Multiple sequence alignment - TraesCS1B01G046000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G046000 chr1B 100.000 4890 0 0 1 4890 25946792 25941903 0.000000e+00 9031.0
1 TraesCS1B01G046000 chr1B 88.103 2883 304 26 1098 3965 26485873 26488731 0.000000e+00 3387.0
2 TraesCS1B01G046000 chr1B 88.103 2883 304 26 1098 3965 26495117 26497975 0.000000e+00 3387.0
3 TraesCS1B01G046000 chr1B 89.094 2054 200 14 1917 3967 26427985 26430017 0.000000e+00 2531.0
4 TraesCS1B01G046000 chr1B 86.995 2276 242 29 1917 4164 25895092 25892843 0.000000e+00 2514.0
5 TraesCS1B01G046000 chr1B 89.535 1978 183 15 1867 3841 25820758 25818802 0.000000e+00 2484.0
6 TraesCS1B01G046000 chr1B 81.609 1566 195 50 269 1756 25822321 25820771 0.000000e+00 1210.0
7 TraesCS1B01G046000 chr1B 89.100 789 78 4 911 1691 26426561 26427349 0.000000e+00 974.0
8 TraesCS1B01G046000 chr1B 91.903 704 37 8 412 1095 26494261 26494964 0.000000e+00 966.0
9 TraesCS1B01G046000 chr1B 97.232 542 13 2 4172 4713 648089717 648089178 0.000000e+00 917.0
10 TraesCS1B01G046000 chr1B 97.059 544 13 2 4173 4713 634835791 634836334 0.000000e+00 913.0
11 TraesCS1B01G046000 chr1B 97.059 544 12 3 4173 4713 634904800 634905342 0.000000e+00 913.0
12 TraesCS1B01G046000 chr1B 96.673 541 16 2 4173 4713 526008142 526007604 0.000000e+00 898.0
13 TraesCS1B01G046000 chr1B 85.969 784 107 2 911 1691 25896805 25896022 0.000000e+00 835.0
14 TraesCS1B01G046000 chr1B 86.100 518 55 5 3404 3920 26433237 26433738 4.310000e-150 542.0
15 TraesCS1B01G046000 chr1B 98.462 195 2 1 220 414 26484352 26484545 4.690000e-90 342.0
16 TraesCS1B01G046000 chr1B 98.462 195 2 1 220 414 26493632 26493825 4.690000e-90 342.0
17 TraesCS1B01G046000 chr1B 83.333 96 15 1 3838 3932 25815885 25815790 2.420000e-13 87.9
18 TraesCS1B01G046000 chr1B 83.333 96 15 1 3838 3932 25826838 25826743 2.420000e-13 87.9
19 TraesCS1B01G046000 chr1A 88.733 3071 290 32 911 3965 19933259 19930229 0.000000e+00 3703.0
20 TraesCS1B01G046000 chr1A 81.843 369 37 18 265 611 19933977 19933617 2.880000e-72 283.0
21 TraesCS1B01G046000 chr1D 90.035 2278 199 17 1917 4176 17651039 17648772 0.000000e+00 2924.0
22 TraesCS1B01G046000 chr1D 78.929 1998 365 35 1915 3884 17659216 17657247 0.000000e+00 1306.0
23 TraesCS1B01G046000 chr1D 83.333 876 131 3 830 1691 17652428 17651554 0.000000e+00 795.0
24 TraesCS1B01G046000 chr1D 82.714 781 131 4 910 1689 17663023 17662246 0.000000e+00 691.0
25 TraesCS1B01G046000 chr1D 85.865 474 42 16 298 757 17652895 17652433 9.520000e-132 481.0
26 TraesCS1B01G046000 chr3B 97.043 541 15 1 4173 4713 27356839 27357378 0.000000e+00 909.0
27 TraesCS1B01G046000 chr3B 99.459 185 1 0 4706 4890 609416551 609416735 2.180000e-88 337.0
28 TraesCS1B01G046000 chr7B 96.709 547 15 2 4169 4713 714699890 714699345 0.000000e+00 907.0
29 TraesCS1B01G046000 chr7B 96.858 541 15 1 4173 4713 505088137 505087599 0.000000e+00 904.0
30 TraesCS1B01G046000 chr7B 96.350 548 16 3 4169 4713 29885331 29885877 0.000000e+00 898.0
31 TraesCS1B01G046000 chr2B 96.863 542 13 3 4173 4713 639765897 639766435 0.000000e+00 904.0
32 TraesCS1B01G046000 chr7A 76.445 1609 340 34 1917 3508 15539280 15537694 0.000000e+00 835.0
33 TraesCS1B01G046000 chr5B 78.780 787 154 10 912 1690 710342795 710343576 2.610000e-142 516.0
34 TraesCS1B01G046000 chr5B 75.364 755 168 14 948 1691 704109905 704109158 1.010000e-91 348.0
35 TraesCS1B01G046000 chr5D 76.393 754 167 8 948 1691 558716201 558716953 3.550000e-106 396.0
36 TraesCS1B01G046000 chr6B 99.459 185 1 0 4706 4890 204527591 204527775 2.180000e-88 337.0
37 TraesCS1B01G046000 chr6B 99.459 185 1 0 4706 4890 643595957 643595773 2.180000e-88 337.0
38 TraesCS1B01G046000 chr4A 99.459 185 1 0 4706 4890 732047097 732046913 2.180000e-88 337.0
39 TraesCS1B01G046000 chr4A 74.786 234 51 8 3654 3883 726299262 726299491 1.120000e-16 99.0
40 TraesCS1B01G046000 chrUn 98.919 185 2 0 4706 4890 254425687 254425871 1.010000e-86 331.0
41 TraesCS1B01G046000 chrUn 98.919 185 2 0 4706 4890 256724061 256723877 1.010000e-86 331.0
42 TraesCS1B01G046000 chrUn 98.919 185 2 0 4706 4890 274499772 274499956 1.010000e-86 331.0
43 TraesCS1B01G046000 chrUn 98.919 185 2 0 4706 4890 275081077 275080893 1.010000e-86 331.0
44 TraesCS1B01G046000 chrUn 98.919 185 2 0 4706 4890 280541029 280541213 1.010000e-86 331.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G046000 chr1B 25941903 25946792 4889 True 9031.000000 9031 100.000000 1 4890 1 chr1B.!!$R2 4889
1 TraesCS1B01G046000 chr1B 26484352 26488731 4379 False 1864.500000 3387 93.282500 220 3965 2 chr1B.!!$F4 3745
2 TraesCS1B01G046000 chr1B 25892843 25896805 3962 True 1674.500000 2514 86.482000 911 4164 2 chr1B.!!$R6 3253
3 TraesCS1B01G046000 chr1B 26493632 26497975 4343 False 1565.000000 3387 92.822667 220 3965 3 chr1B.!!$F5 3745
4 TraesCS1B01G046000 chr1B 26426561 26433738 7177 False 1349.000000 2531 88.098000 911 3967 3 chr1B.!!$F3 3056
5 TraesCS1B01G046000 chr1B 25815790 25822321 6531 True 1260.633333 2484 84.825667 269 3932 3 chr1B.!!$R5 3663
6 TraesCS1B01G046000 chr1B 648089178 648089717 539 True 917.000000 917 97.232000 4172 4713 1 chr1B.!!$R4 541
7 TraesCS1B01G046000 chr1B 634835791 634836334 543 False 913.000000 913 97.059000 4173 4713 1 chr1B.!!$F1 540
8 TraesCS1B01G046000 chr1B 634904800 634905342 542 False 913.000000 913 97.059000 4173 4713 1 chr1B.!!$F2 540
9 TraesCS1B01G046000 chr1B 526007604 526008142 538 True 898.000000 898 96.673000 4173 4713 1 chr1B.!!$R3 540
10 TraesCS1B01G046000 chr1A 19930229 19933977 3748 True 1993.000000 3703 85.288000 265 3965 2 chr1A.!!$R1 3700
11 TraesCS1B01G046000 chr1D 17648772 17652895 4123 True 1400.000000 2924 86.411000 298 4176 3 chr1D.!!$R1 3878
12 TraesCS1B01G046000 chr1D 17657247 17663023 5776 True 998.500000 1306 80.821500 910 3884 2 chr1D.!!$R2 2974
13 TraesCS1B01G046000 chr3B 27356839 27357378 539 False 909.000000 909 97.043000 4173 4713 1 chr3B.!!$F1 540
14 TraesCS1B01G046000 chr7B 714699345 714699890 545 True 907.000000 907 96.709000 4169 4713 1 chr7B.!!$R2 544
15 TraesCS1B01G046000 chr7B 505087599 505088137 538 True 904.000000 904 96.858000 4173 4713 1 chr7B.!!$R1 540
16 TraesCS1B01G046000 chr7B 29885331 29885877 546 False 898.000000 898 96.350000 4169 4713 1 chr7B.!!$F1 544
17 TraesCS1B01G046000 chr2B 639765897 639766435 538 False 904.000000 904 96.863000 4173 4713 1 chr2B.!!$F1 540
18 TraesCS1B01G046000 chr7A 15537694 15539280 1586 True 835.000000 835 76.445000 1917 3508 1 chr7A.!!$R1 1591
19 TraesCS1B01G046000 chr5B 710342795 710343576 781 False 516.000000 516 78.780000 912 1690 1 chr5B.!!$F1 778
20 TraesCS1B01G046000 chr5B 704109158 704109905 747 True 348.000000 348 75.364000 948 1691 1 chr5B.!!$R1 743
21 TraesCS1B01G046000 chr5D 558716201 558716953 752 False 396.000000 396 76.393000 948 1691 1 chr5D.!!$F1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.039326 AGCTTTCTGCATCCAAGCCT 59.961 50.0 16.87 6.13 43.40 4.58 F
159 160 0.179029 ATGGGTAGCCACATAACGCC 60.179 55.0 17.60 0.00 0.00 5.68 F
181 182 0.250727 CCCAACCACACCGAACAGAT 60.251 55.0 0.00 0.00 0.00 2.90 F
1440 3292 0.319900 AGAACAAGCAGCATCGTCGT 60.320 50.0 0.00 0.00 0.00 4.34 F
1477 3329 0.466739 GTTCGGTGGGTTGGGAAAGT 60.467 55.0 0.00 0.00 0.00 2.66 F
1799 6324 0.968405 ATGAACACCATTGCACCACC 59.032 50.0 0.00 0.00 29.34 4.61 F
2958 8303 1.112113 TCGGAGCTACCATCTGGAAC 58.888 55.0 2.55 0.00 38.90 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 3223 0.248134 GATCGTCTCTTGGACCGTCG 60.248 60.0 0.00 0.00 41.64 5.12 R
1889 7228 0.748450 TGGAGTAGGGGCGTAAATCG 59.252 55.0 0.00 0.00 43.12 3.34 R
1896 7235 1.258445 AAGACAGTGGAGTAGGGGCG 61.258 60.0 0.00 0.00 0.00 6.13 R
3010 8355 0.179103 CAATTCTGGCCGGCAATTCC 60.179 55.0 30.85 11.16 0.00 3.01 R
3068 8413 2.024176 ATTCCACGCCACAGATGTAC 57.976 50.0 0.00 0.00 0.00 2.90 R
3646 12801 0.321653 CCTCAAACAGAAGGGTCCCG 60.322 60.0 0.99 0.00 0.00 5.14 R
4816 16925 0.030235 TCCTCACGACAACACGACTG 59.970 55.0 0.00 0.00 37.03 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.827411 CTAGTAAGAAAAACAATTAGTCCAAGC 57.173 33.333 0.00 0.00 0.00 4.01
34 35 8.465273 AGTAAGAAAAACAATTAGTCCAAGCT 57.535 30.769 0.00 0.00 0.00 3.74
35 36 8.914011 AGTAAGAAAAACAATTAGTCCAAGCTT 58.086 29.630 0.00 0.00 0.00 3.74
36 37 9.529325 GTAAGAAAAACAATTAGTCCAAGCTTT 57.471 29.630 0.00 0.00 0.00 3.51
37 38 8.648557 AAGAAAAACAATTAGTCCAAGCTTTC 57.351 30.769 0.00 0.00 0.00 2.62
38 39 8.011844 AGAAAAACAATTAGTCCAAGCTTTCT 57.988 30.769 0.00 0.00 0.00 2.52
39 40 7.922811 AGAAAAACAATTAGTCCAAGCTTTCTG 59.077 33.333 0.00 0.00 30.43 3.02
40 41 4.773323 ACAATTAGTCCAAGCTTTCTGC 57.227 40.909 0.00 0.00 43.29 4.26
41 42 4.144297 ACAATTAGTCCAAGCTTTCTGCA 58.856 39.130 0.00 0.00 45.94 4.41
42 43 4.768968 ACAATTAGTCCAAGCTTTCTGCAT 59.231 37.500 0.00 0.00 45.94 3.96
43 44 5.105997 ACAATTAGTCCAAGCTTTCTGCATC 60.106 40.000 0.00 0.00 45.94 3.91
44 45 1.831580 AGTCCAAGCTTTCTGCATCC 58.168 50.000 0.00 0.00 45.94 3.51
45 46 1.074405 AGTCCAAGCTTTCTGCATCCA 59.926 47.619 0.00 0.00 45.94 3.41
46 47 1.888512 GTCCAAGCTTTCTGCATCCAA 59.111 47.619 0.00 0.00 45.94 3.53
47 48 2.094854 GTCCAAGCTTTCTGCATCCAAG 60.095 50.000 0.00 0.00 45.94 3.61
48 49 1.403780 CCAAGCTTTCTGCATCCAAGC 60.404 52.381 14.01 14.01 45.94 4.01
49 50 0.893447 AAGCTTTCTGCATCCAAGCC 59.107 50.000 16.87 4.44 43.40 4.35
50 51 0.039326 AGCTTTCTGCATCCAAGCCT 59.961 50.000 16.87 6.13 43.40 4.58
51 52 0.893447 GCTTTCTGCATCCAAGCCTT 59.107 50.000 11.74 0.00 42.31 4.35
52 53 1.135170 GCTTTCTGCATCCAAGCCTTC 60.135 52.381 11.74 0.00 42.31 3.46
53 54 2.165167 CTTTCTGCATCCAAGCCTTCA 58.835 47.619 0.00 0.00 0.00 3.02
54 55 1.830279 TTCTGCATCCAAGCCTTCAG 58.170 50.000 0.00 0.00 0.00 3.02
55 56 0.679002 TCTGCATCCAAGCCTTCAGC 60.679 55.000 0.00 0.00 44.25 4.26
66 67 2.260844 GCCTTCAGCTATATGTGGCA 57.739 50.000 0.00 0.00 39.17 4.92
67 68 2.149578 GCCTTCAGCTATATGTGGCAG 58.850 52.381 0.00 0.00 39.17 4.85
68 69 2.149578 CCTTCAGCTATATGTGGCAGC 58.850 52.381 0.00 0.00 33.68 5.25
69 70 2.149578 CTTCAGCTATATGTGGCAGCC 58.850 52.381 3.66 3.66 35.88 4.85
70 71 1.130777 TCAGCTATATGTGGCAGCCA 58.869 50.000 11.22 11.22 35.88 4.75
84 85 5.828299 TGGCAGCCACATAATAAGTAAAC 57.172 39.130 11.22 0.00 0.00 2.01
85 86 5.257262 TGGCAGCCACATAATAAGTAAACA 58.743 37.500 11.22 0.00 0.00 2.83
86 87 5.712446 TGGCAGCCACATAATAAGTAAACAA 59.288 36.000 11.22 0.00 0.00 2.83
87 88 6.209589 TGGCAGCCACATAATAAGTAAACAAA 59.790 34.615 11.22 0.00 0.00 2.83
88 89 7.093992 GGCAGCCACATAATAAGTAAACAAAA 58.906 34.615 6.55 0.00 0.00 2.44
89 90 7.600752 GGCAGCCACATAATAAGTAAACAAAAA 59.399 33.333 6.55 0.00 0.00 1.94
113 114 9.927668 AAAACAAGATTATATGGGTCAAAGTTG 57.072 29.630 0.00 0.00 0.00 3.16
114 115 7.100458 ACAAGATTATATGGGTCAAAGTTGC 57.900 36.000 0.00 0.00 0.00 4.17
115 116 6.096846 ACAAGATTATATGGGTCAAAGTTGCC 59.903 38.462 0.00 0.00 0.00 4.52
116 117 4.821805 AGATTATATGGGTCAAAGTTGCCG 59.178 41.667 0.00 0.00 0.00 5.69
117 118 2.799126 ATATGGGTCAAAGTTGCCGA 57.201 45.000 0.00 0.00 0.00 5.54
118 119 1.816074 TATGGGTCAAAGTTGCCGAC 58.184 50.000 0.00 0.00 0.00 4.79
120 121 2.943653 GGTCAAAGTTGCCGACCG 59.056 61.111 4.20 0.00 39.86 4.79
121 122 2.251371 GTCAAAGTTGCCGACCGC 59.749 61.111 0.00 0.00 38.31 5.68
131 132 4.473520 CCGACCGCATCCAAGCCT 62.474 66.667 0.00 0.00 0.00 4.58
132 133 2.436646 CGACCGCATCCAAGCCTT 60.437 61.111 0.00 0.00 0.00 4.35
133 134 2.753966 CGACCGCATCCAAGCCTTG 61.754 63.158 0.00 0.00 0.00 3.61
134 135 1.675641 GACCGCATCCAAGCCTTGT 60.676 57.895 3.37 0.00 0.00 3.16
135 136 1.926511 GACCGCATCCAAGCCTTGTG 61.927 60.000 3.37 0.00 0.00 3.33
136 137 2.180017 CGCATCCAAGCCTTGTGC 59.820 61.111 9.37 9.37 41.71 4.57
148 149 2.427506 GCCTTGTGCTATATGGGTAGC 58.572 52.381 0.00 0.00 45.71 3.58
149 150 2.876079 GCCTTGTGCTATATGGGTAGCC 60.876 54.545 3.29 3.29 45.07 3.93
150 151 2.371841 CCTTGTGCTATATGGGTAGCCA 59.628 50.000 17.55 17.55 45.07 4.75
151 152 3.403038 CTTGTGCTATATGGGTAGCCAC 58.597 50.000 17.60 3.45 45.07 5.01
152 153 2.403561 TGTGCTATATGGGTAGCCACA 58.596 47.619 17.60 4.62 45.07 4.17
153 154 2.978978 TGTGCTATATGGGTAGCCACAT 59.021 45.455 17.60 13.57 45.07 3.21
154 155 4.164204 TGTGCTATATGGGTAGCCACATA 58.836 43.478 17.60 14.05 45.07 2.29
155 156 4.595350 TGTGCTATATGGGTAGCCACATAA 59.405 41.667 17.60 2.56 45.07 1.90
156 157 4.935808 GTGCTATATGGGTAGCCACATAAC 59.064 45.833 17.60 10.76 45.07 1.89
157 158 4.181578 GCTATATGGGTAGCCACATAACG 58.818 47.826 17.60 4.98 40.92 3.18
158 159 2.536761 TATGGGTAGCCACATAACGC 57.463 50.000 17.60 0.00 0.00 4.84
159 160 0.179029 ATGGGTAGCCACATAACGCC 60.179 55.000 17.60 0.00 0.00 5.68
160 161 1.885850 GGGTAGCCACATAACGCCG 60.886 63.158 5.96 0.00 0.00 6.46
161 162 1.885850 GGTAGCCACATAACGCCGG 60.886 63.158 0.00 0.00 0.00 6.13
162 163 2.202960 TAGCCACATAACGCCGGC 60.203 61.111 19.07 19.07 45.23 6.13
163 164 3.743534 TAGCCACATAACGCCGGCC 62.744 63.158 23.46 2.61 46.08 6.13
165 166 4.787286 CCACATAACGCCGGCCCA 62.787 66.667 23.46 6.25 0.00 5.36
166 167 2.748251 CACATAACGCCGGCCCAA 60.748 61.111 23.46 6.24 0.00 4.12
167 168 2.748647 ACATAACGCCGGCCCAAC 60.749 61.111 23.46 0.00 0.00 3.77
168 169 3.514362 CATAACGCCGGCCCAACC 61.514 66.667 23.46 0.00 0.00 3.77
169 170 4.036430 ATAACGCCGGCCCAACCA 62.036 61.111 23.46 0.00 39.03 3.67
177 178 3.292159 GGCCCAACCACACCGAAC 61.292 66.667 0.00 0.00 38.86 3.95
178 179 2.517402 GCCCAACCACACCGAACA 60.517 61.111 0.00 0.00 0.00 3.18
179 180 2.551912 GCCCAACCACACCGAACAG 61.552 63.158 0.00 0.00 0.00 3.16
180 181 1.147376 CCCAACCACACCGAACAGA 59.853 57.895 0.00 0.00 0.00 3.41
181 182 0.250727 CCCAACCACACCGAACAGAT 60.251 55.000 0.00 0.00 0.00 2.90
182 183 1.002659 CCCAACCACACCGAACAGATA 59.997 52.381 0.00 0.00 0.00 1.98
183 184 2.551287 CCCAACCACACCGAACAGATAA 60.551 50.000 0.00 0.00 0.00 1.75
184 185 3.142951 CCAACCACACCGAACAGATAAA 58.857 45.455 0.00 0.00 0.00 1.40
185 186 3.566322 CCAACCACACCGAACAGATAAAA 59.434 43.478 0.00 0.00 0.00 1.52
186 187 4.320202 CCAACCACACCGAACAGATAAAAG 60.320 45.833 0.00 0.00 0.00 2.27
187 188 3.408634 ACCACACCGAACAGATAAAAGG 58.591 45.455 0.00 0.00 0.00 3.11
188 189 3.071892 ACCACACCGAACAGATAAAAGGA 59.928 43.478 0.00 0.00 0.00 3.36
189 190 4.069304 CCACACCGAACAGATAAAAGGAA 58.931 43.478 0.00 0.00 0.00 3.36
190 191 4.517453 CCACACCGAACAGATAAAAGGAAA 59.483 41.667 0.00 0.00 0.00 3.13
191 192 5.334879 CCACACCGAACAGATAAAAGGAAAG 60.335 44.000 0.00 0.00 0.00 2.62
192 193 4.760204 ACACCGAACAGATAAAAGGAAAGG 59.240 41.667 0.00 0.00 0.00 3.11
193 194 5.001232 CACCGAACAGATAAAAGGAAAGGA 58.999 41.667 0.00 0.00 0.00 3.36
194 195 5.472137 CACCGAACAGATAAAAGGAAAGGAA 59.528 40.000 0.00 0.00 0.00 3.36
195 196 6.016610 CACCGAACAGATAAAAGGAAAGGAAA 60.017 38.462 0.00 0.00 0.00 3.13
196 197 6.548251 ACCGAACAGATAAAAGGAAAGGAAAA 59.452 34.615 0.00 0.00 0.00 2.29
197 198 7.068962 ACCGAACAGATAAAAGGAAAGGAAAAA 59.931 33.333 0.00 0.00 0.00 1.94
217 218 6.635030 AAAAAGAAGAACTAGAACGCCATT 57.365 33.333 0.00 0.00 0.00 3.16
218 219 5.864628 AAAGAAGAACTAGAACGCCATTC 57.135 39.130 0.00 0.00 37.62 2.67
235 236 2.279120 CGATCCTCTGTCGCTGCC 60.279 66.667 0.00 0.00 31.85 4.85
279 280 1.078143 GTGGCCGGAGATGAAGCTT 60.078 57.895 5.05 0.00 0.00 3.74
615 1082 2.876879 CTCGTTGACGCGCCAAACA 61.877 57.895 10.09 0.00 39.60 2.83
617 1084 2.720750 GTTGACGCGCCAAACACG 60.721 61.111 10.09 0.00 0.00 4.49
660 1157 0.457166 CGGCGTTACACGGAGATTCA 60.457 55.000 0.00 0.00 42.82 2.57
887 1456 2.359107 CTGTGATGGCGCCTGTGT 60.359 61.111 29.70 11.12 0.00 3.72
889 1458 1.518056 CTGTGATGGCGCCTGTGTTT 61.518 55.000 29.70 5.09 0.00 2.83
890 1459 1.081242 GTGATGGCGCCTGTGTTTG 60.081 57.895 29.70 0.00 0.00 2.93
930 1512 1.061570 GAAGCTCGCCGATTTGCTG 59.938 57.895 0.00 0.00 35.79 4.41
1069 1651 2.168521 CAGGTGAAGATATGGGTGTCGT 59.831 50.000 0.00 0.00 0.00 4.34
1095 1685 0.592148 GGGAGCTGTCCTACGATACG 59.408 60.000 0.00 0.00 43.36 3.06
1125 2961 4.464244 TGTTTTGACAAGTTCATCCACCAA 59.536 37.500 0.00 0.00 32.84 3.67
1137 2973 2.819595 CACCAACTCGGCGATGGG 60.820 66.667 27.67 22.24 39.73 4.00
1161 3000 1.144276 TCGTGACGGTGGCTTCAAA 59.856 52.632 4.70 0.00 0.00 2.69
1210 3053 3.226429 AAGACGCTTGGAGCTCGCA 62.226 57.895 7.83 4.12 39.60 5.10
1377 3223 1.290009 GGCACACCTTGTTGGCATC 59.710 57.895 0.00 0.00 40.22 3.91
1431 3283 2.483491 GCTGGAAGAAGAGAACAAGCAG 59.517 50.000 0.00 0.00 34.07 4.24
1437 3289 2.072298 GAAGAGAACAAGCAGCATCGT 58.928 47.619 0.00 0.00 0.00 3.73
1438 3290 1.719600 AGAGAACAAGCAGCATCGTC 58.280 50.000 0.00 0.00 0.00 4.20
1440 3292 0.319900 AGAACAAGCAGCATCGTCGT 60.320 50.000 0.00 0.00 0.00 4.34
1477 3329 0.466739 GTTCGGTGGGTTGGGAAAGT 60.467 55.000 0.00 0.00 0.00 2.66
1524 3376 3.681417 GCAAGATTCAAGGGCATTTTGAC 59.319 43.478 0.00 0.00 34.50 3.18
1799 6324 0.968405 ATGAACACCATTGCACCACC 59.032 50.000 0.00 0.00 29.34 4.61
1899 7238 6.132791 TCTATATCCTGATCGATTTACGCC 57.867 41.667 0.00 0.00 42.26 5.68
1927 7272 6.491383 ACTCCACTGTCTTAGGTATCTTGTA 58.509 40.000 0.00 0.00 0.00 2.41
1993 7338 6.205464 TCAACTGTGCTTTTCCAGAGAATAAG 59.795 38.462 0.00 0.00 32.93 1.73
2162 7507 1.947013 CGCTGCCCTGATATGCTTG 59.053 57.895 0.00 0.00 0.00 4.01
2381 7726 2.421388 CCACCAAACCTCAAGACTGTCA 60.421 50.000 10.88 0.00 0.00 3.58
2623 7968 9.932207 ATGCTTGAACTTATCATTTCAAAATCA 57.068 25.926 0.00 0.00 40.36 2.57
2650 7995 6.738114 TGAAGAAAATTTCATCACTGTGGTC 58.262 36.000 9.27 0.00 32.99 4.02
2659 8004 2.591715 ACTGTGGTCAACGGCAGC 60.592 61.111 0.00 0.00 38.92 5.25
2958 8303 1.112113 TCGGAGCTACCATCTGGAAC 58.888 55.000 2.55 0.00 38.90 3.62
3050 8395 7.801716 ATTGTTCAGCTCACTAAACTACAAA 57.198 32.000 0.00 0.00 0.00 2.83
3055 8400 7.658179 TCAGCTCACTAAACTACAAAATCTG 57.342 36.000 0.00 0.00 0.00 2.90
3082 8427 2.224185 TGAAAGTGTACATCTGTGGCGT 60.224 45.455 0.00 0.00 0.00 5.68
3083 8428 1.795768 AAGTGTACATCTGTGGCGTG 58.204 50.000 0.00 0.00 0.00 5.34
3134 8491 7.610305 GGAACATAACAAACTTAAGGGAGATCA 59.390 37.037 7.53 0.00 0.00 2.92
3144 8504 3.922171 AAGGGAGATCACAGGCTTTAG 57.078 47.619 0.00 0.00 0.00 1.85
3229 8589 2.435805 CCATGTATGGCTCAGTAGGTGT 59.564 50.000 0.00 0.00 41.75 4.16
3511 8883 5.546499 TGTAATAACAGAGGAGGTTCTTGGT 59.454 40.000 0.00 0.00 0.00 3.67
3521 8893 4.470304 AGGAGGTTCTTGGTATACTTGGAC 59.530 45.833 2.25 0.00 0.00 4.02
3615 12770 3.264450 AGAGGATTCCGATGTTTGAAGGT 59.736 43.478 0.00 0.00 0.00 3.50
3621 12776 1.196808 CCGATGTTTGAAGGTGTTCCG 59.803 52.381 0.00 0.00 39.05 4.30
3626 12781 5.349270 CGATGTTTGAAGGTGTTCCGTTATA 59.651 40.000 0.00 0.00 39.05 0.98
3689 12844 2.507992 CACTGCCGAAGCTCGAGG 60.508 66.667 15.58 0.00 43.74 4.63
3764 12919 2.173569 GGTCTTGAGCACCTCCCATATT 59.826 50.000 0.00 0.00 0.00 1.28
3777 12932 4.353737 CTCCCATATTTGAAACATGTGCG 58.646 43.478 0.00 0.00 0.00 5.34
3782 12937 5.863397 CCATATTTGAAACATGTGCGAGTTT 59.137 36.000 0.00 0.00 40.38 2.66
3823 12978 2.686915 CACATCTCCTGAATTTGAGGCC 59.313 50.000 0.00 0.00 0.00 5.19
4030 16130 2.561419 TCTGTAGGGAAACTGTTCTCCG 59.439 50.000 12.44 3.31 34.42 4.63
4069 16169 1.937546 CTCGGCTGCAATGGTTTCCC 61.938 60.000 0.50 0.00 0.00 3.97
4079 16179 2.281276 GGTTTCCCGAACGGCTGT 60.281 61.111 7.80 0.00 39.22 4.40
4081 16181 1.017701 GGTTTCCCGAACGGCTGTAG 61.018 60.000 7.80 0.00 39.22 2.74
4142 16242 7.234577 TGGCCTACAGTTTCCTTTTGATTTATT 59.765 33.333 3.32 0.00 0.00 1.40
4177 16277 4.232221 GCTTTGCGTACTACTGTCACTAA 58.768 43.478 0.00 0.00 0.00 2.24
4236 16336 0.903454 ACCAGGTAAGTAGTGCGCCT 60.903 55.000 4.18 3.99 0.00 5.52
4240 16340 2.623889 CAGGTAAGTAGTGCGCCTCTAT 59.376 50.000 4.18 0.00 0.00 1.98
4284 16384 0.735978 CTCGTGCGCCATTAGTGTGA 60.736 55.000 4.18 0.00 0.00 3.58
4700 16809 4.521130 TGAGCAAGACTTCGACAAGTAT 57.479 40.909 0.00 0.00 43.37 2.12
4713 16822 1.153429 AAGTATGGCGACCCGAAGC 60.153 57.895 0.00 0.00 0.00 3.86
4719 16828 2.791927 GCGACCCGAAGCCAAATC 59.208 61.111 0.00 0.00 0.00 2.17
4720 16829 2.761195 GCGACCCGAAGCCAAATCC 61.761 63.158 0.00 0.00 0.00 3.01
4721 16830 1.376683 CGACCCGAAGCCAAATCCA 60.377 57.895 0.00 0.00 0.00 3.41
4722 16831 0.958382 CGACCCGAAGCCAAATCCAA 60.958 55.000 0.00 0.00 0.00 3.53
4723 16832 0.811281 GACCCGAAGCCAAATCCAAG 59.189 55.000 0.00 0.00 0.00 3.61
4724 16833 0.404040 ACCCGAAGCCAAATCCAAGA 59.596 50.000 0.00 0.00 0.00 3.02
4725 16834 0.811281 CCCGAAGCCAAATCCAAGAC 59.189 55.000 0.00 0.00 0.00 3.01
4726 16835 0.811281 CCGAAGCCAAATCCAAGACC 59.189 55.000 0.00 0.00 0.00 3.85
4727 16836 0.447801 CGAAGCCAAATCCAAGACCG 59.552 55.000 0.00 0.00 0.00 4.79
4728 16837 0.171231 GAAGCCAAATCCAAGACCGC 59.829 55.000 0.00 0.00 0.00 5.68
4729 16838 1.586154 AAGCCAAATCCAAGACCGCG 61.586 55.000 0.00 0.00 0.00 6.46
4730 16839 3.051392 GCCAAATCCAAGACCGCGG 62.051 63.158 26.86 26.86 0.00 6.46
4731 16840 2.406616 CCAAATCCAAGACCGCGGG 61.407 63.158 31.76 11.50 0.00 6.13
4732 16841 2.750237 AAATCCAAGACCGCGGGC 60.750 61.111 31.76 30.01 0.00 6.13
4750 16859 2.325166 GCAAACGTCACCGCGAAA 59.675 55.556 8.23 0.00 37.70 3.46
4751 16860 1.297745 GCAAACGTCACCGCGAAAA 60.298 52.632 8.23 0.00 37.70 2.29
4752 16861 0.862283 GCAAACGTCACCGCGAAAAA 60.862 50.000 8.23 0.00 37.70 1.94
4753 16862 1.749153 CAAACGTCACCGCGAAAAAT 58.251 45.000 8.23 0.00 37.70 1.82
4754 16863 1.446465 CAAACGTCACCGCGAAAAATG 59.554 47.619 8.23 0.00 37.70 2.32
4755 16864 0.938713 AACGTCACCGCGAAAAATGA 59.061 45.000 8.23 0.00 37.70 2.57
4756 16865 0.511221 ACGTCACCGCGAAAAATGAG 59.489 50.000 8.23 0.00 37.70 2.90
4757 16866 0.789383 CGTCACCGCGAAAAATGAGC 60.789 55.000 8.23 0.00 0.00 4.26
4758 16867 0.454452 GTCACCGCGAAAAATGAGCC 60.454 55.000 8.23 0.00 0.00 4.70
4759 16868 0.886938 TCACCGCGAAAAATGAGCCA 60.887 50.000 8.23 0.00 0.00 4.75
4760 16869 0.171007 CACCGCGAAAAATGAGCCAT 59.829 50.000 8.23 0.00 0.00 4.40
4761 16870 0.171007 ACCGCGAAAAATGAGCCATG 59.829 50.000 8.23 0.00 0.00 3.66
4762 16871 0.526096 CCGCGAAAAATGAGCCATGG 60.526 55.000 8.23 7.63 0.00 3.66
4763 16872 0.526096 CGCGAAAAATGAGCCATGGG 60.526 55.000 15.13 0.00 0.00 4.00
4764 16873 0.532115 GCGAAAAATGAGCCATGGGT 59.468 50.000 18.33 18.33 0.00 4.51
4765 16874 1.748493 GCGAAAAATGAGCCATGGGTA 59.252 47.619 18.30 6.00 0.00 3.69
4766 16875 2.479560 GCGAAAAATGAGCCATGGGTAC 60.480 50.000 18.30 11.16 0.00 3.34
4767 16876 3.016736 CGAAAAATGAGCCATGGGTACT 58.983 45.455 18.30 2.67 0.00 2.73
4768 16877 3.181497 CGAAAAATGAGCCATGGGTACTG 60.181 47.826 18.30 0.00 0.00 2.74
4769 16878 2.442236 AAATGAGCCATGGGTACTGG 57.558 50.000 18.30 0.00 36.81 4.00
4774 16883 4.986467 CCATGGGTACTGGCTTCC 57.014 61.111 2.85 0.00 0.00 3.46
4775 16884 1.227383 CCATGGGTACTGGCTTCCC 59.773 63.158 2.85 0.00 41.41 3.97
4777 16886 4.341199 TGGGTACTGGCTTCCCAA 57.659 55.556 0.00 0.00 46.78 4.12
4778 16887 2.074967 TGGGTACTGGCTTCCCAAG 58.925 57.895 0.00 0.00 46.78 3.61
4779 16888 0.770557 TGGGTACTGGCTTCCCAAGT 60.771 55.000 0.00 0.00 46.78 3.16
4780 16889 0.322546 GGGTACTGGCTTCCCAAGTG 60.323 60.000 0.00 0.00 41.58 3.16
4781 16890 0.690762 GGTACTGGCTTCCCAAGTGA 59.309 55.000 0.00 0.00 41.58 3.41
4782 16891 1.073284 GGTACTGGCTTCCCAAGTGAA 59.927 52.381 0.00 0.00 41.58 3.18
4783 16892 2.152016 GTACTGGCTTCCCAAGTGAAC 58.848 52.381 0.00 0.00 41.58 3.18
4784 16893 0.178990 ACTGGCTTCCCAAGTGAACC 60.179 55.000 0.00 0.00 41.58 3.62
4785 16894 0.178992 CTGGCTTCCCAAGTGAACCA 60.179 55.000 0.00 0.00 41.58 3.67
4786 16895 0.260230 TGGCTTCCCAAGTGAACCAA 59.740 50.000 0.00 0.00 38.46 3.67
4787 16896 1.133199 TGGCTTCCCAAGTGAACCAAT 60.133 47.619 0.00 0.00 38.46 3.16
4788 16897 1.273327 GGCTTCCCAAGTGAACCAATG 59.727 52.381 0.00 0.00 0.00 2.82
4789 16898 1.963515 GCTTCCCAAGTGAACCAATGT 59.036 47.619 0.00 0.00 0.00 2.71
4790 16899 2.365293 GCTTCCCAAGTGAACCAATGTT 59.635 45.455 0.00 0.00 37.42 2.71
4791 16900 3.181466 GCTTCCCAAGTGAACCAATGTTT 60.181 43.478 0.00 0.00 33.97 2.83
4792 16901 4.620982 CTTCCCAAGTGAACCAATGTTTC 58.379 43.478 0.00 0.00 33.97 2.78
4793 16902 3.909732 TCCCAAGTGAACCAATGTTTCT 58.090 40.909 0.00 0.00 33.97 2.52
4794 16903 4.285863 TCCCAAGTGAACCAATGTTTCTT 58.714 39.130 0.00 0.00 33.97 2.52
4795 16904 4.340950 TCCCAAGTGAACCAATGTTTCTTC 59.659 41.667 0.00 0.00 33.97 2.87
4796 16905 4.099266 CCCAAGTGAACCAATGTTTCTTCA 59.901 41.667 0.00 0.00 33.97 3.02
4797 16906 5.221501 CCCAAGTGAACCAATGTTTCTTCAT 60.222 40.000 0.00 0.00 33.97 2.57
4798 16907 6.282930 CCAAGTGAACCAATGTTTCTTCATT 58.717 36.000 0.00 0.00 38.38 2.57
4799 16908 7.432869 CCAAGTGAACCAATGTTTCTTCATTA 58.567 34.615 0.00 0.00 36.44 1.90
4800 16909 7.382218 CCAAGTGAACCAATGTTTCTTCATTAC 59.618 37.037 0.00 0.00 36.44 1.89
4801 16910 6.981722 AGTGAACCAATGTTTCTTCATTACC 58.018 36.000 0.00 0.00 36.44 2.85
4802 16911 5.856455 GTGAACCAATGTTTCTTCATTACCG 59.144 40.000 0.00 0.00 36.44 4.02
4803 16912 5.765677 TGAACCAATGTTTCTTCATTACCGA 59.234 36.000 0.00 0.00 36.44 4.69
4804 16913 5.622770 ACCAATGTTTCTTCATTACCGAC 57.377 39.130 0.00 0.00 36.44 4.79
4805 16914 4.457949 ACCAATGTTTCTTCATTACCGACC 59.542 41.667 0.00 0.00 36.44 4.79
4806 16915 4.142469 CCAATGTTTCTTCATTACCGACCC 60.142 45.833 0.00 0.00 36.44 4.46
4807 16916 2.690786 TGTTTCTTCATTACCGACCCG 58.309 47.619 0.00 0.00 0.00 5.28
4808 16917 1.395954 GTTTCTTCATTACCGACCCGC 59.604 52.381 0.00 0.00 0.00 6.13
4809 16918 0.108041 TTCTTCATTACCGACCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
4810 16919 1.219664 CTTCATTACCGACCCGCCA 59.780 57.895 0.00 0.00 0.00 5.69
4811 16920 0.391927 CTTCATTACCGACCCGCCAA 60.392 55.000 0.00 0.00 0.00 4.52
4812 16921 0.036448 TTCATTACCGACCCGCCAAA 59.964 50.000 0.00 0.00 0.00 3.28
4813 16922 0.391927 TCATTACCGACCCGCCAAAG 60.392 55.000 0.00 0.00 0.00 2.77
4814 16923 1.747745 ATTACCGACCCGCCAAAGC 60.748 57.895 0.00 0.00 0.00 3.51
4815 16924 3.905437 TTACCGACCCGCCAAAGCC 62.905 63.158 0.00 0.00 34.57 4.35
4819 16928 4.660938 GACCCGCCAAAGCCCAGT 62.661 66.667 0.00 0.00 34.57 4.00
4820 16929 4.660938 ACCCGCCAAAGCCCAGTC 62.661 66.667 0.00 0.00 34.57 3.51
4823 16932 3.726517 CGCCAAAGCCCAGTCGTG 61.727 66.667 0.00 0.00 34.57 4.35
4824 16933 2.594592 GCCAAAGCCCAGTCGTGT 60.595 61.111 0.00 0.00 0.00 4.49
4825 16934 2.193536 GCCAAAGCCCAGTCGTGTT 61.194 57.895 0.00 0.00 0.00 3.32
4826 16935 1.654220 CCAAAGCCCAGTCGTGTTG 59.346 57.895 0.00 0.00 0.00 3.33
4827 16936 1.101049 CCAAAGCCCAGTCGTGTTGT 61.101 55.000 0.00 0.00 0.00 3.32
4828 16937 0.307760 CAAAGCCCAGTCGTGTTGTC 59.692 55.000 0.00 0.00 0.00 3.18
4829 16938 1.157870 AAAGCCCAGTCGTGTTGTCG 61.158 55.000 0.00 0.00 0.00 4.35
4830 16939 2.279918 GCCCAGTCGTGTTGTCGT 60.280 61.111 0.00 0.00 0.00 4.34
4831 16940 2.594962 GCCCAGTCGTGTTGTCGTG 61.595 63.158 0.00 0.00 0.00 4.35
4832 16941 1.066752 CCCAGTCGTGTTGTCGTGA 59.933 57.895 0.00 0.00 0.00 4.35
4833 16942 0.939577 CCCAGTCGTGTTGTCGTGAG 60.940 60.000 0.00 0.00 0.00 3.51
4834 16943 0.939577 CCAGTCGTGTTGTCGTGAGG 60.940 60.000 0.00 0.00 0.00 3.86
4835 16944 0.030235 CAGTCGTGTTGTCGTGAGGA 59.970 55.000 0.00 0.00 0.00 3.71
4836 16945 0.311165 AGTCGTGTTGTCGTGAGGAG 59.689 55.000 0.00 0.00 0.00 3.69
4837 16946 0.309922 GTCGTGTTGTCGTGAGGAGA 59.690 55.000 0.00 0.00 0.00 3.71
4838 16947 0.591659 TCGTGTTGTCGTGAGGAGAG 59.408 55.000 0.00 0.00 0.00 3.20
4839 16948 0.387367 CGTGTTGTCGTGAGGAGAGG 60.387 60.000 0.00 0.00 0.00 3.69
4840 16949 0.667792 GTGTTGTCGTGAGGAGAGGC 60.668 60.000 0.00 0.00 0.00 4.70
4841 16950 1.112916 TGTTGTCGTGAGGAGAGGCA 61.113 55.000 0.00 0.00 0.00 4.75
4842 16951 0.033504 GTTGTCGTGAGGAGAGGCAA 59.966 55.000 0.00 0.00 0.00 4.52
4843 16952 0.756294 TTGTCGTGAGGAGAGGCAAA 59.244 50.000 0.00 0.00 0.00 3.68
4844 16953 0.756294 TGTCGTGAGGAGAGGCAAAA 59.244 50.000 0.00 0.00 0.00 2.44
4845 16954 1.270305 TGTCGTGAGGAGAGGCAAAAG 60.270 52.381 0.00 0.00 0.00 2.27
4846 16955 0.321671 TCGTGAGGAGAGGCAAAAGG 59.678 55.000 0.00 0.00 0.00 3.11
4847 16956 0.321671 CGTGAGGAGAGGCAAAAGGA 59.678 55.000 0.00 0.00 0.00 3.36
4848 16957 1.270839 CGTGAGGAGAGGCAAAAGGAA 60.271 52.381 0.00 0.00 0.00 3.36
4849 16958 2.431454 GTGAGGAGAGGCAAAAGGAAG 58.569 52.381 0.00 0.00 0.00 3.46
4850 16959 2.039084 GTGAGGAGAGGCAAAAGGAAGA 59.961 50.000 0.00 0.00 0.00 2.87
4851 16960 2.915604 TGAGGAGAGGCAAAAGGAAGAT 59.084 45.455 0.00 0.00 0.00 2.40
4852 16961 3.054802 TGAGGAGAGGCAAAAGGAAGATC 60.055 47.826 0.00 0.00 0.00 2.75
4853 16962 2.915604 AGGAGAGGCAAAAGGAAGATCA 59.084 45.455 0.00 0.00 0.00 2.92
4854 16963 3.526841 AGGAGAGGCAAAAGGAAGATCAT 59.473 43.478 0.00 0.00 0.00 2.45
4855 16964 3.882288 GGAGAGGCAAAAGGAAGATCATC 59.118 47.826 0.00 0.00 0.00 2.92
4856 16965 3.539604 AGAGGCAAAAGGAAGATCATCG 58.460 45.455 0.00 0.00 0.00 3.84
4857 16966 2.615912 GAGGCAAAAGGAAGATCATCGG 59.384 50.000 0.00 0.00 0.00 4.18
4858 16967 2.239654 AGGCAAAAGGAAGATCATCGGA 59.760 45.455 0.00 0.00 0.00 4.55
4859 16968 3.016736 GGCAAAAGGAAGATCATCGGAA 58.983 45.455 0.00 0.00 0.00 4.30
4860 16969 3.633986 GGCAAAAGGAAGATCATCGGAAT 59.366 43.478 0.00 0.00 0.00 3.01
4861 16970 4.498682 GGCAAAAGGAAGATCATCGGAATG 60.499 45.833 0.00 0.00 0.00 2.67
4862 16971 4.498682 GCAAAAGGAAGATCATCGGAATGG 60.499 45.833 0.00 0.00 33.42 3.16
4863 16972 4.778213 AAAGGAAGATCATCGGAATGGA 57.222 40.909 0.00 0.00 33.42 3.41
4864 16973 4.989875 AAGGAAGATCATCGGAATGGAT 57.010 40.909 0.00 0.00 33.42 3.41
4865 16974 4.283363 AGGAAGATCATCGGAATGGATG 57.717 45.455 0.00 0.00 44.10 3.51
4866 16975 3.008813 AGGAAGATCATCGGAATGGATGG 59.991 47.826 0.00 0.00 43.18 3.51
4867 16976 3.008375 GGAAGATCATCGGAATGGATGGA 59.992 47.826 0.00 0.00 43.18 3.41
4868 16977 3.977134 AGATCATCGGAATGGATGGAG 57.023 47.619 0.00 0.00 43.18 3.86
4869 16978 3.246301 AGATCATCGGAATGGATGGAGT 58.754 45.455 0.00 0.00 43.18 3.85
4870 16979 4.420206 AGATCATCGGAATGGATGGAGTA 58.580 43.478 0.00 0.00 43.18 2.59
4871 16980 4.465660 AGATCATCGGAATGGATGGAGTAG 59.534 45.833 0.00 0.00 43.18 2.57
4872 16981 2.300152 TCATCGGAATGGATGGAGTAGC 59.700 50.000 3.03 0.00 43.18 3.58
4873 16982 1.048601 TCGGAATGGATGGAGTAGCC 58.951 55.000 0.00 0.00 34.64 3.93
4883 16992 2.408271 TGGAGTAGCCAATGAGCAAG 57.592 50.000 0.00 0.00 45.87 4.01
4884 16993 1.908619 TGGAGTAGCCAATGAGCAAGA 59.091 47.619 0.00 0.00 45.87 3.02
4885 16994 2.284190 GGAGTAGCCAATGAGCAAGAC 58.716 52.381 0.00 0.00 36.34 3.01
4886 16995 2.093235 GGAGTAGCCAATGAGCAAGACT 60.093 50.000 0.00 0.00 36.34 3.24
4887 16996 3.604582 GAGTAGCCAATGAGCAAGACTT 58.395 45.455 0.00 0.00 34.23 3.01
4888 16997 3.604582 AGTAGCCAATGAGCAAGACTTC 58.395 45.455 0.00 0.00 34.23 3.01
4889 16998 1.446907 AGCCAATGAGCAAGACTTCG 58.553 50.000 0.00 0.00 34.23 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.827411 GCTTGGACTAATTGTTTTTCTTACTAG 57.173 33.333 0.00 0.00 0.00 2.57
8 9 9.569122 AGCTTGGACTAATTGTTTTTCTTACTA 57.431 29.630 0.00 0.00 0.00 1.82
9 10 8.465273 AGCTTGGACTAATTGTTTTTCTTACT 57.535 30.769 0.00 0.00 0.00 2.24
10 11 9.529325 AAAGCTTGGACTAATTGTTTTTCTTAC 57.471 29.630 0.00 0.00 0.00 2.34
11 12 9.744468 GAAAGCTTGGACTAATTGTTTTTCTTA 57.256 29.630 0.00 0.00 0.00 2.10
12 13 8.478066 AGAAAGCTTGGACTAATTGTTTTTCTT 58.522 29.630 0.00 0.00 29.66 2.52
13 14 7.922811 CAGAAAGCTTGGACTAATTGTTTTTCT 59.077 33.333 0.00 0.00 33.00 2.52
14 15 7.306807 GCAGAAAGCTTGGACTAATTGTTTTTC 60.307 37.037 0.00 0.00 41.15 2.29
15 16 6.479990 GCAGAAAGCTTGGACTAATTGTTTTT 59.520 34.615 0.00 0.00 41.15 1.94
16 17 5.985530 GCAGAAAGCTTGGACTAATTGTTTT 59.014 36.000 0.00 0.00 41.15 2.43
17 18 5.068987 TGCAGAAAGCTTGGACTAATTGTTT 59.931 36.000 0.00 0.00 45.94 2.83
18 19 4.584325 TGCAGAAAGCTTGGACTAATTGTT 59.416 37.500 0.00 0.00 45.94 2.83
19 20 4.144297 TGCAGAAAGCTTGGACTAATTGT 58.856 39.130 0.00 0.00 45.94 2.71
20 21 4.771590 TGCAGAAAGCTTGGACTAATTG 57.228 40.909 0.00 0.00 45.94 2.32
21 22 4.400567 GGATGCAGAAAGCTTGGACTAATT 59.599 41.667 0.00 0.00 45.94 1.40
22 23 3.950395 GGATGCAGAAAGCTTGGACTAAT 59.050 43.478 0.00 0.00 45.94 1.73
23 24 3.244875 TGGATGCAGAAAGCTTGGACTAA 60.245 43.478 0.00 0.00 45.94 2.24
24 25 2.305635 TGGATGCAGAAAGCTTGGACTA 59.694 45.455 0.00 0.00 45.94 2.59
25 26 1.074405 TGGATGCAGAAAGCTTGGACT 59.926 47.619 0.00 0.00 45.94 3.85
26 27 1.538047 TGGATGCAGAAAGCTTGGAC 58.462 50.000 0.00 0.00 45.94 4.02
27 28 2.165167 CTTGGATGCAGAAAGCTTGGA 58.835 47.619 0.00 0.00 45.94 3.53
28 29 1.403780 GCTTGGATGCAGAAAGCTTGG 60.404 52.381 18.53 0.00 45.94 3.61
29 30 1.403780 GGCTTGGATGCAGAAAGCTTG 60.404 52.381 22.57 0.00 44.54 4.01
30 31 0.893447 GGCTTGGATGCAGAAAGCTT 59.107 50.000 22.57 0.00 44.54 3.74
31 32 0.039326 AGGCTTGGATGCAGAAAGCT 59.961 50.000 22.57 11.37 44.54 3.74
32 33 0.893447 AAGGCTTGGATGCAGAAAGC 59.107 50.000 17.89 17.89 44.43 3.51
33 34 2.163815 CTGAAGGCTTGGATGCAGAAAG 59.836 50.000 3.46 0.00 34.04 2.62
34 35 2.165167 CTGAAGGCTTGGATGCAGAAA 58.835 47.619 3.46 0.00 34.04 2.52
35 36 1.830279 CTGAAGGCTTGGATGCAGAA 58.170 50.000 3.46 0.00 34.04 3.02
36 37 0.679002 GCTGAAGGCTTGGATGCAGA 60.679 55.000 14.90 0.00 38.06 4.26
37 38 1.807886 GCTGAAGGCTTGGATGCAG 59.192 57.895 3.46 6.50 38.06 4.41
38 39 4.007457 GCTGAAGGCTTGGATGCA 57.993 55.556 3.46 0.00 38.06 3.96
47 48 2.149578 CTGCCACATATAGCTGAAGGC 58.850 52.381 0.00 1.80 39.55 4.35
48 49 2.149578 GCTGCCACATATAGCTGAAGG 58.850 52.381 0.00 0.00 34.70 3.46
49 50 2.149578 GGCTGCCACATATAGCTGAAG 58.850 52.381 15.17 0.00 37.58 3.02
50 51 1.490069 TGGCTGCCACATATAGCTGAA 59.510 47.619 19.30 0.00 37.58 3.02
51 52 1.130777 TGGCTGCCACATATAGCTGA 58.869 50.000 19.30 0.00 37.58 4.26
52 53 3.711937 TGGCTGCCACATATAGCTG 57.288 52.632 19.30 0.00 37.58 4.24
62 63 5.257262 TGTTTACTTATTATGTGGCTGCCA 58.743 37.500 19.30 19.30 0.00 4.92
63 64 5.828299 TGTTTACTTATTATGTGGCTGCC 57.172 39.130 12.87 12.87 0.00 4.85
64 65 8.527567 TTTTTGTTTACTTATTATGTGGCTGC 57.472 30.769 0.00 0.00 0.00 5.25
87 88 9.927668 CAACTTTGACCCATATAATCTTGTTTT 57.072 29.630 0.00 0.00 0.00 2.43
88 89 8.034804 GCAACTTTGACCCATATAATCTTGTTT 58.965 33.333 0.00 0.00 0.00 2.83
89 90 7.363793 GGCAACTTTGACCCATATAATCTTGTT 60.364 37.037 0.00 0.00 0.00 2.83
90 91 6.096846 GGCAACTTTGACCCATATAATCTTGT 59.903 38.462 0.00 0.00 0.00 3.16
91 92 6.507023 GGCAACTTTGACCCATATAATCTTG 58.493 40.000 0.00 0.00 0.00 3.02
92 93 5.299279 CGGCAACTTTGACCCATATAATCTT 59.701 40.000 0.00 0.00 30.46 2.40
93 94 4.821805 CGGCAACTTTGACCCATATAATCT 59.178 41.667 0.00 0.00 30.46 2.40
94 95 4.819630 TCGGCAACTTTGACCCATATAATC 59.180 41.667 0.00 0.00 30.46 1.75
95 96 4.578928 GTCGGCAACTTTGACCCATATAAT 59.421 41.667 0.00 0.00 30.46 1.28
96 97 3.942748 GTCGGCAACTTTGACCCATATAA 59.057 43.478 0.00 0.00 30.46 0.98
97 98 3.537580 GTCGGCAACTTTGACCCATATA 58.462 45.455 0.00 0.00 30.46 0.86
98 99 2.365582 GTCGGCAACTTTGACCCATAT 58.634 47.619 0.00 0.00 30.46 1.78
99 100 1.612199 GGTCGGCAACTTTGACCCATA 60.612 52.381 0.00 0.00 45.14 2.74
100 101 0.893727 GGTCGGCAACTTTGACCCAT 60.894 55.000 0.00 0.00 45.14 4.00
101 102 1.527380 GGTCGGCAACTTTGACCCA 60.527 57.895 0.00 0.00 45.14 4.51
102 103 3.351450 GGTCGGCAACTTTGACCC 58.649 61.111 0.00 0.00 45.14 4.46
103 104 2.943653 CGGTCGGCAACTTTGACC 59.056 61.111 0.55 0.55 46.91 4.02
104 105 2.251371 GCGGTCGGCAACTTTGAC 59.749 61.111 0.00 0.00 42.87 3.18
114 115 3.976701 AAGGCTTGGATGCGGTCGG 62.977 63.158 0.00 0.00 0.00 4.79
115 116 2.436646 AAGGCTTGGATGCGGTCG 60.437 61.111 0.00 0.00 0.00 4.79
116 117 1.675641 ACAAGGCTTGGATGCGGTC 60.676 57.895 29.26 0.00 34.12 4.79
117 118 1.973281 CACAAGGCTTGGATGCGGT 60.973 57.895 29.26 5.32 34.12 5.68
118 119 2.879907 CACAAGGCTTGGATGCGG 59.120 61.111 29.26 9.09 34.12 5.69
119 120 2.180017 GCACAAGGCTTGGATGCG 59.820 61.111 29.26 13.77 40.25 4.73
128 129 2.427506 GCTACCCATATAGCACAAGGC 58.572 52.381 0.00 0.00 45.83 4.35
135 136 4.181578 CGTTATGTGGCTACCCATATAGC 58.818 47.826 0.00 0.00 43.40 2.97
136 137 4.181578 GCGTTATGTGGCTACCCATATAG 58.818 47.826 0.00 0.00 43.40 1.31
137 138 3.055675 GGCGTTATGTGGCTACCCATATA 60.056 47.826 0.00 0.00 44.51 0.86
138 139 2.290071 GGCGTTATGTGGCTACCCATAT 60.290 50.000 0.00 0.00 44.51 1.78
139 140 1.071071 GGCGTTATGTGGCTACCCATA 59.929 52.381 0.00 0.00 44.51 2.74
140 141 0.179029 GGCGTTATGTGGCTACCCAT 60.179 55.000 0.00 0.00 44.51 4.00
141 142 1.222387 GGCGTTATGTGGCTACCCA 59.778 57.895 0.00 0.00 39.32 4.51
142 143 1.885850 CGGCGTTATGTGGCTACCC 60.886 63.158 0.00 0.00 0.00 3.69
143 144 1.885850 CCGGCGTTATGTGGCTACC 60.886 63.158 6.01 0.00 0.00 3.18
144 145 2.531376 GCCGGCGTTATGTGGCTAC 61.531 63.158 12.58 0.00 44.16 3.58
145 146 2.202960 GCCGGCGTTATGTGGCTA 60.203 61.111 12.58 0.00 44.16 3.93
148 149 4.787286 TGGGCCGGCGTTATGTGG 62.787 66.667 22.54 0.00 0.00 4.17
149 150 2.748251 TTGGGCCGGCGTTATGTG 60.748 61.111 22.54 0.00 0.00 3.21
150 151 2.748647 GTTGGGCCGGCGTTATGT 60.749 61.111 22.54 0.00 0.00 2.29
151 152 3.514362 GGTTGGGCCGGCGTTATG 61.514 66.667 22.54 0.00 0.00 1.90
152 153 4.036430 TGGTTGGGCCGGCGTTAT 62.036 61.111 22.54 0.00 41.21 1.89
159 160 4.939368 TTCGGTGTGGTTGGGCCG 62.939 66.667 0.00 0.00 44.95 6.13
160 161 3.292159 GTTCGGTGTGGTTGGGCC 61.292 66.667 0.00 0.00 37.90 5.80
161 162 2.517402 TGTTCGGTGTGGTTGGGC 60.517 61.111 0.00 0.00 0.00 5.36
162 163 0.250727 ATCTGTTCGGTGTGGTTGGG 60.251 55.000 0.00 0.00 0.00 4.12
163 164 2.465860 TATCTGTTCGGTGTGGTTGG 57.534 50.000 0.00 0.00 0.00 3.77
164 165 4.320202 CCTTTTATCTGTTCGGTGTGGTTG 60.320 45.833 0.00 0.00 0.00 3.77
165 166 3.818773 CCTTTTATCTGTTCGGTGTGGTT 59.181 43.478 0.00 0.00 0.00 3.67
166 167 3.071892 TCCTTTTATCTGTTCGGTGTGGT 59.928 43.478 0.00 0.00 0.00 4.16
167 168 3.670625 TCCTTTTATCTGTTCGGTGTGG 58.329 45.455 0.00 0.00 0.00 4.17
168 169 5.334879 CCTTTCCTTTTATCTGTTCGGTGTG 60.335 44.000 0.00 0.00 0.00 3.82
169 170 4.760204 CCTTTCCTTTTATCTGTTCGGTGT 59.240 41.667 0.00 0.00 0.00 4.16
170 171 5.001232 TCCTTTCCTTTTATCTGTTCGGTG 58.999 41.667 0.00 0.00 0.00 4.94
171 172 5.237236 TCCTTTCCTTTTATCTGTTCGGT 57.763 39.130 0.00 0.00 0.00 4.69
172 173 6.569179 TTTCCTTTCCTTTTATCTGTTCGG 57.431 37.500 0.00 0.00 0.00 4.30
194 195 6.565999 CGAATGGCGTTCTAGTTCTTCTTTTT 60.566 38.462 16.81 0.00 34.56 1.94
195 196 5.107065 CGAATGGCGTTCTAGTTCTTCTTTT 60.107 40.000 16.81 0.00 34.56 2.27
196 197 4.389077 CGAATGGCGTTCTAGTTCTTCTTT 59.611 41.667 16.81 0.00 34.56 2.52
197 198 3.927142 CGAATGGCGTTCTAGTTCTTCTT 59.073 43.478 16.81 0.00 34.56 2.52
198 199 3.192844 TCGAATGGCGTTCTAGTTCTTCT 59.807 43.478 16.81 0.00 41.80 2.85
199 200 3.508762 TCGAATGGCGTTCTAGTTCTTC 58.491 45.455 16.81 0.00 41.80 2.87
200 201 3.587797 TCGAATGGCGTTCTAGTTCTT 57.412 42.857 16.81 0.00 41.80 2.52
201 202 3.491104 GGATCGAATGGCGTTCTAGTTCT 60.491 47.826 16.81 0.00 41.80 3.01
202 203 2.795470 GGATCGAATGGCGTTCTAGTTC 59.205 50.000 16.81 7.22 41.80 3.01
203 204 2.431057 AGGATCGAATGGCGTTCTAGTT 59.569 45.455 16.81 0.00 41.80 2.24
204 205 2.032620 AGGATCGAATGGCGTTCTAGT 58.967 47.619 16.81 3.23 41.80 2.57
205 206 2.294791 AGAGGATCGAATGGCGTTCTAG 59.705 50.000 16.81 3.21 42.67 2.43
206 207 2.034685 CAGAGGATCGAATGGCGTTCTA 59.965 50.000 16.81 7.00 42.67 2.10
207 208 1.115467 AGAGGATCGAATGGCGTTCT 58.885 50.000 16.81 0.00 42.67 3.01
208 209 1.212616 CAGAGGATCGAATGGCGTTC 58.787 55.000 9.44 9.44 42.67 3.95
209 210 0.537188 ACAGAGGATCGAATGGCGTT 59.463 50.000 0.00 0.00 42.67 4.84
210 211 0.103208 GACAGAGGATCGAATGGCGT 59.897 55.000 0.00 0.00 42.67 5.68
211 212 0.936764 CGACAGAGGATCGAATGGCG 60.937 60.000 3.90 3.90 42.25 5.69
212 213 1.218230 GCGACAGAGGATCGAATGGC 61.218 60.000 0.00 0.00 42.25 4.40
213 214 0.387202 AGCGACAGAGGATCGAATGG 59.613 55.000 0.00 0.00 42.25 3.16
214 215 1.485397 CAGCGACAGAGGATCGAATG 58.515 55.000 0.00 0.00 42.25 2.67
215 216 0.249238 GCAGCGACAGAGGATCGAAT 60.249 55.000 0.00 0.00 42.25 3.34
216 217 1.139734 GCAGCGACAGAGGATCGAA 59.860 57.895 0.00 0.00 42.25 3.71
217 218 2.775856 GGCAGCGACAGAGGATCGA 61.776 63.158 0.00 0.00 42.25 3.59
218 219 2.279120 GGCAGCGACAGAGGATCG 60.279 66.667 0.00 0.00 42.67 3.69
660 1157 1.204941 GCACAGAACTCATACCCGTCT 59.795 52.381 0.00 0.00 0.00 4.18
1015 1597 4.785511 TCTCTAGCTTGGTGTACTTCAC 57.214 45.455 0.00 0.00 45.47 3.18
1016 1598 5.105310 GGATTCTCTAGCTTGGTGTACTTCA 60.105 44.000 0.00 0.00 0.00 3.02
1095 1685 5.514274 TGAACTTGTCAAAACAATCCTCC 57.486 39.130 0.00 0.00 44.18 4.30
1137 2973 4.065281 CCACCGTCACGACTCCCC 62.065 72.222 0.00 0.00 0.00 4.81
1161 3000 1.606737 GCAGTCTTGCGGAAGAACTCT 60.607 52.381 21.63 11.49 40.00 3.24
1210 3053 0.397535 ATTTGGCTGGCGATCCCATT 60.398 50.000 3.70 0.00 44.33 3.16
1347 3193 1.518903 GGTGTGCCTCCTCAGCAAAC 61.519 60.000 0.00 0.00 45.94 2.93
1377 3223 0.248134 GATCGTCTCTTGGACCGTCG 60.248 60.000 0.00 0.00 41.64 5.12
1431 3283 1.693467 TAGACAACACACGACGATGC 58.307 50.000 0.00 0.00 0.00 3.91
1437 3289 3.135225 CCCAACAATAGACAACACACGA 58.865 45.455 0.00 0.00 0.00 4.35
1438 3290 2.875933 ACCCAACAATAGACAACACACG 59.124 45.455 0.00 0.00 0.00 4.49
1440 3292 3.562141 CGAACCCAACAATAGACAACACA 59.438 43.478 0.00 0.00 0.00 3.72
1477 3329 4.521130 AGACTTCATTCGCTAGTGTTGA 57.479 40.909 2.66 5.50 0.00 3.18
1524 3376 2.060326 CTGACACAAAAGCATGGCAG 57.940 50.000 0.00 0.00 45.25 4.85
1771 6296 3.615592 GCAATGGTGTTCATTCTGTGCAT 60.616 43.478 0.00 0.00 43.70 3.96
1799 6324 3.242518 CTTGCAATGACAAGCATCACTG 58.757 45.455 0.00 0.00 40.53 3.66
1886 7225 2.352519 GGAGTAGGGGCGTAAATCGATC 60.353 54.545 0.00 0.00 42.86 3.69
1889 7228 0.748450 TGGAGTAGGGGCGTAAATCG 59.252 55.000 0.00 0.00 43.12 3.34
1896 7235 1.258445 AAGACAGTGGAGTAGGGGCG 61.258 60.000 0.00 0.00 0.00 6.13
1899 7238 3.103080 ACCTAAGACAGTGGAGTAGGG 57.897 52.381 15.67 5.03 36.44 3.53
1940 7285 6.314896 GCTTTCCATGCTGATATAGACCATAC 59.685 42.308 0.00 0.00 0.00 2.39
1993 7338 9.974750 GTTGTAGTTATAATTCTGCTTGAAGAC 57.025 33.333 0.00 0.00 38.18 3.01
2381 7726 6.719370 TCAGGGAAATTACTTAAGTGCAACAT 59.281 34.615 18.56 0.00 41.43 2.71
2551 7896 1.837439 ACCTTCCCATCACAGCGAATA 59.163 47.619 0.00 0.00 0.00 1.75
2559 7904 2.438434 CCCGCACCTTCCCATCAC 60.438 66.667 0.00 0.00 0.00 3.06
2623 7968 8.206189 ACCACAGTGATGAAATTTTCTTCAATT 58.794 29.630 22.20 14.25 42.94 2.32
2659 8004 4.099266 TGAGAATTTTCCCACACAGTTTGG 59.901 41.667 0.00 0.00 0.00 3.28
2668 8013 7.454260 AATAGAACACTGAGAATTTTCCCAC 57.546 36.000 0.00 0.00 0.00 4.61
2874 8219 7.339466 ACAGGTTTTCCATACCTTTCATATCAC 59.661 37.037 0.00 0.00 43.45 3.06
2958 8303 6.380995 GTCTCTAGATCATGTAGCATCACAG 58.619 44.000 0.00 0.00 0.00 3.66
2995 8340 5.694006 CGGCAATTCCTTGATTTTTGTACAA 59.306 36.000 3.59 3.59 34.04 2.41
2996 8341 5.226396 CGGCAATTCCTTGATTTTTGTACA 58.774 37.500 0.00 0.00 34.04 2.90
3010 8355 0.179103 CAATTCTGGCCGGCAATTCC 60.179 55.000 30.85 11.16 0.00 3.01
3068 8413 2.024176 ATTCCACGCCACAGATGTAC 57.976 50.000 0.00 0.00 0.00 2.90
3069 8414 3.028130 TCTATTCCACGCCACAGATGTA 58.972 45.455 0.00 0.00 0.00 2.29
3074 8419 2.898729 ATCTCTATTCCACGCCACAG 57.101 50.000 0.00 0.00 0.00 3.66
3077 8422 2.673258 TGGTATCTCTATTCCACGCCA 58.327 47.619 0.00 0.00 28.33 5.69
3080 8425 4.486090 CCGATTGGTATCTCTATTCCACG 58.514 47.826 0.00 0.00 32.73 4.94
3082 8427 4.747583 TCCCGATTGGTATCTCTATTCCA 58.252 43.478 0.00 0.00 31.23 3.53
3083 8428 5.941555 ATCCCGATTGGTATCTCTATTCC 57.058 43.478 0.00 0.00 34.77 3.01
3112 8469 7.066284 CCTGTGATCTCCCTTAAGTTTGTTATG 59.934 40.741 0.97 0.00 0.00 1.90
3115 8472 5.316987 CCTGTGATCTCCCTTAAGTTTGTT 58.683 41.667 0.97 0.00 0.00 2.83
3134 8491 4.202441 CTCATGGTAATGCTAAAGCCTGT 58.798 43.478 0.00 0.00 41.18 4.00
3144 8504 4.572389 CACCTACTGAACTCATGGTAATGC 59.428 45.833 0.00 0.00 33.47 3.56
3190 8550 9.559732 CATACATGGAGTACCTTCAAATTGATA 57.440 33.333 0.00 0.00 35.05 2.15
3215 8575 2.597578 TCACTACACCTACTGAGCCA 57.402 50.000 0.00 0.00 0.00 4.75
3218 8578 6.375736 TGAGATTCTTCACTACACCTACTGAG 59.624 42.308 0.00 0.00 0.00 3.35
3223 8583 6.948886 ACTCTTGAGATTCTTCACTACACCTA 59.051 38.462 4.49 0.00 0.00 3.08
3229 8589 8.637196 TCTTGTACTCTTGAGATTCTTCACTA 57.363 34.615 4.49 0.00 0.00 2.74
3511 8883 1.134401 GCAGGCAGCTGTCCAAGTATA 60.134 52.381 23.46 0.00 41.15 1.47
3521 8893 2.089980 AGAAAGTAATGCAGGCAGCTG 58.910 47.619 10.11 10.11 45.94 4.24
3615 12770 5.826737 TCACCAAAAGGTTTATAACGGAACA 59.173 36.000 0.00 0.00 0.00 3.18
3646 12801 0.321653 CCTCAAACAGAAGGGTCCCG 60.322 60.000 0.99 0.00 0.00 5.14
3701 12856 1.336440 TGCCATTGACACAAAGAACCG 59.664 47.619 0.00 0.00 0.00 4.44
3734 12889 4.020543 AGGTGCTCAAGACCTAAGTAGAG 58.979 47.826 0.00 0.00 42.35 2.43
3764 12919 4.992688 AGAAAAACTCGCACATGTTTCAA 58.007 34.783 0.00 0.00 35.63 2.69
3777 12932 3.473625 TCCCGGTTCTGAAGAAAAACTC 58.526 45.455 0.00 0.00 35.58 3.01
3782 12937 1.613255 GGCATCCCGGTTCTGAAGAAA 60.613 52.381 0.00 0.00 35.58 2.52
4030 16130 3.545703 AGCCACCTGCAGTTATATTCAC 58.454 45.455 13.81 0.00 44.83 3.18
4069 16169 1.138883 TAGCAGCTACAGCCGTTCG 59.861 57.895 0.00 0.00 43.38 3.95
4142 16242 3.527533 ACGCAAAGCAAGGACGAATATA 58.472 40.909 0.00 0.00 0.00 0.86
4177 16277 9.041354 CAGTCTTATCTATAGCCCTTTTCCTAT 57.959 37.037 0.00 0.00 0.00 2.57
4198 16298 2.555199 GTGCGCCATTAGAATCAGTCT 58.445 47.619 4.18 0.00 40.71 3.24
4236 16336 6.460537 CCGGTGCGCCATTAGTATATAATAGA 60.461 42.308 18.18 0.00 34.09 1.98
4240 16340 3.258872 ACCGGTGCGCCATTAGTATATAA 59.741 43.478 18.18 0.00 34.09 0.98
4284 16384 1.165270 GGTGCGCCATTAGTGTCTTT 58.835 50.000 12.58 0.00 34.09 2.52
4577 16686 2.957402 AGAAGCATTGGTCCACTTGA 57.043 45.000 5.36 0.00 0.00 3.02
4713 16822 2.406616 CCCGCGGTCTTGGATTTGG 61.407 63.158 26.12 0.00 0.00 3.28
4714 16823 3.051392 GCCCGCGGTCTTGGATTTG 62.051 63.158 26.12 5.27 0.00 2.32
4715 16824 2.750237 GCCCGCGGTCTTGGATTT 60.750 61.111 26.12 0.00 0.00 2.17
4739 16848 0.454452 GGCTCATTTTTCGCGGTGAC 60.454 55.000 6.13 0.00 0.00 3.67
4740 16849 0.886938 TGGCTCATTTTTCGCGGTGA 60.887 50.000 6.13 2.66 0.00 4.02
4741 16850 0.171007 ATGGCTCATTTTTCGCGGTG 59.829 50.000 6.13 0.00 0.00 4.94
4742 16851 0.171007 CATGGCTCATTTTTCGCGGT 59.829 50.000 6.13 0.00 0.00 5.68
4743 16852 0.526096 CCATGGCTCATTTTTCGCGG 60.526 55.000 6.13 0.00 0.00 6.46
4744 16853 0.526096 CCCATGGCTCATTTTTCGCG 60.526 55.000 6.09 0.00 0.00 5.87
4745 16854 0.532115 ACCCATGGCTCATTTTTCGC 59.468 50.000 6.09 0.00 0.00 4.70
4746 16855 3.016736 AGTACCCATGGCTCATTTTTCG 58.983 45.455 6.09 0.00 0.00 3.46
4747 16856 3.131046 CCAGTACCCATGGCTCATTTTTC 59.869 47.826 6.09 0.00 0.00 2.29
4748 16857 3.099141 CCAGTACCCATGGCTCATTTTT 58.901 45.455 6.09 0.00 0.00 1.94
4749 16858 2.738743 CCAGTACCCATGGCTCATTTT 58.261 47.619 6.09 0.00 0.00 1.82
4750 16859 2.442236 CCAGTACCCATGGCTCATTT 57.558 50.000 6.09 0.00 0.00 2.32
4757 16866 1.227383 GGGAAGCCAGTACCCATGG 59.773 63.158 4.14 4.14 42.81 3.66
4758 16867 4.986467 GGGAAGCCAGTACCCATG 57.014 61.111 0.00 0.00 42.81 3.66
4761 16870 0.322546 CACTTGGGAAGCCAGTACCC 60.323 60.000 0.00 0.00 43.51 3.69
4762 16871 0.690762 TCACTTGGGAAGCCAGTACC 59.309 55.000 0.00 0.00 0.00 3.34
4763 16872 2.152016 GTTCACTTGGGAAGCCAGTAC 58.848 52.381 0.00 0.00 0.00 2.73
4764 16873 1.073284 GGTTCACTTGGGAAGCCAGTA 59.927 52.381 3.66 0.00 38.90 2.74
4765 16874 0.178990 GGTTCACTTGGGAAGCCAGT 60.179 55.000 3.66 0.00 38.90 4.00
4766 16875 0.178992 TGGTTCACTTGGGAAGCCAG 60.179 55.000 11.57 0.00 42.94 4.85
4767 16876 0.260230 TTGGTTCACTTGGGAAGCCA 59.740 50.000 11.57 7.38 42.94 4.75
4768 16877 1.273327 CATTGGTTCACTTGGGAAGCC 59.727 52.381 11.57 5.18 42.94 4.35
4769 16878 1.963515 ACATTGGTTCACTTGGGAAGC 59.036 47.619 7.75 7.75 43.66 3.86
4770 16879 4.342092 AGAAACATTGGTTCACTTGGGAAG 59.658 41.667 16.43 0.00 35.82 3.46
4771 16880 4.285863 AGAAACATTGGTTCACTTGGGAA 58.714 39.130 16.43 0.00 35.82 3.97
4772 16881 3.909732 AGAAACATTGGTTCACTTGGGA 58.090 40.909 16.43 0.00 35.82 4.37
4773 16882 4.099266 TGAAGAAACATTGGTTCACTTGGG 59.901 41.667 16.43 0.00 35.82 4.12
4774 16883 5.261209 TGAAGAAACATTGGTTCACTTGG 57.739 39.130 16.43 0.00 35.82 3.61
4775 16884 7.382218 GGTAATGAAGAAACATTGGTTCACTTG 59.618 37.037 16.43 0.00 40.15 3.16
4776 16885 7.433680 GGTAATGAAGAAACATTGGTTCACTT 58.566 34.615 16.43 3.12 40.15 3.16
4777 16886 6.293955 CGGTAATGAAGAAACATTGGTTCACT 60.294 38.462 16.43 3.19 40.15 3.41
4778 16887 5.856455 CGGTAATGAAGAAACATTGGTTCAC 59.144 40.000 16.43 10.18 40.15 3.18
4779 16888 5.765677 TCGGTAATGAAGAAACATTGGTTCA 59.234 36.000 16.43 6.39 40.15 3.18
4780 16889 6.084277 GTCGGTAATGAAGAAACATTGGTTC 58.916 40.000 6.31 6.31 40.15 3.62
4781 16890 5.048294 GGTCGGTAATGAAGAAACATTGGTT 60.048 40.000 0.00 0.00 40.15 3.67
4782 16891 4.457949 GGTCGGTAATGAAGAAACATTGGT 59.542 41.667 0.00 0.00 40.15 3.67
4783 16892 4.142469 GGGTCGGTAATGAAGAAACATTGG 60.142 45.833 0.00 0.00 40.15 3.16
4784 16893 4.436852 CGGGTCGGTAATGAAGAAACATTG 60.437 45.833 0.00 0.00 40.15 2.82
4785 16894 3.687698 CGGGTCGGTAATGAAGAAACATT 59.312 43.478 0.00 0.00 42.17 2.71
4786 16895 3.267483 CGGGTCGGTAATGAAGAAACAT 58.733 45.455 0.00 0.00 0.00 2.71
4787 16896 2.690786 CGGGTCGGTAATGAAGAAACA 58.309 47.619 0.00 0.00 0.00 2.83
4788 16897 1.395954 GCGGGTCGGTAATGAAGAAAC 59.604 52.381 0.00 0.00 0.00 2.78
4789 16898 1.676615 GGCGGGTCGGTAATGAAGAAA 60.677 52.381 0.00 0.00 0.00 2.52
4790 16899 0.108041 GGCGGGTCGGTAATGAAGAA 60.108 55.000 0.00 0.00 0.00 2.52
4791 16900 1.259142 TGGCGGGTCGGTAATGAAGA 61.259 55.000 0.00 0.00 0.00 2.87
4792 16901 0.391927 TTGGCGGGTCGGTAATGAAG 60.392 55.000 0.00 0.00 0.00 3.02
4793 16902 0.036448 TTTGGCGGGTCGGTAATGAA 59.964 50.000 0.00 0.00 0.00 2.57
4794 16903 0.391927 CTTTGGCGGGTCGGTAATGA 60.392 55.000 0.00 0.00 0.00 2.57
4795 16904 1.988834 GCTTTGGCGGGTCGGTAATG 61.989 60.000 0.00 0.00 0.00 1.90
4796 16905 1.747745 GCTTTGGCGGGTCGGTAAT 60.748 57.895 0.00 0.00 0.00 1.89
4797 16906 2.358984 GCTTTGGCGGGTCGGTAA 60.359 61.111 0.00 0.00 0.00 2.85
4798 16907 4.397832 GGCTTTGGCGGGTCGGTA 62.398 66.667 0.00 0.00 39.81 4.02
4802 16911 4.660938 ACTGGGCTTTGGCGGGTC 62.661 66.667 0.00 0.00 39.81 4.46
4803 16912 4.660938 GACTGGGCTTTGGCGGGT 62.661 66.667 0.00 0.00 39.81 5.28
4806 16915 3.726517 CACGACTGGGCTTTGGCG 61.727 66.667 0.00 0.00 39.81 5.69
4807 16916 2.193536 AACACGACTGGGCTTTGGC 61.194 57.895 0.00 0.00 37.82 4.52
4808 16917 1.101049 ACAACACGACTGGGCTTTGG 61.101 55.000 0.00 0.00 0.00 3.28
4809 16918 0.307760 GACAACACGACTGGGCTTTG 59.692 55.000 0.00 0.00 0.00 2.77
4810 16919 1.157870 CGACAACACGACTGGGCTTT 61.158 55.000 0.00 0.00 35.09 3.51
4811 16920 1.594293 CGACAACACGACTGGGCTT 60.594 57.895 0.00 0.00 35.09 4.35
4812 16921 2.029073 CGACAACACGACTGGGCT 59.971 61.111 0.00 0.00 35.09 5.19
4813 16922 2.279918 ACGACAACACGACTGGGC 60.280 61.111 0.00 0.00 37.03 5.36
4814 16923 0.939577 CTCACGACAACACGACTGGG 60.940 60.000 0.00 0.00 37.03 4.45
4815 16924 0.939577 CCTCACGACAACACGACTGG 60.940 60.000 0.00 0.00 37.03 4.00
4816 16925 0.030235 TCCTCACGACAACACGACTG 59.970 55.000 0.00 0.00 37.03 3.51
4817 16926 0.311165 CTCCTCACGACAACACGACT 59.689 55.000 0.00 0.00 37.03 4.18
4818 16927 0.309922 TCTCCTCACGACAACACGAC 59.690 55.000 0.00 0.00 37.03 4.34
4819 16928 0.591659 CTCTCCTCACGACAACACGA 59.408 55.000 0.00 0.00 37.03 4.35
4820 16929 0.387367 CCTCTCCTCACGACAACACG 60.387 60.000 0.00 0.00 39.31 4.49
4821 16930 0.667792 GCCTCTCCTCACGACAACAC 60.668 60.000 0.00 0.00 0.00 3.32
4822 16931 1.112916 TGCCTCTCCTCACGACAACA 61.113 55.000 0.00 0.00 0.00 3.33
4823 16932 0.033504 TTGCCTCTCCTCACGACAAC 59.966 55.000 0.00 0.00 0.00 3.32
4824 16933 0.756294 TTTGCCTCTCCTCACGACAA 59.244 50.000 0.00 0.00 0.00 3.18
4825 16934 0.756294 TTTTGCCTCTCCTCACGACA 59.244 50.000 0.00 0.00 0.00 4.35
4826 16935 1.433534 CTTTTGCCTCTCCTCACGAC 58.566 55.000 0.00 0.00 0.00 4.34
4827 16936 0.321671 CCTTTTGCCTCTCCTCACGA 59.678 55.000 0.00 0.00 0.00 4.35
4828 16937 0.321671 TCCTTTTGCCTCTCCTCACG 59.678 55.000 0.00 0.00 0.00 4.35
4829 16938 2.039084 TCTTCCTTTTGCCTCTCCTCAC 59.961 50.000 0.00 0.00 0.00 3.51
4830 16939 2.338809 TCTTCCTTTTGCCTCTCCTCA 58.661 47.619 0.00 0.00 0.00 3.86
4831 16940 3.054802 TGATCTTCCTTTTGCCTCTCCTC 60.055 47.826 0.00 0.00 0.00 3.71
4832 16941 2.915604 TGATCTTCCTTTTGCCTCTCCT 59.084 45.455 0.00 0.00 0.00 3.69
4833 16942 3.356529 TGATCTTCCTTTTGCCTCTCC 57.643 47.619 0.00 0.00 0.00 3.71
4834 16943 3.559242 CGATGATCTTCCTTTTGCCTCTC 59.441 47.826 3.19 0.00 0.00 3.20
4835 16944 3.539604 CGATGATCTTCCTTTTGCCTCT 58.460 45.455 3.19 0.00 0.00 3.69
4836 16945 2.615912 CCGATGATCTTCCTTTTGCCTC 59.384 50.000 3.19 0.00 0.00 4.70
4837 16946 2.239654 TCCGATGATCTTCCTTTTGCCT 59.760 45.455 3.19 0.00 0.00 4.75
4838 16947 2.643551 TCCGATGATCTTCCTTTTGCC 58.356 47.619 3.19 0.00 0.00 4.52
4839 16948 4.498682 CCATTCCGATGATCTTCCTTTTGC 60.499 45.833 3.19 0.00 35.16 3.68
4840 16949 4.883585 TCCATTCCGATGATCTTCCTTTTG 59.116 41.667 3.19 0.00 35.16 2.44
4841 16950 5.116084 TCCATTCCGATGATCTTCCTTTT 57.884 39.130 3.19 0.00 35.16 2.27
4842 16951 4.778213 TCCATTCCGATGATCTTCCTTT 57.222 40.909 3.19 0.00 35.16 3.11
4843 16952 4.506271 CCATCCATTCCGATGATCTTCCTT 60.506 45.833 3.19 0.00 41.92 3.36
4844 16953 3.008813 CCATCCATTCCGATGATCTTCCT 59.991 47.826 3.19 0.00 41.92 3.36
4845 16954 3.008375 TCCATCCATTCCGATGATCTTCC 59.992 47.826 3.19 0.00 41.92 3.46
4846 16955 4.252073 CTCCATCCATTCCGATGATCTTC 58.748 47.826 0.17 0.00 41.92 2.87
4847 16956 3.649981 ACTCCATCCATTCCGATGATCTT 59.350 43.478 0.17 0.00 41.92 2.40
4848 16957 3.246301 ACTCCATCCATTCCGATGATCT 58.754 45.455 0.17 0.00 41.92 2.75
4849 16958 3.692257 ACTCCATCCATTCCGATGATC 57.308 47.619 0.17 0.00 41.92 2.92
4850 16959 3.055530 GCTACTCCATCCATTCCGATGAT 60.056 47.826 0.17 0.00 41.92 2.45
4851 16960 2.300152 GCTACTCCATCCATTCCGATGA 59.700 50.000 0.17 0.00 41.92 2.92
4852 16961 2.613977 GGCTACTCCATCCATTCCGATG 60.614 54.545 0.00 0.00 39.54 3.84
4853 16962 1.625818 GGCTACTCCATCCATTCCGAT 59.374 52.381 0.00 0.00 34.01 4.18
4854 16963 1.048601 GGCTACTCCATCCATTCCGA 58.951 55.000 0.00 0.00 34.01 4.55
4855 16964 0.758734 TGGCTACTCCATCCATTCCG 59.241 55.000 0.00 0.00 40.72 4.30
4856 16965 3.152341 CATTGGCTACTCCATCCATTCC 58.848 50.000 0.00 0.00 46.04 3.01
4857 16966 4.070716 CTCATTGGCTACTCCATCCATTC 58.929 47.826 0.00 0.00 46.04 2.67
4858 16967 3.749954 GCTCATTGGCTACTCCATCCATT 60.750 47.826 0.00 0.00 46.04 3.16
4859 16968 2.224719 GCTCATTGGCTACTCCATCCAT 60.225 50.000 0.00 0.00 46.04 3.41
4860 16969 1.141657 GCTCATTGGCTACTCCATCCA 59.858 52.381 0.00 0.00 46.04 3.41
4861 16970 1.141657 TGCTCATTGGCTACTCCATCC 59.858 52.381 0.00 0.00 46.04 3.51
4862 16971 2.627515 TGCTCATTGGCTACTCCATC 57.372 50.000 0.00 0.00 46.04 3.51
4863 16972 2.507058 TCTTGCTCATTGGCTACTCCAT 59.493 45.455 0.00 0.00 46.04 3.41
4864 16973 1.908619 TCTTGCTCATTGGCTACTCCA 59.091 47.619 0.00 0.00 44.85 3.86
4865 16974 2.093235 AGTCTTGCTCATTGGCTACTCC 60.093 50.000 0.00 0.00 0.00 3.85
4866 16975 3.258971 AGTCTTGCTCATTGGCTACTC 57.741 47.619 0.00 0.00 0.00 2.59
4867 16976 3.604582 GAAGTCTTGCTCATTGGCTACT 58.395 45.455 0.00 0.00 0.00 2.57
4868 16977 2.349886 CGAAGTCTTGCTCATTGGCTAC 59.650 50.000 0.00 0.00 0.00 3.58
4869 16978 2.621338 CGAAGTCTTGCTCATTGGCTA 58.379 47.619 0.00 0.00 0.00 3.93
4870 16979 1.446907 CGAAGTCTTGCTCATTGGCT 58.553 50.000 0.00 0.00 0.00 4.75
4871 16980 3.984292 CGAAGTCTTGCTCATTGGC 57.016 52.632 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.