AutoCloner

Multiple sequence alignment - TraesCS1B01G048200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G048200	chr1B	100.000	4263	0	0	1	4263	28325718	28321456	0.000000e+00	7873.0
1	TraesCS1B01G048200	chr1B	91.649	3257	181	30	487	3660	28309079	28305831	0.000000e+00	4423.0
2	TraesCS1B01G048200	chr1B	91.724	2767	189	28	813	3559	28376003	28373257	0.000000e+00	3805.0
3	TraesCS1B01G048200	chr1B	86.640	2949	319	35	702	3606	28483401	28486318	0.000000e+00	3193.0
4	TraesCS1B01G048200	chr1B	95.230	608	21	4	3656	4263	28305787	28305188	0.000000e+00	955.0
5	TraesCS1B01G048200	chr1B	86.719	384	39	9	6	383	28309563	28309186	2.370000e-112	416.0
6	TraesCS1B01G048200	chr1B	84.512	297	26	10	103	381	28376691	28376397	4.200000e-70	276.0
7	TraesCS1B01G048200	chr1B	87.562	201	21	1	3713	3909	28373140	28372940	3.320000e-56	230.0
8	TraesCS1B01G048200	chr1B	81.557	244	28	13	3973	4215	28441273	28441046	7.280000e-43	185.0
9	TraesCS1B01G048200	chr1B	88.971	136	7	4	553	683	28483221	28483353	1.230000e-35	161.0
10	TraesCS1B01G048200	chr1B	86.813	91	5	2	401	484	28309200	28309110	1.260000e-15	95.3
11	TraesCS1B01G048200	chr1D	93.966	2801	151	12	758	3545	19002730	18999935	0.000000e+00	4220.0
12	TraesCS1B01G048200	chr1D	89.491	2769	235	20	806	3544	19021005	19018263	0.000000e+00	3450.0
13	TraesCS1B01G048200	chr1D	86.974	2802	290	45	550	3299	19022003	19024781	0.000000e+00	3083.0
14	TraesCS1B01G048200	chr1D	91.268	1317	97	7	2345	3660	19013249	19011950	0.000000e+00	1779.0
15	TraesCS1B01G048200	chr1D	86.429	280	25	6	103	374	19015411	19015137	1.160000e-75	294.0
16	TraesCS1B01G048200	chr1D	83.270	263	24	10	1	244	19004589	19004328	1.540000e-54	224.0
17	TraesCS1B01G048200	chr1D	85.915	213	18	8	1	202	19005526	19005315	2.580000e-52	217.0
18	TraesCS1B01G048200	chr1D	85.308	211	21	3	3703	3909	19011867	19011663	4.320000e-50	209.0
19	TraesCS1B01G048200	chr1D	76.718	262	29	22	422	653	19015133	19014874	2.690000e-22	117.0
20	TraesCS1B01G048200	chr1D	97.917	48	1	0	435	482	19003182	19003135	2.730000e-12	84.2
21	TraesCS1B01G048200	chr1D	81.308	107	14	4	3649	3755	19034743	19034843	9.820000e-12	82.4
22	TraesCS1B01G048200	chr1D	85.075	67	6	3	3598	3660	19018236	19018170	9.890000e-07	65.8
23	TraesCS1B01G048200	chr1D	97.143	35	1	0	651	685	19043504	19043538	4.600000e-05	60.2
24	TraesCS1B01G048200	chr1A	92.008	2828	182	24	832	3626	20927555	20924739	0.000000e+00	3930.0
25	TraesCS1B01G048200	chr1A	88.579	2758	250	31	806	3526	20932688	20929959	0.000000e+00	3288.0
26	TraesCS1B01G048200	chr1A	85.904	2859	322	44	789	3600	20935346	20938170	0.000000e+00	2972.0
27	TraesCS1B01G048200	chr1A	92.647	476	33	2	3790	4263	20924743	20924268	0.000000e+00	684.0
28	TraesCS1B01G048200	chr1A	87.742	155	18	1	4101	4255	20929207	20929054	3.390000e-41	180.0
29	TraesCS1B01G048200	chr1A	93.333	45	3	0	443	487	20927970	20927926	2.750000e-07	67.6
30	TraesCS1B01G048200	chr4A	93.619	2586	135	18	982	3545	675285704	675283127	0.000000e+00	3834.0
31	TraesCS1B01G048200	chr4A	93.816	566	26	3	3656	4214	675283074	675282511	0.000000e+00	843.0
32	TraesCS1B01G048200	chr4A	94.761	439	23	0	3825	4263	675282509	675282071	0.000000e+00	684.0
33	TraesCS1B01G048200	chr5B	91.592	2688	196	14	979	3660	641833325	641835988	0.000000e+00	3685.0
34	TraesCS1B01G048200	chr5B	90.215	2647	212	22	1041	3660	641822239	641824865	0.000000e+00	3410.0
35	TraesCS1B01G048200	chr5B	85.612	139	17	2	4101	4237	641825449	641825586	4.440000e-30	143.0
36	TraesCS1B01G048200	chr5B	94.318	88	5	0	598	685	641817991	641817904	7.440000e-28	135.0
37	TraesCS1B01G048200	chrUn	93.640	566	27	3	3656	4214	305780582	305780019	0.000000e+00	837.0
38	TraesCS1B01G048200	chrUn	94.989	439	22	0	3825	4263	305780017	305779579	0.000000e+00	689.0
39	TraesCS1B01G048200	chrUn	91.423	513	21	6	3054	3545	305781145	305780635	0.000000e+00	682.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G048200	chr1B	28321456	28325718	4262	True	7873.000	7873	100.000000	1	4263	1	chr1B.!!$R1	4262
1	TraesCS1B01G048200	chr1B	28483221	28486318	3097	False	1677.000	3193	87.805500	553	3606	2	chr1B.!!$F1	3053
2	TraesCS1B01G048200	chr1B	28305188	28309563	4375	True	1472.325	4423	90.102750	6	4263	4	chr1B.!!$R3	4257
3	TraesCS1B01G048200	chr1B	28372940	28376691	3751	True	1437.000	3805	87.932667	103	3909	3	chr1B.!!$R4	3806
4	TraesCS1B01G048200	chr1D	19022003	19024781	2778	False	3083.000	3083	86.974000	550	3299	1	chr1D.!!$F1	2749
5	TraesCS1B01G048200	chr1D	18999935	19005526	5591	True	1186.300	4220	90.267000	1	3545	4	chr1D.!!$R1	3544
6	TraesCS1B01G048200	chr1D	19011663	19021005	9342	True	985.800	3450	85.714833	103	3909	6	chr1D.!!$R2	3806
7	TraesCS1B01G048200	chr1A	20935346	20938170	2824	False	2972.000	2972	85.904000	789	3600	1	chr1A.!!$F1	2811
8	TraesCS1B01G048200	chr1A	20924268	20932688	8420	True	1629.920	3930	90.861800	443	4263	5	chr1A.!!$R1	3820
9	TraesCS1B01G048200	chr4A	675282071	675285704	3633	True	1787.000	3834	94.065333	982	4263	3	chr4A.!!$R1	3281
10	TraesCS1B01G048200	chr5B	641833325	641835988	2663	False	3685.000	3685	91.592000	979	3660	1	chr5B.!!$F1	2681
11	TraesCS1B01G048200	chr5B	641822239	641825586	3347	False	1776.500	3410	87.913500	1041	4237	2	chr5B.!!$F2	3196
12	TraesCS1B01G048200	chrUn	305779579	305781145	1566	True	736.000	837	93.350667	3054	4263	3	chrUn.!!$R1	1209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
386	2400	0.027979	CGGAATACGCCTCGTCGTAA	59.972	55.0	10.20	0.00	46.25	3.18	F
389	2403	0.101219	AATACGCCTCGTCGTAACCC	59.899	55.0	10.20	0.00	46.25	4.11	F
391	2405	0.107897	TACGCCTCGTCGTAACCCTA	60.108	55.0	0.00	0.00	41.33	3.53	F
393	2407	0.171007	CGCCTCGTCGTAACCCTAAA	59.829	55.0	0.00	0.00	0.00	1.85	F
947	3193	0.254178	ACCAGAATTCATCCAGCGCT	59.746	50.0	2.64	2.64	0.00	5.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1549	8971	1.229428	CAGGCAGAACATGTTCGTGT	58.771	50.000	28.18	12.28	43.97	4.49	R
2797	10219	0.833409	TGAGCAGCAGGTCCTTCTCA	60.833	55.000	5.81	0.00	41.53	3.27	R
2864	10286	0.327924	TGCATCAGTGGGTAGTTGGG	59.672	55.000	0.00	0.00	0.00	4.12	R
3154	10576	1.296715	CTTGTCCACCTCTTCCCCG	59.703	63.158	0.00	0.00	0.00	5.73	R
3525	17245	1.208535	ACTGTTCGGTGTTGTCTCCAA	59.791	47.619	0.00	0.00	0.00	3.53	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	49	0.033011	TCCTCCTCCTTCCTTCTCCG	60.033	60.000	0.00	0.00	0.00	4.63
76	78	5.066968	TCAACTGACCCAAACTGAAAAAC	57.933	39.130	0.00	0.00	0.00	2.43
95	107	1.343478	ACCAGGCACTCACCTATAGCT	60.343	52.381	0.00	0.00	38.26	3.32
98	110	3.194542	CCAGGCACTCACCTATAGCTATC	59.805	52.174	10.16	0.00	38.26	2.08
128	1084	5.654603	AATATAGACACACACGACTTGGA	57.345	39.130	0.00	0.00	0.00	3.53
192	1151	1.455402	TGTGGCATGCTTGTGGTGT	60.455	52.632	18.92	0.00	0.00	4.16
231	1190	0.626382	AGGACTGACGAGAGGATGGA	59.374	55.000	0.00	0.00	0.00	3.41
236	1195	0.526211	TGACGAGAGGATGGACGTTG	59.474	55.000	0.00	0.00	39.04	4.10
238	1197	1.741706	GACGAGAGGATGGACGTTGTA	59.258	52.381	0.00	0.00	39.04	2.41
248	2243	7.333672	AGAGGATGGACGTTGTATTTTTCTAAC	59.666	37.037	0.00	0.00	0.00	2.34
292	2297	6.826741	AGAAAACTAAGTCAAGTGGCACTAAA	59.173	34.615	22.37	9.26	0.00	1.85
321	2326	2.079158	CAGGTCAAGTGGCACTGTATG	58.921	52.381	22.83	16.02	0.00	2.39
335	2340	1.196808	CTGTATGTTTCACACGGTGGC	59.803	52.381	13.48	0.00	33.87	5.01
374	2388	1.467342	GACCAGTGCAAACCGGAATAC	59.533	52.381	9.46	0.00	0.00	1.89
375	2389	0.446222	CCAGTGCAAACCGGAATACG	59.554	55.000	9.46	0.00	43.80	3.06
381	2395	0.738412	CAAACCGGAATACGCCTCGT	60.738	55.000	9.46	0.00	44.35	4.18
382	2396	0.459063	AAACCGGAATACGCCTCGTC	60.459	55.000	9.46	0.00	41.54	4.20
384	2398	2.406401	CGGAATACGCCTCGTCGT	59.594	61.111	0.00	5.61	45.49	4.34
386	2400	0.027979	CGGAATACGCCTCGTCGTAA	59.972	55.000	10.20	0.00	46.25	3.18
387	2401	1.470940	GGAATACGCCTCGTCGTAAC	58.529	55.000	10.20	8.17	46.25	2.50
388	2402	1.470940	GAATACGCCTCGTCGTAACC	58.529	55.000	10.20	3.94	46.25	2.85
389	2403	0.101219	AATACGCCTCGTCGTAACCC	59.899	55.000	10.20	0.00	46.25	4.11
390	2404	0.749454	ATACGCCTCGTCGTAACCCT	60.749	55.000	10.20	0.00	46.25	4.34
391	2405	0.107897	TACGCCTCGTCGTAACCCTA	60.108	55.000	0.00	0.00	41.33	3.53
392	2406	0.960364	ACGCCTCGTCGTAACCCTAA	60.960	55.000	0.00	0.00	41.36	2.69
393	2407	0.171007	CGCCTCGTCGTAACCCTAAA	59.829	55.000	0.00	0.00	0.00	1.85
394	2408	1.402720	CGCCTCGTCGTAACCCTAAAA	60.403	52.381	0.00	0.00	0.00	1.52
395	2409	2.687370	GCCTCGTCGTAACCCTAAAAA	58.313	47.619	0.00	0.00	0.00	1.94
415	2429	1.636988	AAAAGGAATACGCCTCGTCG	58.363	50.000	0.00	0.00	41.54	5.12
433	2447	0.517316	CGTTTAGCTCACTTGCACCC	59.483	55.000	0.00	0.00	34.99	4.61
534	2587	7.329588	TCATTAGCTGATAAGAACTCGTGTA	57.670	36.000	0.00	0.00	0.00	2.90
621	2725	3.091633	AGTTTATGCATTGTGGAGGCT	57.908	42.857	3.54	0.00	35.70	4.58
685	2792	9.731819	ATACGACACATGTTTACATTAGTAGAG	57.268	33.333	0.00	0.00	33.61	2.43
686	2793	7.033791	ACGACACATGTTTACATTAGTAGAGG	58.966	38.462	0.00	0.00	33.61	3.69
694	2858	8.492673	TGTTTACATTAGTAGAGGAAATGCAG	57.507	34.615	0.00	0.00	34.63	4.41
849	3077	1.850345	CCCTGCCTATTTAACCCCTCA	59.150	52.381	0.00	0.00	0.00	3.86
863	3091	1.696965	CCCCTCATCTCCCTCCATTCA	60.697	57.143	0.00	0.00	0.00	2.57
864	3092	1.419387	CCCTCATCTCCCTCCATTCAC	59.581	57.143	0.00	0.00	0.00	3.18
873	3101	1.065126	CCCTCCATTCACCTCCAAGAC	60.065	57.143	0.00	0.00	0.00	3.01
895	3127	1.292242	AGCCTCCCTCACCTTCATCTA	59.708	52.381	0.00	0.00	0.00	1.98
947	3193	0.254178	ACCAGAATTCATCCAGCGCT	59.746	50.000	2.64	2.64	0.00	5.92
999	3263	4.350368	TCCTACTTCTTTGCACATCACA	57.650	40.909	0.00	0.00	0.00	3.58
1014	3278	2.084610	TCACAATGGAGTGCGAGAAG	57.915	50.000	0.00	0.00	39.35	2.85
1128	3392	2.361104	GGGAGCCATTTGGACGCA	60.361	61.111	0.00	0.00	37.39	5.24
1406	8789	2.891580	GGGAGCTCATCAGGTACGAATA	59.108	50.000	17.19	0.00	30.71	1.75
1461	8866	2.753452	TGTTGATCGTCCTGTACTCCTC	59.247	50.000	0.00	0.00	0.00	3.71
1462	8867	2.753452	GTTGATCGTCCTGTACTCCTCA	59.247	50.000	0.00	0.00	0.00	3.86
2797	10219	0.673333	TCCACAATGCGCGATTCTGT	60.673	50.000	12.10	3.72	0.00	3.41
2864	10286	2.743928	CAGACGACCCTTGCAGCC	60.744	66.667	0.00	0.00	0.00	4.85
3070	10492	0.458543	CGCAGCAGAACCGTATCACT	60.459	55.000	0.00	0.00	0.00	3.41
3400	17079	3.244526	TGGAACATTCTTACAGAGCTGCA	60.245	43.478	1.02	0.00	0.00	4.41
3402	17081	4.378874	GGAACATTCTTACAGAGCTGCAAC	60.379	45.833	1.02	0.00	0.00	4.17
3406	17085	3.653539	TCTTACAGAGCTGCAACGTTA	57.346	42.857	0.00	0.00	0.00	3.18
3681	17484	3.973657	CATGTAATGGAAGCAGGATTGC	58.026	45.455	0.00	0.00	45.44	3.56
3706	17509	6.854091	AAGTGTTTTGGTTTGGGTTTACTA	57.146	33.333	0.00	0.00	0.00	1.82
3819	17631	2.807967	TGAACCTTGTGAGAAATCGCAG	59.192	45.455	0.00	0.00	0.00	5.18
3870	17682	2.493278	CCTTGAATGAAATCGGCCAAGT	59.507	45.455	2.24	0.00	31.73	3.16
3881	17693	6.879993	TGAAATCGGCCAAGTGTACTTAAATA	59.120	34.615	2.24	0.00	34.28	1.40
3910	17722	4.866508	TCTATCCCACTTACGCTAATGG	57.133	45.455	0.00	0.00	0.00	3.16
4193	18454	2.967270	GCCAAAGGCTCCATGAACT	58.033	52.632	0.00	0.00	46.69	3.01
4242	18503	9.988815	GAAGATATATGGCTCTTCTTTAGTTCA	57.011	33.333	13.26	0.00	42.58	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	1.938926	GCACAAGACTGAGGCTGAGAC	60.939	57.143	8.31	0.74	0.00	3.36
15	17	0.472734	AGGAGGACAGGCACAAGACT	60.473	55.000	0.00	0.00	0.00	3.24
47	49	5.241506	TCAGTTTGGGTCAGTTGATTTCATC	59.758	40.000	0.00	0.00	0.00	2.92
76	78	1.418334	AGCTATAGGTGAGTGCCTGG	58.582	55.000	3.03	0.00	39.60	4.45
95	107	6.581166	GTGTGTGTCTATATTTCATCGCGATA	59.419	38.462	23.22	6.94	0.00	2.92
98	110	4.374013	CGTGTGTGTCTATATTTCATCGCG	60.374	45.833	0.00	0.00	0.00	5.87
138	1094	2.078849	TATGCGTGAGTGGTCAAGTG	57.921	50.000	0.00	0.00	34.87	3.16
192	1151	4.070818	GCGCGCACATGTGAACGA	62.071	61.111	32.22	0.00	33.99	3.85
231	1190	9.505995	AAACGATTTGTTAGAAAAATACAACGT	57.494	25.926	0.00	0.00	40.84	3.99
236	1195	9.673454	AGTGGAAACGATTTGTTAGAAAAATAC	57.327	29.630	0.00	0.00	40.84	1.89
238	1197	8.410141	TCAGTGGAAACGATTTGTTAGAAAAAT	58.590	29.630	0.00	0.00	40.84	1.82
248	2243	5.611796	TTCTCATCAGTGGAAACGATTTG	57.388	39.130	0.00	0.00	0.00	2.32
292	2297	2.242043	CCACTTGACCTGCCAGATTTT	58.758	47.619	0.00	0.00	0.00	1.82
321	2326	1.231221	TGTATGCCACCGTGTGAAAC	58.769	50.000	5.71	0.00	35.23	2.78
344	2358	2.125512	CACTGGTCCTAGCGCACC	60.126	66.667	11.47	9.24	0.00	5.01
346	2360	2.390306	TTTGCACTGGTCCTAGCGCA	62.390	55.000	11.47	0.00	34.24	6.09
374	2388	0.171007	TTTAGGGTTACGACGAGGCG	59.829	55.000	0.00	0.00	37.29	5.52
375	2389	2.368655	TTTTAGGGTTACGACGAGGC	57.631	50.000	0.00	0.00	0.00	4.70
395	2409	1.997606	CGACGAGGCGTATTCCTTTTT	59.002	47.619	0.00	0.00	41.37	1.94
396	2410	1.067354	ACGACGAGGCGTATTCCTTTT	60.067	47.619	0.55	0.00	43.61	2.27
397	2411	0.529378	ACGACGAGGCGTATTCCTTT	59.471	50.000	0.55	0.00	43.61	3.11
398	2412	0.529378	AACGACGAGGCGTATTCCTT	59.471	50.000	3.77	0.00	44.86	3.36
399	2413	0.529378	AAACGACGAGGCGTATTCCT	59.471	50.000	3.77	0.00	44.86	3.36
406	2420	1.154093	TGAGCTAAACGACGAGGCG	60.154	57.895	0.00	0.00	37.29	5.52
407	2421	0.109226	AGTGAGCTAAACGACGAGGC	60.109	55.000	0.00	0.00	0.00	4.70
415	2429	1.266989	GTGGGTGCAAGTGAGCTAAAC	59.733	52.381	0.00	0.00	34.99	2.01
433	2447	0.875908	CGTGCTCGGTCATATGGGTG	60.876	60.000	2.13	0.00	0.00	4.61
485	2537	9.770097	GATCCATAAAGAGATATCACTTTCACA	57.230	33.333	25.36	13.14	37.76	3.58
504	2556	8.246871	CGAGTTCTTATCAGCTAATGATCCATA	58.753	37.037	0.00	0.00	46.01	2.74
518	2571	5.250982	TCTGGACTACACGAGTTCTTATCA	58.749	41.667	0.00	0.00	39.06	2.15
524	2577	1.540267	TGCTCTGGACTACACGAGTTC	59.460	52.381	0.00	0.00	39.06	3.01
621	2725	1.028130	TTCAAACAAGCGTGATGGCA	58.972	45.000	6.65	0.00	34.64	4.92
685	2792	3.253188	TGTGTTCAACTAGCTGCATTTCC	59.747	43.478	1.02	0.00	0.00	3.13
686	2793	4.222114	GTGTGTTCAACTAGCTGCATTTC	58.778	43.478	1.02	0.00	0.00	2.17
694	2858	2.354510	TGTGCTTGTGTGTTCAACTAGC	59.645	45.455	3.55	3.55	0.00	3.42
849	3077	1.010046	TGGAGGTGAATGGAGGGAGAT	59.990	52.381	0.00	0.00	0.00	2.75
863	3091	1.985116	GGAGGCTCGTCTTGGAGGT	60.985	63.158	8.69	0.00	34.56	3.85
864	3092	2.726351	GGGAGGCTCGTCTTGGAGG	61.726	68.421	8.69	0.00	34.56	4.30
873	3101	1.333636	ATGAAGGTGAGGGAGGCTCG	61.334	60.000	8.69	0.00	0.00	5.03
895	3127	1.102154	CTGGAGAGAGCTCACGATGT	58.898	55.000	17.77	0.00	43.14	3.06
947	3193	0.984230	CTGGAAACTGGGCAGGTCTA	59.016	55.000	0.00	0.00	0.00	2.59
999	3263	1.134848	GCTCTCTTCTCGCACTCCATT	60.135	52.381	0.00	0.00	0.00	3.16
1014	3278	4.527157	GCGGCAACATGCGCTCTC	62.527	66.667	9.73	0.00	46.21	3.20
1038	3302	3.364441	GCCACGCACAAGCCATCA	61.364	61.111	0.00	0.00	37.52	3.07
1128	3392	1.513158	CTCGACCATCCGCTTCACT	59.487	57.895	0.00	0.00	0.00	3.41
1215	8598	4.994471	CTGGTGTCGCTGCCAGCA	62.994	66.667	18.21	9.74	44.65	4.41
1471	8885	6.894103	ACAAGAAAATAAGGCTTCCAGATCAT	59.106	34.615	1.30	0.00	0.00	2.45
1549	8971	1.229428	CAGGCAGAACATGTTCGTGT	58.771	50.000	28.18	12.28	43.97	4.49
2797	10219	0.833409	TGAGCAGCAGGTCCTTCTCA	60.833	55.000	5.81	0.00	41.53	3.27
2864	10286	0.327924	TGCATCAGTGGGTAGTTGGG	59.672	55.000	0.00	0.00	0.00	4.12
3154	10576	1.296715	CTTGTCCACCTCTTCCCCG	59.703	63.158	0.00	0.00	0.00	5.73
3525	17245	1.208535	ACTGTTCGGTGTTGTCTCCAA	59.791	47.619	0.00	0.00	0.00	3.53
3681	17484	5.935206	AGTAAACCCAAACCAAAACACTTTG	59.065	36.000	0.00	0.00	41.45	2.77
3706	17509	2.983907	CAGGTCATCTGCATCTGAGT	57.016	50.000	0.00	0.00	36.60	3.41
3881	17693	6.827727	AGCGTAAGTGGGATAGATTATTTGT	58.172	36.000	0.00	0.00	41.68	2.83
3910	17722	9.408648	TCAAAAGAGGGATAACATTATTTCTCC	57.591	33.333	9.57	0.00	0.00	3.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.