGCTAGACATCAACACGTAG 59.145 50.000 0.00 0.00 0.00 3.51
3881 4414 8.173130 GCAATGCCTTCTCTGAATTTTTATTTG 58.827 33.333 0.00 0.00 0.00 2.32
3921 4484 9.382244 GTTTACAAATTTCAGTCTGACATGTAC 57.618 33.333 10.88 0.00 0.00 2.90
3951 4514 4.985538 AGGATTGCAGAGTCTTTTGGTTA 58.014 39.130 0.00 0.00 0.00 2.85
3976 4544 1.874231 GCTCTGATGCAGATGACATGG 59.126 52.381 0.00 0.00 39.92 3.66
4067 4636 7.999679 TGAAAGAGAGTTCAAAATCAACATGT 58.000 30.769 0.00 0.00 34.59 3.21
4082 4651 7.572523 ATCAACATGTGGGTAAACATATGAG 57.427 36.000 10.38 3.07 40.95 2.90
4156 4726 5.910637 TGATTTTGCAATCTTGTTCTTGC 57.089 34.783 0.00 0.51 46.19 4.01
4160 4730 7.329962 TGATTTTGCAATCTTGTTCTTGCTATG 59.670 33.333 0.00 0.00 46.16 2.23
4173 4743 4.253685 TCTTGCTATGGTGCTTACAACTC 58.746 43.478 0.00 0.00 33.30 3.01
4221 4791 8.571336 AGATAACTGAATGAAACCACAAGAAAG 58.429 33.333 0.00 0.00 0.00 2.62
4222 4792 6.773976 AACTGAATGAAACCACAAGAAAGA 57.226 33.333 0.00 0.00 0.00 2.52
4223 4793 6.773976 ACTGAATGAAACCACAAGAAAGAA 57.226 33.333 0.00 0.00 0.00 2.52
4224 4794 7.169158 ACTGAATGAAACCACAAGAAAGAAA 57.831 32.000 0.00 0.00 0.00 2.52
4225 4795 7.260603 ACTGAATGAAACCACAAGAAAGAAAG 58.739 34.615 0.00 0.00 0.00 2.62
4252 4827 5.665916 AATCTTCCTGGTATTTGCTTTGG 57.334 39.130 0.00 0.00 0.00 3.28
4259 4834 6.489603 TCCTGGTATTTGCTTTGGATAGAAA 58.510 36.000 0.00 0.00 0.00 2.52
4262 4837 7.093771 CCTGGTATTTGCTTTGGATAGAAAACT 60.094 37.037 0.00 0.00 0.00 2.66
4274 4849 4.166144 GGATAGAAAACTGGGATCTTGGGA 59.834 45.833 0.00 0.00 0.00 4.37
4278 4853 5.406163 AGAAAACTGGGATCTTGGGATTTT 58.594 37.500 0.00 0.00 31.46 1.82
4334 7650 5.748670 TTACTGGGCTTACTTATGACACA 57.251 39.130 0.00 0.00 0.00 3.72
4474 7821 7.715249 GCCTTATATGTTCATAGGAAAGACACA 59.285 37.037 0.00 0.00 34.13 3.72
4482 7829 6.358974 TCATAGGAAAGACACAACTGATGA 57.641 37.500 0.00 0.00 0.00 2.92
4483 7830 6.950842 TCATAGGAAAGACACAACTGATGAT 58.049 36.000 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.891919 TGCTCAACCGCAACAGGTC 60.892 57.895 0.00 0.00 45.21 3.85
20 21 0.108804 GCTCGGTCAAAGGTCATCGA 60.109 55.000 0.00 0.00 0.00 3.59
29 30 2.286365 ATTTCAAGGGCTCGGTCAAA 57.714 45.000 0.00 0.00 0.00 2.69
34 35 2.113860 TCTCAATTTCAAGGGCTCGG 57.886 50.000 0.00 0.00 0.00 4.63
49 50 1.219124 GCGGAGGAGCATGTTCTCA 59.781 57.895 9.57 0.00 37.05 3.27
77 78 2.035442 GCAGGCGGTCCTTGAAGAC 61.035 63.158 0.00 0.00 41.93 3.01
82 83 1.442526 GATGATGCAGGCGGTCCTTG 61.443 60.000 0.00 0.00 41.93 3.61
110 111 2.164017 GGACGAGGAGGAGTACTTTGAC 59.836 54.545 0.00 0.00 0.00 3.18
113 114 1.004044 TCGGACGAGGAGGAGTACTTT 59.996 52.381 0.00 0.00 0.00 2.66
114 115 0.617413 TCGGACGAGGAGGAGTACTT 59.383 55.000 0.00 0.00 0.00 2.24
168 169 6.428159 GCAATGGATTCCGATTTAGAGTACAT 59.572 38.462 0.00 0.00 0.00 2.29
176 177 7.831753 TGTTTTTAGCAATGGATTCCGATTTA 58.168 30.769 0.00 0.00 0.00 1.40
196 197 9.981114 CTGAAAATAGTTGTCCCTTATTGTTTT 57.019 29.630 0.00 0.00 0.00 2.43
198 199 7.451566 AGCTGAAAATAGTTGTCCCTTATTGTT 59.548 33.333 0.00 0.00 0.00 2.83
199 200 6.948309 AGCTGAAAATAGTTGTCCCTTATTGT 59.052 34.615 0.00 0.00 0.00 2.71
200 201 7.396540 AGCTGAAAATAGTTGTCCCTTATTG 57.603 36.000 0.00 0.00 0.00 1.90
203 204 5.497474 GGAGCTGAAAATAGTTGTCCCTTA 58.503 41.667 0.00 0.00 0.00 2.69
215 216 3.071874 TGAATCACCGGAGCTGAAAAT 57.928 42.857 9.46 0.00 0.00 1.82
216 217 2.559698 TGAATCACCGGAGCTGAAAA 57.440 45.000 9.46 0.00 0.00 2.29
229 230 1.737838 GGCAACTGGTCGATGAATCA 58.262 50.000 0.00 0.00 0.00 2.57
240 241 3.636929 TACCATGCCCGGCAACTGG 62.637 63.158 24.83 24.83 43.62 4.00
247 248 1.372683 CATCCTCTACCATGCCCGG 59.627 63.158 0.00 0.00 0.00 5.73
255 256 2.473576 ACCAGGTACCATCCTCTACC 57.526 55.000 15.94 0.00 35.37 3.18
274 275 1.379977 CTGTCCTCTGACCGCCCTA 60.380 63.158 0.00 0.00 41.01 3.53
275 276 2.681778 CTGTCCTCTGACCGCCCT 60.682 66.667 0.00 0.00 41.01 5.19
284 285 1.481056 CGTTCAACCCCCTGTCCTCT 61.481 60.000 0.00 0.00 0.00 3.69
302 303 2.419297 CCCCACATCTTCTCTTTCTCCG 60.419 54.545 0.00 0.00 0.00 4.63
303 304 2.092699 CCCCCACATCTTCTCTTTCTCC 60.093 54.545 0.00 0.00 0.00 3.71
333 334 1.153745 CTCCACGCTCCACTACAGC 60.154 63.158 0.00 0.00 0.00 4.40
337 338 1.228769 ACCACTCCACGCTCCACTA 60.229 57.895 0.00 0.00 0.00 2.74
339 340 2.357517 CACCACTCCACGCTCCAC 60.358 66.667 0.00 0.00 0.00 4.02
340 341 3.625897 CCACCACTCCACGCTCCA 61.626 66.667 0.00 0.00 0.00 3.86
345 346 4.704833 CCTGGCCACCACTCCACG 62.705 72.222 0.00 0.00 0.00 4.94
346 347 4.351054 CCCTGGCCACCACTCCAC 62.351 72.222 0.00 0.00 0.00 4.02
347 348 4.918360 ACCCTGGCCACCACTCCA 62.918 66.667 0.00 0.00 0.00 3.86
349 350 4.351054 CCACCCTGGCCACCACTC 62.351 72.222 0.00 0.00 0.00 3.51
377 410 1.068472 TCCTTTCTCTCTTGTCGTCGC 60.068 52.381 0.00 0.00 0.00 5.19
395 428 5.104569 ACTCCATCCTTCTCATTTTCTCTCC 60.105 44.000 0.00 0.00 0.00 3.71
396 429 5.988287 ACTCCATCCTTCTCATTTTCTCTC 58.012 41.667 0.00 0.00 0.00 3.20
397 430 5.395103 CGACTCCATCCTTCTCATTTTCTCT 60.395 44.000 0.00 0.00 0.00 3.10
398 431 4.808364 CGACTCCATCCTTCTCATTTTCTC 59.192 45.833 0.00 0.00 0.00 2.87
399 432 4.764172 CGACTCCATCCTTCTCATTTTCT 58.236 43.478 0.00 0.00 0.00 2.52
400 433 3.311048 GCGACTCCATCCTTCTCATTTTC 59.689 47.826 0.00 0.00 0.00 2.29
401 434 3.274288 GCGACTCCATCCTTCTCATTTT 58.726 45.455 0.00 0.00 0.00 1.82
402 435 2.739932 CGCGACTCCATCCTTCTCATTT 60.740 50.000 0.00 0.00 0.00 2.32
403 436 1.202463 CGCGACTCCATCCTTCTCATT 60.202 52.381 0.00 0.00 0.00 2.57
404 437 0.387202 CGCGACTCCATCCTTCTCAT 59.613 55.000 0.00 0.00 0.00 2.90
405 438 0.965866 ACGCGACTCCATCCTTCTCA 60.966 55.000 15.93 0.00 0.00 3.27
406 439 0.526524 CACGCGACTCCATCCTTCTC 60.527 60.000 15.93 0.00 0.00 2.87
407 440 1.513158 CACGCGACTCCATCCTTCT 59.487 57.895 15.93 0.00 0.00 2.85
408 441 1.519455 CCACGCGACTCCATCCTTC 60.519 63.158 15.93 0.00 0.00 3.46
409 442 2.227089 GACCACGCGACTCCATCCTT 62.227 60.000 15.93 0.00 0.00 3.36
410 443 2.680352 ACCACGCGACTCCATCCT 60.680 61.111 15.93 0.00 0.00 3.24
411 444 2.202756 GACCACGCGACTCCATCC 60.203 66.667 15.93 0.00 0.00 3.51
412 445 2.202756 GGACCACGCGACTCCATC 60.203 66.667 15.93 0.74 0.00 3.51
413 446 4.129737 CGGACCACGCGACTCCAT 62.130 66.667 15.93 0.00 34.82 3.41
416 449 4.477975 CTCCGGACCACGCGACTC 62.478 72.222 15.93 3.20 42.52 3.36
421 454 3.837570 AAAACCCTCCGGACCACGC 62.838 63.158 0.00 0.00 42.52 5.34
422 455 1.964373 CAAAACCCTCCGGACCACG 60.964 63.158 0.00 0.00 43.80 4.94
423 456 1.602605 CCAAAACCCTCCGGACCAC 60.603 63.158 0.00 0.00 0.00 4.16
424 457 2.836187 CCCAAAACCCTCCGGACCA 61.836 63.158 0.00 0.00 0.00 4.02
425 458 2.035155 CCCAAAACCCTCCGGACC 59.965 66.667 0.00 0.00 0.00 4.46
426 459 1.602605 CACCCAAAACCCTCCGGAC 60.603 63.158 0.00 0.00 0.00 4.79
427 460 2.836187 CCACCCAAAACCCTCCGGA 61.836 63.158 2.93 2.93 0.00 5.14
428 461 2.282887 CCACCCAAAACCCTCCGG 60.283 66.667 0.00 0.00 0.00 5.14
429 462 2.282887 CCCACCCAAAACCCTCCG 60.283 66.667 0.00 0.00 0.00 4.63
430 463 1.228769 GACCCACCCAAAACCCTCC 60.229 63.158 0.00 0.00 0.00 4.30
431 464 0.539669 CAGACCCACCCAAAACCCTC 60.540 60.000 0.00 0.00 0.00 4.30
432 465 1.541672 CAGACCCACCCAAAACCCT 59.458 57.895 0.00 0.00 0.00 4.34
433 466 1.533033 CCAGACCCACCCAAAACCC 60.533 63.158 0.00 0.00 0.00 4.11
434 467 1.533033 CCCAGACCCACCCAAAACC 60.533 63.158 0.00 0.00 0.00 3.27
435 468 1.533033 CCCCAGACCCACCCAAAAC 60.533 63.158 0.00 0.00 0.00 2.43
436 469 2.015726 ACCCCAGACCCACCCAAAA 61.016 57.895 0.00 0.00 0.00 2.44
437 470 2.370403 ACCCCAGACCCACCCAAA 60.370 61.111 0.00 0.00 0.00 3.28
438 471 3.182263 CACCCCAGACCCACCCAA 61.182 66.667 0.00 0.00 0.00 4.12
439 472 4.525028 ACACCCCAGACCCACCCA 62.525 66.667 0.00 0.00 0.00 4.51
440 473 3.647771 GACACCCCAGACCCACCC 61.648 72.222 0.00 0.00 0.00 4.61
441 474 4.016706 CGACACCCCAGACCCACC 62.017 72.222 0.00 0.00 0.00 4.61
442 475 1.838073 ATTCGACACCCCAGACCCAC 61.838 60.000 0.00 0.00 0.00 4.61
443 476 1.131303 AATTCGACACCCCAGACCCA 61.131 55.000 0.00 0.00 0.00 4.51
444 477 0.392595 GAATTCGACACCCCAGACCC 60.393 60.000 0.00 0.00 0.00 4.46
445 478 0.739813 CGAATTCGACACCCCAGACC 60.740 60.000 23.29 0.00 43.02 3.85
446 479 0.037605 ACGAATTCGACACCCCAGAC 60.038 55.000 33.05 0.00 43.02 3.51
447 480 1.203052 GTACGAATTCGACACCCCAGA 59.797 52.381 33.05 4.77 43.02 3.86
448 481 1.067425 TGTACGAATTCGACACCCCAG 60.067 52.381 33.05 2.22 43.02 4.45
449 482 0.967662 TGTACGAATTCGACACCCCA 59.032 50.000 33.05 15.88 43.02 4.96
450 483 2.304751 ATGTACGAATTCGACACCCC 57.695 50.000 33.05 13.75 43.02 4.95
451 484 3.241868 CGAAATGTACGAATTCGACACCC 60.242 47.826 33.05 19.86 46.50 4.61
452 485 3.779992 GCGAAATGTACGAATTCGACACC 60.780 47.826 33.05 20.12 46.50 4.16
453 486 3.331178 GCGAAATGTACGAATTCGACAC 58.669 45.455 33.05 26.53 46.50 3.67
454 487 3.628053 GCGAAATGTACGAATTCGACA 57.372 42.857 33.05 28.12 46.50 4.35
455 488 2.952614 GGCGAAATGTACGAATTCGAC 58.047 47.619 33.05 24.14 46.50 4.20
456 489 2.883574 AGGCGAAATGTACGAATTCGA 58.116 42.857 33.05 12.53 46.50 3.71
457 490 4.680110 AGATAGGCGAAATGTACGAATTCG 59.320 41.667 25.64 25.64 46.36 3.34
458 491 5.107453 CCAGATAGGCGAAATGTACGAATTC 60.107 44.000 0.00 0.00 0.00 2.17
459 492 4.750098 CCAGATAGGCGAAATGTACGAATT 59.250 41.667 0.00 0.00 0.00 2.17
460 493 4.038763 TCCAGATAGGCGAAATGTACGAAT 59.961 41.667 0.00 0.00 37.29 3.34
461 494 3.382227 TCCAGATAGGCGAAATGTACGAA 59.618 43.478 0.00 0.00 37.29 3.85
462 495 2.953648 TCCAGATAGGCGAAATGTACGA 59.046 45.455 0.00 0.00 37.29 3.43
463 496 3.050619 GTCCAGATAGGCGAAATGTACG 58.949 50.000 0.00 0.00 37.29 3.67
464 497 4.299978 GAGTCCAGATAGGCGAAATGTAC 58.700 47.826 0.00 0.00 37.29 2.90
465 498 3.321111 GGAGTCCAGATAGGCGAAATGTA 59.679 47.826 3.60 0.00 37.29 2.29
466 499 2.103263 GGAGTCCAGATAGGCGAAATGT 59.897 50.000 3.60 0.00 37.29 2.71
467 500 2.366916 AGGAGTCCAGATAGGCGAAATG 59.633 50.000 12.86 0.00 37.29 2.32
468 501 2.366916 CAGGAGTCCAGATAGGCGAAAT 59.633 50.000 12.86 0.00 37.29 2.17
469 502 1.757118 CAGGAGTCCAGATAGGCGAAA 59.243 52.381 12.86 0.00 37.29 3.46
470 503 1.403814 CAGGAGTCCAGATAGGCGAA 58.596 55.000 12.86 0.00 37.29 4.70
471 504 1.109920 GCAGGAGTCCAGATAGGCGA 61.110 60.000 12.86 0.00 37.29 5.54
472 505 1.365633 GCAGGAGTCCAGATAGGCG 59.634 63.158 12.86 0.00 37.29 5.52
473 506 0.833287 TTGCAGGAGTCCAGATAGGC 59.167 55.000 12.86 5.56 37.29 3.93
474 507 2.237143 TGTTTGCAGGAGTCCAGATAGG 59.763 50.000 12.86 0.00 39.47 2.57
475 508 3.616956 TGTTTGCAGGAGTCCAGATAG 57.383 47.619 12.86 0.00 0.00 2.08
476 509 4.517285 GAATGTTTGCAGGAGTCCAGATA 58.483 43.478 12.86 0.00 0.00 1.98
477 510 3.350833 GAATGTTTGCAGGAGTCCAGAT 58.649 45.455 12.86 0.00 0.00 2.90
478 511 2.553028 GGAATGTTTGCAGGAGTCCAGA 60.553 50.000 12.86 0.00 0.00 3.86
479 512 1.815003 GGAATGTTTGCAGGAGTCCAG 59.185 52.381 12.86 4.18 0.00 3.86
480 513 1.425066 AGGAATGTTTGCAGGAGTCCA 59.575 47.619 12.86 0.00 0.00 4.02
481 514 2.206576 AGGAATGTTTGCAGGAGTCC 57.793 50.000 0.00 0.00 0.00 3.85
482 515 5.904362 AATAAGGAATGTTTGCAGGAGTC 57.096 39.130 0.00 0.00 0.00 3.36
483 516 6.670695 AAAATAAGGAATGTTTGCAGGAGT 57.329 33.333 0.00 0.00 0.00 3.85
484 517 6.930722 ACAAAAATAAGGAATGTTTGCAGGAG 59.069 34.615 1.44 0.00 43.88 3.69
485 518 6.825610 ACAAAAATAAGGAATGTTTGCAGGA 58.174 32.000 1.44 0.00 43.88 3.86
486 519 6.930722 AGACAAAAATAAGGAATGTTTGCAGG 59.069 34.615 1.44 0.00 43.88 4.85
487 520 7.951530 AGACAAAAATAAGGAATGTTTGCAG 57.048 32.000 1.44 0.00 43.88 4.41
488 521 8.610896 CAAAGACAAAAATAAGGAATGTTTGCA 58.389 29.630 1.44 0.00 43.88 4.08
489 522 8.611757 ACAAAGACAAAAATAAGGAATGTTTGC 58.388 29.630 1.44 0.00 43.88 3.68
494 527 9.437045 GCAAAACAAAGACAAAAATAAGGAATG 57.563 29.630 0.00 0.00 0.00 2.67
495 528 9.171877 TGCAAAACAAAGACAAAAATAAGGAAT 57.828 25.926 0.00 0.00 0.00 3.01
496 529 8.553459 TGCAAAACAAAGACAAAAATAAGGAA 57.447 26.923 0.00 0.00 0.00 3.36
497 530 7.279758 CCTGCAAAACAAAGACAAAAATAAGGA 59.720 33.333 0.00 0.00 0.00 3.36
498 531 7.279758 TCCTGCAAAACAAAGACAAAAATAAGG 59.720 33.333 0.00 0.00 0.00 2.69
499 532 8.195617 TCCTGCAAAACAAAGACAAAAATAAG 57.804 30.769 0.00 0.00 0.00 1.73
500 533 8.037758 TCTCCTGCAAAACAAAGACAAAAATAA 58.962 29.630 0.00 0.00 0.00 1.40
501 534 7.551585 TCTCCTGCAAAACAAAGACAAAAATA 58.448 30.769 0.00 0.00 0.00 1.40
502 535 6.405538 TCTCCTGCAAAACAAAGACAAAAAT 58.594 32.000 0.00 0.00 0.00 1.82
503 536 5.788450 TCTCCTGCAAAACAAAGACAAAAA 58.212 33.333 0.00 0.00 0.00 1.94
504 537 5.398603 TCTCCTGCAAAACAAAGACAAAA 57.601 34.783 0.00 0.00 0.00 2.44
505 538 5.398603 TTCTCCTGCAAAACAAAGACAAA 57.601 34.783 0.00 0.00 0.00 2.83
506 539 5.398603 TTTCTCCTGCAAAACAAAGACAA 57.601 34.783 0.00 0.00 0.00 3.18
507 540 5.596836 ATTTCTCCTGCAAAACAAAGACA 57.403 34.783 0.00 0.00 0.00 3.41
508 541 7.653311 ACATAATTTCTCCTGCAAAACAAAGAC 59.347 33.333 0.00 0.00 0.00 3.01
509 542 7.725251 ACATAATTTCTCCTGCAAAACAAAGA 58.275 30.769 0.00 0.00 0.00 2.52
510 543 7.951530 ACATAATTTCTCCTGCAAAACAAAG 57.048 32.000 0.00 0.00 0.00 2.77
511 544 8.729805 AAACATAATTTCTCCTGCAAAACAAA 57.270 26.923 0.00 0.00 0.00 2.83
512 545 8.610896 CAAAACATAATTTCTCCTGCAAAACAA 58.389 29.630 0.00 0.00 0.00 2.83
513 546 7.984050 TCAAAACATAATTTCTCCTGCAAAACA 59.016 29.630 0.00 0.00 0.00 2.83
514 547 8.275632 GTCAAAACATAATTTCTCCTGCAAAAC 58.724 33.333 0.00 0.00 0.00 2.43
515 548 7.440856 GGTCAAAACATAATTTCTCCTGCAAAA 59.559 33.333 0.00 0.00 0.00 2.44
516 549 6.928492 GGTCAAAACATAATTTCTCCTGCAAA 59.072 34.615 0.00 0.00 0.00 3.68
517 550 6.041409 TGGTCAAAACATAATTTCTCCTGCAA 59.959 34.615 0.00 0.00 0.00 4.08
518 551 5.538053 TGGTCAAAACATAATTTCTCCTGCA 59.462 36.000 0.00 0.00 0.00 4.41
519 552 6.024552 TGGTCAAAACATAATTTCTCCTGC 57.975 37.500 0.00 0.00 0.00 4.85
520 553 7.260603 GGATGGTCAAAACATAATTTCTCCTG 58.739 38.462 0.00 0.00 0.00 3.86
521 554 6.381133 GGGATGGTCAAAACATAATTTCTCCT 59.619 38.462 0.00 0.00 0.00 3.69
522 555 6.154363 TGGGATGGTCAAAACATAATTTCTCC 59.846 38.462 0.00 0.00 0.00 3.71
523 556 7.035612 GTGGGATGGTCAAAACATAATTTCTC 58.964 38.462 0.00 0.00 0.00 2.87
524 557 6.496565 TGTGGGATGGTCAAAACATAATTTCT 59.503 34.615 0.00 0.00 0.00 2.52
525 558 6.696411 TGTGGGATGGTCAAAACATAATTTC 58.304 36.000 0.00 0.00 0.00 2.17
526 559 6.678568 TGTGGGATGGTCAAAACATAATTT 57.321 33.333 0.00 0.00 0.00 1.82
527 560 6.872585 ATGTGGGATGGTCAAAACATAATT 57.127 33.333 0.00 0.00 0.00 1.40
528 561 6.323739 GGTATGTGGGATGGTCAAAACATAAT 59.676 38.462 0.00 0.00 33.60 1.28
529 562 5.654650 GGTATGTGGGATGGTCAAAACATAA 59.345 40.000 0.00 0.00 33.60 1.90
530 563 5.197451 GGTATGTGGGATGGTCAAAACATA 58.803 41.667 0.00 0.00 31.19 2.29
531 564 4.023291 GGTATGTGGGATGGTCAAAACAT 58.977 43.478 0.00 0.00 33.18 2.71
532 565 3.426615 GGTATGTGGGATGGTCAAAACA 58.573 45.455 0.00 0.00 0.00 2.83
533 566 2.422127 CGGTATGTGGGATGGTCAAAAC 59.578 50.000 0.00 0.00 0.00 2.43
534 567 2.306219 TCGGTATGTGGGATGGTCAAAA 59.694 45.455 0.00 0.00 0.00 2.44
535 568 1.909986 TCGGTATGTGGGATGGTCAAA 59.090 47.619 0.00 0.00 0.00 2.69
536 569 1.574263 TCGGTATGTGGGATGGTCAA 58.426 50.000 0.00 0.00 0.00 3.18
537 570 1.801242 ATCGGTATGTGGGATGGTCA 58.199 50.000 0.00 0.00 0.00 4.02
538 571 5.187186 ACTTATATCGGTATGTGGGATGGTC 59.813 44.000 0.00 0.00 0.00 4.02
539 572 5.091552 ACTTATATCGGTATGTGGGATGGT 58.908 41.667 0.00 0.00 0.00 3.55
540 573 5.677319 ACTTATATCGGTATGTGGGATGG 57.323 43.478 0.00 0.00 0.00 3.51
541 574 6.590292 GTCAACTTATATCGGTATGTGGGATG 59.410 42.308 0.00 0.00 0.00 3.51
542 575 6.269077 TGTCAACTTATATCGGTATGTGGGAT 59.731 38.462 0.00 0.00 0.00 3.85
543 576 5.599242 TGTCAACTTATATCGGTATGTGGGA 59.401 40.000 0.00 0.00 0.00 4.37
544 577 5.849510 TGTCAACTTATATCGGTATGTGGG 58.150 41.667 0.00 0.00 0.00 4.61
545 578 7.095229 CCAATGTCAACTTATATCGGTATGTGG 60.095 40.741 0.00 0.00 0.00 4.17
546 579 7.655732 TCCAATGTCAACTTATATCGGTATGTG 59.344 37.037 0.00 0.00 0.00 3.21
547 580 7.732025 TCCAATGTCAACTTATATCGGTATGT 58.268 34.615 0.00 0.00 0.00 2.29
548 581 8.659491 CATCCAATGTCAACTTATATCGGTATG 58.341 37.037 0.00 0.00 0.00 2.39
549 582 7.824289 CCATCCAATGTCAACTTATATCGGTAT 59.176 37.037 0.00 0.00 0.00 2.73
550 583 7.158697 CCATCCAATGTCAACTTATATCGGTA 58.841 38.462 0.00 0.00 0.00 4.02
551 584 5.997746 CCATCCAATGTCAACTTATATCGGT 59.002 40.000 0.00 0.00 0.00 4.69
552 585 5.106555 GCCATCCAATGTCAACTTATATCGG 60.107 44.000 0.00 0.00 0.00 4.18
553 586 5.702670 AGCCATCCAATGTCAACTTATATCG 59.297 40.000 0.00 0.00 0.00 2.92
554 587 7.516198 AAGCCATCCAATGTCAACTTATATC 57.484 36.000 0.00 0.00 0.00 1.63
555 588 7.516198 GAAGCCATCCAATGTCAACTTATAT 57.484 36.000 0.00 0.00 0.00 0.86
556 589 6.942532 GAAGCCATCCAATGTCAACTTATA 57.057 37.500 0.00 0.00 0.00 0.98
557 590 5.841957 GAAGCCATCCAATGTCAACTTAT 57.158 39.130 0.00 0.00 0.00 1.73
574 607 3.225940 CTCCCTTTGGATTATGGAAGCC 58.774 50.000 0.00 0.00 40.80 4.35
575 608 3.225940 CCTCCCTTTGGATTATGGAAGC 58.774 50.000 0.00 0.00 40.80 3.86
576 609 4.526438 ACCTCCCTTTGGATTATGGAAG 57.474 45.455 0.00 0.00 40.80 3.46
577 610 4.965283 AACCTCCCTTTGGATTATGGAA 57.035 40.909 0.00 0.00 40.80 3.53
578 611 4.965283 AAACCTCCCTTTGGATTATGGA 57.035 40.909 0.00 0.00 40.80 3.41
579 612 5.515106 TGTAAACCTCCCTTTGGATTATGG 58.485 41.667 0.00 0.00 40.80 2.74
580 613 5.594317 CCTGTAAACCTCCCTTTGGATTATG 59.406 44.000 0.00 0.00 40.80 1.90
581 614 5.255443 ACCTGTAAACCTCCCTTTGGATTAT 59.745 40.000 0.00 0.00 40.80 1.28
582 615 4.604490 ACCTGTAAACCTCCCTTTGGATTA 59.396 41.667 0.00 0.00 40.80 1.75
583 616 3.401342 ACCTGTAAACCTCCCTTTGGATT 59.599 43.478 0.00 0.00 40.80 3.01
584 617 2.993863 ACCTGTAAACCTCCCTTTGGAT 59.006 45.455 0.00 0.00 40.80 3.41
585 618 2.424793 ACCTGTAAACCTCCCTTTGGA 58.575 47.619 0.00 0.00 38.75 3.53
586 619 2.971901 ACCTGTAAACCTCCCTTTGG 57.028 50.000 0.00 0.00 0.00 3.28
587 620 4.530946 TCTCTACCTGTAAACCTCCCTTTG 59.469 45.833 0.00 0.00 0.00 2.77
588 621 4.531339 GTCTCTACCTGTAAACCTCCCTTT 59.469 45.833 0.00 0.00 0.00 3.11
589 622 4.095211 GTCTCTACCTGTAAACCTCCCTT 58.905 47.826 0.00 0.00 0.00 3.95
590 623 3.710724 GTCTCTACCTGTAAACCTCCCT 58.289 50.000 0.00 0.00 0.00 4.20
591 624 2.426381 CGTCTCTACCTGTAAACCTCCC 59.574 54.545 0.00 0.00 0.00 4.30
592 625 2.159268 GCGTCTCTACCTGTAAACCTCC 60.159 54.545 0.00 0.00 0.00 4.30
593 626 2.159268 GGCGTCTCTACCTGTAAACCTC 60.159 54.545 0.00 0.00 0.00 3.85
594 627 1.823610 GGCGTCTCTACCTGTAAACCT 59.176 52.381 0.00 0.00 0.00 3.50
595 628 1.823610 AGGCGTCTCTACCTGTAAACC 59.176 52.381 0.00 0.00 34.07 3.27
596 629 4.082571 TGTTAGGCGTCTCTACCTGTAAAC 60.083 45.833 0.00 0.00 36.77 2.01
597 630 4.081406 TGTTAGGCGTCTCTACCTGTAAA 58.919 43.478 0.00 0.00 36.77 2.01
598 631 3.689347 TGTTAGGCGTCTCTACCTGTAA 58.311 45.455 0.00 0.00 36.77 2.41
599 632 3.354948 TGTTAGGCGTCTCTACCTGTA 57.645 47.619 0.00 0.00 36.77 2.74
600 633 2.211250 TGTTAGGCGTCTCTACCTGT 57.789 50.000 0.00 0.00 36.77 4.00
601 634 2.492484 AGTTGTTAGGCGTCTCTACCTG 59.508 50.000 0.00 0.00 36.77 4.00
602 635 2.754002 GAGTTGTTAGGCGTCTCTACCT 59.246 50.000 0.00 0.00 40.24 3.08
603 636 2.159268 GGAGTTGTTAGGCGTCTCTACC 60.159 54.545 0.00 0.00 0.00 3.18
604 637 2.159268 GGGAGTTGTTAGGCGTCTCTAC 60.159 54.545 0.00 0.00 0.00 2.59
605 638 2.097825 GGGAGTTGTTAGGCGTCTCTA 58.902 52.381 0.00 0.00 0.00 2.43
606 639 0.896226 GGGAGTTGTTAGGCGTCTCT 59.104 55.000 0.00 0.00 0.00 3.10
607 640 0.458025 CGGGAGTTGTTAGGCGTCTC 60.458 60.000 0.00 0.00 0.00 3.36
608 641 1.183676 ACGGGAGTTGTTAGGCGTCT 61.184 55.000 0.00 0.00 43.33 4.18
609 642 1.291272 ACGGGAGTTGTTAGGCGTC 59.709 57.895 0.00 0.00 43.33 5.19
610 643 3.463345 ACGGGAGTTGTTAGGCGT 58.537 55.556 0.00 0.00 43.33 5.68
631 664 3.512516 GGGTTCTGCATGCTCGGC 61.513 66.667 20.33 6.79 0.00 5.54
633 666 2.046023 TGGGGTTCTGCATGCTCG 60.046 61.111 20.33 10.19 0.00 5.03
763 826 4.266739 TGTCGATGATATTGGAACGTTTCG 59.733 41.667 0.46 4.48 0.00 3.46
875 964 4.242475 TCAGTGTTAATCGTGTCATCCAC 58.758 43.478 0.00 0.00 40.89 4.02
931 1045 2.988684 TTGATGGTTGGTGCCGGC 60.989 61.111 22.73 22.73 0.00 6.13
1023 1188 0.988063 GGTGAGGGAGGCTCTTCTTT 59.012 55.000 15.23 0.00 0.00 2.52
1074 1255 2.672961 TGAATTCTGGTAGGCAGACG 57.327 50.000 7.05 0.00 0.00 4.18
1100 1308 0.846693 AGAAACTGGGCAGGTCTTGT 59.153 50.000 0.00 0.00 0.00 3.16
1377 1617 3.625897 CTCCACCCTGGTGTCGCA 61.626 66.667 14.89 0.00 44.02 5.10
1592 1833 0.385751 CCCAGAGACGCACGTATGAT 59.614 55.000 0.00 0.00 0.00 2.45
1593 1834 0.963856 ACCCAGAGACGCACGTATGA 60.964 55.000 0.00 0.00 0.00 2.15
1594 1835 0.108804 AACCCAGAGACGCACGTATG 60.109 55.000 0.00 0.00 0.00 2.39
1804 2104 0.105224 TCGGCGTTGAGAAGTTTGGA 59.895 50.000 6.85 0.00 0.00 3.53
1822 2122 2.680913 GCAGGCATGGTGTCACGTC 61.681 63.158 0.00 0.00 0.00 4.34
1937 2243 1.670674 CGTTAACCTTGCTGCCGTCTA 60.671 52.381 0.00 0.00 0.00 2.59
2070 2376 4.389077 AGAATGTTAGCCTCGAAAAGAACG 59.611 41.667 0.00 0.00 0.00 3.95
2091 2397 2.989253 TCAGCAAGGACGCCGAGA 60.989 61.111 0.00 0.00 0.00 4.04
2190 2496 1.617536 AGCCTCAATCTGCCCAGGA 60.618 57.895 0.00 0.00 0.00 3.86
2565 2871 4.154942 AGAGGTTTGAAGGTAGACCGTTA 58.845 43.478 0.00 0.00 42.08 3.18
2667 2973 0.912487 TCACCGGGTTGCCTAGGAAT 60.912 55.000 14.75 0.00 0.00 3.01
2891 3197 3.838244 TGTTGGTGCTTAGTGTCTTCT 57.162 42.857 0.00 0.00 0.00 2.85
2958 3264 1.154016 CTCGCGGTCGATTGTGAGT 60.154 57.895 17.43 0.00 44.56 3.41
2979 3285 3.488721 GGTCGTCTGCGTATGTGAATACT 60.489 47.826 0.00 0.00 39.49 2.12
3135 3441 3.862063 CTTCGGCAGCACAACACGC 62.862 63.158 0.00 0.00 0.00 5.34
3197 3503 0.108138 GGTGATACGGTTCTGCTGCT 60.108 55.000 0.00 0.00 0.00 4.24
3276 3582 1.550976 GATCGTGTCTTCTCCCCAGTT 59.449 52.381 0.00 0.00 0.00 3.16
3303 3609 1.807814 ACACCTTGTCCACCTCTTCT 58.192 50.000 0.00 0.00 0.00 2.85
3393 3699 3.510360 ACGTTGTTCAGCAGATAGGTAGT 59.490 43.478 0.00 0.00 0.00 2.73
3418 3725 8.535335 AGCACACTATCTTCTCTTCAATTTCTA 58.465 33.333 0.00 0.00 0.00 2.10
3511 3820 9.822185 AGCAAGTTTCAAAACATAATCTTTCTT 57.178 25.926 8.23 0.00 41.30 2.52
3518 3827 7.412137 GCAAGAGCAAGTTTCAAAACATAAT 57.588 32.000 8.23 0.00 39.99 1.28
3541 3855 0.317603 CAACAACAGCACAGCTCTGC 60.318 55.000 5.74 5.74 36.40 4.26
3681 4025 1.073923 ACCTCCACCAGACCATTTGAC 59.926 52.381 0.00 0.00 0.00 3.18
3701 4051 4.675976 TTCTTTGGACTGTTCGGAGTTA 57.324 40.909 0.00 0.00 0.00 2.24
3715 4073 4.334443 CACGCGAACAATAGATTCTTTGG 58.666 43.478 15.93 0.00 0.00 3.28
3735 4093 1.405105 ACATCGTAATGGCAATGGCAC 59.595 47.619 12.83 0.00 41.84 5.01
3752 4118 1.293498 GTGTCCTCAGTCCGCACAT 59.707 57.895 0.00 0.00 0.00 3.21
3757 4123 1.517257 GCATCGTGTCCTCAGTCCG 60.517 63.158 0.00 0.00 0.00 4.79
3829 4341 0.642291 CGTGTTGATGTCTAGCAGCG 59.358 55.000 0.00 0.00 36.02 5.18
3831 4343 3.128764 TCCTACGTGTTGATGTCTAGCAG 59.871 47.826 0.00 0.00 0.00 4.24
3832 4344 3.086282 TCCTACGTGTTGATGTCTAGCA 58.914 45.455 0.00 0.00 0.00 3.49
3833 4345 3.777465 TCCTACGTGTTGATGTCTAGC 57.223 47.619 0.00 0.00 0.00 3.42
3834 4346 4.045104 GCATCCTACGTGTTGATGTCTAG 58.955 47.826 18.73 0.00 38.47 2.43
3835 4347 3.445805 TGCATCCTACGTGTTGATGTCTA 59.554 43.478 18.73 8.44 38.47 2.59
3836 4348 2.233676 TGCATCCTACGTGTTGATGTCT 59.766 45.455 18.73 0.00 38.47 3.41
3837 4349 2.616960 TGCATCCTACGTGTTGATGTC 58.383 47.619 18.73 13.68 38.47 3.06
3838 4350 2.760634 TGCATCCTACGTGTTGATGT 57.239 45.000 18.73 0.00 38.47 3.06
3839 4351 3.789791 GCATTGCATCCTACGTGTTGATG 60.790 47.826 15.39 15.39 39.07 3.07
3840 4352 2.355756 GCATTGCATCCTACGTGTTGAT 59.644 45.455 3.15 0.00 0.00 2.57
3841 4353 1.737236 GCATTGCATCCTACGTGTTGA 59.263 47.619 3.15 0.00 0.00 3.18
3842 4354 1.202177 GGCATTGCATCCTACGTGTTG 60.202 52.381 11.39 0.00 0.00 3.33
3843 4355 1.094785 GGCATTGCATCCTACGTGTT 58.905 50.000 11.39 0.00 0.00 3.32
3845 4357 1.331756 GAAGGCATTGCATCCTACGTG 59.668 52.381 11.39 0.00 31.24 4.49
3846 4358 1.210478 AGAAGGCATTGCATCCTACGT 59.790 47.619 11.39 0.00 31.24 3.57
3847 4359 1.869767 GAGAAGGCATTGCATCCTACG 59.130 52.381 11.39 0.00 31.24 3.51
3848 4360 2.877168 CAGAGAAGGCATTGCATCCTAC 59.123 50.000 11.39 3.70 31.24 3.18
3851 4363 2.048444 TCAGAGAAGGCATTGCATCC 57.952 50.000 11.39 0.00 0.00 3.51
3881 4414 9.967245 GAAATTTGTAAACAGAAAACTGAAACC 57.033 29.630 0.00 0.00 0.00 3.27
3888 4421 9.567848 TCAGACTGAAATTTGTAAACAGAAAAC 57.432 29.630 1.64 1.35 33.53 2.43
3921 4484 5.033589 AGACTCTGCAATCCTTATTCCAG 57.966 43.478 0.00 0.00 32.90 3.86
3973 4541 3.055240 CCTTTCAGAACAGAGAGAGCCAT 60.055 47.826 0.00 0.00 0.00 4.40
3976 4544 3.006323 TGACCTTTCAGAACAGAGAGAGC 59.994 47.826 0.00 0.00 0.00 4.09
4067 4636 4.853468 TTCCTGCTCATATGTTTACCCA 57.147 40.909 1.90 0.00 0.00 4.51
4082 4651 6.428159 CACCTATGGATTTAGTGTATTCCTGC 59.572 42.308 0.00 0.00 0.00 4.85
4156 4726 3.270877 GTGGGAGTTGTAAGCACCATAG 58.729 50.000 0.00 0.00 0.00 2.23
4160 4730 1.880027 CTTGTGGGAGTTGTAAGCACC 59.120 52.381 0.00 0.00 0.00 5.01
4173 4743 7.526142 TCTATAGTGCTATTAGACTTGTGGG 57.474 40.000 0.00 0.00 0.00 4.61
4237 4812 7.756722 CAGTTTTCTATCCAAAGCAAATACCAG 59.243 37.037 0.00 0.00 0.00 4.00
4252 4827 5.373812 TCCCAAGATCCCAGTTTTCTATC 57.626 43.478 0.00 0.00 0.00 2.08
4259 4834 4.044571 TCTGAAAATCCCAAGATCCCAGTT 59.955 41.667 0.00 0.00 30.97 3.16
4262 4837 3.851976 TCTCTGAAAATCCCAAGATCCCA 59.148 43.478 0.00 0.00 0.00 4.37
4278 4853 9.140874 ACTAGAACATCATTATGTGATCTCTGA 57.859 33.333 0.00 0.00 45.79 3.27
4303 4878 9.694137 CATAAGTAAGCCCAGTAATACTAGAAC 57.306 37.037 0.00 0.00 0.00 3.01
4311 7627 6.308015 TGTGTCATAAGTAAGCCCAGTAAT 57.692 37.500 0.00 0.00 0.00 1.89
4318 7634 6.316140 TGATTGTCATGTGTCATAAGTAAGCC 59.684 38.462 0.00 0.00 0.00 4.35
4351 7667 6.723298 TGTGGATTATGGTTTTGTTCACTT 57.277 33.333 0.00 0.00 0.00 3.16
4405 7724 6.699575 GACTTATGTCCCATGCTAATTGTT 57.300 37.500 0.00 0.00 37.24 2.83
4454 7801 7.676004 TCAGTTGTGTCTTTCCTATGAACATA 58.324 34.615 0.00 0.00 0.00 2.29
4455 7802 6.533730 TCAGTTGTGTCTTTCCTATGAACAT 58.466 36.000 0.00 0.00 0.00 2.71
4474 7821 4.692625 CGTGGTTCTTTCAGATCATCAGTT 59.307 41.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.