Multiple sequence alignment - TraesCS1B01G047700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G047700 chr1B 100.000 2716 0 0 476 3191 27678646 27675931 0.000000e+00 5016.0
1 TraesCS1B01G047700 chr1B 84.898 1278 168 17 1130 2389 27752820 27751550 0.000000e+00 1267.0
2 TraesCS1B01G047700 chr1B 100.000 303 0 0 1 303 27679121 27678819 7.730000e-156 560.0
3 TraesCS1B01G047700 chr1B 86.071 481 28 17 2425 2876 27751545 27751075 6.190000e-132 481.0
4 TraesCS1B01G047700 chr1B 98.039 51 1 0 3087 3137 27751074 27751024 4.380000e-14 89.8
5 TraesCS1B01G047700 chr6B 90.627 1867 133 24 953 2800 14330391 14332234 0.000000e+00 2440.0
6 TraesCS1B01G047700 chr6B 90.644 1678 145 9 1130 2800 14550079 14548407 0.000000e+00 2218.0
7 TraesCS1B01G047700 chr6B 88.102 1496 152 17 903 2389 14622832 14621354 0.000000e+00 1753.0
8 TraesCS1B01G047700 chr6B 75.948 1318 265 44 969 2256 39311043 39312338 5.810000e-177 630.0
9 TraesCS1B01G047700 chr6B 88.728 346 25 9 2465 2800 14621327 14620986 8.240000e-111 411.0
10 TraesCS1B01G047700 chr6B 98.095 105 2 0 3087 3191 14332363 14332467 1.960000e-42 183.0
11 TraesCS1B01G047700 chr6B 97.500 80 2 0 2797 2876 14332283 14332362 1.540000e-28 137.0
12 TraesCS1B01G047700 chr6B 92.208 77 6 0 2800 2876 14548355 14548279 3.370000e-20 110.0
13 TraesCS1B01G047700 chr6B 93.651 63 4 0 2802 2864 14620933 14620871 9.420000e-16 95.3
14 TraesCS1B01G047700 chr6B 92.157 51 3 1 3087 3136 16339940 16339990 1.590000e-08 71.3
15 TraesCS1B01G047700 chr6B 97.297 37 0 1 2394 2430 526479682 526479717 9.560000e-06 62.1
16 TraesCS1B01G047700 chr6D 86.713 1889 183 38 939 2800 7994340 7992493 0.000000e+00 2036.0
17 TraesCS1B01G047700 chr6D 86.291 1634 163 35 1185 2800 7715858 7717448 0.000000e+00 1720.0
18 TraesCS1B01G047700 chr6D 98.086 209 1 2 2878 3086 45510392 45510187 8.410000e-96 361.0
19 TraesCS1B01G047700 chr6D 81.081 185 28 3 2419 2598 9545378 9545196 1.190000e-29 141.0
20 TraesCS1B01G047700 chr6D 93.651 63 4 0 2802 2864 7992440 7992378 9.420000e-16 95.3
21 TraesCS1B01G047700 chr6A 85.839 1829 187 41 903 2706 7986675 7988456 0.000000e+00 1877.0
22 TraesCS1B01G047700 chr6A 84.722 1957 207 50 878 2800 8202456 8200558 0.000000e+00 1873.0
23 TraesCS1B01G047700 chr6A 98.013 302 5 1 476 776 404633345 404633044 1.010000e-144 523.0
24 TraesCS1B01G047700 chr6A 97.377 305 4 3 476 776 72967644 72967948 1.700000e-142 516.0
25 TraesCS1B01G047700 chr6A 100.000 61 0 0 243 303 201453658 201453598 2.600000e-21 113.0
26 TraesCS1B01G047700 chr6A 100.000 61 0 0 243 303 404633504 404633444 2.600000e-21 113.0
27 TraesCS1B01G047700 chr6A 100.000 61 0 0 243 303 580322222 580322162 2.600000e-21 113.0
28 TraesCS1B01G047700 chr6A 89.474 76 5 2 3087 3159 8200436 8200361 3.390000e-15 93.5
29 TraesCS1B01G047700 chr6A 86.842 76 5 4 2694 2766 10508515 10508442 2.640000e-11 80.5
30 TraesCS1B01G047700 chr6A 100.000 37 0 0 2801 2837 23890512 23890548 5.710000e-08 69.4
31 TraesCS1B01G047700 chr5A 86.063 1514 166 26 904 2389 650824447 650825943 0.000000e+00 1585.0
32 TraesCS1B01G047700 chr5A 97.674 301 7 0 476 776 123391742 123392042 4.720000e-143 518.0
33 TraesCS1B01G047700 chr5A 90.141 71 7 0 2797 2867 650826194 650826264 3.390000e-15 93.5
34 TraesCS1B01G047700 chr5A 100.000 32 0 0 2386 2417 666929957 666929988 3.440000e-05 60.2
35 TraesCS1B01G047700 chr5A 96.875 32 1 0 2394 2425 654098938 654098969 2.000000e-03 54.7
36 TraesCS1B01G047700 chr5D 85.631 1538 173 23 878 2386 524577396 524578914 0.000000e+00 1572.0
37 TraesCS1B01G047700 chr5D 100.000 209 0 0 2878 3086 512408364 512408156 1.390000e-103 387.0
38 TraesCS1B01G047700 chr5D 99.524 210 0 1 2878 3086 512415300 512415091 6.460000e-102 381.0
39 TraesCS1B01G047700 chr5D 98.104 211 1 2 2878 3086 503288485 503288694 6.510000e-97 364.0
40 TraesCS1B01G047700 chr5D 89.209 139 9 5 2417 2552 524578914 524579049 5.470000e-38 169.0
41 TraesCS1B01G047700 chr5D 91.549 71 6 0 2797 2867 524579168 524579238 7.280000e-17 99.0
42 TraesCS1B01G047700 chr5D 97.872 47 1 0 3087 3133 524579248 524579294 7.340000e-12 82.4
43 TraesCS1B01G047700 chr4A 97.712 306 2 2 476 776 403172059 403171754 3.650000e-144 521.0
44 TraesCS1B01G047700 chr4A 97.682 302 6 1 476 776 70593073 70593374 4.720000e-143 518.0
45 TraesCS1B01G047700 chr4A 100.000 61 0 0 243 303 304782563 304782503 2.600000e-21 113.0
46 TraesCS1B01G047700 chr4A 100.000 61 0 0 243 303 403172218 403172158 2.600000e-21 113.0
47 TraesCS1B01G047700 chr3A 97.712 306 2 2 476 776 219342634 219342939 3.650000e-144 521.0
48 TraesCS1B01G047700 chr3A 97.712 306 2 2 476 776 334784655 334784960 3.650000e-144 521.0
49 TraesCS1B01G047700 chr3A 100.000 61 0 0 243 303 219342475 219342535 2.600000e-21 113.0
50 TraesCS1B01G047700 chr2B 97.712 306 2 2 476 776 702728298 702727993 3.650000e-144 521.0
51 TraesCS1B01G047700 chr2B 98.565 209 1 1 2878 3086 474901512 474901718 5.030000e-98 368.0
52 TraesCS1B01G047700 chr4B 97.377 305 6 2 476 778 455976496 455976800 4.720000e-143 518.0
53 TraesCS1B01G047700 chr7D 99.522 209 0 1 2878 3086 77240005 77240212 2.320000e-101 379.0
54 TraesCS1B01G047700 chr2D 99.522 209 0 1 2878 3086 9786318 9786525 2.320000e-101 379.0
55 TraesCS1B01G047700 chr2D 94.737 38 2 0 2386 2423 605920895 605920858 3.440000e-05 60.2
56 TraesCS1B01G047700 chr2D 92.105 38 3 0 2386 2423 605934054 605934017 2.000000e-03 54.7
57 TraesCS1B01G047700 chr1A 98.565 209 1 2 2878 3086 554459643 554459849 5.030000e-98 368.0
58 TraesCS1B01G047700 chr1A 100.000 61 0 0 243 303 243143687 243143627 2.600000e-21 113.0
59 TraesCS1B01G047700 chr1A 100.000 61 0 0 243 303 472948406 472948466 2.600000e-21 113.0
60 TraesCS1B01G047700 chr1D 98.086 209 0 3 2878 3086 254418238 254418442 8.410000e-96 361.0
61 TraesCS1B01G047700 chr7A 97.015 67 2 0 237 303 31114300 31114366 2.600000e-21 113.0
62 TraesCS1B01G047700 chrUn 95.556 45 1 1 3093 3136 65789797 65789753 1.590000e-08 71.3
63 TraesCS1B01G047700 chrUn 89.091 55 3 3 3087 3140 95438808 95438860 7.390000e-07 65.8
64 TraesCS1B01G047700 chr2A 100.000 30 0 0 2388 2417 679014723 679014752 4.450000e-04 56.5
65 TraesCS1B01G047700 chr3D 100.000 29 0 0 2394 2422 487247257 487247229 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G047700 chr1B 27675931 27679121 3190 True 2788.00 5016 100.000000 1 3191 2 chr1B.!!$R1 3190
1 TraesCS1B01G047700 chr1B 27751024 27752820 1796 True 612.60 1267 89.669333 1130 3137 3 chr1B.!!$R2 2007
2 TraesCS1B01G047700 chr6B 14548279 14550079 1800 True 1164.00 2218 91.426000 1130 2876 2 chr6B.!!$R1 1746
3 TraesCS1B01G047700 chr6B 14330391 14332467 2076 False 920.00 2440 95.407333 953 3191 3 chr6B.!!$F4 2238
4 TraesCS1B01G047700 chr6B 14620871 14622832 1961 True 753.10 1753 90.160333 903 2864 3 chr6B.!!$R2 1961
5 TraesCS1B01G047700 chr6B 39311043 39312338 1295 False 630.00 630 75.948000 969 2256 1 chr6B.!!$F2 1287
6 TraesCS1B01G047700 chr6D 7715858 7717448 1590 False 1720.00 1720 86.291000 1185 2800 1 chr6D.!!$F1 1615
7 TraesCS1B01G047700 chr6D 7992378 7994340 1962 True 1065.65 2036 90.182000 939 2864 2 chr6D.!!$R3 1925
8 TraesCS1B01G047700 chr6A 7986675 7988456 1781 False 1877.00 1877 85.839000 903 2706 1 chr6A.!!$F1 1803
9 TraesCS1B01G047700 chr6A 8200361 8202456 2095 True 983.25 1873 87.098000 878 3159 2 chr6A.!!$R4 2281
10 TraesCS1B01G047700 chr5A 650824447 650826264 1817 False 839.25 1585 88.102000 904 2867 2 chr5A.!!$F4 1963
11 TraesCS1B01G047700 chr5D 524577396 524579294 1898 False 480.60 1572 91.065250 878 3133 4 chr5D.!!$F2 2255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.032678 AGAGGACACACACAAGAGCG 59.967 55.0 0.00 0.0 0.00 5.03 F
841 842 0.116342 TGGGGCCTGTGAGTAAGAGA 59.884 55.0 0.84 0.0 0.00 3.10 F
1348 1383 0.683179 GACAATACTGGCCCCCAACC 60.683 60.0 0.00 0.0 30.80 3.77 F
1809 1850 1.557269 GGTCAGATGCTGAGGTGGGT 61.557 60.0 0.00 0.0 41.46 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 1456 0.663568 CGATGGATCTACGGCGGAAC 60.664 60.000 13.24 0.0 0.00 3.62 R
2157 2198 0.688749 GGCCCATCCCTGCTTCATTT 60.689 55.000 0.00 0.0 0.00 2.32 R
2167 2209 0.760572 CAATTTCCATGGCCCATCCC 59.239 55.000 6.96 0.0 0.00 3.85 R
2966 3136 1.280710 TGGAAATGCCCGCTAAAGAGA 59.719 47.619 0.00 0.0 34.97 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.860918 CTAACGTATCTGTATCTATAGGCCA 57.139 40.000 5.01 0.00 0.00 5.36
25 26 6.761099 AACGTATCTGTATCTATAGGCCAG 57.239 41.667 5.01 4.21 0.00 4.85
26 27 6.063496 ACGTATCTGTATCTATAGGCCAGA 57.937 41.667 5.01 14.90 36.67 3.86
27 28 5.881443 ACGTATCTGTATCTATAGGCCAGAC 59.119 44.000 5.01 0.00 35.20 3.51
28 29 5.006844 CGTATCTGTATCTATAGGCCAGACG 59.993 48.000 5.01 12.63 35.20 4.18
29 30 4.635699 TCTGTATCTATAGGCCAGACGA 57.364 45.455 5.01 0.00 0.00 4.20
30 31 4.580868 TCTGTATCTATAGGCCAGACGAG 58.419 47.826 5.01 0.00 0.00 4.18
31 32 4.286291 TCTGTATCTATAGGCCAGACGAGA 59.714 45.833 5.01 0.00 0.00 4.04
32 33 4.580868 TGTATCTATAGGCCAGACGAGAG 58.419 47.826 5.01 0.00 0.00 3.20
33 34 2.570415 TCTATAGGCCAGACGAGAGG 57.430 55.000 5.01 0.00 0.00 3.69
34 35 2.055579 TCTATAGGCCAGACGAGAGGA 58.944 52.381 5.01 0.00 0.00 3.71
35 36 2.156098 CTATAGGCCAGACGAGAGGAC 58.844 57.143 5.01 0.00 0.00 3.85
36 37 0.259065 ATAGGCCAGACGAGAGGACA 59.741 55.000 5.01 0.00 34.45 4.02
37 38 0.680280 TAGGCCAGACGAGAGGACAC 60.680 60.000 5.01 0.00 34.45 3.67
38 39 2.276116 GGCCAGACGAGAGGACACA 61.276 63.158 0.00 0.00 31.39 3.72
39 40 1.080434 GCCAGACGAGAGGACACAC 60.080 63.158 0.00 0.00 0.00 3.82
40 41 1.806461 GCCAGACGAGAGGACACACA 61.806 60.000 0.00 0.00 0.00 3.72
41 42 0.039074 CCAGACGAGAGGACACACAC 60.039 60.000 0.00 0.00 0.00 3.82
42 43 0.668535 CAGACGAGAGGACACACACA 59.331 55.000 0.00 0.00 0.00 3.72
43 44 1.067060 CAGACGAGAGGACACACACAA 59.933 52.381 0.00 0.00 0.00 3.33
44 45 1.338337 AGACGAGAGGACACACACAAG 59.662 52.381 0.00 0.00 0.00 3.16
45 46 1.337071 GACGAGAGGACACACACAAGA 59.663 52.381 0.00 0.00 0.00 3.02
46 47 1.338337 ACGAGAGGACACACACAAGAG 59.662 52.381 0.00 0.00 0.00 2.85
47 48 1.789506 GAGAGGACACACACAAGAGC 58.210 55.000 0.00 0.00 0.00 4.09
48 49 0.032678 AGAGGACACACACAAGAGCG 59.967 55.000 0.00 0.00 0.00 5.03
49 50 0.946221 GAGGACACACACAAGAGCGG 60.946 60.000 0.00 0.00 0.00 5.52
50 51 1.069090 GGACACACACAAGAGCGGA 59.931 57.895 0.00 0.00 0.00 5.54
51 52 0.531974 GGACACACACAAGAGCGGAA 60.532 55.000 0.00 0.00 0.00 4.30
52 53 0.861837 GACACACACAAGAGCGGAAG 59.138 55.000 0.00 0.00 0.00 3.46
53 54 0.464036 ACACACACAAGAGCGGAAGA 59.536 50.000 0.00 0.00 0.00 2.87
54 55 1.070758 ACACACACAAGAGCGGAAGAT 59.929 47.619 0.00 0.00 0.00 2.40
55 56 1.462283 CACACACAAGAGCGGAAGATG 59.538 52.381 0.00 0.00 0.00 2.90
56 57 1.081892 CACACAAGAGCGGAAGATGG 58.918 55.000 0.00 0.00 0.00 3.51
57 58 0.976641 ACACAAGAGCGGAAGATGGA 59.023 50.000 0.00 0.00 0.00 3.41
58 59 1.347707 ACACAAGAGCGGAAGATGGAA 59.652 47.619 0.00 0.00 0.00 3.53
59 60 2.005451 CACAAGAGCGGAAGATGGAAG 58.995 52.381 0.00 0.00 0.00 3.46
60 61 1.902508 ACAAGAGCGGAAGATGGAAGA 59.097 47.619 0.00 0.00 0.00 2.87
61 62 2.093764 ACAAGAGCGGAAGATGGAAGAG 60.094 50.000 0.00 0.00 0.00 2.85
62 63 2.151502 AGAGCGGAAGATGGAAGAGA 57.848 50.000 0.00 0.00 0.00 3.10
63 64 2.461695 AGAGCGGAAGATGGAAGAGAA 58.538 47.619 0.00 0.00 0.00 2.87
64 65 2.430332 AGAGCGGAAGATGGAAGAGAAG 59.570 50.000 0.00 0.00 0.00 2.85
65 66 1.484240 AGCGGAAGATGGAAGAGAAGG 59.516 52.381 0.00 0.00 0.00 3.46
66 67 1.482593 GCGGAAGATGGAAGAGAAGGA 59.517 52.381 0.00 0.00 0.00 3.36
67 68 2.093447 GCGGAAGATGGAAGAGAAGGAA 60.093 50.000 0.00 0.00 0.00 3.36
68 69 3.619979 GCGGAAGATGGAAGAGAAGGAAA 60.620 47.826 0.00 0.00 0.00 3.13
69 70 3.935828 CGGAAGATGGAAGAGAAGGAAAC 59.064 47.826 0.00 0.00 0.00 2.78
70 71 4.265893 GGAAGATGGAAGAGAAGGAAACC 58.734 47.826 0.00 0.00 0.00 3.27
71 72 4.265893 GAAGATGGAAGAGAAGGAAACCC 58.734 47.826 0.00 0.00 0.00 4.11
72 73 2.578480 AGATGGAAGAGAAGGAAACCCC 59.422 50.000 0.00 0.00 0.00 4.95
73 74 1.827792 TGGAAGAGAAGGAAACCCCA 58.172 50.000 0.00 0.00 37.41 4.96
74 75 2.358258 TGGAAGAGAAGGAAACCCCAT 58.642 47.619 0.00 0.00 37.41 4.00
75 76 2.041620 TGGAAGAGAAGGAAACCCCATG 59.958 50.000 0.00 0.00 37.41 3.66
76 77 2.041755 GGAAGAGAAGGAAACCCCATGT 59.958 50.000 0.00 0.00 37.41 3.21
77 78 3.348119 GAAGAGAAGGAAACCCCATGTC 58.652 50.000 0.00 0.00 37.41 3.06
78 79 1.636003 AGAGAAGGAAACCCCATGTCC 59.364 52.381 0.00 0.00 37.41 4.02
79 80 0.704664 AGAAGGAAACCCCATGTCCC 59.295 55.000 0.00 0.00 37.41 4.46
80 81 0.407918 GAAGGAAACCCCATGTCCCA 59.592 55.000 0.00 0.00 37.41 4.37
81 82 1.007118 GAAGGAAACCCCATGTCCCAT 59.993 52.381 0.00 0.00 37.41 4.00
82 83 1.994399 AGGAAACCCCATGTCCCATA 58.006 50.000 0.00 0.00 37.41 2.74
83 84 2.513602 AGGAAACCCCATGTCCCATAT 58.486 47.619 0.00 0.00 37.41 1.78
84 85 2.177669 AGGAAACCCCATGTCCCATATG 59.822 50.000 0.00 0.00 37.41 1.78
85 86 2.176798 GGAAACCCCATGTCCCATATGA 59.823 50.000 3.65 0.00 34.14 2.15
86 87 3.490348 GAAACCCCATGTCCCATATGAG 58.510 50.000 3.65 0.00 0.00 2.90
87 88 0.773644 ACCCCATGTCCCATATGAGC 59.226 55.000 3.65 0.00 0.00 4.26
88 89 0.321919 CCCCATGTCCCATATGAGCG 60.322 60.000 3.65 0.00 0.00 5.03
89 90 0.321919 CCCATGTCCCATATGAGCGG 60.322 60.000 3.65 0.00 0.00 5.52
90 91 0.321919 CCATGTCCCATATGAGCGGG 60.322 60.000 3.65 0.00 44.60 6.13
91 92 0.957395 CATGTCCCATATGAGCGGGC 60.957 60.000 3.65 0.00 42.75 6.13
92 93 1.418097 ATGTCCCATATGAGCGGGCA 61.418 55.000 3.65 5.21 42.75 5.36
93 94 1.376466 GTCCCATATGAGCGGGCAT 59.624 57.895 3.65 0.00 42.75 4.40
94 95 0.613260 GTCCCATATGAGCGGGCATA 59.387 55.000 3.65 0.00 42.75 3.14
95 96 1.003118 GTCCCATATGAGCGGGCATAA 59.997 52.381 3.65 0.00 42.75 1.90
96 97 1.702401 TCCCATATGAGCGGGCATAAA 59.298 47.619 3.65 0.00 42.75 1.40
97 98 1.812571 CCCATATGAGCGGGCATAAAC 59.187 52.381 3.65 0.00 35.09 2.01
98 99 2.503331 CCATATGAGCGGGCATAAACA 58.497 47.619 3.65 0.00 34.67 2.83
99 100 2.884012 CCATATGAGCGGGCATAAACAA 59.116 45.455 3.65 0.00 34.67 2.83
100 101 3.058016 CCATATGAGCGGGCATAAACAAG 60.058 47.826 3.65 0.00 34.67 3.16
101 102 1.392589 ATGAGCGGGCATAAACAAGG 58.607 50.000 0.00 0.00 0.00 3.61
102 103 0.326595 TGAGCGGGCATAAACAAGGA 59.673 50.000 0.00 0.00 0.00 3.36
103 104 1.017387 GAGCGGGCATAAACAAGGAG 58.983 55.000 0.00 0.00 0.00 3.69
104 105 0.618458 AGCGGGCATAAACAAGGAGA 59.382 50.000 0.00 0.00 0.00 3.71
105 106 1.004277 AGCGGGCATAAACAAGGAGAA 59.996 47.619 0.00 0.00 0.00 2.87
106 107 1.132453 GCGGGCATAAACAAGGAGAAC 59.868 52.381 0.00 0.00 0.00 3.01
107 108 2.432444 CGGGCATAAACAAGGAGAACA 58.568 47.619 0.00 0.00 0.00 3.18
108 109 2.817258 CGGGCATAAACAAGGAGAACAA 59.183 45.455 0.00 0.00 0.00 2.83
109 110 3.254657 CGGGCATAAACAAGGAGAACAAA 59.745 43.478 0.00 0.00 0.00 2.83
110 111 4.261825 CGGGCATAAACAAGGAGAACAAAA 60.262 41.667 0.00 0.00 0.00 2.44
111 112 5.606505 GGGCATAAACAAGGAGAACAAAAA 58.393 37.500 0.00 0.00 0.00 1.94
144 145 7.757097 AGCATAACTAGTGTTCTTGTAATCG 57.243 36.000 0.00 0.00 37.59 3.34
145 146 6.255887 AGCATAACTAGTGTTCTTGTAATCGC 59.744 38.462 0.00 0.00 37.59 4.58
146 147 6.255887 GCATAACTAGTGTTCTTGTAATCGCT 59.744 38.462 0.00 0.00 37.59 4.93
147 148 7.515371 GCATAACTAGTGTTCTTGTAATCGCTC 60.515 40.741 0.00 0.00 37.59 5.03
148 149 4.745649 ACTAGTGTTCTTGTAATCGCTCC 58.254 43.478 0.00 0.00 0.00 4.70
149 150 2.973945 AGTGTTCTTGTAATCGCTCCC 58.026 47.619 0.00 0.00 0.00 4.30
150 151 2.301870 AGTGTTCTTGTAATCGCTCCCA 59.698 45.455 0.00 0.00 0.00 4.37
151 152 3.071479 GTGTTCTTGTAATCGCTCCCAA 58.929 45.455 0.00 0.00 0.00 4.12
152 153 3.500680 GTGTTCTTGTAATCGCTCCCAAA 59.499 43.478 0.00 0.00 0.00 3.28
153 154 4.023536 GTGTTCTTGTAATCGCTCCCAAAA 60.024 41.667 0.00 0.00 0.00 2.44
154 155 4.580995 TGTTCTTGTAATCGCTCCCAAAAA 59.419 37.500 0.00 0.00 0.00 1.94
155 156 5.242838 TGTTCTTGTAATCGCTCCCAAAAAT 59.757 36.000 0.00 0.00 0.00 1.82
156 157 5.975693 TCTTGTAATCGCTCCCAAAAATT 57.024 34.783 0.00 0.00 0.00 1.82
157 158 6.339587 TCTTGTAATCGCTCCCAAAAATTT 57.660 33.333 0.00 0.00 0.00 1.82
158 159 7.455641 TCTTGTAATCGCTCCCAAAAATTTA 57.544 32.000 0.00 0.00 0.00 1.40
159 160 7.309920 TCTTGTAATCGCTCCCAAAAATTTAC 58.690 34.615 0.00 0.00 0.00 2.01
160 161 6.827586 TGTAATCGCTCCCAAAAATTTACT 57.172 33.333 0.00 0.00 0.00 2.24
161 162 6.616947 TGTAATCGCTCCCAAAAATTTACTG 58.383 36.000 0.00 0.00 0.00 2.74
162 163 3.569250 TCGCTCCCAAAAATTTACTGC 57.431 42.857 0.00 0.00 0.00 4.40
163 164 2.230266 TCGCTCCCAAAAATTTACTGCC 59.770 45.455 0.00 0.00 0.00 4.85
164 165 2.673893 CGCTCCCAAAAATTTACTGCCC 60.674 50.000 0.00 0.00 0.00 5.36
165 166 2.567169 GCTCCCAAAAATTTACTGCCCT 59.433 45.455 0.00 0.00 0.00 5.19
166 167 3.007940 GCTCCCAAAAATTTACTGCCCTT 59.992 43.478 0.00 0.00 0.00 3.95
167 168 4.221924 GCTCCCAAAAATTTACTGCCCTTA 59.778 41.667 0.00 0.00 0.00 2.69
168 169 5.279758 GCTCCCAAAAATTTACTGCCCTTAA 60.280 40.000 0.00 0.00 0.00 1.85
169 170 6.104146 TCCCAAAAATTTACTGCCCTTAAC 57.896 37.500 0.00 0.00 0.00 2.01
170 171 5.841783 TCCCAAAAATTTACTGCCCTTAACT 59.158 36.000 0.00 0.00 0.00 2.24
171 172 7.011382 TCCCAAAAATTTACTGCCCTTAACTA 58.989 34.615 0.00 0.00 0.00 2.24
172 173 7.177744 TCCCAAAAATTTACTGCCCTTAACTAG 59.822 37.037 0.00 0.00 0.00 2.57
173 174 7.039293 CCCAAAAATTTACTGCCCTTAACTAGT 60.039 37.037 0.00 0.00 0.00 2.57
174 175 8.027189 CCAAAAATTTACTGCCCTTAACTAGTC 58.973 37.037 0.00 0.00 0.00 2.59
175 176 8.793592 CAAAAATTTACTGCCCTTAACTAGTCT 58.206 33.333 0.00 0.00 0.00 3.24
176 177 8.935614 AAAATTTACTGCCCTTAACTAGTCTT 57.064 30.769 0.00 0.00 0.00 3.01
177 178 8.935614 AAATTTACTGCCCTTAACTAGTCTTT 57.064 30.769 0.00 0.00 0.00 2.52
178 179 8.563123 AATTTACTGCCCTTAACTAGTCTTTC 57.437 34.615 0.00 0.00 0.00 2.62
179 180 6.930068 TTACTGCCCTTAACTAGTCTTTCT 57.070 37.500 0.00 0.00 0.00 2.52
180 181 5.827326 ACTGCCCTTAACTAGTCTTTCTT 57.173 39.130 0.00 0.00 0.00 2.52
181 182 6.189036 ACTGCCCTTAACTAGTCTTTCTTT 57.811 37.500 0.00 0.00 0.00 2.52
182 183 6.602278 ACTGCCCTTAACTAGTCTTTCTTTT 58.398 36.000 0.00 0.00 0.00 2.27
183 184 7.061054 ACTGCCCTTAACTAGTCTTTCTTTTT 58.939 34.615 0.00 0.00 0.00 1.94
239 240 5.379732 TTTTGACGAAAGAACACCTTTGT 57.620 34.783 0.00 0.00 44.63 2.83
240 241 6.497785 TTTTGACGAAAGAACACCTTTGTA 57.502 33.333 0.00 0.00 44.63 2.41
241 242 6.497785 TTTGACGAAAGAACACCTTTGTAA 57.502 33.333 0.00 0.00 44.63 2.41
242 243 5.473796 TGACGAAAGAACACCTTTGTAAC 57.526 39.130 0.00 0.00 44.63 2.50
243 244 4.936411 TGACGAAAGAACACCTTTGTAACA 59.064 37.500 0.00 0.00 44.63 2.41
244 245 5.064198 TGACGAAAGAACACCTTTGTAACAG 59.936 40.000 0.00 0.00 44.63 3.16
245 246 5.180271 ACGAAAGAACACCTTTGTAACAGA 58.820 37.500 0.00 0.00 44.63 3.41
246 247 5.064325 ACGAAAGAACACCTTTGTAACAGAC 59.936 40.000 0.00 0.00 44.63 3.51
247 248 5.503520 CGAAAGAACACCTTTGTAACAGACC 60.504 44.000 0.00 0.00 44.63 3.85
248 249 4.772886 AGAACACCTTTGTAACAGACCT 57.227 40.909 0.00 0.00 33.55 3.85
249 250 4.451900 AGAACACCTTTGTAACAGACCTG 58.548 43.478 0.00 0.00 33.55 4.00
250 251 3.208747 ACACCTTTGTAACAGACCTGG 57.791 47.619 1.82 0.00 32.60 4.45
251 252 1.880027 CACCTTTGTAACAGACCTGGC 59.120 52.381 0.00 0.00 34.19 4.85
252 253 1.202891 ACCTTTGTAACAGACCTGGCC 60.203 52.381 0.00 0.00 34.19 5.36
253 254 1.202879 CCTTTGTAACAGACCTGGCCA 60.203 52.381 4.71 4.71 34.19 5.36
254 255 2.582052 CTTTGTAACAGACCTGGCCAA 58.418 47.619 7.01 0.00 34.19 4.52
255 256 2.738587 TTGTAACAGACCTGGCCAAA 57.261 45.000 7.01 0.00 34.19 3.28
256 257 1.975660 TGTAACAGACCTGGCCAAAC 58.024 50.000 7.01 0.54 34.19 2.93
257 258 0.872388 GTAACAGACCTGGCCAAACG 59.128 55.000 7.01 0.00 34.19 3.60
258 259 0.250553 TAACAGACCTGGCCAAACGG 60.251 55.000 7.01 7.56 34.19 4.44
259 260 2.672996 CAGACCTGGCCAAACGGG 60.673 66.667 7.01 7.12 42.81 5.28
297 298 3.766691 ACGGCCCGTGCTAATCGT 61.767 61.111 8.62 0.00 39.18 3.73
298 299 3.261951 CGGCCCGTGCTAATCGTG 61.262 66.667 0.00 0.00 37.74 4.35
299 300 3.573491 GGCCCGTGCTAATCGTGC 61.573 66.667 0.00 0.00 37.74 5.34
300 301 3.573491 GCCCGTGCTAATCGTGCC 61.573 66.667 0.00 0.00 33.53 5.01
301 302 2.186903 CCCGTGCTAATCGTGCCT 59.813 61.111 0.00 0.00 0.00 4.75
302 303 2.173669 CCCGTGCTAATCGTGCCTG 61.174 63.158 0.00 0.00 0.00 4.85
499 500 2.900337 CCCGATGGCCCGTTTAGC 60.900 66.667 0.00 0.00 0.00 3.09
500 501 2.124901 CCGATGGCCCGTTTAGCA 60.125 61.111 0.00 0.00 0.00 3.49
501 502 2.469516 CCGATGGCCCGTTTAGCAC 61.470 63.158 0.00 0.00 0.00 4.40
509 510 2.742372 CGTTTAGCACGCTGGGCT 60.742 61.111 10.07 10.07 43.37 5.19
510 511 2.870372 GTTTAGCACGCTGGGCTG 59.130 61.111 14.30 0.00 42.62 4.85
511 512 3.055719 TTTAGCACGCTGGGCTGC 61.056 61.111 14.30 9.91 42.62 5.25
512 513 3.841137 TTTAGCACGCTGGGCTGCA 62.841 57.895 14.30 0.00 42.62 4.41
516 517 3.367743 CACGCTGGGCTGCACATT 61.368 61.111 4.43 0.00 0.00 2.71
517 518 2.598394 ACGCTGGGCTGCACATTT 60.598 55.556 4.43 0.00 0.00 2.32
518 519 2.202395 ACGCTGGGCTGCACATTTT 61.202 52.632 4.43 0.00 0.00 1.82
519 520 1.444895 CGCTGGGCTGCACATTTTC 60.445 57.895 4.43 0.00 0.00 2.29
520 521 1.667151 GCTGGGCTGCACATTTTCA 59.333 52.632 4.43 0.00 0.00 2.69
521 522 0.389426 GCTGGGCTGCACATTTTCAG 60.389 55.000 4.43 0.00 0.00 3.02
526 527 3.117589 CTGCACATTTTCAGCCTGC 57.882 52.632 0.00 0.00 0.00 4.85
527 528 0.601558 CTGCACATTTTCAGCCTGCT 59.398 50.000 0.00 0.00 0.00 4.24
528 529 0.315886 TGCACATTTTCAGCCTGCTG 59.684 50.000 12.91 12.91 44.86 4.41
529 530 0.389426 GCACATTTTCAGCCTGCTGG 60.389 55.000 18.38 5.03 43.75 4.85
530 531 0.245539 CACATTTTCAGCCTGCTGGG 59.754 55.000 18.38 1.66 43.75 4.45
539 540 3.875390 CCTGCTGGGCTGGTTTTT 58.125 55.556 0.71 0.00 41.68 1.94
540 541 3.050089 CCTGCTGGGCTGGTTTTTA 57.950 52.632 0.71 0.00 41.68 1.52
541 542 0.890683 CCTGCTGGGCTGGTTTTTAG 59.109 55.000 0.71 0.00 41.68 1.85
542 543 0.890683 CTGCTGGGCTGGTTTTTAGG 59.109 55.000 0.00 0.00 0.00 2.69
543 544 1.184970 TGCTGGGCTGGTTTTTAGGC 61.185 55.000 0.00 0.00 39.76 3.93
549 550 3.801114 GGCTGGTTTTTAGGCCTATTG 57.199 47.619 14.74 0.49 41.20 1.90
550 551 2.430694 GGCTGGTTTTTAGGCCTATTGG 59.569 50.000 14.74 1.56 41.20 3.16
551 552 2.430694 GCTGGTTTTTAGGCCTATTGGG 59.569 50.000 14.74 2.10 38.36 4.12
614 615 2.465860 AAAAATTAAACGGGCCCTGC 57.534 45.000 22.43 0.00 0.00 4.85
698 699 3.527427 GGCCCGTTTAGCCCATGC 61.527 66.667 0.00 0.00 45.16 4.06
699 700 3.527427 GCCCGTTTAGCCCATGCC 61.527 66.667 0.00 0.00 38.69 4.40
700 701 3.209097 CCCGTTTAGCCCATGCCG 61.209 66.667 0.00 0.00 38.69 5.69
701 702 2.437716 CCGTTTAGCCCATGCCGT 60.438 61.111 0.00 0.00 38.69 5.68
702 703 2.760159 CCGTTTAGCCCATGCCGTG 61.760 63.158 0.00 0.00 38.69 4.94
703 704 2.489751 GTTTAGCCCATGCCGTGC 59.510 61.111 0.00 0.00 38.69 5.34
704 705 2.753849 TTTAGCCCATGCCGTGCC 60.754 61.111 0.00 0.00 38.69 5.01
705 706 3.280938 TTTAGCCCATGCCGTGCCT 62.281 57.895 0.00 0.00 38.69 4.75
706 707 3.993614 TTAGCCCATGCCGTGCCTG 62.994 63.158 0.00 0.00 38.69 4.85
762 763 4.404098 CTGTTTAGCCCGGCCCGT 62.404 66.667 5.55 0.00 0.00 5.28
763 764 3.912745 CTGTTTAGCCCGGCCCGTT 62.913 63.158 5.55 0.00 0.00 4.44
764 765 2.674033 GTTTAGCCCGGCCCGTTT 60.674 61.111 5.55 0.00 0.00 3.60
765 766 2.673687 TTTAGCCCGGCCCGTTTG 60.674 61.111 5.55 0.00 0.00 2.93
766 767 4.726304 TTAGCCCGGCCCGTTTGG 62.726 66.667 5.55 0.00 37.09 3.28
776 777 2.702847 CCCGTTTGGCCAGCTATAC 58.297 57.895 5.11 0.00 0.00 1.47
777 778 0.180406 CCCGTTTGGCCAGCTATACT 59.820 55.000 5.11 0.00 0.00 2.12
778 779 1.408266 CCCGTTTGGCCAGCTATACTT 60.408 52.381 5.11 0.00 0.00 2.24
779 780 2.365582 CCGTTTGGCCAGCTATACTTT 58.634 47.619 5.11 0.00 0.00 2.66
780 781 2.097466 CCGTTTGGCCAGCTATACTTTG 59.903 50.000 5.11 0.00 0.00 2.77
781 782 2.747446 CGTTTGGCCAGCTATACTTTGT 59.253 45.455 5.11 0.00 0.00 2.83
782 783 3.936453 CGTTTGGCCAGCTATACTTTGTA 59.064 43.478 5.11 0.00 0.00 2.41
783 784 4.393680 CGTTTGGCCAGCTATACTTTGTAA 59.606 41.667 5.11 0.00 0.00 2.41
784 785 5.106475 CGTTTGGCCAGCTATACTTTGTAAA 60.106 40.000 5.11 0.00 0.00 2.01
785 786 5.890424 TTGGCCAGCTATACTTTGTAAAC 57.110 39.130 5.11 0.00 0.00 2.01
786 787 3.936453 TGGCCAGCTATACTTTGTAAACG 59.064 43.478 0.00 0.00 0.00 3.60
787 788 3.311596 GGCCAGCTATACTTTGTAAACGG 59.688 47.826 0.00 0.00 0.00 4.44
788 789 3.311596 GCCAGCTATACTTTGTAAACGGG 59.688 47.826 0.00 0.00 0.00 5.28
789 790 4.510571 CCAGCTATACTTTGTAAACGGGT 58.489 43.478 0.00 0.00 0.00 5.28
790 791 4.569564 CCAGCTATACTTTGTAAACGGGTC 59.430 45.833 0.00 0.00 0.00 4.46
791 792 5.172934 CAGCTATACTTTGTAAACGGGTCA 58.827 41.667 0.00 0.00 0.00 4.02
792 793 5.291128 CAGCTATACTTTGTAAACGGGTCAG 59.709 44.000 0.00 0.00 0.00 3.51
793 794 4.569564 GCTATACTTTGTAAACGGGTCAGG 59.430 45.833 0.00 0.00 0.00 3.86
794 795 4.628963 ATACTTTGTAAACGGGTCAGGT 57.371 40.909 0.00 0.00 0.00 4.00
795 796 2.842457 ACTTTGTAAACGGGTCAGGTC 58.158 47.619 0.00 0.00 0.00 3.85
796 797 2.171027 ACTTTGTAAACGGGTCAGGTCA 59.829 45.455 0.00 0.00 0.00 4.02
797 798 2.536761 TTGTAAACGGGTCAGGTCAG 57.463 50.000 0.00 0.00 0.00 3.51
798 799 0.682852 TGTAAACGGGTCAGGTCAGG 59.317 55.000 0.00 0.00 0.00 3.86
799 800 0.683412 GTAAACGGGTCAGGTCAGGT 59.317 55.000 0.00 0.00 0.00 4.00
800 801 1.895131 GTAAACGGGTCAGGTCAGGTA 59.105 52.381 0.00 0.00 0.00 3.08
801 802 0.974383 AAACGGGTCAGGTCAGGTAG 59.026 55.000 0.00 0.00 0.00 3.18
802 803 1.542187 AACGGGTCAGGTCAGGTAGC 61.542 60.000 0.00 0.00 0.00 3.58
803 804 1.982395 CGGGTCAGGTCAGGTAGCA 60.982 63.158 0.00 0.00 0.00 3.49
804 805 1.330655 CGGGTCAGGTCAGGTAGCAT 61.331 60.000 0.00 0.00 0.00 3.79
805 806 0.179000 GGGTCAGGTCAGGTAGCATG 59.821 60.000 0.00 0.00 0.00 4.06
806 807 1.195115 GGTCAGGTCAGGTAGCATGA 58.805 55.000 0.00 0.00 0.00 3.07
807 808 1.137872 GGTCAGGTCAGGTAGCATGAG 59.862 57.143 0.00 0.00 0.00 2.90
808 809 1.137872 GTCAGGTCAGGTAGCATGAGG 59.862 57.143 0.00 0.00 0.00 3.86
809 810 1.198713 CAGGTCAGGTAGCATGAGGT 58.801 55.000 0.00 0.00 0.00 3.85
810 811 1.134580 CAGGTCAGGTAGCATGAGGTG 60.135 57.143 0.00 0.00 0.00 4.00
811 812 1.195115 GGTCAGGTAGCATGAGGTGA 58.805 55.000 0.00 0.00 0.00 4.02
812 813 1.134670 GGTCAGGTAGCATGAGGTGAC 60.135 57.143 0.00 1.30 34.77 3.67
813 814 1.550524 GTCAGGTAGCATGAGGTGACA 59.449 52.381 0.00 0.00 35.45 3.58
814 815 1.550524 TCAGGTAGCATGAGGTGACAC 59.449 52.381 0.00 0.00 0.00 3.67
815 816 0.905357 AGGTAGCATGAGGTGACACC 59.095 55.000 17.43 17.43 38.99 4.16
816 817 0.460284 GGTAGCATGAGGTGACACCG 60.460 60.000 18.93 5.94 44.90 4.94
817 818 0.530744 GTAGCATGAGGTGACACCGA 59.469 55.000 18.93 10.24 44.90 4.69
818 819 0.530744 TAGCATGAGGTGACACCGAC 59.469 55.000 18.93 16.58 44.90 4.79
819 820 2.094659 GCATGAGGTGACACCGACG 61.095 63.158 18.93 10.03 44.90 5.12
820 821 2.094659 CATGAGGTGACACCGACGC 61.095 63.158 18.93 10.34 44.90 5.19
821 822 3.626680 ATGAGGTGACACCGACGCG 62.627 63.158 18.93 3.53 44.90 6.01
822 823 4.338539 GAGGTGACACCGACGCGT 62.339 66.667 13.85 13.85 44.90 6.01
823 824 4.640855 AGGTGACACCGACGCGTG 62.641 66.667 20.70 5.54 44.90 5.34
836 837 3.702048 GCGTGGGGCCTGTGAGTA 61.702 66.667 0.84 0.00 34.80 2.59
837 838 3.065306 CGTGGGGCCTGTGAGTAA 58.935 61.111 0.84 0.00 0.00 2.24
838 839 1.079127 CGTGGGGCCTGTGAGTAAG 60.079 63.158 0.84 0.00 0.00 2.34
839 840 1.541310 CGTGGGGCCTGTGAGTAAGA 61.541 60.000 0.84 0.00 0.00 2.10
840 841 0.250513 GTGGGGCCTGTGAGTAAGAG 59.749 60.000 0.84 0.00 0.00 2.85
841 842 0.116342 TGGGGCCTGTGAGTAAGAGA 59.884 55.000 0.84 0.00 0.00 3.10
842 843 0.827368 GGGGCCTGTGAGTAAGAGAG 59.173 60.000 0.84 0.00 0.00 3.20
843 844 1.619977 GGGGCCTGTGAGTAAGAGAGA 60.620 57.143 0.84 0.00 0.00 3.10
844 845 2.393646 GGGCCTGTGAGTAAGAGAGAT 58.606 52.381 0.84 0.00 0.00 2.75
845 846 3.567397 GGGCCTGTGAGTAAGAGAGATA 58.433 50.000 0.84 0.00 0.00 1.98
846 847 4.156477 GGGCCTGTGAGTAAGAGAGATAT 58.844 47.826 0.84 0.00 0.00 1.63
847 848 5.326069 GGGCCTGTGAGTAAGAGAGATATA 58.674 45.833 0.84 0.00 0.00 0.86
848 849 5.955355 GGGCCTGTGAGTAAGAGAGATATAT 59.045 44.000 0.84 0.00 0.00 0.86
849 850 7.120051 GGGCCTGTGAGTAAGAGAGATATATA 58.880 42.308 0.84 0.00 0.00 0.86
850 851 7.067737 GGGCCTGTGAGTAAGAGAGATATATAC 59.932 44.444 0.84 0.00 0.00 1.47
851 852 7.612244 GGCCTGTGAGTAAGAGAGATATATACA 59.388 40.741 0.00 0.00 0.00 2.29
852 853 8.673711 GCCTGTGAGTAAGAGAGATATATACAG 58.326 40.741 0.00 0.00 0.00 2.74
853 854 9.952030 CCTGTGAGTAAGAGAGATATATACAGA 57.048 37.037 0.00 0.00 34.23 3.41
855 856 9.952030 TGTGAGTAAGAGAGATATATACAGAGG 57.048 37.037 0.00 0.00 0.00 3.69
858 859 9.326413 GAGTAAGAGAGATATATACAGAGGAGC 57.674 40.741 0.00 0.00 0.00 4.70
859 860 7.985184 AGTAAGAGAGATATATACAGAGGAGCG 59.015 40.741 0.00 0.00 0.00 5.03
860 861 5.123227 AGAGAGATATATACAGAGGAGCGC 58.877 45.833 0.00 0.00 0.00 5.92
861 862 5.104527 AGAGAGATATATACAGAGGAGCGCT 60.105 44.000 11.27 11.27 0.00 5.92
862 863 6.099125 AGAGAGATATATACAGAGGAGCGCTA 59.901 42.308 11.50 0.00 0.00 4.26
863 864 6.654959 AGAGATATATACAGAGGAGCGCTAA 58.345 40.000 11.50 0.00 0.00 3.09
864 865 6.765989 AGAGATATATACAGAGGAGCGCTAAG 59.234 42.308 11.50 0.58 0.00 2.18
865 866 6.654959 AGATATATACAGAGGAGCGCTAAGA 58.345 40.000 11.50 0.00 0.00 2.10
866 867 6.765989 AGATATATACAGAGGAGCGCTAAGAG 59.234 42.308 11.50 1.84 0.00 2.85
867 868 2.711978 TACAGAGGAGCGCTAAGAGA 57.288 50.000 11.50 0.00 0.00 3.10
868 869 1.099689 ACAGAGGAGCGCTAAGAGAC 58.900 55.000 11.50 0.00 0.00 3.36
869 870 1.340600 ACAGAGGAGCGCTAAGAGACT 60.341 52.381 11.50 1.42 0.00 3.24
870 871 1.065401 CAGAGGAGCGCTAAGAGACTG 59.935 57.143 11.50 10.72 0.00 3.51
871 872 1.099689 GAGGAGCGCTAAGAGACTGT 58.900 55.000 11.50 0.00 0.00 3.55
872 873 1.064952 GAGGAGCGCTAAGAGACTGTC 59.935 57.143 11.50 0.00 0.00 3.51
873 874 0.811915 GGAGCGCTAAGAGACTGTCA 59.188 55.000 11.50 0.00 0.00 3.58
874 875 1.202582 GGAGCGCTAAGAGACTGTCAA 59.797 52.381 11.50 0.00 0.00 3.18
875 876 2.255316 GAGCGCTAAGAGACTGTCAAC 58.745 52.381 11.50 3.87 0.00 3.18
876 877 1.613925 AGCGCTAAGAGACTGTCAACA 59.386 47.619 8.99 0.00 0.00 3.33
889 890 2.034687 CAACAGGGCCCACTCCAG 59.965 66.667 27.56 8.70 0.00 3.86
898 899 2.732289 CCCACTCCAGTTTGGGTTG 58.268 57.895 0.00 0.00 46.74 3.77
900 901 1.410932 CCCACTCCAGTTTGGGTTGAA 60.411 52.381 0.00 0.00 46.74 2.69
901 902 2.383855 CCACTCCAGTTTGGGTTGAAA 58.616 47.619 0.00 0.00 38.32 2.69
1047 1070 2.123077 CTCCTCTCGGCCCCATCT 60.123 66.667 0.00 0.00 0.00 2.90
1083 1115 2.352032 GCTCCTCGGCTACCACAGT 61.352 63.158 0.00 0.00 0.00 3.55
1348 1383 0.683179 GACAATACTGGCCCCCAACC 60.683 60.000 0.00 0.00 30.80 3.77
1492 1530 2.423088 GGGTCCTACGAGAATCTCCTCA 60.423 54.545 4.47 0.00 32.86 3.86
1557 1598 1.826487 GGTGGTCAAGCCCAACGTT 60.826 57.895 0.00 0.00 35.92 3.99
1674 1715 2.019951 GACGGTGTTGCGTGTCGAT 61.020 57.895 0.00 0.00 0.00 3.59
1676 1717 2.307309 CGGTGTTGCGTGTCGATGT 61.307 57.895 0.00 0.00 0.00 3.06
1708 1749 2.128771 CCGATGGTCTGGGATGTTTT 57.871 50.000 0.00 0.00 0.00 2.43
1759 1800 1.756375 CGAGGAGAAAATCGCTGCCG 61.756 60.000 0.00 0.00 31.42 5.69
1760 1801 2.041366 GAGGAGAAAATCGCTGCCGC 62.041 60.000 0.00 0.00 0.00 6.53
1781 1822 3.005155 GCAGTGGAGCACTTGAAGAAAAT 59.995 43.478 0.00 0.00 42.59 1.82
1809 1850 1.557269 GGTCAGATGCTGAGGTGGGT 61.557 60.000 0.00 0.00 41.46 4.51
1881 1922 3.093057 GCAGAGAAGGTCAGAGTTCCTA 58.907 50.000 0.00 0.00 33.27 2.94
2157 2198 6.223852 GGAATTGACGGCTAGATTCAGATTA 58.776 40.000 12.43 0.00 31.72 1.75
2167 2209 7.570875 CGGCTAGATTCAGATTAAATGAAGCAG 60.571 40.741 18.54 14.97 43.70 4.24
2176 2218 0.688749 AAATGAAGCAGGGATGGGCC 60.689 55.000 0.00 0.00 0.00 5.80
2412 2504 9.289782 GTACTCCCTCTTATATTAGTTTACGGA 57.710 37.037 0.00 0.00 0.00 4.69
2547 2645 6.340522 CAATTTTCTTGTGAAACCAGAACCT 58.659 36.000 0.00 0.00 46.69 3.50
2590 2688 5.240623 AGAACTGTATTGCATCGTTTTCCAA 59.759 36.000 0.00 0.00 0.00 3.53
2740 2857 5.575157 TGGGTGTCTTATGCCTTTTGATTA 58.425 37.500 0.00 0.00 0.00 1.75
2867 3037 3.922375 AGCTTATCAGAACTAGAGGGCT 58.078 45.455 0.00 0.00 0.00 5.19
2876 3046 0.252467 ACTAGAGGGCTTGCTCAGGT 60.252 55.000 0.00 0.00 0.00 4.00
2877 3047 0.908198 CTAGAGGGCTTGCTCAGGTT 59.092 55.000 0.00 0.00 0.00 3.50
2878 3048 1.280421 CTAGAGGGCTTGCTCAGGTTT 59.720 52.381 0.00 0.00 0.00 3.27
2879 3049 0.480252 AGAGGGCTTGCTCAGGTTTT 59.520 50.000 0.00 0.00 0.00 2.43
2880 3050 1.133356 AGAGGGCTTGCTCAGGTTTTT 60.133 47.619 0.00 0.00 0.00 1.94
2944 3114 9.581099 TTTTCTTTCTAAAAATCGATATTGGCC 57.419 29.630 0.00 0.00 0.00 5.36
2945 3115 6.954944 TCTTTCTAAAAATCGATATTGGCCG 58.045 36.000 0.00 0.00 0.00 6.13
2946 3116 6.764085 TCTTTCTAAAAATCGATATTGGCCGA 59.236 34.615 0.00 0.00 39.25 5.54
2947 3117 6.539649 TTCTAAAAATCGATATTGGCCGAG 57.460 37.500 0.00 0.00 38.25 4.63
2948 3118 5.849510 TCTAAAAATCGATATTGGCCGAGA 58.150 37.500 0.00 0.00 38.25 4.04
2949 3119 5.926542 TCTAAAAATCGATATTGGCCGAGAG 59.073 40.000 0.00 0.00 38.25 3.20
2950 3120 4.336889 AAAATCGATATTGGCCGAGAGA 57.663 40.909 0.00 0.00 38.25 3.10
2951 3121 3.305398 AATCGATATTGGCCGAGAGAC 57.695 47.619 0.00 0.00 38.25 3.36
2952 3122 1.687563 TCGATATTGGCCGAGAGACA 58.312 50.000 0.00 0.00 0.00 3.41
2953 3123 2.028876 TCGATATTGGCCGAGAGACAA 58.971 47.619 0.00 0.00 33.60 3.18
2954 3124 2.628178 TCGATATTGGCCGAGAGACAAT 59.372 45.455 0.00 0.00 40.10 2.71
2955 3125 2.989840 CGATATTGGCCGAGAGACAATC 59.010 50.000 0.00 0.00 38.66 2.67
2956 3126 3.552890 CGATATTGGCCGAGAGACAATCA 60.553 47.826 0.00 0.00 38.66 2.57
2957 3127 2.787473 ATTGGCCGAGAGACAATCAA 57.213 45.000 0.00 0.00 34.84 2.57
2958 3128 2.559698 TTGGCCGAGAGACAATCAAA 57.440 45.000 0.00 0.00 0.00 2.69
2959 3129 2.787473 TGGCCGAGAGACAATCAAAT 57.213 45.000 0.00 0.00 0.00 2.32
2960 3130 3.904800 TGGCCGAGAGACAATCAAATA 57.095 42.857 0.00 0.00 0.00 1.40
2961 3131 3.797039 TGGCCGAGAGACAATCAAATAG 58.203 45.455 0.00 0.00 0.00 1.73
2962 3132 3.450817 TGGCCGAGAGACAATCAAATAGA 59.549 43.478 0.00 0.00 0.00 1.98
2963 3133 4.101585 TGGCCGAGAGACAATCAAATAGAT 59.898 41.667 0.00 0.00 39.09 1.98
2965 3135 5.529060 GGCCGAGAGACAATCAAATAGATTT 59.471 40.000 0.00 0.00 44.48 2.17
2966 3136 6.038714 GGCCGAGAGACAATCAAATAGATTTT 59.961 38.462 0.00 0.00 44.48 1.82
2967 3137 7.128976 GCCGAGAGACAATCAAATAGATTTTC 58.871 38.462 0.00 0.00 44.48 2.29
2976 3146 9.994432 ACAATCAAATAGATTTTCTCTTTAGCG 57.006 29.630 0.00 0.00 44.48 4.26
2977 3147 9.443283 CAATCAAATAGATTTTCTCTTTAGCGG 57.557 33.333 0.00 0.00 44.48 5.52
2978 3148 7.553881 TCAAATAGATTTTCTCTTTAGCGGG 57.446 36.000 0.00 0.00 35.28 6.13
2979 3149 6.038271 TCAAATAGATTTTCTCTTTAGCGGGC 59.962 38.462 0.00 0.00 35.28 6.13
2980 3150 3.350219 AGATTTTCTCTTTAGCGGGCA 57.650 42.857 0.00 0.00 0.00 5.36
2981 3151 3.891049 AGATTTTCTCTTTAGCGGGCAT 58.109 40.909 0.00 0.00 0.00 4.40
2982 3152 4.273318 AGATTTTCTCTTTAGCGGGCATT 58.727 39.130 0.00 0.00 0.00 3.56
2983 3153 4.706962 AGATTTTCTCTTTAGCGGGCATTT 59.293 37.500 0.00 0.00 0.00 2.32
2984 3154 4.434713 TTTTCTCTTTAGCGGGCATTTC 57.565 40.909 0.00 0.00 0.00 2.17
2985 3155 2.038387 TCTCTTTAGCGGGCATTTCC 57.962 50.000 0.00 0.00 0.00 3.13
2986 3156 1.280710 TCTCTTTAGCGGGCATTTCCA 59.719 47.619 0.00 0.00 36.21 3.53
2987 3157 2.092429 TCTCTTTAGCGGGCATTTCCAT 60.092 45.455 0.00 0.00 36.21 3.41
2988 3158 3.135712 TCTCTTTAGCGGGCATTTCCATA 59.864 43.478 0.00 0.00 36.21 2.74
2989 3159 4.074970 CTCTTTAGCGGGCATTTCCATAT 58.925 43.478 0.00 0.00 36.21 1.78
2990 3160 5.012664 TCTCTTTAGCGGGCATTTCCATATA 59.987 40.000 0.00 0.00 36.21 0.86
2991 3161 5.245531 TCTTTAGCGGGCATTTCCATATAG 58.754 41.667 0.00 0.00 36.21 1.31
2992 3162 2.496899 AGCGGGCATTTCCATATAGG 57.503 50.000 0.00 0.00 36.21 2.57
3079 3249 8.607441 ATTTATCAAGAAAGCAAAAAGGGTTC 57.393 30.769 0.00 0.00 0.00 3.62
3080 3250 5.876651 ATCAAGAAAGCAAAAAGGGTTCT 57.123 34.783 0.00 0.00 0.00 3.01
3081 3251 5.675684 TCAAGAAAGCAAAAAGGGTTCTT 57.324 34.783 0.00 0.00 34.07 2.52
3082 3252 6.783708 TCAAGAAAGCAAAAAGGGTTCTTA 57.216 33.333 0.00 0.00 32.01 2.10
3083 3253 7.360113 TCAAGAAAGCAAAAAGGGTTCTTAT 57.640 32.000 0.00 0.00 32.01 1.73
3084 3254 7.433680 TCAAGAAAGCAAAAAGGGTTCTTATC 58.566 34.615 0.00 0.00 32.01 1.75
3085 3255 6.976934 AGAAAGCAAAAAGGGTTCTTATCA 57.023 33.333 0.00 0.00 32.01 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.769507 TCTGGCCTATAGATACAGATACGTTAG 59.230 40.741 3.32 0.00 33.62 2.34
2 3 6.374894 GTCTGGCCTATAGATACAGATACGTT 59.625 42.308 17.86 0.00 39.97 3.99
3 4 5.881443 GTCTGGCCTATAGATACAGATACGT 59.119 44.000 17.86 0.00 39.97 3.57
4 5 5.006844 CGTCTGGCCTATAGATACAGATACG 59.993 48.000 17.86 15.24 39.97 3.06
5 6 6.114089 TCGTCTGGCCTATAGATACAGATAC 58.886 44.000 17.86 10.03 39.97 2.24
6 7 6.156429 TCTCGTCTGGCCTATAGATACAGATA 59.844 42.308 17.86 11.66 39.97 1.98
7 8 5.045505 TCTCGTCTGGCCTATAGATACAGAT 60.046 44.000 17.86 0.00 39.97 2.90
8 9 4.286291 TCTCGTCTGGCCTATAGATACAGA 59.714 45.833 3.32 13.51 35.97 3.41
9 10 4.580868 TCTCGTCTGGCCTATAGATACAG 58.419 47.826 3.32 6.63 0.00 2.74
10 11 4.565861 CCTCTCGTCTGGCCTATAGATACA 60.566 50.000 3.32 0.00 0.00 2.29
11 12 3.942748 CCTCTCGTCTGGCCTATAGATAC 59.057 52.174 3.32 0.00 0.00 2.24
12 13 3.844804 TCCTCTCGTCTGGCCTATAGATA 59.155 47.826 3.32 0.00 0.00 1.98
13 14 2.645297 TCCTCTCGTCTGGCCTATAGAT 59.355 50.000 3.32 0.00 0.00 1.98
14 15 2.055579 TCCTCTCGTCTGGCCTATAGA 58.944 52.381 3.32 0.00 0.00 1.98
15 16 2.156098 GTCCTCTCGTCTGGCCTATAG 58.844 57.143 3.32 0.00 0.00 1.31
16 17 1.493446 TGTCCTCTCGTCTGGCCTATA 59.507 52.381 3.32 0.00 0.00 1.31
17 18 0.259065 TGTCCTCTCGTCTGGCCTAT 59.741 55.000 3.32 0.00 0.00 2.57
18 19 0.680280 GTGTCCTCTCGTCTGGCCTA 60.680 60.000 3.32 0.00 0.00 3.93
19 20 1.979693 GTGTCCTCTCGTCTGGCCT 60.980 63.158 3.32 0.00 0.00 5.19
20 21 2.276116 TGTGTCCTCTCGTCTGGCC 61.276 63.158 0.00 0.00 0.00 5.36
21 22 1.080434 GTGTGTCCTCTCGTCTGGC 60.080 63.158 0.00 0.00 0.00 4.85
22 23 0.039074 GTGTGTGTCCTCTCGTCTGG 60.039 60.000 0.00 0.00 0.00 3.86
23 24 0.668535 TGTGTGTGTCCTCTCGTCTG 59.331 55.000 0.00 0.00 0.00 3.51
24 25 1.338337 CTTGTGTGTGTCCTCTCGTCT 59.662 52.381 0.00 0.00 0.00 4.18
25 26 1.337071 TCTTGTGTGTGTCCTCTCGTC 59.663 52.381 0.00 0.00 0.00 4.20
26 27 1.338337 CTCTTGTGTGTGTCCTCTCGT 59.662 52.381 0.00 0.00 0.00 4.18
27 28 1.932604 GCTCTTGTGTGTGTCCTCTCG 60.933 57.143 0.00 0.00 0.00 4.04
28 29 1.789506 GCTCTTGTGTGTGTCCTCTC 58.210 55.000 0.00 0.00 0.00 3.20
29 30 0.032678 CGCTCTTGTGTGTGTCCTCT 59.967 55.000 0.00 0.00 0.00 3.69
30 31 0.946221 CCGCTCTTGTGTGTGTCCTC 60.946 60.000 0.00 0.00 0.00 3.71
31 32 1.069765 CCGCTCTTGTGTGTGTCCT 59.930 57.895 0.00 0.00 0.00 3.85
32 33 0.531974 TTCCGCTCTTGTGTGTGTCC 60.532 55.000 0.00 0.00 0.00 4.02
33 34 0.861837 CTTCCGCTCTTGTGTGTGTC 59.138 55.000 0.00 0.00 0.00 3.67
34 35 0.464036 TCTTCCGCTCTTGTGTGTGT 59.536 50.000 0.00 0.00 0.00 3.72
35 36 1.462283 CATCTTCCGCTCTTGTGTGTG 59.538 52.381 0.00 0.00 0.00 3.82
36 37 1.609061 CCATCTTCCGCTCTTGTGTGT 60.609 52.381 0.00 0.00 0.00 3.72
37 38 1.081892 CCATCTTCCGCTCTTGTGTG 58.918 55.000 0.00 0.00 0.00 3.82
38 39 0.976641 TCCATCTTCCGCTCTTGTGT 59.023 50.000 0.00 0.00 0.00 3.72
39 40 2.005451 CTTCCATCTTCCGCTCTTGTG 58.995 52.381 0.00 0.00 0.00 3.33
40 41 1.902508 TCTTCCATCTTCCGCTCTTGT 59.097 47.619 0.00 0.00 0.00 3.16
41 42 2.167281 TCTCTTCCATCTTCCGCTCTTG 59.833 50.000 0.00 0.00 0.00 3.02
42 43 2.461695 TCTCTTCCATCTTCCGCTCTT 58.538 47.619 0.00 0.00 0.00 2.85
43 44 2.151502 TCTCTTCCATCTTCCGCTCT 57.848 50.000 0.00 0.00 0.00 4.09
44 45 2.482839 CCTTCTCTTCCATCTTCCGCTC 60.483 54.545 0.00 0.00 0.00 5.03
45 46 1.484240 CCTTCTCTTCCATCTTCCGCT 59.516 52.381 0.00 0.00 0.00 5.52
46 47 1.482593 TCCTTCTCTTCCATCTTCCGC 59.517 52.381 0.00 0.00 0.00 5.54
47 48 3.895232 TTCCTTCTCTTCCATCTTCCG 57.105 47.619 0.00 0.00 0.00 4.30
48 49 4.265893 GGTTTCCTTCTCTTCCATCTTCC 58.734 47.826 0.00 0.00 0.00 3.46
49 50 4.265893 GGGTTTCCTTCTCTTCCATCTTC 58.734 47.826 0.00 0.00 0.00 2.87
50 51 3.010696 GGGGTTTCCTTCTCTTCCATCTT 59.989 47.826 0.00 0.00 0.00 2.40
51 52 2.578480 GGGGTTTCCTTCTCTTCCATCT 59.422 50.000 0.00 0.00 0.00 2.90
52 53 2.308866 TGGGGTTTCCTTCTCTTCCATC 59.691 50.000 0.00 0.00 36.20 3.51
53 54 2.358258 TGGGGTTTCCTTCTCTTCCAT 58.642 47.619 0.00 0.00 36.20 3.41
54 55 1.827792 TGGGGTTTCCTTCTCTTCCA 58.172 50.000 0.00 0.00 36.20 3.53
55 56 2.041755 ACATGGGGTTTCCTTCTCTTCC 59.958 50.000 0.00 0.00 36.20 3.46
56 57 3.348119 GACATGGGGTTTCCTTCTCTTC 58.652 50.000 0.00 0.00 36.20 2.87
57 58 2.041755 GGACATGGGGTTTCCTTCTCTT 59.958 50.000 0.00 0.00 36.20 2.85
58 59 1.636003 GGACATGGGGTTTCCTTCTCT 59.364 52.381 0.00 0.00 36.20 3.10
59 60 1.341089 GGGACATGGGGTTTCCTTCTC 60.341 57.143 0.00 0.00 36.20 2.87
60 61 0.704664 GGGACATGGGGTTTCCTTCT 59.295 55.000 0.00 0.00 36.20 2.85
61 62 0.407918 TGGGACATGGGGTTTCCTTC 59.592 55.000 0.00 0.00 36.20 3.46
62 63 2.575290 TGGGACATGGGGTTTCCTT 58.425 52.632 0.00 0.00 36.20 3.36
63 64 4.367590 TGGGACATGGGGTTTCCT 57.632 55.556 0.00 0.00 36.20 3.36
78 79 2.503331 TGTTTATGCCCGCTCATATGG 58.497 47.619 2.13 0.00 0.00 2.74
79 80 3.058016 CCTTGTTTATGCCCGCTCATATG 60.058 47.826 0.00 0.00 0.00 1.78
80 81 3.149196 CCTTGTTTATGCCCGCTCATAT 58.851 45.455 0.00 0.00 0.00 1.78
81 82 2.171659 TCCTTGTTTATGCCCGCTCATA 59.828 45.455 0.00 0.00 0.00 2.15
82 83 1.064758 TCCTTGTTTATGCCCGCTCAT 60.065 47.619 0.00 0.00 0.00 2.90
83 84 0.326595 TCCTTGTTTATGCCCGCTCA 59.673 50.000 0.00 0.00 0.00 4.26
84 85 1.017387 CTCCTTGTTTATGCCCGCTC 58.983 55.000 0.00 0.00 0.00 5.03
85 86 0.618458 TCTCCTTGTTTATGCCCGCT 59.382 50.000 0.00 0.00 0.00 5.52
86 87 1.132453 GTTCTCCTTGTTTATGCCCGC 59.868 52.381 0.00 0.00 0.00 6.13
87 88 2.432444 TGTTCTCCTTGTTTATGCCCG 58.568 47.619 0.00 0.00 0.00 6.13
88 89 4.864704 TTTGTTCTCCTTGTTTATGCCC 57.135 40.909 0.00 0.00 0.00 5.36
118 119 9.464714 CGATTACAAGAACACTAGTTATGCTAT 57.535 33.333 0.00 0.00 38.30 2.97
119 120 7.434307 GCGATTACAAGAACACTAGTTATGCTA 59.566 37.037 0.00 0.00 38.30 3.49
120 121 6.255887 GCGATTACAAGAACACTAGTTATGCT 59.744 38.462 0.00 0.00 38.30 3.79
121 122 6.255887 AGCGATTACAAGAACACTAGTTATGC 59.744 38.462 0.00 0.00 38.30 3.14
122 123 7.043325 GGAGCGATTACAAGAACACTAGTTATG 60.043 40.741 0.00 0.00 38.30 1.90
123 124 6.979238 GGAGCGATTACAAGAACACTAGTTAT 59.021 38.462 0.00 0.00 38.30 1.89
124 125 6.327934 GGAGCGATTACAAGAACACTAGTTA 58.672 40.000 0.00 0.00 38.30 2.24
125 126 5.169295 GGAGCGATTACAAGAACACTAGTT 58.831 41.667 0.00 0.00 41.64 2.24
126 127 4.381718 GGGAGCGATTACAAGAACACTAGT 60.382 45.833 0.00 0.00 0.00 2.57
127 128 4.113354 GGGAGCGATTACAAGAACACTAG 58.887 47.826 0.00 0.00 0.00 2.57
128 129 3.512329 TGGGAGCGATTACAAGAACACTA 59.488 43.478 0.00 0.00 0.00 2.74
129 130 2.301870 TGGGAGCGATTACAAGAACACT 59.698 45.455 0.00 0.00 0.00 3.55
130 131 2.695359 TGGGAGCGATTACAAGAACAC 58.305 47.619 0.00 0.00 0.00 3.32
131 132 3.410631 TTGGGAGCGATTACAAGAACA 57.589 42.857 0.00 0.00 0.00 3.18
132 133 4.759516 TTTTGGGAGCGATTACAAGAAC 57.240 40.909 0.00 0.00 0.00 3.01
133 134 5.975693 ATTTTTGGGAGCGATTACAAGAA 57.024 34.783 0.00 0.00 0.00 2.52
134 135 5.975693 AATTTTTGGGAGCGATTACAAGA 57.024 34.783 0.00 0.00 0.00 3.02
135 136 7.273381 CAGTAAATTTTTGGGAGCGATTACAAG 59.727 37.037 0.00 0.00 0.00 3.16
136 137 7.087639 CAGTAAATTTTTGGGAGCGATTACAA 58.912 34.615 0.00 0.00 0.00 2.41
137 138 6.616947 CAGTAAATTTTTGGGAGCGATTACA 58.383 36.000 0.00 0.00 0.00 2.41
138 139 5.515270 GCAGTAAATTTTTGGGAGCGATTAC 59.485 40.000 0.00 0.00 0.00 1.89
139 140 5.393678 GGCAGTAAATTTTTGGGAGCGATTA 60.394 40.000 0.00 0.00 0.00 1.75
140 141 4.494484 GCAGTAAATTTTTGGGAGCGATT 58.506 39.130 0.00 0.00 0.00 3.34
141 142 3.119137 GGCAGTAAATTTTTGGGAGCGAT 60.119 43.478 0.00 0.00 0.00 4.58
142 143 2.230266 GGCAGTAAATTTTTGGGAGCGA 59.770 45.455 0.00 0.00 0.00 4.93
143 144 2.606108 GGCAGTAAATTTTTGGGAGCG 58.394 47.619 0.00 0.00 0.00 5.03
144 145 2.567169 AGGGCAGTAAATTTTTGGGAGC 59.433 45.455 0.00 0.00 0.00 4.70
145 146 4.890158 AAGGGCAGTAAATTTTTGGGAG 57.110 40.909 0.00 0.00 0.00 4.30
146 147 5.841783 AGTTAAGGGCAGTAAATTTTTGGGA 59.158 36.000 0.00 0.00 0.00 4.37
147 148 6.109156 AGTTAAGGGCAGTAAATTTTTGGG 57.891 37.500 0.00 0.00 0.00 4.12
148 149 7.892609 ACTAGTTAAGGGCAGTAAATTTTTGG 58.107 34.615 0.00 0.00 0.00 3.28
149 150 8.793592 AGACTAGTTAAGGGCAGTAAATTTTTG 58.206 33.333 0.00 0.00 0.00 2.44
150 151 8.935614 AGACTAGTTAAGGGCAGTAAATTTTT 57.064 30.769 0.00 0.00 0.00 1.94
151 152 8.935614 AAGACTAGTTAAGGGCAGTAAATTTT 57.064 30.769 0.00 0.00 0.00 1.82
152 153 8.935614 AAAGACTAGTTAAGGGCAGTAAATTT 57.064 30.769 0.00 0.00 0.00 1.82
153 154 8.383947 AGAAAGACTAGTTAAGGGCAGTAAATT 58.616 33.333 0.00 0.00 0.00 1.82
154 155 7.919151 AGAAAGACTAGTTAAGGGCAGTAAAT 58.081 34.615 0.00 0.00 0.00 1.40
155 156 7.312415 AGAAAGACTAGTTAAGGGCAGTAAA 57.688 36.000 0.00 0.00 0.00 2.01
156 157 6.930068 AGAAAGACTAGTTAAGGGCAGTAA 57.070 37.500 0.00 0.00 0.00 2.24
157 158 6.930068 AAGAAAGACTAGTTAAGGGCAGTA 57.070 37.500 0.00 0.00 0.00 2.74
158 159 5.827326 AAGAAAGACTAGTTAAGGGCAGT 57.173 39.130 0.00 0.00 0.00 4.40
159 160 7.511959 AAAAAGAAAGACTAGTTAAGGGCAG 57.488 36.000 0.00 0.00 0.00 4.85
216 217 5.774630 ACAAAGGTGTTCTTTCGTCAAAAA 58.225 33.333 0.00 0.00 43.32 1.94
217 218 5.379732 ACAAAGGTGTTCTTTCGTCAAAA 57.620 34.783 0.00 0.00 43.32 2.44
218 219 6.072618 TGTTACAAAGGTGTTCTTTCGTCAAA 60.073 34.615 0.00 0.00 43.32 2.69
219 220 5.411977 TGTTACAAAGGTGTTCTTTCGTCAA 59.588 36.000 0.00 0.00 43.32 3.18
220 221 4.936411 TGTTACAAAGGTGTTCTTTCGTCA 59.064 37.500 0.00 0.00 43.32 4.35
221 222 5.292589 TCTGTTACAAAGGTGTTCTTTCGTC 59.707 40.000 0.00 0.00 43.32 4.20
222 223 5.064325 GTCTGTTACAAAGGTGTTCTTTCGT 59.936 40.000 0.00 0.00 43.32 3.85
223 224 5.499047 GTCTGTTACAAAGGTGTTCTTTCG 58.501 41.667 0.00 0.00 43.32 3.46
224 225 5.589050 AGGTCTGTTACAAAGGTGTTCTTTC 59.411 40.000 0.00 0.00 43.32 2.62
225 226 5.357032 CAGGTCTGTTACAAAGGTGTTCTTT 59.643 40.000 0.00 0.00 45.85 2.52
226 227 4.881850 CAGGTCTGTTACAAAGGTGTTCTT 59.118 41.667 0.00 0.00 39.30 2.52
227 228 4.451900 CAGGTCTGTTACAAAGGTGTTCT 58.548 43.478 0.00 0.00 39.30 3.01
228 229 3.564225 CCAGGTCTGTTACAAAGGTGTTC 59.436 47.826 0.00 0.00 39.30 3.18
229 230 3.551846 CCAGGTCTGTTACAAAGGTGTT 58.448 45.455 0.00 0.00 39.30 3.32
230 231 2.748465 GCCAGGTCTGTTACAAAGGTGT 60.748 50.000 0.00 0.00 42.09 4.16
231 232 1.880027 GCCAGGTCTGTTACAAAGGTG 59.120 52.381 0.00 0.00 0.00 4.00
232 233 1.202891 GGCCAGGTCTGTTACAAAGGT 60.203 52.381 0.00 0.00 0.00 3.50
233 234 1.202879 TGGCCAGGTCTGTTACAAAGG 60.203 52.381 0.00 0.00 0.00 3.11
234 235 2.270352 TGGCCAGGTCTGTTACAAAG 57.730 50.000 0.00 0.00 0.00 2.77
235 236 2.691011 GTTTGGCCAGGTCTGTTACAAA 59.309 45.455 5.11 0.00 0.00 2.83
236 237 2.303175 GTTTGGCCAGGTCTGTTACAA 58.697 47.619 5.11 0.00 0.00 2.41
237 238 1.812324 CGTTTGGCCAGGTCTGTTACA 60.812 52.381 5.11 0.00 0.00 2.41
238 239 0.872388 CGTTTGGCCAGGTCTGTTAC 59.128 55.000 5.11 0.00 0.00 2.50
239 240 0.250553 CCGTTTGGCCAGGTCTGTTA 60.251 55.000 5.11 0.00 0.00 2.41
240 241 1.528309 CCGTTTGGCCAGGTCTGTT 60.528 57.895 5.11 0.00 0.00 3.16
241 242 2.113139 CCGTTTGGCCAGGTCTGT 59.887 61.111 5.11 0.00 0.00 3.41
242 243 2.672996 CCCGTTTGGCCAGGTCTG 60.673 66.667 5.11 0.00 0.00 3.51
280 281 3.766691 ACGATTAGCACGGGCCGT 61.767 61.111 28.83 28.83 42.56 5.68
281 282 3.261951 CACGATTAGCACGGGCCG 61.262 66.667 27.06 27.06 42.56 6.13
284 285 2.173669 CAGGCACGATTAGCACGGG 61.174 63.158 0.00 0.00 37.22 5.28
285 286 3.398920 CAGGCACGATTAGCACGG 58.601 61.111 0.00 0.00 34.93 4.94
482 483 2.900337 GCTAAACGGGCCATCGGG 60.900 66.667 4.39 0.00 37.18 5.14
483 484 2.124901 TGCTAAACGGGCCATCGG 60.125 61.111 4.39 0.00 0.00 4.18
484 485 3.098555 GTGCTAAACGGGCCATCG 58.901 61.111 4.39 1.48 0.00 3.84
493 494 2.870372 CAGCCCAGCGTGCTAAAC 59.130 61.111 0.00 0.00 36.81 2.01
494 495 3.055719 GCAGCCCAGCGTGCTAAA 61.056 61.111 0.00 0.00 36.81 1.85
495 496 4.328025 TGCAGCCCAGCGTGCTAA 62.328 61.111 0.00 0.00 40.54 3.09
499 500 2.424705 AAAATGTGCAGCCCAGCGTG 62.425 55.000 0.00 0.00 37.31 5.34
500 501 2.146073 GAAAATGTGCAGCCCAGCGT 62.146 55.000 0.00 0.00 37.31 5.07
501 502 1.444895 GAAAATGTGCAGCCCAGCG 60.445 57.895 0.00 0.00 37.31 5.18
502 503 0.389426 CTGAAAATGTGCAGCCCAGC 60.389 55.000 0.00 0.00 0.00 4.85
503 504 3.806591 CTGAAAATGTGCAGCCCAG 57.193 52.632 0.00 0.00 0.00 4.45
508 509 0.601558 AGCAGGCTGAAAATGTGCAG 59.398 50.000 20.86 0.00 36.57 4.41
509 510 0.315886 CAGCAGGCTGAAAATGTGCA 59.684 50.000 20.86 0.00 46.30 4.57
510 511 0.389426 CCAGCAGGCTGAAAATGTGC 60.389 55.000 20.86 0.00 46.30 4.57
511 512 0.245539 CCCAGCAGGCTGAAAATGTG 59.754 55.000 20.86 4.69 46.30 3.21
512 513 2.662309 CCCAGCAGGCTGAAAATGT 58.338 52.632 20.86 0.00 46.30 2.71
522 523 0.890683 CTAAAAACCAGCCCAGCAGG 59.109 55.000 0.00 0.00 41.13 4.85
523 524 0.890683 CCTAAAAACCAGCCCAGCAG 59.109 55.000 0.00 0.00 0.00 4.24
524 525 1.184970 GCCTAAAAACCAGCCCAGCA 61.185 55.000 0.00 0.00 0.00 4.41
525 526 1.591703 GCCTAAAAACCAGCCCAGC 59.408 57.895 0.00 0.00 0.00 4.85
526 527 2.276869 GGCCTAAAAACCAGCCCAG 58.723 57.895 0.00 0.00 39.60 4.45
527 528 4.531351 GGCCTAAAAACCAGCCCA 57.469 55.556 0.00 0.00 39.60 5.36
529 530 2.430694 CCAATAGGCCTAAAAACCAGCC 59.569 50.000 18.42 0.00 46.13 4.85
530 531 2.430694 CCCAATAGGCCTAAAAACCAGC 59.569 50.000 18.42 0.00 0.00 4.85
595 596 1.002659 GGCAGGGCCCGTTTAATTTTT 59.997 47.619 18.44 0.00 44.06 1.94
596 597 0.611200 GGCAGGGCCCGTTTAATTTT 59.389 50.000 18.44 0.00 44.06 1.82
597 598 2.282827 GGCAGGGCCCGTTTAATTT 58.717 52.632 18.44 0.00 44.06 1.82
598 599 4.027884 GGCAGGGCCCGTTTAATT 57.972 55.556 18.44 0.00 44.06 1.40
682 683 3.527427 GGCATGGGCTAAACGGGC 61.527 66.667 0.00 0.00 40.87 6.13
683 684 3.209097 CGGCATGGGCTAAACGGG 61.209 66.667 0.00 0.00 40.87 5.28
684 685 2.437716 ACGGCATGGGCTAAACGG 60.438 61.111 0.00 0.00 40.87 4.44
685 686 2.791256 CACGGCATGGGCTAAACG 59.209 61.111 0.00 0.00 40.87 3.60
686 687 2.489751 GCACGGCATGGGCTAAAC 59.510 61.111 0.00 0.00 40.87 2.01
687 688 2.753849 GGCACGGCATGGGCTAAA 60.754 61.111 2.26 0.00 40.87 1.85
688 689 3.727258 AGGCACGGCATGGGCTAA 61.727 61.111 2.26 0.00 38.25 3.09
689 690 4.488136 CAGGCACGGCATGGGCTA 62.488 66.667 2.26 0.00 36.65 3.93
745 746 3.912745 AACGGGCCGGGCTAAACAG 62.913 63.158 31.78 14.11 0.00 3.16
746 747 3.494736 AAACGGGCCGGGCTAAACA 62.495 57.895 31.78 0.00 0.00 2.83
747 748 2.674033 AAACGGGCCGGGCTAAAC 60.674 61.111 31.78 10.12 0.00 2.01
748 749 2.673687 CAAACGGGCCGGGCTAAA 60.674 61.111 31.78 0.00 0.00 1.85
749 750 4.726304 CCAAACGGGCCGGGCTAA 62.726 66.667 31.78 0.00 0.00 3.09
758 759 0.180406 AGTATAGCTGGCCAAACGGG 59.820 55.000 7.01 0.00 40.85 5.28
759 760 2.038387 AAGTATAGCTGGCCAAACGG 57.962 50.000 7.01 0.00 0.00 4.44
760 761 2.747446 ACAAAGTATAGCTGGCCAAACG 59.253 45.455 7.01 0.00 0.00 3.60
761 762 5.890424 TTACAAAGTATAGCTGGCCAAAC 57.110 39.130 7.01 1.16 0.00 2.93
762 763 5.106475 CGTTTACAAAGTATAGCTGGCCAAA 60.106 40.000 7.01 0.00 0.00 3.28
763 764 4.393680 CGTTTACAAAGTATAGCTGGCCAA 59.606 41.667 7.01 0.00 0.00 4.52
764 765 3.936453 CGTTTACAAAGTATAGCTGGCCA 59.064 43.478 4.71 4.71 0.00 5.36
765 766 3.311596 CCGTTTACAAAGTATAGCTGGCC 59.688 47.826 0.00 0.00 0.00 5.36
766 767 3.311596 CCCGTTTACAAAGTATAGCTGGC 59.688 47.826 0.00 0.00 0.00 4.85
767 768 4.510571 ACCCGTTTACAAAGTATAGCTGG 58.489 43.478 0.00 0.00 0.00 4.85
768 769 5.172934 TGACCCGTTTACAAAGTATAGCTG 58.827 41.667 0.00 0.00 0.00 4.24
769 770 5.410355 TGACCCGTTTACAAAGTATAGCT 57.590 39.130 0.00 0.00 0.00 3.32
770 771 4.569564 CCTGACCCGTTTACAAAGTATAGC 59.430 45.833 0.00 0.00 0.00 2.97
771 772 5.727434 ACCTGACCCGTTTACAAAGTATAG 58.273 41.667 0.00 0.00 0.00 1.31
772 773 5.245751 TGACCTGACCCGTTTACAAAGTATA 59.754 40.000 0.00 0.00 0.00 1.47
773 774 4.040706 TGACCTGACCCGTTTACAAAGTAT 59.959 41.667 0.00 0.00 0.00 2.12
774 775 3.387374 TGACCTGACCCGTTTACAAAGTA 59.613 43.478 0.00 0.00 0.00 2.24
775 776 2.171027 TGACCTGACCCGTTTACAAAGT 59.829 45.455 0.00 0.00 0.00 2.66
776 777 2.806244 CTGACCTGACCCGTTTACAAAG 59.194 50.000 0.00 0.00 0.00 2.77
777 778 2.485835 CCTGACCTGACCCGTTTACAAA 60.486 50.000 0.00 0.00 0.00 2.83
778 779 1.071071 CCTGACCTGACCCGTTTACAA 59.929 52.381 0.00 0.00 0.00 2.41
779 780 0.682852 CCTGACCTGACCCGTTTACA 59.317 55.000 0.00 0.00 0.00 2.41
780 781 0.683412 ACCTGACCTGACCCGTTTAC 59.317 55.000 0.00 0.00 0.00 2.01
781 782 2.173519 CTACCTGACCTGACCCGTTTA 58.826 52.381 0.00 0.00 0.00 2.01
782 783 0.974383 CTACCTGACCTGACCCGTTT 59.026 55.000 0.00 0.00 0.00 3.60
783 784 1.542187 GCTACCTGACCTGACCCGTT 61.542 60.000 0.00 0.00 0.00 4.44
784 785 1.982938 GCTACCTGACCTGACCCGT 60.983 63.158 0.00 0.00 0.00 5.28
785 786 1.330655 ATGCTACCTGACCTGACCCG 61.331 60.000 0.00 0.00 0.00 5.28
786 787 0.179000 CATGCTACCTGACCTGACCC 59.821 60.000 0.00 0.00 0.00 4.46
787 788 1.137872 CTCATGCTACCTGACCTGACC 59.862 57.143 0.00 0.00 0.00 4.02
788 789 1.137872 CCTCATGCTACCTGACCTGAC 59.862 57.143 0.00 0.00 0.00 3.51
789 790 1.273267 ACCTCATGCTACCTGACCTGA 60.273 52.381 0.00 0.00 0.00 3.86
790 791 1.134580 CACCTCATGCTACCTGACCTG 60.135 57.143 0.00 0.00 0.00 4.00
791 792 1.198713 CACCTCATGCTACCTGACCT 58.801 55.000 0.00 0.00 0.00 3.85
792 793 1.134670 GTCACCTCATGCTACCTGACC 60.135 57.143 0.00 0.00 0.00 4.02
793 794 1.550524 TGTCACCTCATGCTACCTGAC 59.449 52.381 0.00 0.00 0.00 3.51
794 795 1.550524 GTGTCACCTCATGCTACCTGA 59.449 52.381 0.00 0.00 0.00 3.86
795 796 1.406069 GGTGTCACCTCATGCTACCTG 60.406 57.143 15.22 0.00 34.73 4.00
796 797 0.905357 GGTGTCACCTCATGCTACCT 59.095 55.000 15.22 0.00 34.73 3.08
797 798 0.460284 CGGTGTCACCTCATGCTACC 60.460 60.000 19.82 0.00 35.66 3.18
798 799 0.530744 TCGGTGTCACCTCATGCTAC 59.469 55.000 19.82 0.00 35.66 3.58
799 800 0.530744 GTCGGTGTCACCTCATGCTA 59.469 55.000 19.82 0.00 35.66 3.49
800 801 1.293498 GTCGGTGTCACCTCATGCT 59.707 57.895 19.82 0.00 35.66 3.79
801 802 2.094659 CGTCGGTGTCACCTCATGC 61.095 63.158 19.82 4.61 35.66 4.06
802 803 2.094659 GCGTCGGTGTCACCTCATG 61.095 63.158 19.82 12.07 35.66 3.07
803 804 2.261671 GCGTCGGTGTCACCTCAT 59.738 61.111 19.82 0.00 35.66 2.90
804 805 4.337060 CGCGTCGGTGTCACCTCA 62.337 66.667 19.82 3.45 35.66 3.86
805 806 4.338539 ACGCGTCGGTGTCACCTC 62.339 66.667 19.82 11.41 35.66 3.85
806 807 4.640855 CACGCGTCGGTGTCACCT 62.641 66.667 19.82 0.00 35.66 4.00
819 820 3.248446 TTACTCACAGGCCCCACGC 62.248 63.158 0.00 0.00 0.00 5.34
820 821 1.079127 CTTACTCACAGGCCCCACG 60.079 63.158 0.00 0.00 0.00 4.94
821 822 0.250513 CTCTTACTCACAGGCCCCAC 59.749 60.000 0.00 0.00 0.00 4.61
822 823 0.116342 TCTCTTACTCACAGGCCCCA 59.884 55.000 0.00 0.00 0.00 4.96
823 824 0.827368 CTCTCTTACTCACAGGCCCC 59.173 60.000 0.00 0.00 0.00 5.80
824 825 1.853963 TCTCTCTTACTCACAGGCCC 58.146 55.000 0.00 0.00 0.00 5.80
825 826 7.612244 TGTATATATCTCTCTTACTCACAGGCC 59.388 40.741 0.00 0.00 0.00 5.19
826 827 8.568676 TGTATATATCTCTCTTACTCACAGGC 57.431 38.462 0.00 0.00 0.00 4.85
827 828 9.952030 TCTGTATATATCTCTCTTACTCACAGG 57.048 37.037 0.00 0.00 31.67 4.00
829 830 9.952030 CCTCTGTATATATCTCTCTTACTCACA 57.048 37.037 0.00 0.00 0.00 3.58
832 833 9.326413 GCTCCTCTGTATATATCTCTCTTACTC 57.674 40.741 0.00 0.00 0.00 2.59
833 834 7.985184 CGCTCCTCTGTATATATCTCTCTTACT 59.015 40.741 0.00 0.00 0.00 2.24
834 835 7.254658 GCGCTCCTCTGTATATATCTCTCTTAC 60.255 44.444 0.00 0.00 0.00 2.34
835 836 6.764085 GCGCTCCTCTGTATATATCTCTCTTA 59.236 42.308 0.00 0.00 0.00 2.10
836 837 5.588648 GCGCTCCTCTGTATATATCTCTCTT 59.411 44.000 0.00 0.00 0.00 2.85
837 838 5.104527 AGCGCTCCTCTGTATATATCTCTCT 60.105 44.000 2.64 0.00 0.00 3.10
838 839 5.123227 AGCGCTCCTCTGTATATATCTCTC 58.877 45.833 2.64 0.00 0.00 3.20
839 840 5.110814 AGCGCTCCTCTGTATATATCTCT 57.889 43.478 2.64 0.00 0.00 3.10
840 841 6.764085 TCTTAGCGCTCCTCTGTATATATCTC 59.236 42.308 16.34 0.00 0.00 2.75
841 842 6.654959 TCTTAGCGCTCCTCTGTATATATCT 58.345 40.000 16.34 0.00 0.00 1.98
842 843 6.764085 TCTCTTAGCGCTCCTCTGTATATATC 59.236 42.308 16.34 0.00 0.00 1.63
843 844 6.540914 GTCTCTTAGCGCTCCTCTGTATATAT 59.459 42.308 16.34 0.00 0.00 0.86
844 845 5.875910 GTCTCTTAGCGCTCCTCTGTATATA 59.124 44.000 16.34 0.00 0.00 0.86
845 846 4.698304 GTCTCTTAGCGCTCCTCTGTATAT 59.302 45.833 16.34 0.00 0.00 0.86
846 847 4.066490 GTCTCTTAGCGCTCCTCTGTATA 58.934 47.826 16.34 0.00 0.00 1.47
847 848 2.882137 GTCTCTTAGCGCTCCTCTGTAT 59.118 50.000 16.34 0.00 0.00 2.29
848 849 2.092861 AGTCTCTTAGCGCTCCTCTGTA 60.093 50.000 16.34 0.00 0.00 2.74
849 850 1.099689 GTCTCTTAGCGCTCCTCTGT 58.900 55.000 16.34 0.00 0.00 3.41
850 851 1.065401 CAGTCTCTTAGCGCTCCTCTG 59.935 57.143 16.34 11.52 0.00 3.35
851 852 1.340600 ACAGTCTCTTAGCGCTCCTCT 60.341 52.381 16.34 2.17 0.00 3.69
852 853 1.064952 GACAGTCTCTTAGCGCTCCTC 59.935 57.143 16.34 0.00 0.00 3.71
853 854 1.099689 GACAGTCTCTTAGCGCTCCT 58.900 55.000 16.34 0.00 0.00 3.69
854 855 0.811915 TGACAGTCTCTTAGCGCTCC 59.188 55.000 16.34 0.00 0.00 4.70
855 856 2.255316 GTTGACAGTCTCTTAGCGCTC 58.745 52.381 16.34 0.00 0.00 5.03
856 857 1.613925 TGTTGACAGTCTCTTAGCGCT 59.386 47.619 17.26 17.26 0.00 5.92
857 858 1.989165 CTGTTGACAGTCTCTTAGCGC 59.011 52.381 0.00 0.00 39.09 5.92
858 859 2.600731 CCTGTTGACAGTCTCTTAGCG 58.399 52.381 10.03 0.00 42.27 4.26
859 860 2.933056 GCCCTGTTGACAGTCTCTTAGC 60.933 54.545 10.03 0.00 42.27 3.09
860 861 2.354203 GGCCCTGTTGACAGTCTCTTAG 60.354 54.545 10.03 0.00 42.27 2.18
861 862 1.623811 GGCCCTGTTGACAGTCTCTTA 59.376 52.381 10.03 0.00 42.27 2.10
862 863 0.398318 GGCCCTGTTGACAGTCTCTT 59.602 55.000 10.03 0.00 42.27 2.85
863 864 1.484444 GGGCCCTGTTGACAGTCTCT 61.484 60.000 17.04 0.00 42.27 3.10
864 865 1.003233 GGGCCCTGTTGACAGTCTC 60.003 63.158 17.04 0.00 42.27 3.36
865 866 1.770110 TGGGCCCTGTTGACAGTCT 60.770 57.895 25.70 0.00 42.27 3.24
866 867 1.600916 GTGGGCCCTGTTGACAGTC 60.601 63.158 25.70 0.00 42.27 3.51
867 868 2.056906 GAGTGGGCCCTGTTGACAGT 62.057 60.000 25.70 2.55 42.27 3.55
868 869 1.302832 GAGTGGGCCCTGTTGACAG 60.303 63.158 25.70 4.15 43.40 3.51
869 870 2.829384 GGAGTGGGCCCTGTTGACA 61.829 63.158 25.70 0.00 0.00 3.58
870 871 2.034221 GGAGTGGGCCCTGTTGAC 59.966 66.667 25.70 12.75 0.00 3.18
871 872 2.449518 TGGAGTGGGCCCTGTTGA 60.450 61.111 25.70 0.00 0.00 3.18
872 873 2.034687 CTGGAGTGGGCCCTGTTG 59.965 66.667 25.70 4.46 0.00 3.33
873 874 1.655114 AAACTGGAGTGGGCCCTGTT 61.655 55.000 25.70 14.51 44.30 3.16
874 875 2.084930 AAACTGGAGTGGGCCCTGT 61.085 57.895 25.70 10.24 37.44 4.00
875 876 1.604593 CAAACTGGAGTGGGCCCTG 60.605 63.158 25.70 5.25 0.00 4.45
876 877 2.845345 CCAAACTGGAGTGGGCCCT 61.845 63.158 25.70 2.15 40.96 5.19
889 890 2.481276 GGTGCTCTGTTTCAACCCAAAC 60.481 50.000 0.00 0.00 36.87 2.93
898 899 1.305201 TTTCGTGGGTGCTCTGTTTC 58.695 50.000 0.00 0.00 0.00 2.78
900 901 1.880027 GATTTTCGTGGGTGCTCTGTT 59.120 47.619 0.00 0.00 0.00 3.16
901 902 1.072331 AGATTTTCGTGGGTGCTCTGT 59.928 47.619 0.00 0.00 0.00 3.41
1047 1070 1.383664 CTGGGAGATGGGAGAGGCA 60.384 63.158 0.00 0.00 0.00 4.75
1114 1149 1.077716 CGAAGCTAGGGTTTGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
1366 1401 2.515057 AGAGCGCGAGAGACCGAT 60.515 61.111 12.10 0.00 0.00 4.18
1419 1456 0.663568 CGATGGATCTACGGCGGAAC 60.664 60.000 13.24 0.00 0.00 3.62
1617 1658 2.439701 CAGGTGAGCAGCCATGGG 60.440 66.667 15.13 0.00 0.00 4.00
1663 1704 0.948623 CCCAGAACATCGACACGCAA 60.949 55.000 0.00 0.00 0.00 4.85
1666 1707 2.579207 ATACCCAGAACATCGACACG 57.421 50.000 0.00 0.00 0.00 4.49
1708 1749 4.429522 AGCACCCATCGCATGCCA 62.430 61.111 13.15 0.00 40.33 4.92
1755 1796 4.254709 AAGTGCTCCACTGCGGCA 62.255 61.111 1.29 1.29 44.62 5.69
1759 1800 1.597742 TTCTTCAAGTGCTCCACTGC 58.402 50.000 0.00 0.00 44.62 4.40
1760 1801 4.037208 ACATTTTCTTCAAGTGCTCCACTG 59.963 41.667 0.00 0.00 44.62 3.66
1781 1822 1.059098 AGCATCTGACCACCTGAACA 58.941 50.000 0.00 0.00 0.00 3.18
1809 1850 4.518278 TGGAGCCTTGGAAATAGCAATA 57.482 40.909 0.00 0.00 0.00 1.90
1881 1922 4.089361 GTTCCAACCCCAAATCAGAGATT 58.911 43.478 0.00 0.00 0.00 2.40
1926 1967 3.369892 CCAGGCTGTACAAGAGCATTACT 60.370 47.826 14.43 0.00 38.27 2.24
2157 2198 0.688749 GGCCCATCCCTGCTTCATTT 60.689 55.000 0.00 0.00 0.00 2.32
2167 2209 0.760572 CAATTTCCATGGCCCATCCC 59.239 55.000 6.96 0.00 0.00 3.85
2176 2218 7.094420 TGTCATACACAGTTACCAATTTCCATG 60.094 37.037 0.00 0.00 0.00 3.66
2254 2307 5.340027 GGAAAACCAATCTCTATTCAGGGGA 60.340 44.000 0.00 0.00 0.00 4.81
2410 2502 5.814705 CGATGCTTTCATATCTATTCCCTCC 59.185 44.000 0.00 0.00 31.96 4.30
2412 2504 5.181748 GCGATGCTTTCATATCTATTCCCT 58.818 41.667 0.00 0.00 31.96 4.20
2547 2645 7.015682 ACAGTTCTCATCCTTTCTTGTTCTCTA 59.984 37.037 0.00 0.00 0.00 2.43
2740 2857 9.958125 AATCTTAGAAGGATAATGGGGAAAAAT 57.042 29.630 0.00 0.00 0.00 1.82
2774 2891 6.049955 TCAGGTACAGGATTTAGGAACAAG 57.950 41.667 0.00 0.00 0.00 3.16
2918 3088 9.581099 GGCCAATATCGATTTTTAGAAAGAAAA 57.419 29.630 1.71 0.00 0.00 2.29
2919 3089 7.913297 CGGCCAATATCGATTTTTAGAAAGAAA 59.087 33.333 1.71 0.00 0.00 2.52
2920 3090 7.281324 TCGGCCAATATCGATTTTTAGAAAGAA 59.719 33.333 1.71 0.00 0.00 2.52
2921 3091 6.764085 TCGGCCAATATCGATTTTTAGAAAGA 59.236 34.615 1.71 0.00 0.00 2.52
2922 3092 6.954944 TCGGCCAATATCGATTTTTAGAAAG 58.045 36.000 1.71 0.00 0.00 2.62
2923 3093 6.764085 TCTCGGCCAATATCGATTTTTAGAAA 59.236 34.615 1.71 0.00 34.77 2.52
2924 3094 6.285224 TCTCGGCCAATATCGATTTTTAGAA 58.715 36.000 1.71 0.00 34.77 2.10
2925 3095 5.849510 TCTCGGCCAATATCGATTTTTAGA 58.150 37.500 1.71 0.00 34.77 2.10
2926 3096 5.926542 TCTCTCGGCCAATATCGATTTTTAG 59.073 40.000 1.71 0.00 34.77 1.85
2927 3097 5.694910 GTCTCTCGGCCAATATCGATTTTTA 59.305 40.000 1.71 0.00 34.77 1.52
2928 3098 4.511826 GTCTCTCGGCCAATATCGATTTTT 59.488 41.667 1.71 0.00 34.77 1.94
2929 3099 4.058817 GTCTCTCGGCCAATATCGATTTT 58.941 43.478 1.71 0.00 34.77 1.82
2930 3100 3.069586 TGTCTCTCGGCCAATATCGATTT 59.930 43.478 1.71 0.00 34.77 2.17
2931 3101 2.628178 TGTCTCTCGGCCAATATCGATT 59.372 45.455 1.71 0.00 34.77 3.34
2932 3102 2.239400 TGTCTCTCGGCCAATATCGAT 58.761 47.619 2.24 2.16 34.77 3.59
2933 3103 1.687563 TGTCTCTCGGCCAATATCGA 58.312 50.000 2.24 0.00 0.00 3.59
2934 3104 2.509052 TTGTCTCTCGGCCAATATCG 57.491 50.000 2.24 0.00 0.00 2.92
2935 3105 3.995199 TGATTGTCTCTCGGCCAATATC 58.005 45.455 2.24 0.00 0.00 1.63
2936 3106 4.422073 TTGATTGTCTCTCGGCCAATAT 57.578 40.909 2.24 0.00 0.00 1.28
2937 3107 3.904800 TTGATTGTCTCTCGGCCAATA 57.095 42.857 2.24 0.00 0.00 1.90
2938 3108 2.787473 TTGATTGTCTCTCGGCCAAT 57.213 45.000 2.24 0.00 0.00 3.16
2939 3109 2.559698 TTTGATTGTCTCTCGGCCAA 57.440 45.000 2.24 0.00 0.00 4.52
2940 3110 2.787473 ATTTGATTGTCTCTCGGCCA 57.213 45.000 2.24 0.00 0.00 5.36
2941 3111 4.060038 TCTATTTGATTGTCTCTCGGCC 57.940 45.455 0.00 0.00 0.00 6.13
2942 3112 6.610741 AAATCTATTTGATTGTCTCTCGGC 57.389 37.500 0.00 0.00 43.99 5.54
2950 3120 9.994432 CGCTAAAGAGAAAATCTATTTGATTGT 57.006 29.630 9.55 0.00 43.99 2.71
2951 3121 9.443283 CCGCTAAAGAGAAAATCTATTTGATTG 57.557 33.333 9.55 1.01 43.99 2.67
2952 3122 8.624776 CCCGCTAAAGAGAAAATCTATTTGATT 58.375 33.333 9.55 0.00 46.49 2.57
2953 3123 7.255277 GCCCGCTAAAGAGAAAATCTATTTGAT 60.255 37.037 9.55 0.00 38.27 2.57
2954 3124 6.038271 GCCCGCTAAAGAGAAAATCTATTTGA 59.962 38.462 9.55 0.00 38.27 2.69
2955 3125 6.183360 TGCCCGCTAAAGAGAAAATCTATTTG 60.183 38.462 9.55 2.81 38.27 2.32
2956 3126 5.885912 TGCCCGCTAAAGAGAAAATCTATTT 59.114 36.000 5.45 5.45 40.54 1.40
2957 3127 5.437060 TGCCCGCTAAAGAGAAAATCTATT 58.563 37.500 0.00 0.00 37.23 1.73
2958 3128 5.036117 TGCCCGCTAAAGAGAAAATCTAT 57.964 39.130 0.00 0.00 37.23 1.98
2959 3129 4.481368 TGCCCGCTAAAGAGAAAATCTA 57.519 40.909 0.00 0.00 37.23 1.98
2960 3130 3.350219 TGCCCGCTAAAGAGAAAATCT 57.650 42.857 0.00 0.00 41.27 2.40
2961 3131 4.639135 AATGCCCGCTAAAGAGAAAATC 57.361 40.909 0.00 0.00 0.00 2.17
2962 3132 4.142160 GGAAATGCCCGCTAAAGAGAAAAT 60.142 41.667 0.00 0.00 0.00 1.82
2963 3133 3.192633 GGAAATGCCCGCTAAAGAGAAAA 59.807 43.478 0.00 0.00 0.00 2.29
2964 3134 2.752903 GGAAATGCCCGCTAAAGAGAAA 59.247 45.455 0.00 0.00 0.00 2.52
2965 3135 2.290641 TGGAAATGCCCGCTAAAGAGAA 60.291 45.455 0.00 0.00 34.97 2.87
2966 3136 1.280710 TGGAAATGCCCGCTAAAGAGA 59.719 47.619 0.00 0.00 34.97 3.10
2967 3137 1.750193 TGGAAATGCCCGCTAAAGAG 58.250 50.000 0.00 0.00 34.97 2.85
2968 3138 2.435372 ATGGAAATGCCCGCTAAAGA 57.565 45.000 0.00 0.00 34.97 2.52
2969 3139 4.396166 CCTATATGGAAATGCCCGCTAAAG 59.604 45.833 0.00 0.00 38.35 1.85
2970 3140 4.042311 TCCTATATGGAAATGCCCGCTAAA 59.958 41.667 0.00 0.00 42.94 1.85
2971 3141 3.585289 TCCTATATGGAAATGCCCGCTAA 59.415 43.478 0.00 0.00 42.94 3.09
2972 3142 3.178046 TCCTATATGGAAATGCCCGCTA 58.822 45.455 0.00 0.00 42.94 4.26
2973 3143 1.985159 TCCTATATGGAAATGCCCGCT 59.015 47.619 0.00 0.00 42.94 5.52
2974 3144 2.489938 TCCTATATGGAAATGCCCGC 57.510 50.000 0.00 0.00 42.94 6.13
3053 3223 9.705290 GAACCCTTTTTGCTTTCTTGATAAATA 57.295 29.630 0.00 0.00 0.00 1.40
3054 3224 8.432013 AGAACCCTTTTTGCTTTCTTGATAAAT 58.568 29.630 0.00 0.00 0.00 1.40
3055 3225 7.791029 AGAACCCTTTTTGCTTTCTTGATAAA 58.209 30.769 0.00 0.00 0.00 1.40
3056 3226 7.360113 AGAACCCTTTTTGCTTTCTTGATAA 57.640 32.000 0.00 0.00 0.00 1.75
3057 3227 6.976934 AGAACCCTTTTTGCTTTCTTGATA 57.023 33.333 0.00 0.00 0.00 2.15
3058 3228 5.876651 AGAACCCTTTTTGCTTTCTTGAT 57.123 34.783 0.00 0.00 0.00 2.57
3059 3229 5.675684 AAGAACCCTTTTTGCTTTCTTGA 57.324 34.783 0.00 0.00 35.64 3.02
3060 3230 7.169813 GTGATAAGAACCCTTTTTGCTTTCTTG 59.830 37.037 5.37 0.00 37.17 3.02
3061 3231 7.210174 GTGATAAGAACCCTTTTTGCTTTCTT 58.790 34.615 0.00 0.00 39.33 2.52
3062 3232 6.239317 GGTGATAAGAACCCTTTTTGCTTTCT 60.239 38.462 0.00 0.00 33.94 2.52
3063 3233 5.926542 GGTGATAAGAACCCTTTTTGCTTTC 59.073 40.000 0.00 0.00 33.94 2.62
3064 3234 5.853936 GGTGATAAGAACCCTTTTTGCTTT 58.146 37.500 0.00 0.00 33.94 3.51
3065 3235 5.468540 GGTGATAAGAACCCTTTTTGCTT 57.531 39.130 0.00 0.00 33.94 3.91
3075 3245 6.014156 AGCATAGTATCAGGGTGATAAGAACC 60.014 42.308 0.00 0.00 40.64 3.62
3076 3246 6.870965 CAGCATAGTATCAGGGTGATAAGAAC 59.129 42.308 0.00 0.00 40.64 3.01
3077 3247 6.554982 ACAGCATAGTATCAGGGTGATAAGAA 59.445 38.462 5.45 0.00 40.64 2.52
3078 3248 6.077993 ACAGCATAGTATCAGGGTGATAAGA 58.922 40.000 5.45 0.00 40.64 2.10
3079 3249 6.352016 ACAGCATAGTATCAGGGTGATAAG 57.648 41.667 5.45 0.00 40.64 1.73
3080 3250 7.849322 TTACAGCATAGTATCAGGGTGATAA 57.151 36.000 5.45 0.19 40.64 1.75
3081 3251 7.509318 ACTTTACAGCATAGTATCAGGGTGATA 59.491 37.037 5.45 0.00 38.26 2.15
3082 3252 6.327626 ACTTTACAGCATAGTATCAGGGTGAT 59.672 38.462 5.45 0.00 40.72 3.06
3083 3253 5.661312 ACTTTACAGCATAGTATCAGGGTGA 59.339 40.000 5.45 0.00 33.31 4.02
3084 3254 5.918608 ACTTTACAGCATAGTATCAGGGTG 58.081 41.667 0.00 0.00 35.07 4.61
3085 3255 6.561519 AACTTTACAGCATAGTATCAGGGT 57.438 37.500 0.00 0.00 0.00 4.34
3165 3338 4.524802 TCCTTGTGAGGGCATATGAAAT 57.475 40.909 6.97 0.00 43.72 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.