Multiple sequence alignment - TraesCS1B01G042400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G042400 chr1B 100.000 4789 0 0 1 4789 22107756 22112544 0.000000e+00 8844.0
1 TraesCS1B01G042400 chr1B 88.307 898 58 18 3820 4700 22923658 22924525 0.000000e+00 1033.0
2 TraesCS1B01G042400 chr1B 94.633 559 30 0 1431 1989 22838831 22839389 0.000000e+00 867.0
3 TraesCS1B01G042400 chr1B 90.941 563 31 7 3558 4105 22877970 22878527 0.000000e+00 739.0
4 TraesCS1B01G042400 chr1B 87.597 645 44 9 3556 4183 22861258 22861883 0.000000e+00 715.0
5 TraesCS1B01G042400 chr1B 88.235 289 23 2 3556 3833 22909440 22909728 7.680000e-88 335.0
6 TraesCS1B01G042400 chr1B 79.032 558 57 23 369 876 22907361 22907908 1.290000e-85 327.0
7 TraesCS1B01G042400 chr1B 88.608 237 27 0 1043 1279 22908350 22908586 6.060000e-74 289.0
8 TraesCS1B01G042400 chr1B 89.560 182 19 0 2790 2971 22908601 22908782 1.040000e-56 231.0
9 TraesCS1B01G042400 chr1B 91.304 115 6 3 152 266 22906816 22906926 2.310000e-33 154.0
10 TraesCS1B01G042400 chr1B 87.597 129 14 2 4287 4415 22861991 22862117 1.070000e-31 148.0
11 TraesCS1B01G042400 chr1A 87.836 1710 186 11 923 2631 16379884 16378196 0.000000e+00 1986.0
12 TraesCS1B01G042400 chr1A 86.020 1824 203 20 923 2722 16302004 16300209 0.000000e+00 1908.0
13 TraesCS1B01G042400 chr1A 88.462 702 53 12 3606 4283 15917129 15917826 0.000000e+00 822.0
14 TraesCS1B01G042400 chr1A 90.556 593 42 7 3187 3767 16018126 16018716 0.000000e+00 773.0
15 TraesCS1B01G042400 chr1A 90.372 592 45 4 3187 3767 15985104 15985694 0.000000e+00 767.0
16 TraesCS1B01G042400 chr1A 89.696 592 49 4 3187 3767 15960681 15961271 0.000000e+00 745.0
17 TraesCS1B01G042400 chr1A 94.370 373 19 2 3187 3558 16377489 16377118 5.380000e-159 571.0
18 TraesCS1B01G042400 chr1A 91.089 404 36 0 2648 3051 16378139 16377736 9.060000e-152 547.0
19 TraesCS1B01G042400 chr1A 92.593 324 24 0 2648 2971 16017559 16017882 2.610000e-127 466.0
20 TraesCS1B01G042400 chr1A 92.284 324 25 0 2648 2971 15984537 15984860 1.210000e-125 460.0
21 TraesCS1B01G042400 chr1A 82.704 503 73 10 3793 4287 16018711 16019207 7.360000e-118 435.0
22 TraesCS1B01G042400 chr1A 87.306 386 40 6 3181 3558 15916573 15916957 2.650000e-117 433.0
23 TraesCS1B01G042400 chr1A 90.432 324 31 0 2648 2971 15960121 15960444 1.230000e-115 427.0
24 TraesCS1B01G042400 chr1A 88.983 354 24 6 3606 3944 16299678 16299325 1.590000e-114 424.0
25 TraesCS1B01G042400 chr1A 82.236 501 72 13 3793 4284 15961266 15961758 2.670000e-112 416.0
26 TraesCS1B01G042400 chr1A 93.590 234 9 3 2402 2631 16017271 16017502 1.280000e-90 344.0
27 TraesCS1B01G042400 chr1A 93.478 230 13 2 2402 2631 15984253 15984480 1.650000e-89 340.0
28 TraesCS1B01G042400 chr1A 93.043 230 14 2 2402 2631 15959837 15960064 7.680000e-88 335.0
29 TraesCS1B01G042400 chr1A 85.121 289 34 5 3793 4074 15985689 15985975 2.180000e-73 287.0
30 TraesCS1B01G042400 chr1A 75.993 554 79 25 369 876 16386431 16385886 2.230000e-58 237.0
31 TraesCS1B01G042400 chr1A 88.824 170 9 3 3556 3715 16377047 16376878 2.920000e-47 200.0
32 TraesCS1B01G042400 chr1A 96.364 55 2 0 3556 3610 16299761 16299707 1.840000e-14 91.6
33 TraesCS1B01G042400 chr2D 81.935 1633 224 33 1029 2630 647275279 647273687 0.000000e+00 1315.0
34 TraesCS1B01G042400 chr2D 85.323 402 43 8 3187 3572 647273060 647272659 7.470000e-108 401.0
35 TraesCS1B01G042400 chr2D 88.923 325 34 2 2648 2971 647273630 647273307 2.690000e-107 399.0
36 TraesCS1B01G042400 chr2D 86.747 83 11 0 2969 3051 262614708 262614626 5.100000e-15 93.5
37 TraesCS1B01G042400 chr2D 85.542 83 11 1 2969 3051 270849455 270849536 8.540000e-13 86.1
38 TraesCS1B01G042400 chr2D 81.609 87 6 8 31 107 477241852 477241938 4.000000e-06 63.9
39 TraesCS1B01G042400 chr2A 81.269 1687 253 39 975 2630 773188973 773190627 0.000000e+00 1306.0
40 TraesCS1B01G042400 chr2A 89.538 325 32 2 2648 2971 773190684 773191007 1.240000e-110 411.0
41 TraesCS1B01G042400 chr2A 86.010 386 37 7 3187 3558 515484553 515484171 9.660000e-107 398.0
42 TraesCS1B01G042400 chr2A 84.887 397 43 6 3176 3558 773191245 773191638 7.520000e-103 385.0
43 TraesCS1B01G042400 chr2A 92.308 130 8 2 3050 3179 29366588 29366461 2.940000e-42 183.0
44 TraesCS1B01G042400 chr2A 89.474 57 6 0 3556 3612 515484077 515484021 6.650000e-09 73.1
45 TraesCS1B01G042400 chr1D 91.859 909 38 9 921 1829 15301312 15300440 0.000000e+00 1236.0
46 TraesCS1B01G042400 chr1D 82.588 850 82 26 3606 4412 15407599 15408425 0.000000e+00 689.0
47 TraesCS1B01G042400 chr1D 86.240 625 75 5 1557 2175 15398344 15398963 0.000000e+00 667.0
48 TraesCS1B01G042400 chr1D 92.086 417 27 3 1947 2361 15300433 15300021 2.480000e-162 582.0
49 TraesCS1B01G042400 chr1D 92.442 344 26 0 2661 3004 15299336 15298993 4.310000e-135 492.0
50 TraesCS1B01G042400 chr1D 88.767 365 33 6 2162 2523 15405646 15406005 1.580000e-119 440.0
51 TraesCS1B01G042400 chr1D 93.151 292 20 0 2680 2971 15406545 15406836 3.420000e-116 429.0
52 TraesCS1B01G042400 chr1D 91.667 240 18 1 2394 2631 15299629 15299390 9.930000e-87 331.0
53 TraesCS1B01G042400 chr1D 93.564 202 11 2 152 353 15302665 15302466 2.800000e-77 300.0
54 TraesCS1B01G042400 chr1D 98.113 106 2 0 3556 3661 15298816 15298711 8.180000e-43 185.0
55 TraesCS1B01G042400 chr5B 78.031 1493 292 20 1032 2506 672097811 672096337 0.000000e+00 907.0
56 TraesCS1B01G042400 chr5B 76.441 1371 244 54 980 2303 671903099 671901761 0.000000e+00 669.0
57 TraesCS1B01G042400 chr5B 75.530 1414 263 39 979 2355 672111837 672110470 6.810000e-173 617.0
58 TraesCS1B01G042400 chr5B 75.657 1331 238 49 1023 2288 671453873 671455182 6.910000e-163 584.0
59 TraesCS1B01G042400 chr5B 79.770 608 98 19 1005 1592 671706454 671707056 7.410000e-113 418.0
60 TraesCS1B01G042400 chr5B 78.876 587 97 15 1029 1591 671303050 671302467 5.850000e-99 372.0
61 TraesCS1B01G042400 chr5B 79.336 542 102 6 1815 2355 672108649 672108117 5.850000e-99 372.0
62 TraesCS1B01G042400 chr5B 79.472 492 87 13 1029 1510 671884582 671884095 2.140000e-88 337.0
63 TraesCS1B01G042400 chr5B 81.138 334 39 12 2655 2967 671900832 671900502 3.700000e-61 246.0
64 TraesCS1B01G042400 chr5B 84.375 64 10 0 2981 3044 601398959 601399022 4.000000e-06 63.9
65 TraesCS1B01G042400 chr2B 86.005 393 37 7 3181 3558 788678966 788679355 5.770000e-109 405.0
66 TraesCS1B01G042400 chr2B 84.000 75 12 0 2970 3044 82444177 82444251 6.650000e-09 73.1
67 TraesCS1B01G042400 chr2B 85.246 61 3 1 7 61 690957376 690957436 1.860000e-04 58.4
68 TraesCS1B01G042400 chr5D 79.466 599 96 22 929 1510 532271277 532271865 2.690000e-107 399.0
69 TraesCS1B01G042400 chr5D 79.125 594 95 19 1029 1597 532248788 532248199 2.700000e-102 383.0
70 TraesCS1B01G042400 chr5D 81.707 82 15 0 2970 3051 266749745 266749826 8.600000e-08 69.4
71 TraesCS1B01G042400 chr7B 75.128 587 120 20 1022 1589 739391181 739391760 7.960000e-63 252.0
72 TraesCS1B01G042400 chr5A 97.391 115 3 0 3055 3169 448307931 448307817 3.780000e-46 196.0
73 TraesCS1B01G042400 chr5A 95.763 118 5 0 3052 3169 705763468 705763585 1.760000e-44 191.0
74 TraesCS1B01G042400 chr5A 84.615 78 12 0 2967 3044 399293781 399293704 1.430000e-10 78.7
75 TraesCS1B01G042400 chr7D 95.000 120 6 0 3050 3169 600888979 600889098 6.330000e-44 189.0
76 TraesCS1B01G042400 chr7D 83.099 71 12 0 2981 3051 42635015 42634945 1.110000e-06 65.8
77 TraesCS1B01G042400 chr6A 95.000 120 6 0 3052 3171 100365124 100365243 6.330000e-44 189.0
78 TraesCS1B01G042400 chr4D 93.600 125 8 0 3050 3174 464794057 464794181 2.280000e-43 187.0
79 TraesCS1B01G042400 chr7A 92.308 130 8 2 3050 3178 682523442 682523570 2.940000e-42 183.0
80 TraesCS1B01G042400 chr7A 94.118 119 7 0 3050 3168 708599946 708600064 1.060000e-41 182.0
81 TraesCS1B01G042400 chr4A 92.683 123 9 0 3050 3172 48893512 48893634 1.370000e-40 178.0
82 TraesCS1B01G042400 chr4A 82.759 116 12 4 2507 2621 640005028 640005136 3.950000e-16 97.1
83 TraesCS1B01G042400 chr3B 87.805 82 10 0 2970 3051 820294875 820294794 3.950000e-16 97.1
84 TraesCS1B01G042400 chr3D 97.674 43 1 0 25 67 549704712 549704670 1.850000e-09 75.0
85 TraesCS1B01G042400 chrUn 90.698 43 4 0 25 67 108751140 108751098 1.860000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G042400 chr1B 22107756 22112544 4788 False 8844.000000 8844 100.000000 1 4789 1 chr1B.!!$F1 4788
1 TraesCS1B01G042400 chr1B 22923658 22924525 867 False 1033.000000 1033 88.307000 3820 4700 1 chr1B.!!$F4 880
2 TraesCS1B01G042400 chr1B 22838831 22839389 558 False 867.000000 867 94.633000 1431 1989 1 chr1B.!!$F2 558
3 TraesCS1B01G042400 chr1B 22877970 22878527 557 False 739.000000 739 90.941000 3558 4105 1 chr1B.!!$F3 547
4 TraesCS1B01G042400 chr1B 22861258 22862117 859 False 431.500000 715 87.597000 3556 4415 2 chr1B.!!$F5 859
5 TraesCS1B01G042400 chr1B 22906816 22909728 2912 False 267.200000 335 87.347800 152 3833 5 chr1B.!!$F6 3681
6 TraesCS1B01G042400 chr1A 16376878 16379884 3006 True 826.000000 1986 90.529750 923 3715 4 chr1A.!!$R3 2792
7 TraesCS1B01G042400 chr1A 16299325 16302004 2679 True 807.866667 1908 90.455667 923 3944 3 chr1A.!!$R2 3021
8 TraesCS1B01G042400 chr1A 15916573 15917826 1253 False 627.500000 822 87.884000 3181 4283 2 chr1A.!!$F1 1102
9 TraesCS1B01G042400 chr1A 16017271 16019207 1936 False 504.500000 773 89.860750 2402 4287 4 chr1A.!!$F4 1885
10 TraesCS1B01G042400 chr1A 15959837 15961758 1921 False 480.750000 745 88.851750 2402 4284 4 chr1A.!!$F2 1882
11 TraesCS1B01G042400 chr1A 15984253 15985975 1722 False 463.500000 767 90.313750 2402 4074 4 chr1A.!!$F3 1672
12 TraesCS1B01G042400 chr1A 16385886 16386431 545 True 237.000000 237 75.993000 369 876 1 chr1A.!!$R1 507
13 TraesCS1B01G042400 chr2D 647272659 647275279 2620 True 705.000000 1315 85.393667 1029 3572 3 chr2D.!!$R2 2543
14 TraesCS1B01G042400 chr2A 773188973 773191638 2665 False 700.666667 1306 85.231333 975 3558 3 chr2A.!!$F1 2583
15 TraesCS1B01G042400 chr2A 515484021 515484553 532 True 235.550000 398 87.742000 3187 3612 2 chr2A.!!$R2 425
16 TraesCS1B01G042400 chr1D 15398344 15398963 619 False 667.000000 667 86.240000 1557 2175 1 chr1D.!!$F1 618
17 TraesCS1B01G042400 chr1D 15298711 15302665 3954 True 521.000000 1236 93.288500 152 3661 6 chr1D.!!$R1 3509
18 TraesCS1B01G042400 chr1D 15405646 15408425 2779 False 519.333333 689 88.168667 2162 4412 3 chr1D.!!$F2 2250
19 TraesCS1B01G042400 chr5B 672096337 672097811 1474 True 907.000000 907 78.031000 1032 2506 1 chr5B.!!$R3 1474
20 TraesCS1B01G042400 chr5B 671453873 671455182 1309 False 584.000000 584 75.657000 1023 2288 1 chr5B.!!$F2 1265
21 TraesCS1B01G042400 chr5B 672108117 672111837 3720 True 494.500000 617 77.433000 979 2355 2 chr5B.!!$R5 1376
22 TraesCS1B01G042400 chr5B 671900502 671903099 2597 True 457.500000 669 78.789500 980 2967 2 chr5B.!!$R4 1987
23 TraesCS1B01G042400 chr5B 671706454 671707056 602 False 418.000000 418 79.770000 1005 1592 1 chr5B.!!$F3 587
24 TraesCS1B01G042400 chr5B 671302467 671303050 583 True 372.000000 372 78.876000 1029 1591 1 chr5B.!!$R1 562
25 TraesCS1B01G042400 chr5D 532271277 532271865 588 False 399.000000 399 79.466000 929 1510 1 chr5D.!!$F2 581
26 TraesCS1B01G042400 chr5D 532248199 532248788 589 True 383.000000 383 79.125000 1029 1597 1 chr5D.!!$R1 568
27 TraesCS1B01G042400 chr7B 739391181 739391760 579 False 252.000000 252 75.128000 1022 1589 1 chr7B.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 1556 0.107410 TGTCAAAACGACCTGTGGCT 60.107 50.0 0.00 0.0 44.71 4.75 F
890 1562 0.179067 AACGACCTGTGGCTTTCGAA 60.179 50.0 0.00 0.0 35.45 3.71 F
1743 2905 0.603707 CTGTGTTCAGTGCACCGGAT 60.604 55.0 14.63 0.0 36.97 4.18 F
2643 5256 0.039527 GTTTTTAGGGCGTGGCAGTG 60.040 55.0 0.00 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 2861 0.321122 CTGAACACAGTCAGGGAGCC 60.321 60.0 0.0 0.0 41.21 4.70 R
1745 2907 1.257750 ATACAGGCAGTCGCAGTGGA 61.258 55.0 0.0 0.0 41.24 4.02 R
3076 5922 0.178973 AACTTGCACCCCCAACTACC 60.179 55.0 0.0 0.0 0.00 3.18 R
4160 7655 0.846427 TTCCCATTCCAGCCTCCAGT 60.846 55.0 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.441718 AAAAAGAGATCTATGAGCACCCA 57.558 39.130 0.00 0.00 0.00 4.51
32 33 4.686191 AAAGAGATCTATGAGCACCCAG 57.314 45.455 0.00 0.00 0.00 4.45
33 34 2.607499 AGAGATCTATGAGCACCCAGG 58.393 52.381 0.00 0.00 0.00 4.45
34 35 2.178764 AGAGATCTATGAGCACCCAGGA 59.821 50.000 0.00 0.00 0.00 3.86
35 36 2.298729 GAGATCTATGAGCACCCAGGAC 59.701 54.545 0.00 0.00 0.00 3.85
36 37 2.042464 GATCTATGAGCACCCAGGACA 58.958 52.381 0.00 0.00 0.00 4.02
37 38 2.180946 TCTATGAGCACCCAGGACAT 57.819 50.000 0.00 0.00 0.00 3.06
38 39 3.328535 TCTATGAGCACCCAGGACATA 57.671 47.619 0.00 0.00 0.00 2.29
39 40 3.861846 TCTATGAGCACCCAGGACATAT 58.138 45.455 0.00 0.00 0.00 1.78
40 41 4.234550 TCTATGAGCACCCAGGACATATT 58.765 43.478 0.00 0.00 0.00 1.28
41 42 3.959495 ATGAGCACCCAGGACATATTT 57.041 42.857 0.00 0.00 0.00 1.40
42 43 3.737559 TGAGCACCCAGGACATATTTT 57.262 42.857 0.00 0.00 0.00 1.82
43 44 4.046286 TGAGCACCCAGGACATATTTTT 57.954 40.909 0.00 0.00 0.00 1.94
44 45 5.186256 TGAGCACCCAGGACATATTTTTA 57.814 39.130 0.00 0.00 0.00 1.52
45 46 5.765510 TGAGCACCCAGGACATATTTTTAT 58.234 37.500 0.00 0.00 0.00 1.40
46 47 6.905736 TGAGCACCCAGGACATATTTTTATA 58.094 36.000 0.00 0.00 0.00 0.98
47 48 7.350382 TGAGCACCCAGGACATATTTTTATAA 58.650 34.615 0.00 0.00 0.00 0.98
48 49 7.836685 TGAGCACCCAGGACATATTTTTATAAA 59.163 33.333 0.00 0.00 0.00 1.40
49 50 8.602472 AGCACCCAGGACATATTTTTATAAAA 57.398 30.769 6.54 6.54 0.00 1.52
50 51 8.695456 AGCACCCAGGACATATTTTTATAAAAG 58.305 33.333 10.40 2.66 0.00 2.27
51 52 8.691797 GCACCCAGGACATATTTTTATAAAAGA 58.308 33.333 10.40 4.31 0.00 2.52
54 55 9.750125 CCCAGGACATATTTTTATAAAAGAAGC 57.250 33.333 10.40 1.33 0.00 3.86
55 56 9.750125 CCAGGACATATTTTTATAAAAGAAGCC 57.250 33.333 10.40 8.85 0.00 4.35
56 57 9.750125 CAGGACATATTTTTATAAAAGAAGCCC 57.250 33.333 10.40 9.09 0.00 5.19
57 58 9.487442 AGGACATATTTTTATAAAAGAAGCCCA 57.513 29.630 10.40 0.00 0.00 5.36
58 59 9.529325 GGACATATTTTTATAAAAGAAGCCCAC 57.471 33.333 10.40 1.73 0.00 4.61
59 60 9.529325 GACATATTTTTATAAAAGAAGCCCACC 57.471 33.333 10.40 0.00 0.00 4.61
60 61 8.482943 ACATATTTTTATAAAAGAAGCCCACCC 58.517 33.333 10.40 0.00 0.00 4.61
61 62 6.943899 ATTTTTATAAAAGAAGCCCACCCA 57.056 33.333 10.40 0.00 0.00 4.51
62 63 5.993748 TTTTATAAAAGAAGCCCACCCAG 57.006 39.130 6.54 0.00 0.00 4.45
63 64 2.532250 ATAAAAGAAGCCCACCCAGG 57.468 50.000 0.00 0.00 37.03 4.45
64 65 1.154430 TAAAAGAAGCCCACCCAGGT 58.846 50.000 0.00 0.00 34.66 4.00
65 66 0.469892 AAAAGAAGCCCACCCAGGTG 60.470 55.000 10.00 10.00 45.02 4.00
75 76 1.837090 ACCCAGGTGAACTGTGACC 59.163 57.895 0.00 1.80 46.06 4.02
76 77 1.073199 CCCAGGTGAACTGTGACCC 59.927 63.158 0.00 0.00 46.06 4.46
77 78 1.418908 CCCAGGTGAACTGTGACCCT 61.419 60.000 0.00 0.00 46.06 4.34
78 79 0.474184 CCAGGTGAACTGTGACCCTT 59.526 55.000 0.00 0.00 46.06 3.95
79 80 1.133792 CCAGGTGAACTGTGACCCTTT 60.134 52.381 0.00 0.00 46.06 3.11
80 81 2.654863 CAGGTGAACTGTGACCCTTTT 58.345 47.619 5.80 0.00 42.42 2.27
81 82 2.618709 CAGGTGAACTGTGACCCTTTTC 59.381 50.000 5.80 0.00 42.42 2.29
82 83 1.954382 GGTGAACTGTGACCCTTTTCC 59.046 52.381 0.00 0.00 0.00 3.13
83 84 2.650322 GTGAACTGTGACCCTTTTCCA 58.350 47.619 0.00 0.00 0.00 3.53
84 85 2.357952 GTGAACTGTGACCCTTTTCCAC 59.642 50.000 0.00 0.00 0.00 4.02
85 86 2.241176 TGAACTGTGACCCTTTTCCACT 59.759 45.455 0.00 0.00 0.00 4.00
86 87 3.456644 TGAACTGTGACCCTTTTCCACTA 59.543 43.478 0.00 0.00 0.00 2.74
87 88 3.771577 ACTGTGACCCTTTTCCACTAG 57.228 47.619 0.00 0.00 0.00 2.57
88 89 2.372172 ACTGTGACCCTTTTCCACTAGG 59.628 50.000 0.00 0.00 0.00 3.02
89 90 1.073284 TGTGACCCTTTTCCACTAGGC 59.927 52.381 0.00 0.00 33.74 3.93
90 91 1.351350 GTGACCCTTTTCCACTAGGCT 59.649 52.381 0.00 0.00 33.74 4.58
91 92 2.570302 GTGACCCTTTTCCACTAGGCTA 59.430 50.000 0.00 0.00 33.74 3.93
92 93 2.570302 TGACCCTTTTCCACTAGGCTAC 59.430 50.000 0.00 0.00 33.74 3.58
93 94 2.570302 GACCCTTTTCCACTAGGCTACA 59.430 50.000 0.00 0.00 33.74 2.74
94 95 2.572104 ACCCTTTTCCACTAGGCTACAG 59.428 50.000 0.00 0.00 33.74 2.74
95 96 2.633488 CCTTTTCCACTAGGCTACAGC 58.367 52.381 0.00 0.00 41.14 4.40
109 110 4.245845 GCTACAGCCTAGTTCTCATACC 57.754 50.000 0.00 0.00 34.31 2.73
110 111 3.637229 GCTACAGCCTAGTTCTCATACCA 59.363 47.826 0.00 0.00 34.31 3.25
111 112 4.261825 GCTACAGCCTAGTTCTCATACCAG 60.262 50.000 0.00 0.00 34.31 4.00
112 113 3.982516 ACAGCCTAGTTCTCATACCAGA 58.017 45.455 0.00 0.00 0.00 3.86
113 114 3.957497 ACAGCCTAGTTCTCATACCAGAG 59.043 47.826 0.00 0.00 36.97 3.35
114 115 2.962421 AGCCTAGTTCTCATACCAGAGC 59.038 50.000 0.00 0.00 35.59 4.09
115 116 2.695666 GCCTAGTTCTCATACCAGAGCA 59.304 50.000 0.00 0.00 35.59 4.26
116 117 3.133003 GCCTAGTTCTCATACCAGAGCAA 59.867 47.826 0.00 0.00 35.59 3.91
117 118 4.383118 GCCTAGTTCTCATACCAGAGCAAA 60.383 45.833 0.00 0.00 35.59 3.68
118 119 5.355596 CCTAGTTCTCATACCAGAGCAAAG 58.644 45.833 0.00 0.00 35.59 2.77
119 120 5.127845 CCTAGTTCTCATACCAGAGCAAAGA 59.872 44.000 0.00 0.00 35.59 2.52
120 121 5.083533 AGTTCTCATACCAGAGCAAAGAG 57.916 43.478 0.00 0.00 35.59 2.85
121 122 4.774726 AGTTCTCATACCAGAGCAAAGAGA 59.225 41.667 0.00 0.00 35.59 3.10
122 123 4.998671 TCTCATACCAGAGCAAAGAGAG 57.001 45.455 0.00 0.00 35.59 3.20
123 124 4.604156 TCTCATACCAGAGCAAAGAGAGA 58.396 43.478 0.00 0.00 35.59 3.10
124 125 5.207354 TCTCATACCAGAGCAAAGAGAGAT 58.793 41.667 0.00 0.00 35.59 2.75
125 126 6.368805 TCTCATACCAGAGCAAAGAGAGATA 58.631 40.000 0.00 0.00 35.59 1.98
126 127 6.836007 TCTCATACCAGAGCAAAGAGAGATAA 59.164 38.462 0.00 0.00 35.59 1.75
127 128 7.014134 TCTCATACCAGAGCAAAGAGAGATAAG 59.986 40.741 0.00 0.00 35.59 1.73
128 129 4.135747 ACCAGAGCAAAGAGAGATAAGC 57.864 45.455 0.00 0.00 0.00 3.09
129 130 3.517100 ACCAGAGCAAAGAGAGATAAGCA 59.483 43.478 0.00 0.00 0.00 3.91
130 131 4.019860 ACCAGAGCAAAGAGAGATAAGCAA 60.020 41.667 0.00 0.00 0.00 3.91
131 132 4.940046 CCAGAGCAAAGAGAGATAAGCAAA 59.060 41.667 0.00 0.00 0.00 3.68
132 133 5.589452 CCAGAGCAAAGAGAGATAAGCAAAT 59.411 40.000 0.00 0.00 0.00 2.32
133 134 6.095160 CCAGAGCAAAGAGAGATAAGCAAATT 59.905 38.462 0.00 0.00 0.00 1.82
134 135 7.281774 CCAGAGCAAAGAGAGATAAGCAAATTA 59.718 37.037 0.00 0.00 0.00 1.40
135 136 8.336806 CAGAGCAAAGAGAGATAAGCAAATTAG 58.663 37.037 0.00 0.00 0.00 1.73
136 137 8.263640 AGAGCAAAGAGAGATAAGCAAATTAGA 58.736 33.333 0.00 0.00 0.00 2.10
137 138 8.436046 AGCAAAGAGAGATAAGCAAATTAGAG 57.564 34.615 0.00 0.00 0.00 2.43
138 139 7.012232 AGCAAAGAGAGATAAGCAAATTAGAGC 59.988 37.037 0.00 0.00 0.00 4.09
139 140 7.638134 CAAAGAGAGATAAGCAAATTAGAGCC 58.362 38.462 0.00 0.00 0.00 4.70
140 141 5.537188 AGAGAGATAAGCAAATTAGAGCCG 58.463 41.667 0.00 0.00 0.00 5.52
141 142 4.061596 AGAGATAAGCAAATTAGAGCCGC 58.938 43.478 0.00 0.00 0.00 6.53
142 143 3.808728 AGATAAGCAAATTAGAGCCGCA 58.191 40.909 0.00 0.00 0.00 5.69
143 144 4.392940 AGATAAGCAAATTAGAGCCGCAT 58.607 39.130 0.00 0.00 0.00 4.73
144 145 5.551233 AGATAAGCAAATTAGAGCCGCATA 58.449 37.500 0.00 0.00 0.00 3.14
145 146 5.997746 AGATAAGCAAATTAGAGCCGCATAA 59.002 36.000 0.00 0.00 0.00 1.90
146 147 4.981806 AAGCAAATTAGAGCCGCATAAA 57.018 36.364 0.00 0.00 0.00 1.40
147 148 4.558538 AGCAAATTAGAGCCGCATAAAG 57.441 40.909 0.00 0.00 0.00 1.85
148 149 4.199310 AGCAAATTAGAGCCGCATAAAGA 58.801 39.130 0.00 0.00 0.00 2.52
149 150 4.640201 AGCAAATTAGAGCCGCATAAAGAA 59.360 37.500 0.00 0.00 0.00 2.52
150 151 4.735338 GCAAATTAGAGCCGCATAAAGAAC 59.265 41.667 0.00 0.00 0.00 3.01
189 190 8.784043 GTTAAGAGGAAGACAATGCTTTCTTTA 58.216 33.333 8.50 4.50 33.86 1.85
190 191 9.520515 TTAAGAGGAAGACAATGCTTTCTTTAT 57.479 29.630 8.50 0.56 33.86 1.40
228 229 4.403734 ACAAGTTATTGGTCCGGTGATTT 58.596 39.130 0.00 0.00 40.97 2.17
265 321 6.946340 TCAAGATGTGCTAGAATTGGTCTTA 58.054 36.000 0.00 0.00 37.84 2.10
311 367 0.392336 GGAAAATGCAGCACAACCCA 59.608 50.000 0.00 0.00 0.00 4.51
345 401 3.694566 GCTGGTTCCGTAATCAAGGATTT 59.305 43.478 0.00 0.00 36.28 2.17
364 767 3.552132 TTTATTCCATGGCGTCAGCTA 57.448 42.857 6.96 0.00 44.37 3.32
367 770 1.898330 TTCCATGGCGTCAGCTAGCA 61.898 55.000 18.83 0.00 44.37 3.49
393 796 1.781786 AGAGAAAGATCAGCCGCCTA 58.218 50.000 0.00 0.00 0.00 3.93
397 800 1.795286 GAAAGATCAGCCGCCTAATCG 59.205 52.381 0.00 0.00 0.00 3.34
433 836 1.338105 TGTGCAGCGCATCTTACTTCT 60.338 47.619 11.47 0.00 41.91 2.85
438 841 3.126000 GCAGCGCATCTTACTTCTTTCTT 59.874 43.478 11.47 0.00 0.00 2.52
467 871 4.204028 ACCCAACAAGCCCAGCGT 62.204 61.111 0.00 0.00 0.00 5.07
478 882 3.767230 CCAGCGTCGCGACACAAG 61.767 66.667 35.71 22.74 0.00 3.16
490 894 1.680338 GACACAAGGCAACCTTCTGT 58.320 50.000 6.95 6.95 43.51 3.41
493 897 3.626930 ACACAAGGCAACCTTCTGTAAA 58.373 40.909 5.59 0.00 42.67 2.01
539 968 3.121030 CCGCCTTCAGCAACCTCG 61.121 66.667 0.00 0.00 44.04 4.63
545 974 0.236711 CTTCAGCAACCTCGCAACAG 59.763 55.000 0.00 0.00 0.00 3.16
548 977 1.893808 AGCAACCTCGCAACAGTGG 60.894 57.895 0.00 0.00 0.00 4.00
551 980 1.943968 GCAACCTCGCAACAGTGGATA 60.944 52.381 0.00 0.00 0.00 2.59
556 985 2.009051 CTCGCAACAGTGGATAATGCA 58.991 47.619 0.00 0.00 36.84 3.96
588 1017 1.244816 CGCCTCCACCGAGACATATA 58.755 55.000 0.00 0.00 38.52 0.86
595 1024 1.002142 CACCGAGACATATAACGCCGA 60.002 52.381 0.00 0.00 0.00 5.54
603 1032 2.093869 ACATATAACGCCGACCACTGTT 60.094 45.455 0.00 0.00 0.00 3.16
604 1033 2.282701 TATAACGCCGACCACTGTTC 57.717 50.000 0.00 0.00 0.00 3.18
611 1040 1.392510 GCCGACCACTGTTCGTTAATC 59.607 52.381 1.75 0.00 0.00 1.75
612 1041 2.679450 CCGACCACTGTTCGTTAATCA 58.321 47.619 1.75 0.00 0.00 2.57
613 1042 3.259064 CCGACCACTGTTCGTTAATCAT 58.741 45.455 1.75 0.00 0.00 2.45
614 1043 3.682858 CCGACCACTGTTCGTTAATCATT 59.317 43.478 1.75 0.00 0.00 2.57
615 1044 4.153475 CCGACCACTGTTCGTTAATCATTT 59.847 41.667 1.75 0.00 0.00 2.32
616 1045 5.079406 CGACCACTGTTCGTTAATCATTTG 58.921 41.667 0.00 0.00 0.00 2.32
638 1074 2.032117 CACTTGCACACATTTGCGTCTA 60.032 45.455 0.00 0.00 46.20 2.59
647 1083 3.425193 CACATTTGCGTCTACAAAAAGGC 59.575 43.478 0.00 0.00 42.45 4.35
650 1086 1.681538 TGCGTCTACAAAAAGGCCAA 58.318 45.000 5.01 0.00 0.00 4.52
692 1128 2.264794 GTCGTCGGTGCCTCCATT 59.735 61.111 0.00 0.00 35.57 3.16
706 1143 3.381272 GCCTCCATTATGCTACTTTGCAA 59.619 43.478 0.00 0.00 46.61 4.08
722 1159 1.070786 CAACTACACCACCGCCACT 59.929 57.895 0.00 0.00 0.00 4.00
724 1161 1.404479 AACTACACCACCGCCACTGA 61.404 55.000 0.00 0.00 0.00 3.41
730 1170 1.820906 CCACCGCCACTGATGATGG 60.821 63.158 0.00 0.00 40.50 3.51
786 1241 8.290325 AGACGATTTAAAGAGTTCCACAATTTC 58.710 33.333 0.00 0.00 0.00 2.17
787 1242 7.936584 ACGATTTAAAGAGTTCCACAATTTCA 58.063 30.769 0.00 0.00 0.00 2.69
822 1277 7.756722 CAGAAAACACCCAAAATAGCTAATCAG 59.243 37.037 0.00 0.00 0.00 2.90
876 1548 3.866910 TGTGTAACCTCTGTCAAAACGAC 59.133 43.478 0.00 0.00 40.14 4.34
877 1549 3.246936 GTGTAACCTCTGTCAAAACGACC 59.753 47.826 0.00 0.00 44.71 4.79
878 1550 3.133362 TGTAACCTCTGTCAAAACGACCT 59.867 43.478 0.00 0.00 44.71 3.85
879 1551 2.240493 ACCTCTGTCAAAACGACCTG 57.760 50.000 0.00 0.00 44.71 4.00
880 1552 1.485066 ACCTCTGTCAAAACGACCTGT 59.515 47.619 0.00 0.00 44.71 4.00
881 1553 1.867233 CCTCTGTCAAAACGACCTGTG 59.133 52.381 0.00 0.00 44.71 3.66
882 1554 1.867233 CTCTGTCAAAACGACCTGTGG 59.133 52.381 0.00 0.00 44.71 4.17
884 1556 0.107410 TGTCAAAACGACCTGTGGCT 60.107 50.000 0.00 0.00 44.71 4.75
887 1559 1.673920 TCAAAACGACCTGTGGCTTTC 59.326 47.619 0.00 0.00 0.00 2.62
890 1562 0.179067 AACGACCTGTGGCTTTCGAA 60.179 50.000 0.00 0.00 35.45 3.71
893 1565 1.336517 CGACCTGTGGCTTTCGAACTA 60.337 52.381 0.00 0.00 33.20 2.24
895 1567 2.479275 GACCTGTGGCTTTCGAACTAAC 59.521 50.000 0.00 0.00 0.00 2.34
897 1569 2.550208 CCTGTGGCTTTCGAACTAACCT 60.550 50.000 0.00 0.00 0.00 3.50
898 1570 2.480419 CTGTGGCTTTCGAACTAACCTG 59.520 50.000 0.00 0.00 0.00 4.00
899 1571 1.804748 GTGGCTTTCGAACTAACCTGG 59.195 52.381 0.00 0.00 0.00 4.45
900 1572 1.418637 TGGCTTTCGAACTAACCTGGT 59.581 47.619 0.00 0.00 0.00 4.00
905 1577 4.319549 GCTTTCGAACTAACCTGGTTGAAG 60.320 45.833 22.04 14.33 0.00 3.02
906 1578 2.762745 TCGAACTAACCTGGTTGAAGC 58.237 47.619 22.04 8.06 0.00 3.86
907 1579 2.367567 TCGAACTAACCTGGTTGAAGCT 59.632 45.455 22.04 3.65 0.00 3.74
909 1581 4.039488 TCGAACTAACCTGGTTGAAGCTTA 59.961 41.667 22.04 0.00 0.00 3.09
910 1582 4.753107 CGAACTAACCTGGTTGAAGCTTAA 59.247 41.667 22.04 0.00 0.00 1.85
911 1583 5.237779 CGAACTAACCTGGTTGAAGCTTAAA 59.762 40.000 22.04 0.00 0.00 1.52
912 1584 6.238538 CGAACTAACCTGGTTGAAGCTTAAAA 60.239 38.462 22.04 0.00 0.00 1.52
913 1585 7.412853 AACTAACCTGGTTGAAGCTTAAAAA 57.587 32.000 22.04 0.00 0.00 1.94
962 1938 3.141488 CTCCCCTCCACCGTCTCG 61.141 72.222 0.00 0.00 0.00 4.04
1238 2280 4.103103 GCCAACCCGCTTCTTCGC 62.103 66.667 0.00 0.00 0.00 4.70
1266 2308 2.124942 GCCTCGCCCTTCTCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
1334 2385 3.474570 CGCCCTCTTCCTCCCCAG 61.475 72.222 0.00 0.00 0.00 4.45
1344 2395 2.767496 CTCCCCAGGAGCCAGGAG 60.767 72.222 0.00 3.06 43.29 3.69
1368 2425 0.613777 GGAAACTCCTCGTGTGGGAT 59.386 55.000 0.00 0.00 32.53 3.85
1714 2861 3.070734 CCTGGAGTATGATCTGTCAAGGG 59.929 52.174 0.00 0.00 38.01 3.95
1715 2862 3.041211 TGGAGTATGATCTGTCAAGGGG 58.959 50.000 0.00 0.00 38.01 4.79
1743 2905 0.603707 CTGTGTTCAGTGCACCGGAT 60.604 55.000 14.63 0.00 36.97 4.18
1744 2906 0.884259 TGTGTTCAGTGCACCGGATG 60.884 55.000 14.63 5.23 36.11 3.51
1745 2907 0.884704 GTGTTCAGTGCACCGGATGT 60.885 55.000 14.63 0.00 0.00 3.06
1786 2948 1.928868 TCTCATGCTCACAGAGGACA 58.071 50.000 0.00 0.00 31.84 4.02
1918 3083 2.656947 TTTGCTCCCAACTAGTGCTT 57.343 45.000 0.00 0.00 0.00 3.91
1926 3091 1.537202 CCAACTAGTGCTTGCTTGGAC 59.463 52.381 0.00 0.00 34.41 4.02
2094 3265 2.633481 AGTTGTCACCTTCTACACTCCC 59.367 50.000 0.00 0.00 0.00 4.30
2098 3269 2.567615 GTCACCTTCTACACTCCCATGT 59.432 50.000 0.00 0.00 36.56 3.21
2104 3283 0.460311 CTACACTCCCATGTCCCGAC 59.540 60.000 0.00 0.00 33.85 4.79
2193 3385 5.248380 AGGAGAAAACAGTAAATCAGGCT 57.752 39.130 0.00 0.00 0.00 4.58
2304 3496 0.542333 GAGGGCTCTACTCCCAAACC 59.458 60.000 0.00 0.00 46.36 3.27
2342 3535 4.156008 GCTACCCTGAAACATTTGTACAGG 59.844 45.833 20.41 20.41 44.54 4.00
2374 3569 4.994282 GGAGAAAAAGAACTCCCCCTTAA 58.006 43.478 0.00 0.00 44.70 1.85
2398 3949 7.928307 ATTCAGTGCTCTTTAAGATTAGCAA 57.072 32.000 8.58 0.00 45.81 3.91
2428 4030 5.610398 CCATTAGTTGCTTTGGGACTTTTT 58.390 37.500 0.00 0.00 0.00 1.94
2473 4081 9.448438 TGAATTTAGAGCAGCTTTAGATGTTTA 57.552 29.630 0.00 0.00 33.30 2.01
2632 5245 4.943705 TGCATTGCTCTCTAGGTTTTTAGG 59.056 41.667 10.49 0.00 0.00 2.69
2633 5246 4.336713 GCATTGCTCTCTAGGTTTTTAGGG 59.663 45.833 0.16 0.00 0.00 3.53
2634 5247 3.629142 TGCTCTCTAGGTTTTTAGGGC 57.371 47.619 0.00 0.00 0.00 5.19
2636 5249 2.093606 GCTCTCTAGGTTTTTAGGGCGT 60.094 50.000 0.00 0.00 0.00 5.68
2637 5250 3.522553 CTCTCTAGGTTTTTAGGGCGTG 58.477 50.000 0.00 0.00 0.00 5.34
2638 5251 2.235402 TCTCTAGGTTTTTAGGGCGTGG 59.765 50.000 0.00 0.00 0.00 4.94
2639 5252 1.092348 CTAGGTTTTTAGGGCGTGGC 58.908 55.000 0.00 0.00 0.00 5.01
2640 5253 0.400975 TAGGTTTTTAGGGCGTGGCA 59.599 50.000 0.00 0.00 0.00 4.92
2641 5254 0.893727 AGGTTTTTAGGGCGTGGCAG 60.894 55.000 0.00 0.00 0.00 4.85
2642 5255 1.176619 GGTTTTTAGGGCGTGGCAGT 61.177 55.000 0.00 0.00 0.00 4.40
2643 5256 0.039527 GTTTTTAGGGCGTGGCAGTG 60.040 55.000 0.00 0.00 0.00 3.66
2644 5257 1.801309 TTTTTAGGGCGTGGCAGTGC 61.801 55.000 6.55 6.55 0.00 4.40
2803 5468 6.091849 CGTGGATTCTCATCATCATTCCATAC 59.908 42.308 0.00 0.00 34.55 2.39
2832 5497 6.711645 ACCATTTATTCAATGCTGTTTTGCTT 59.288 30.769 0.00 0.00 41.10 3.91
3015 5861 3.396560 AGCGTTTGGACCACTACTTTAC 58.603 45.455 0.00 0.00 0.00 2.01
3026 5872 6.182507 ACCACTACTTTACTGATCCAAACA 57.817 37.500 0.00 0.00 0.00 2.83
3046 5892 8.395633 CCAAACACTCTTATATTTCTTTACGGG 58.604 37.037 0.00 0.00 0.00 5.28
3063 5909 3.805497 GGGGACCGGGGATGAACC 61.805 72.222 6.32 0.00 40.86 3.62
3064 5910 2.691252 GGGACCGGGGATGAACCT 60.691 66.667 6.32 0.00 38.98 3.50
3065 5911 2.306384 GGGACCGGGGATGAACCTT 61.306 63.158 6.32 0.00 38.98 3.50
3066 5912 1.077716 GGACCGGGGATGAACCTTG 60.078 63.158 6.32 0.00 38.98 3.61
3067 5913 1.683441 GACCGGGGATGAACCTTGT 59.317 57.895 6.32 0.00 38.98 3.16
3068 5914 0.392595 GACCGGGGATGAACCTTGTC 60.393 60.000 6.32 0.00 38.98 3.18
3069 5915 1.077716 CCGGGGATGAACCTTGTCC 60.078 63.158 0.00 0.00 38.98 4.02
3070 5916 1.449601 CGGGGATGAACCTTGTCCG 60.450 63.158 0.00 0.00 38.98 4.79
3071 5917 1.077716 GGGGATGAACCTTGTCCGG 60.078 63.158 0.00 0.00 38.98 5.14
3072 5918 1.683441 GGGATGAACCTTGTCCGGT 59.317 57.895 0.00 0.00 39.48 5.28
3074 5920 1.546998 GGGATGAACCTTGTCCGGTTT 60.547 52.381 0.00 0.00 46.85 3.27
3075 5921 1.810755 GGATGAACCTTGTCCGGTTTC 59.189 52.381 0.00 0.00 46.85 2.78
3076 5922 1.463444 GATGAACCTTGTCCGGTTTCG 59.537 52.381 0.00 0.00 46.85 3.46
3086 5932 4.289312 CGGTTTCGGTAGTTGGGG 57.711 61.111 0.00 0.00 0.00 4.96
3087 5933 1.376295 CGGTTTCGGTAGTTGGGGG 60.376 63.158 0.00 0.00 0.00 5.40
3088 5934 1.763120 GGTTTCGGTAGTTGGGGGT 59.237 57.895 0.00 0.00 0.00 4.95
3089 5935 0.607217 GGTTTCGGTAGTTGGGGGTG 60.607 60.000 0.00 0.00 0.00 4.61
3090 5936 1.073548 TTTCGGTAGTTGGGGGTGC 59.926 57.895 0.00 0.00 0.00 5.01
3091 5937 1.706995 TTTCGGTAGTTGGGGGTGCA 61.707 55.000 0.00 0.00 0.00 4.57
3092 5938 1.706995 TTCGGTAGTTGGGGGTGCAA 61.707 55.000 0.00 0.00 0.00 4.08
3093 5939 1.674322 CGGTAGTTGGGGGTGCAAG 60.674 63.158 0.00 0.00 0.00 4.01
3094 5940 1.458927 GGTAGTTGGGGGTGCAAGT 59.541 57.895 0.00 0.00 0.00 3.16
3095 5941 0.178973 GGTAGTTGGGGGTGCAAGTT 60.179 55.000 0.00 0.00 0.00 2.66
3096 5942 0.958822 GTAGTTGGGGGTGCAAGTTG 59.041 55.000 0.00 0.00 0.00 3.16
3097 5943 0.553819 TAGTTGGGGGTGCAAGTTGT 59.446 50.000 4.48 0.00 0.00 3.32
3098 5944 0.755327 AGTTGGGGGTGCAAGTTGTC 60.755 55.000 4.48 0.00 0.00 3.18
3099 5945 1.456705 TTGGGGGTGCAAGTTGTCC 60.457 57.895 4.48 7.60 0.00 4.02
3100 5946 2.983592 GGGGGTGCAAGTTGTCCG 60.984 66.667 4.48 0.00 0.00 4.79
3101 5947 2.983592 GGGGTGCAAGTTGTCCGG 60.984 66.667 4.48 0.00 0.00 5.14
3102 5948 2.203294 GGGTGCAAGTTGTCCGGT 60.203 61.111 0.00 0.00 0.00 5.28
3103 5949 1.826487 GGGTGCAAGTTGTCCGGTT 60.826 57.895 0.00 0.00 0.00 4.44
3104 5950 1.388837 GGGTGCAAGTTGTCCGGTTT 61.389 55.000 0.00 0.00 0.00 3.27
3105 5951 0.458260 GGTGCAAGTTGTCCGGTTTT 59.542 50.000 0.00 0.00 0.00 2.43
3106 5952 1.555477 GTGCAAGTTGTCCGGTTTTG 58.445 50.000 0.00 1.72 0.00 2.44
3107 5953 1.133407 GTGCAAGTTGTCCGGTTTTGA 59.867 47.619 0.00 0.00 0.00 2.69
3108 5954 1.819288 TGCAAGTTGTCCGGTTTTGAA 59.181 42.857 0.00 0.00 0.00 2.69
3109 5955 2.159310 TGCAAGTTGTCCGGTTTTGAAG 60.159 45.455 0.00 0.00 0.00 3.02
3110 5956 2.159296 GCAAGTTGTCCGGTTTTGAAGT 60.159 45.455 0.00 0.00 0.00 3.01
3111 5957 3.674955 GCAAGTTGTCCGGTTTTGAAGTT 60.675 43.478 0.00 0.00 0.00 2.66
3112 5958 3.775661 AGTTGTCCGGTTTTGAAGTTG 57.224 42.857 0.00 0.00 0.00 3.16
3113 5959 3.349022 AGTTGTCCGGTTTTGAAGTTGA 58.651 40.909 0.00 0.00 0.00 3.18
3114 5960 3.377172 AGTTGTCCGGTTTTGAAGTTGAG 59.623 43.478 0.00 0.00 0.00 3.02
3115 5961 2.294074 TGTCCGGTTTTGAAGTTGAGG 58.706 47.619 0.00 0.00 0.00 3.86
3116 5962 1.607148 GTCCGGTTTTGAAGTTGAGGG 59.393 52.381 0.00 0.00 0.00 4.30
3117 5963 0.958822 CCGGTTTTGAAGTTGAGGGG 59.041 55.000 0.00 0.00 0.00 4.79
3118 5964 0.313987 CGGTTTTGAAGTTGAGGGGC 59.686 55.000 0.00 0.00 0.00 5.80
3119 5965 0.679505 GGTTTTGAAGTTGAGGGGCC 59.320 55.000 0.00 0.00 0.00 5.80
3120 5966 1.408969 GTTTTGAAGTTGAGGGGCCA 58.591 50.000 4.39 0.00 0.00 5.36
3121 5967 1.760029 GTTTTGAAGTTGAGGGGCCAA 59.240 47.619 4.39 0.00 0.00 4.52
3122 5968 2.166907 TTTGAAGTTGAGGGGCCAAA 57.833 45.000 4.39 0.00 0.00 3.28
3123 5969 2.397044 TTGAAGTTGAGGGGCCAAAT 57.603 45.000 4.39 0.00 0.00 2.32
3124 5970 1.923356 TGAAGTTGAGGGGCCAAATC 58.077 50.000 4.39 0.02 0.00 2.17
3125 5971 1.428912 TGAAGTTGAGGGGCCAAATCT 59.571 47.619 4.39 0.00 0.00 2.40
3126 5972 2.647299 TGAAGTTGAGGGGCCAAATCTA 59.353 45.455 4.39 0.00 0.00 1.98
3127 5973 3.282885 GAAGTTGAGGGGCCAAATCTAG 58.717 50.000 4.39 0.00 0.00 2.43
3128 5974 2.562296 AGTTGAGGGGCCAAATCTAGA 58.438 47.619 4.39 0.00 0.00 2.43
3129 5975 2.239907 AGTTGAGGGGCCAAATCTAGAC 59.760 50.000 4.39 1.75 0.00 2.59
3130 5976 2.239907 GTTGAGGGGCCAAATCTAGACT 59.760 50.000 4.39 0.00 0.00 3.24
3131 5977 2.119495 TGAGGGGCCAAATCTAGACTC 58.881 52.381 4.39 0.00 0.00 3.36
3132 5978 1.418264 GAGGGGCCAAATCTAGACTCC 59.582 57.143 4.39 0.00 0.00 3.85
3133 5979 1.213296 GGGGCCAAATCTAGACTCCA 58.787 55.000 4.39 0.00 0.00 3.86
3134 5980 1.134068 GGGGCCAAATCTAGACTCCAC 60.134 57.143 4.39 0.00 0.00 4.02
3135 5981 1.134068 GGGCCAAATCTAGACTCCACC 60.134 57.143 4.39 0.00 0.00 4.61
3136 5982 1.559682 GGCCAAATCTAGACTCCACCA 59.440 52.381 0.00 0.00 0.00 4.17
3137 5983 2.026262 GGCCAAATCTAGACTCCACCAA 60.026 50.000 0.00 0.00 0.00 3.67
3138 5984 3.561313 GGCCAAATCTAGACTCCACCAAA 60.561 47.826 0.00 0.00 0.00 3.28
3139 5985 4.079253 GCCAAATCTAGACTCCACCAAAA 58.921 43.478 0.00 0.00 0.00 2.44
3140 5986 4.156739 GCCAAATCTAGACTCCACCAAAAG 59.843 45.833 0.00 0.00 0.00 2.27
3141 5987 5.316987 CCAAATCTAGACTCCACCAAAAGT 58.683 41.667 0.00 0.00 0.00 2.66
3142 5988 5.770162 CCAAATCTAGACTCCACCAAAAGTT 59.230 40.000 0.00 0.00 0.00 2.66
3143 5989 6.294176 CCAAATCTAGACTCCACCAAAAGTTG 60.294 42.308 0.00 0.00 0.00 3.16
3144 5990 5.825593 ATCTAGACTCCACCAAAAGTTGA 57.174 39.130 0.00 0.00 0.00 3.18
3145 5991 5.215252 TCTAGACTCCACCAAAAGTTGAG 57.785 43.478 0.00 0.00 42.63 3.02
3146 5992 3.214696 AGACTCCACCAAAAGTTGAGG 57.785 47.619 0.00 0.00 41.53 3.86
3147 5993 2.158608 AGACTCCACCAAAAGTTGAGGG 60.159 50.000 0.00 0.00 41.53 4.30
3148 5994 1.850345 ACTCCACCAAAAGTTGAGGGA 59.150 47.619 0.00 0.00 41.53 4.20
3149 5995 2.230660 CTCCACCAAAAGTTGAGGGAC 58.769 52.381 0.00 0.00 35.15 4.46
3150 5996 0.951558 CCACCAAAAGTTGAGGGACG 59.048 55.000 0.00 0.00 0.00 4.79
3151 5997 1.476110 CCACCAAAAGTTGAGGGACGA 60.476 52.381 0.00 0.00 0.00 4.20
3152 5998 2.294074 CACCAAAAGTTGAGGGACGAA 58.706 47.619 0.00 0.00 0.00 3.85
3153 5999 2.685897 CACCAAAAGTTGAGGGACGAAA 59.314 45.455 0.00 0.00 0.00 3.46
3154 6000 3.129638 CACCAAAAGTTGAGGGACGAAAA 59.870 43.478 0.00 0.00 0.00 2.29
3155 6001 3.380320 ACCAAAAGTTGAGGGACGAAAAG 59.620 43.478 0.00 0.00 0.00 2.27
3156 6002 3.380320 CCAAAAGTTGAGGGACGAAAAGT 59.620 43.478 0.00 0.00 0.00 2.66
3157 6003 4.577283 CCAAAAGTTGAGGGACGAAAAGTA 59.423 41.667 0.00 0.00 0.00 2.24
3158 6004 5.240844 CCAAAAGTTGAGGGACGAAAAGTAT 59.759 40.000 0.00 0.00 0.00 2.12
3159 6005 6.428771 CCAAAAGTTGAGGGACGAAAAGTATA 59.571 38.462 0.00 0.00 0.00 1.47
3160 6006 7.295930 CAAAAGTTGAGGGACGAAAAGTATAC 58.704 38.462 0.00 0.00 0.00 1.47
3161 6007 5.997384 AGTTGAGGGACGAAAAGTATACT 57.003 39.130 0.00 0.00 0.00 2.12
3162 6008 6.356186 AGTTGAGGGACGAAAAGTATACTT 57.644 37.500 12.50 12.50 37.91 2.24
3495 6808 1.337728 TGCCTGACACATCGTACAAGG 60.338 52.381 0.00 0.00 0.00 3.61
3590 7001 5.859205 AAGTCTCCATTGTTTGCTCTTTT 57.141 34.783 0.00 0.00 0.00 2.27
3694 7151 6.614694 TTCTTACATGGGTGTAGCTTTCTA 57.385 37.500 0.00 0.00 41.56 2.10
3868 7336 7.335171 TGATGTTCAAGACTTGGTATGAAGATG 59.665 37.037 15.13 0.00 36.34 2.90
3873 7341 6.212589 TCAAGACTTGGTATGAAGATGGTGTA 59.787 38.462 15.13 0.00 0.00 2.90
3875 7343 5.721960 AGACTTGGTATGAAGATGGTGTAGT 59.278 40.000 0.00 0.00 0.00 2.73
3878 7346 7.556844 ACTTGGTATGAAGATGGTGTAGTAAG 58.443 38.462 0.00 0.00 0.00 2.34
3958 7434 9.227777 GAAAAACTATTTGTATCTGGTACACCT 57.772 33.333 0.00 0.00 42.82 4.00
3959 7435 8.561738 AAAACTATTTGTATCTGGTACACCTG 57.438 34.615 0.00 0.00 42.82 4.00
4001 7477 3.189702 ATGTTTAACATTGGAACGGTCCG 59.810 43.478 16.31 10.48 37.87 4.79
4145 7640 4.095782 CCGAGAAAAACAACCTTCTGTTCA 59.904 41.667 0.00 0.00 38.59 3.18
4160 7655 7.390162 ACCTTCTGTTCAATTTTTGCAGAAAAA 59.610 29.630 6.49 2.56 42.99 1.94
4177 7672 0.040204 AAACTGGAGGCTGGAATGGG 59.960 55.000 0.00 0.00 0.00 4.00
4294 7797 5.514136 GGAGATAGAGAAGCAGTAGGAGCTA 60.514 48.000 0.00 0.00 42.53 3.32
4398 7930 4.261994 GCAGGTTTTTGTCTTGCCTTGATA 60.262 41.667 0.00 0.00 32.94 2.15
4420 7952 0.249868 TTGGTGTCTCAGGTCAAGCG 60.250 55.000 0.00 0.00 0.00 4.68
4421 7953 1.112916 TGGTGTCTCAGGTCAAGCGA 61.113 55.000 0.00 0.00 0.00 4.93
4440 7972 3.304391 GCGACCTGCTGTGTTATTTTCAA 60.304 43.478 0.00 0.00 41.73 2.69
4447 7979 6.150976 CCTGCTGTGTTATTTTCAATGGTCTA 59.849 38.462 0.00 0.00 0.00 2.59
4525 8057 1.802069 AAAGCGAAGTGGAAGAGAGC 58.198 50.000 0.00 0.00 0.00 4.09
4610 8143 4.267349 TGGGACAAGTTAGTGCTACTTC 57.733 45.455 0.00 0.00 33.73 3.01
4650 8183 3.067320 ACCTTCAGCTTGCTCTGTTTTTC 59.933 43.478 0.00 0.00 35.63 2.29
4655 8188 1.065551 GCTTGCTCTGTTTTTCCGTGT 59.934 47.619 0.00 0.00 0.00 4.49
4656 8189 2.719798 CTTGCTCTGTTTTTCCGTGTG 58.280 47.619 0.00 0.00 0.00 3.82
4657 8190 2.031258 TGCTCTGTTTTTCCGTGTGA 57.969 45.000 0.00 0.00 0.00 3.58
4658 8191 1.668751 TGCTCTGTTTTTCCGTGTGAC 59.331 47.619 0.00 0.00 0.00 3.67
4659 8192 1.940613 GCTCTGTTTTTCCGTGTGACT 59.059 47.619 0.00 0.00 0.00 3.41
4660 8193 2.032808 GCTCTGTTTTTCCGTGTGACTC 60.033 50.000 0.00 0.00 0.00 3.36
4661 8194 3.194861 CTCTGTTTTTCCGTGTGACTCA 58.805 45.455 0.00 0.00 0.00 3.41
4665 8198 3.942115 TGTTTTTCCGTGTGACTCATGAA 59.058 39.130 0.00 0.00 35.23 2.57
4690 8223 3.037549 TGATTTGTGGAAACCCTTTGCT 58.962 40.909 0.00 0.00 31.65 3.91
4700 8233 4.301628 GAAACCCTTTGCTTTCATCAGTG 58.698 43.478 0.00 0.00 0.00 3.66
4701 8234 3.228188 ACCCTTTGCTTTCATCAGTGA 57.772 42.857 0.00 0.00 0.00 3.41
4702 8235 2.887152 ACCCTTTGCTTTCATCAGTGAC 59.113 45.455 0.00 0.00 33.11 3.67
4703 8236 2.886523 CCCTTTGCTTTCATCAGTGACA 59.113 45.455 0.00 0.00 33.11 3.58
4704 8237 3.318839 CCCTTTGCTTTCATCAGTGACAA 59.681 43.478 0.00 0.00 33.11 3.18
4705 8238 4.202141 CCCTTTGCTTTCATCAGTGACAAA 60.202 41.667 0.00 0.00 33.11 2.83
4706 8239 5.510179 CCCTTTGCTTTCATCAGTGACAAAT 60.510 40.000 0.00 0.00 31.53 2.32
4707 8240 5.632347 CCTTTGCTTTCATCAGTGACAAATC 59.368 40.000 0.00 0.00 31.53 2.17
4708 8241 4.771590 TGCTTTCATCAGTGACAAATCC 57.228 40.909 0.00 0.00 33.11 3.01
4709 8242 4.401022 TGCTTTCATCAGTGACAAATCCT 58.599 39.130 0.00 0.00 33.11 3.24
4710 8243 4.216902 TGCTTTCATCAGTGACAAATCCTG 59.783 41.667 0.00 0.00 33.11 3.86
4711 8244 4.730657 CTTTCATCAGTGACAAATCCTGC 58.269 43.478 0.00 0.00 33.11 4.85
4712 8245 3.708403 TCATCAGTGACAAATCCTGCT 57.292 42.857 0.00 0.00 0.00 4.24
4713 8246 4.824479 TCATCAGTGACAAATCCTGCTA 57.176 40.909 0.00 0.00 0.00 3.49
4714 8247 4.763073 TCATCAGTGACAAATCCTGCTAG 58.237 43.478 0.00 0.00 0.00 3.42
4715 8248 4.223700 TCATCAGTGACAAATCCTGCTAGT 59.776 41.667 0.00 0.00 0.00 2.57
4716 8249 3.930336 TCAGTGACAAATCCTGCTAGTG 58.070 45.455 0.00 0.00 0.00 2.74
4717 8250 3.324846 TCAGTGACAAATCCTGCTAGTGT 59.675 43.478 0.00 0.00 0.00 3.55
4718 8251 3.681897 CAGTGACAAATCCTGCTAGTGTC 59.318 47.826 0.00 0.00 39.22 3.67
4719 8252 3.580458 AGTGACAAATCCTGCTAGTGTCT 59.420 43.478 8.37 0.00 39.45 3.41
4720 8253 3.929610 GTGACAAATCCTGCTAGTGTCTC 59.070 47.826 8.37 2.60 39.45 3.36
4721 8254 3.834813 TGACAAATCCTGCTAGTGTCTCT 59.165 43.478 8.37 0.00 39.45 3.10
4722 8255 4.284490 TGACAAATCCTGCTAGTGTCTCTT 59.716 41.667 8.37 0.00 39.45 2.85
4723 8256 5.480422 TGACAAATCCTGCTAGTGTCTCTTA 59.520 40.000 8.37 0.00 39.45 2.10
4724 8257 6.014584 TGACAAATCCTGCTAGTGTCTCTTAA 60.015 38.462 8.37 0.00 39.45 1.85
4725 8258 6.166982 ACAAATCCTGCTAGTGTCTCTTAAC 58.833 40.000 0.00 0.00 0.00 2.01
4726 8259 6.014156 ACAAATCCTGCTAGTGTCTCTTAACT 60.014 38.462 0.00 0.00 0.00 2.24
4727 8260 6.613153 AATCCTGCTAGTGTCTCTTAACTT 57.387 37.500 0.00 0.00 0.00 2.66
4728 8261 5.392767 TCCTGCTAGTGTCTCTTAACTTG 57.607 43.478 0.00 0.00 0.00 3.16
4729 8262 5.077564 TCCTGCTAGTGTCTCTTAACTTGA 58.922 41.667 0.00 0.00 0.00 3.02
4730 8263 5.538813 TCCTGCTAGTGTCTCTTAACTTGAA 59.461 40.000 0.00 0.00 0.00 2.69
4731 8264 6.211584 TCCTGCTAGTGTCTCTTAACTTGAAT 59.788 38.462 0.00 0.00 0.00 2.57
4732 8265 6.876257 CCTGCTAGTGTCTCTTAACTTGAATT 59.124 38.462 0.00 0.00 0.00 2.17
4733 8266 7.389053 CCTGCTAGTGTCTCTTAACTTGAATTT 59.611 37.037 0.00 0.00 0.00 1.82
4734 8267 8.677148 TGCTAGTGTCTCTTAACTTGAATTTT 57.323 30.769 0.00 0.00 0.00 1.82
4735 8268 9.120538 TGCTAGTGTCTCTTAACTTGAATTTTT 57.879 29.630 0.00 0.00 0.00 1.94
4736 8269 9.600646 GCTAGTGTCTCTTAACTTGAATTTTTC 57.399 33.333 0.00 0.00 0.00 2.29
4738 8271 8.753497 AGTGTCTCTTAACTTGAATTTTTCCT 57.247 30.769 0.00 0.00 0.00 3.36
4739 8272 8.624776 AGTGTCTCTTAACTTGAATTTTTCCTG 58.375 33.333 0.00 0.00 0.00 3.86
4740 8273 8.621286 GTGTCTCTTAACTTGAATTTTTCCTGA 58.379 33.333 0.00 0.00 0.00 3.86
4741 8274 8.621286 TGTCTCTTAACTTGAATTTTTCCTGAC 58.379 33.333 0.00 0.00 0.00 3.51
4742 8275 8.621286 GTCTCTTAACTTGAATTTTTCCTGACA 58.379 33.333 0.00 0.00 0.00 3.58
4743 8276 9.184523 TCTCTTAACTTGAATTTTTCCTGACAA 57.815 29.630 0.00 0.00 0.00 3.18
4744 8277 9.237846 CTCTTAACTTGAATTTTTCCTGACAAC 57.762 33.333 0.00 0.00 0.00 3.32
4745 8278 8.744652 TCTTAACTTGAATTTTTCCTGACAACA 58.255 29.630 0.00 0.00 0.00 3.33
4746 8279 9.364989 CTTAACTTGAATTTTTCCTGACAACAA 57.635 29.630 0.00 0.00 0.00 2.83
4747 8280 9.712305 TTAACTTGAATTTTTCCTGACAACAAA 57.288 25.926 0.00 0.00 0.00 2.83
4748 8281 8.614469 AACTTGAATTTTTCCTGACAACAAAA 57.386 26.923 0.00 0.00 0.00 2.44
4749 8282 8.614469 ACTTGAATTTTTCCTGACAACAAAAA 57.386 26.923 6.46 6.46 0.00 1.94
4750 8283 8.720562 ACTTGAATTTTTCCTGACAACAAAAAG 58.279 29.630 8.92 0.00 0.00 2.27
4751 8284 8.614469 TTGAATTTTTCCTGACAACAAAAAGT 57.386 26.923 8.92 6.88 0.00 2.66
4752 8285 8.614469 TGAATTTTTCCTGACAACAAAAAGTT 57.386 26.923 8.92 4.57 42.42 2.66
4763 8296 3.951775 ACAAAAAGTTGTGCAGTTCCA 57.048 38.095 0.00 0.00 46.40 3.53
4764 8297 4.264460 ACAAAAAGTTGTGCAGTTCCAA 57.736 36.364 0.00 0.00 46.40 3.53
4765 8298 4.244862 ACAAAAAGTTGTGCAGTTCCAAG 58.755 39.130 0.00 0.00 46.40 3.61
4766 8299 2.584492 AAAGTTGTGCAGTTCCAAGC 57.416 45.000 0.00 0.00 0.00 4.01
4767 8300 0.746659 AAGTTGTGCAGTTCCAAGCC 59.253 50.000 0.00 0.00 0.00 4.35
4768 8301 0.106519 AGTTGTGCAGTTCCAAGCCT 60.107 50.000 0.00 0.00 0.00 4.58
4769 8302 0.746659 GTTGTGCAGTTCCAAGCCTT 59.253 50.000 0.00 0.00 0.00 4.35
4770 8303 1.032014 TTGTGCAGTTCCAAGCCTTC 58.968 50.000 0.00 0.00 0.00 3.46
4771 8304 0.183492 TGTGCAGTTCCAAGCCTTCT 59.817 50.000 0.00 0.00 0.00 2.85
4772 8305 1.322442 GTGCAGTTCCAAGCCTTCTT 58.678 50.000 0.00 0.00 0.00 2.52
4773 8306 2.158682 TGTGCAGTTCCAAGCCTTCTTA 60.159 45.455 0.00 0.00 0.00 2.10
4774 8307 2.226674 GTGCAGTTCCAAGCCTTCTTAC 59.773 50.000 0.00 0.00 0.00 2.34
4775 8308 2.106511 TGCAGTTCCAAGCCTTCTTACT 59.893 45.455 0.00 0.00 0.00 2.24
4776 8309 3.149981 GCAGTTCCAAGCCTTCTTACTT 58.850 45.455 0.00 0.00 0.00 2.24
4777 8310 3.570125 GCAGTTCCAAGCCTTCTTACTTT 59.430 43.478 0.00 0.00 0.00 2.66
4778 8311 4.557496 GCAGTTCCAAGCCTTCTTACTTTG 60.557 45.833 0.00 0.00 0.00 2.77
4779 8312 4.580580 CAGTTCCAAGCCTTCTTACTTTGT 59.419 41.667 0.00 0.00 0.00 2.83
4780 8313 4.580580 AGTTCCAAGCCTTCTTACTTTGTG 59.419 41.667 0.00 0.00 0.00 3.33
4781 8314 2.884639 TCCAAGCCTTCTTACTTTGTGC 59.115 45.455 0.00 0.00 0.00 4.57
4782 8315 2.622942 CCAAGCCTTCTTACTTTGTGCA 59.377 45.455 0.00 0.00 0.00 4.57
4783 8316 3.550842 CCAAGCCTTCTTACTTTGTGCAC 60.551 47.826 10.75 10.75 0.00 4.57
4784 8317 2.930950 AGCCTTCTTACTTTGTGCACA 58.069 42.857 17.42 17.42 0.00 4.57
4785 8318 3.490348 AGCCTTCTTACTTTGTGCACAT 58.510 40.909 22.39 8.69 0.00 3.21
4786 8319 4.651778 AGCCTTCTTACTTTGTGCACATA 58.348 39.130 22.39 15.50 0.00 2.29
4787 8320 4.697352 AGCCTTCTTACTTTGTGCACATAG 59.303 41.667 28.80 28.80 0.00 2.23
4788 8321 4.672801 GCCTTCTTACTTTGTGCACATAGC 60.673 45.833 29.90 15.24 45.96 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.435291 CTGGGTGCTCATAGATCTCTTTTT 58.565 41.667 0.00 0.00 0.00 1.94
10 11 4.141528 CCTGGGTGCTCATAGATCTCTTTT 60.142 45.833 0.00 0.00 0.00 2.27
12 13 2.971330 CCTGGGTGCTCATAGATCTCTT 59.029 50.000 0.00 0.00 0.00 2.85
14 15 2.298729 GTCCTGGGTGCTCATAGATCTC 59.701 54.545 0.00 0.00 0.00 2.75
15 16 2.324541 GTCCTGGGTGCTCATAGATCT 58.675 52.381 0.00 0.00 0.00 2.75
16 17 2.042464 TGTCCTGGGTGCTCATAGATC 58.958 52.381 0.00 0.00 0.00 2.75
18 19 2.180946 ATGTCCTGGGTGCTCATAGA 57.819 50.000 0.00 0.00 0.00 1.98
20 21 5.387113 AAAATATGTCCTGGGTGCTCATA 57.613 39.130 0.00 0.00 0.00 2.15
22 23 3.737559 AAAATATGTCCTGGGTGCTCA 57.262 42.857 0.00 0.00 0.00 4.26
23 24 7.817418 TTATAAAAATATGTCCTGGGTGCTC 57.183 36.000 0.00 0.00 0.00 4.26
24 25 8.602472 TTTTATAAAAATATGTCCTGGGTGCT 57.398 30.769 8.20 0.00 0.00 4.40
25 26 8.691797 TCTTTTATAAAAATATGTCCTGGGTGC 58.308 33.333 11.62 0.00 0.00 5.01
28 29 9.750125 GCTTCTTTTATAAAAATATGTCCTGGG 57.250 33.333 11.62 0.00 0.00 4.45
29 30 9.750125 GGCTTCTTTTATAAAAATATGTCCTGG 57.250 33.333 11.62 0.00 0.00 4.45
30 31 9.750125 GGGCTTCTTTTATAAAAATATGTCCTG 57.250 33.333 11.62 0.00 0.00 3.86
31 32 9.487442 TGGGCTTCTTTTATAAAAATATGTCCT 57.513 29.630 19.51 0.00 0.00 3.85
32 33 9.529325 GTGGGCTTCTTTTATAAAAATATGTCC 57.471 33.333 11.62 14.09 0.00 4.02
33 34 9.529325 GGTGGGCTTCTTTTATAAAAATATGTC 57.471 33.333 11.62 6.90 0.00 3.06
34 35 8.482943 GGGTGGGCTTCTTTTATAAAAATATGT 58.517 33.333 11.62 0.00 0.00 2.29
35 36 8.482128 TGGGTGGGCTTCTTTTATAAAAATATG 58.518 33.333 11.62 6.74 0.00 1.78
36 37 8.616799 TGGGTGGGCTTCTTTTATAAAAATAT 57.383 30.769 11.62 0.00 0.00 1.28
37 38 7.125053 CCTGGGTGGGCTTCTTTTATAAAAATA 59.875 37.037 11.62 1.05 0.00 1.40
38 39 6.070251 CCTGGGTGGGCTTCTTTTATAAAAAT 60.070 38.462 11.62 0.00 0.00 1.82
39 40 5.247337 CCTGGGTGGGCTTCTTTTATAAAAA 59.753 40.000 11.62 0.00 0.00 1.94
40 41 4.775253 CCTGGGTGGGCTTCTTTTATAAAA 59.225 41.667 10.16 10.16 0.00 1.52
41 42 4.202738 ACCTGGGTGGGCTTCTTTTATAAA 60.203 41.667 0.00 0.00 41.11 1.40
42 43 3.335484 ACCTGGGTGGGCTTCTTTTATAA 59.665 43.478 0.00 0.00 41.11 0.98
43 44 2.923629 ACCTGGGTGGGCTTCTTTTATA 59.076 45.455 0.00 0.00 41.11 0.98
44 45 1.716503 ACCTGGGTGGGCTTCTTTTAT 59.283 47.619 0.00 0.00 41.11 1.40
45 46 1.154430 ACCTGGGTGGGCTTCTTTTA 58.846 50.000 0.00 0.00 41.11 1.52
46 47 0.469892 CACCTGGGTGGGCTTCTTTT 60.470 55.000 11.62 0.00 42.00 2.27
47 48 1.153756 CACCTGGGTGGGCTTCTTT 59.846 57.895 11.62 0.00 42.00 2.52
48 49 1.360393 TTCACCTGGGTGGGCTTCTT 61.360 55.000 18.26 0.00 45.43 2.52
49 50 1.774217 TTCACCTGGGTGGGCTTCT 60.774 57.895 18.26 0.00 45.43 2.85
50 51 1.603739 GTTCACCTGGGTGGGCTTC 60.604 63.158 18.26 3.31 45.43 3.86
51 52 2.084930 AGTTCACCTGGGTGGGCTT 61.085 57.895 18.26 1.53 45.43 4.35
52 53 2.450502 AGTTCACCTGGGTGGGCT 60.451 61.111 18.26 13.49 45.43 5.19
53 54 2.282462 CAGTTCACCTGGGTGGGC 60.282 66.667 18.26 11.72 45.43 5.36
54 55 1.228245 CACAGTTCACCTGGGTGGG 60.228 63.158 18.26 9.23 46.06 4.61
55 56 0.535102 GTCACAGTTCACCTGGGTGG 60.535 60.000 18.26 6.14 45.43 4.61
56 57 0.535102 GGTCACAGTTCACCTGGGTG 60.535 60.000 13.12 13.12 45.43 4.61
57 58 1.705997 GGGTCACAGTTCACCTGGGT 61.706 60.000 0.00 0.00 45.43 4.51
58 59 1.073199 GGGTCACAGTTCACCTGGG 59.927 63.158 0.00 0.00 46.70 4.45
59 60 0.474184 AAGGGTCACAGTTCACCTGG 59.526 55.000 0.00 0.00 46.06 4.45
61 62 2.422945 GGAAAAGGGTCACAGTTCACCT 60.423 50.000 0.00 0.00 32.69 4.00
62 63 1.954382 GGAAAAGGGTCACAGTTCACC 59.046 52.381 0.00 0.00 0.00 4.02
63 64 2.357952 GTGGAAAAGGGTCACAGTTCAC 59.642 50.000 0.00 0.00 0.00 3.18
64 65 2.241176 AGTGGAAAAGGGTCACAGTTCA 59.759 45.455 0.00 0.00 34.17 3.18
65 66 2.932261 AGTGGAAAAGGGTCACAGTTC 58.068 47.619 0.00 0.00 34.17 3.01
66 67 3.181443 CCTAGTGGAAAAGGGTCACAGTT 60.181 47.826 0.00 0.00 34.17 3.16
67 68 2.372172 CCTAGTGGAAAAGGGTCACAGT 59.628 50.000 0.00 0.00 34.17 3.55
68 69 2.876079 GCCTAGTGGAAAAGGGTCACAG 60.876 54.545 0.00 0.00 34.17 3.66
69 70 1.073284 GCCTAGTGGAAAAGGGTCACA 59.927 52.381 0.00 0.00 34.17 3.58
70 71 1.351350 AGCCTAGTGGAAAAGGGTCAC 59.649 52.381 0.00 0.00 39.36 3.67
71 72 1.742308 AGCCTAGTGGAAAAGGGTCA 58.258 50.000 0.00 0.00 39.36 4.02
72 73 2.570302 TGTAGCCTAGTGGAAAAGGGTC 59.430 50.000 0.00 0.00 42.49 4.46
73 74 2.572104 CTGTAGCCTAGTGGAAAAGGGT 59.428 50.000 0.00 0.00 45.33 4.34
74 75 2.681097 GCTGTAGCCTAGTGGAAAAGGG 60.681 54.545 0.00 0.00 33.17 3.95
75 76 2.633488 GCTGTAGCCTAGTGGAAAAGG 58.367 52.381 0.00 0.00 35.86 3.11
88 89 3.637229 TGGTATGAGAACTAGGCTGTAGC 59.363 47.826 0.00 0.00 41.14 3.58
89 90 5.133941 TCTGGTATGAGAACTAGGCTGTAG 58.866 45.833 0.00 0.00 0.00 2.74
90 91 5.125367 TCTGGTATGAGAACTAGGCTGTA 57.875 43.478 0.00 0.00 0.00 2.74
91 92 3.957497 CTCTGGTATGAGAACTAGGCTGT 59.043 47.826 0.00 0.00 36.23 4.40
92 93 3.243704 GCTCTGGTATGAGAACTAGGCTG 60.244 52.174 0.00 0.00 36.23 4.85
93 94 2.962421 GCTCTGGTATGAGAACTAGGCT 59.038 50.000 0.00 0.00 36.23 4.58
94 95 2.695666 TGCTCTGGTATGAGAACTAGGC 59.304 50.000 0.00 0.00 36.23 3.93
95 96 5.127845 TCTTTGCTCTGGTATGAGAACTAGG 59.872 44.000 0.00 0.00 36.23 3.02
96 97 6.096141 TCTCTTTGCTCTGGTATGAGAACTAG 59.904 42.308 0.00 0.00 36.23 2.57
97 98 5.952347 TCTCTTTGCTCTGGTATGAGAACTA 59.048 40.000 0.00 0.00 36.23 2.24
98 99 4.774726 TCTCTTTGCTCTGGTATGAGAACT 59.225 41.667 0.00 0.00 36.23 3.01
99 100 5.078411 TCTCTTTGCTCTGGTATGAGAAC 57.922 43.478 0.00 0.00 36.23 3.01
100 101 5.019470 TCTCTCTTTGCTCTGGTATGAGAA 58.981 41.667 0.00 0.00 36.23 2.87
101 102 4.604156 TCTCTCTTTGCTCTGGTATGAGA 58.396 43.478 0.00 0.00 36.23 3.27
102 103 4.998671 TCTCTCTTTGCTCTGGTATGAG 57.001 45.455 0.00 0.00 37.16 2.90
103 104 6.462207 GCTTATCTCTCTTTGCTCTGGTATGA 60.462 42.308 0.00 0.00 0.00 2.15
104 105 5.695816 GCTTATCTCTCTTTGCTCTGGTATG 59.304 44.000 0.00 0.00 0.00 2.39
105 106 5.365025 TGCTTATCTCTCTTTGCTCTGGTAT 59.635 40.000 0.00 0.00 0.00 2.73
106 107 4.711846 TGCTTATCTCTCTTTGCTCTGGTA 59.288 41.667 0.00 0.00 0.00 3.25
107 108 3.517100 TGCTTATCTCTCTTTGCTCTGGT 59.483 43.478 0.00 0.00 0.00 4.00
108 109 4.134379 TGCTTATCTCTCTTTGCTCTGG 57.866 45.455 0.00 0.00 0.00 3.86
109 110 6.680874 ATTTGCTTATCTCTCTTTGCTCTG 57.319 37.500 0.00 0.00 0.00 3.35
110 111 8.263640 TCTAATTTGCTTATCTCTCTTTGCTCT 58.736 33.333 0.00 0.00 0.00 4.09
111 112 8.430801 TCTAATTTGCTTATCTCTCTTTGCTC 57.569 34.615 0.00 0.00 0.00 4.26
112 113 7.012232 GCTCTAATTTGCTTATCTCTCTTTGCT 59.988 37.037 0.00 0.00 0.00 3.91
113 114 7.131565 GCTCTAATTTGCTTATCTCTCTTTGC 58.868 38.462 0.00 0.00 0.00 3.68
114 115 7.518052 CGGCTCTAATTTGCTTATCTCTCTTTG 60.518 40.741 0.00 0.00 0.00 2.77
115 116 6.481644 CGGCTCTAATTTGCTTATCTCTCTTT 59.518 38.462 0.00 0.00 0.00 2.52
116 117 5.988561 CGGCTCTAATTTGCTTATCTCTCTT 59.011 40.000 0.00 0.00 0.00 2.85
117 118 5.537188 CGGCTCTAATTTGCTTATCTCTCT 58.463 41.667 0.00 0.00 0.00 3.10
118 119 4.151512 GCGGCTCTAATTTGCTTATCTCTC 59.848 45.833 0.00 0.00 0.00 3.20
119 120 4.061596 GCGGCTCTAATTTGCTTATCTCT 58.938 43.478 0.00 0.00 0.00 3.10
120 121 3.809832 TGCGGCTCTAATTTGCTTATCTC 59.190 43.478 0.00 0.00 0.00 2.75
121 122 3.808728 TGCGGCTCTAATTTGCTTATCT 58.191 40.909 0.00 0.00 0.00 1.98
122 123 4.756084 ATGCGGCTCTAATTTGCTTATC 57.244 40.909 0.00 0.00 0.00 1.75
123 124 6.486657 TCTTTATGCGGCTCTAATTTGCTTAT 59.513 34.615 0.00 0.00 0.00 1.73
124 125 5.820423 TCTTTATGCGGCTCTAATTTGCTTA 59.180 36.000 0.00 0.00 0.00 3.09
125 126 4.640201 TCTTTATGCGGCTCTAATTTGCTT 59.360 37.500 0.00 0.00 0.00 3.91
126 127 4.199310 TCTTTATGCGGCTCTAATTTGCT 58.801 39.130 0.00 0.00 0.00 3.91
127 128 4.552166 TCTTTATGCGGCTCTAATTTGC 57.448 40.909 0.00 0.00 0.00 3.68
128 129 5.163663 TGGTTCTTTATGCGGCTCTAATTTG 60.164 40.000 0.00 0.00 0.00 2.32
129 130 4.947388 TGGTTCTTTATGCGGCTCTAATTT 59.053 37.500 0.00 0.00 0.00 1.82
130 131 4.523083 TGGTTCTTTATGCGGCTCTAATT 58.477 39.130 0.00 0.00 0.00 1.40
131 132 4.150897 TGGTTCTTTATGCGGCTCTAAT 57.849 40.909 0.00 0.00 0.00 1.73
132 133 3.620427 TGGTTCTTTATGCGGCTCTAA 57.380 42.857 0.00 0.00 0.00 2.10
133 134 3.055385 AGTTGGTTCTTTATGCGGCTCTA 60.055 43.478 0.00 0.00 0.00 2.43
134 135 2.084546 GTTGGTTCTTTATGCGGCTCT 58.915 47.619 0.00 0.00 0.00 4.09
135 136 2.084546 AGTTGGTTCTTTATGCGGCTC 58.915 47.619 0.00 0.00 0.00 4.70
136 137 2.200373 AGTTGGTTCTTTATGCGGCT 57.800 45.000 0.00 0.00 0.00 5.52
137 138 3.007635 ACTAGTTGGTTCTTTATGCGGC 58.992 45.455 0.00 0.00 0.00 6.53
138 139 5.416947 AGTACTAGTTGGTTCTTTATGCGG 58.583 41.667 0.00 0.00 0.00 5.69
139 140 7.256286 ACTAGTACTAGTTGGTTCTTTATGCG 58.744 38.462 26.61 1.56 43.35 4.73
191 192 9.971922 CCAATAACTTGTTCTCTTTTCTTGAAT 57.028 29.630 0.00 0.00 0.00 2.57
210 211 4.007659 ACTGAAATCACCGGACCAATAAC 58.992 43.478 9.46 0.00 0.00 1.89
228 229 4.572909 CACATCTTGAGATTGGACACTGA 58.427 43.478 0.00 0.00 31.21 3.41
265 321 3.026694 GGCAGTAGGGATTGAATTTGCT 58.973 45.455 0.00 0.00 0.00 3.91
311 367 4.207165 ACGGAACCAGCTAATGCATTTAT 58.793 39.130 18.75 0.85 42.74 1.40
345 401 2.806745 GCTAGCTGACGCCATGGAATAA 60.807 50.000 18.40 0.00 36.60 1.40
397 800 0.165944 CACACTTTGATCGAACGCCC 59.834 55.000 0.00 0.00 0.00 6.13
399 802 0.234625 TGCACACTTTGATCGAACGC 59.765 50.000 0.00 0.00 0.00 4.84
433 836 5.894393 TGTTGGGTGTAGATCCAAAAAGAAA 59.106 36.000 6.10 0.00 44.38 2.52
438 841 3.572255 GCTTGTTGGGTGTAGATCCAAAA 59.428 43.478 6.10 0.00 44.38 2.44
467 871 2.933878 AAGGTTGCCTTGTGTCGCGA 62.934 55.000 3.71 3.71 42.96 5.87
478 882 3.304458 CCTCGTTTTTACAGAAGGTTGCC 60.304 47.826 0.00 0.00 0.00 4.52
490 894 3.058777 GGTTCGCAACATCCTCGTTTTTA 60.059 43.478 2.28 0.00 0.00 1.52
493 897 0.872388 GGTTCGCAACATCCTCGTTT 59.128 50.000 2.28 0.00 0.00 3.60
516 920 3.113514 TTGCTGAAGGCGGGTGTCA 62.114 57.895 0.00 0.00 45.43 3.58
521 925 2.747855 GAGGTTGCTGAAGGCGGG 60.748 66.667 0.00 0.00 45.43 6.13
523 927 3.793144 GCGAGGTTGCTGAAGGCG 61.793 66.667 0.00 0.00 45.43 5.52
526 930 0.236711 CTGTTGCGAGGTTGCTGAAG 59.763 55.000 0.00 0.00 35.36 3.02
527 931 0.463654 ACTGTTGCGAGGTTGCTGAA 60.464 50.000 0.00 0.00 35.36 3.02
539 968 2.417243 GGGTTGCATTATCCACTGTTGC 60.417 50.000 0.00 0.00 0.00 4.17
545 974 2.088423 TCGTTGGGTTGCATTATCCAC 58.912 47.619 0.00 0.00 0.00 4.02
548 977 1.268032 CGCTCGTTGGGTTGCATTATC 60.268 52.381 0.00 0.00 0.00 1.75
551 980 2.953821 CGCTCGTTGGGTTGCATT 59.046 55.556 0.00 0.00 0.00 3.56
570 999 2.607282 CGTTATATGTCTCGGTGGAGGC 60.607 54.545 0.00 0.00 45.32 4.70
582 1011 1.479323 ACAGTGGTCGGCGTTATATGT 59.521 47.619 6.85 5.39 0.00 2.29
588 1017 2.660552 CGAACAGTGGTCGGCGTT 60.661 61.111 22.98 0.00 0.00 4.84
595 1024 4.277174 TGCAAATGATTAACGAACAGTGGT 59.723 37.500 0.00 0.00 0.00 4.16
616 1045 0.871163 ACGCAAATGTGTGCAAGTGC 60.871 50.000 0.00 0.00 45.19 4.40
674 1110 2.274232 TAATGGAGGCACCGACGACG 62.274 60.000 0.00 0.00 42.61 5.12
692 1128 4.693566 GTGGTGTAGTTGCAAAGTAGCATA 59.306 41.667 0.00 0.00 45.19 3.14
706 1143 1.192146 ATCAGTGGCGGTGGTGTAGT 61.192 55.000 0.00 0.00 0.00 2.73
722 1159 4.764679 GTGTTGTAAAGCACCATCATCA 57.235 40.909 0.00 0.00 0.00 3.07
730 1170 0.383860 GCGACGGTGTTGTAAAGCAC 60.384 55.000 0.00 0.00 35.07 4.40
762 1202 7.936584 TGAAATTGTGGAACTCTTTAAATCGT 58.063 30.769 0.00 0.00 38.04 3.73
786 1241 3.937706 TGGGTGTTTTCTGTTTGCAATTG 59.062 39.130 0.00 0.00 0.00 2.32
787 1242 4.213564 TGGGTGTTTTCTGTTTGCAATT 57.786 36.364 0.00 0.00 0.00 2.32
841 1513 3.056035 AGGTTACACAGATCCGGAAGTTC 60.056 47.826 9.01 0.62 0.00 3.01
848 1520 2.492088 TGACAGAGGTTACACAGATCCG 59.508 50.000 0.00 0.00 0.00 4.18
876 1548 1.804748 GGTTAGTTCGAAAGCCACAGG 59.195 52.381 0.00 0.00 0.00 4.00
877 1549 2.480419 CAGGTTAGTTCGAAAGCCACAG 59.520 50.000 0.00 0.00 0.00 3.66
878 1550 2.489971 CAGGTTAGTTCGAAAGCCACA 58.510 47.619 0.00 0.00 0.00 4.17
879 1551 1.804748 CCAGGTTAGTTCGAAAGCCAC 59.195 52.381 0.00 0.00 0.00 5.01
880 1552 1.418637 ACCAGGTTAGTTCGAAAGCCA 59.581 47.619 0.00 0.00 0.00 4.75
881 1553 2.180432 ACCAGGTTAGTTCGAAAGCC 57.820 50.000 0.00 0.00 0.00 4.35
882 1554 3.135994 TCAACCAGGTTAGTTCGAAAGC 58.864 45.455 3.89 0.00 0.00 3.51
884 1556 3.562557 GCTTCAACCAGGTTAGTTCGAAA 59.437 43.478 3.89 0.00 0.00 3.46
887 1559 2.767505 AGCTTCAACCAGGTTAGTTCG 58.232 47.619 3.89 0.00 0.00 3.95
915 1587 3.381590 GCTCAACCAGGTCAGTTCTTTTT 59.618 43.478 0.00 0.00 0.00 1.94
916 1588 2.952310 GCTCAACCAGGTCAGTTCTTTT 59.048 45.455 0.00 0.00 0.00 2.27
917 1589 2.576615 GCTCAACCAGGTCAGTTCTTT 58.423 47.619 0.00 0.00 0.00 2.52
918 1590 1.202818 GGCTCAACCAGGTCAGTTCTT 60.203 52.381 0.00 0.00 38.86 2.52
919 1591 0.398318 GGCTCAACCAGGTCAGTTCT 59.602 55.000 0.00 0.00 38.86 3.01
945 1921 3.141488 CGAGACGGTGGAGGGGAG 61.141 72.222 0.00 0.00 0.00 4.30
1188 2195 2.688666 TGGAGGAGGCCGAGCATT 60.689 61.111 0.00 0.00 0.00 3.56
1599 2725 9.461312 GAATATTGTATGCATCCCATTAACCTA 57.539 33.333 0.19 0.00 35.34 3.08
1714 2861 0.321122 CTGAACACAGTCAGGGAGCC 60.321 60.000 0.00 0.00 41.21 4.70
1715 2862 3.223661 CTGAACACAGTCAGGGAGC 57.776 57.895 0.00 0.00 41.21 4.70
1743 2905 3.233980 AGGCAGTCGCAGTGGACA 61.234 61.111 12.45 0.00 41.24 4.02
1744 2906 2.154798 TACAGGCAGTCGCAGTGGAC 62.155 60.000 4.17 4.17 41.24 4.02
1745 2907 1.257750 ATACAGGCAGTCGCAGTGGA 61.258 55.000 0.00 0.00 41.24 4.02
1786 2948 1.607225 TGGATTACTCCCAGCCCATT 58.393 50.000 0.00 0.00 41.29 3.16
1918 3083 5.168569 CACTCTATTACTTTCGTCCAAGCA 58.831 41.667 0.00 0.00 0.00 3.91
1926 3091 5.744345 CACCACTAGCACTCTATTACTTTCG 59.256 44.000 0.00 0.00 0.00 3.46
1999 3164 1.456296 TGCAGCTCAATTGCGAAGAT 58.544 45.000 0.00 0.00 44.40 2.40
2094 3265 2.358125 TGGTTGCGTCGGGACATG 60.358 61.111 0.00 0.00 0.00 3.21
2098 3269 2.888464 TTTTGGTGGTTGCGTCGGGA 62.888 55.000 0.00 0.00 0.00 5.14
2104 3283 2.126467 CAACAGATTTTGGTGGTTGCG 58.874 47.619 0.00 0.00 40.98 4.85
2193 3385 2.911928 TGGTCGGCCAGTTGTTGA 59.088 55.556 3.51 0.00 40.46 3.18
2304 3496 1.459539 TAGCTCGGAATGGGGAGGG 60.460 63.158 0.00 0.00 0.00 4.30
2342 3535 6.136541 AGTTCTTTTTCTCCACAATCACAC 57.863 37.500 0.00 0.00 0.00 3.82
2374 3569 7.391554 TGTTGCTAATCTTAAAGAGCACTGAAT 59.608 33.333 0.00 0.00 44.28 2.57
2428 4030 4.066646 TCATCTCCTGAACAAAACGACA 57.933 40.909 0.00 0.00 0.00 4.35
2473 4081 2.105993 ACCACTTCGTCCTAAAAGGCTT 59.894 45.455 0.00 0.00 34.61 4.35
2588 5201 7.245419 TGCAAACTTCAAAGAAAATAAAGCC 57.755 32.000 0.00 0.00 0.00 4.35
2645 5258 4.002797 GGCAGTGCCCTGTTTAGG 57.997 61.111 24.53 0.00 44.06 2.69
2740 5404 3.287222 CAAACAGTTCCTTCCAAGACCA 58.713 45.455 0.00 0.00 0.00 4.02
2849 5679 6.722301 AGCATTTTCAACATCATCGAGTATG 58.278 36.000 7.94 7.94 36.88 2.39
2853 5683 6.550371 GAAAGCATTTTCAACATCATCGAG 57.450 37.500 0.00 0.00 39.27 4.04
2997 5843 6.723131 GATCAGTAAAGTAGTGGTCCAAAC 57.277 41.667 0.00 0.00 33.98 2.93
3004 5850 6.231211 AGTGTTTGGATCAGTAAAGTAGTGG 58.769 40.000 0.00 0.00 0.00 4.00
3046 5892 3.805497 GGTTCATCCCCGGTCCCC 61.805 72.222 0.00 0.00 0.00 4.81
3051 5897 1.077716 GGACAAGGTTCATCCCCGG 60.078 63.158 0.00 0.00 36.75 5.73
3052 5898 1.449601 CGGACAAGGTTCATCCCCG 60.450 63.158 0.00 0.00 36.75 5.73
3053 5899 1.077716 CCGGACAAGGTTCATCCCC 60.078 63.158 0.00 0.00 36.75 4.81
3054 5900 1.683441 ACCGGACAAGGTTCATCCC 59.317 57.895 9.46 0.00 43.00 3.85
3069 5915 1.376295 CCCCCAACTACCGAAACCG 60.376 63.158 0.00 0.00 0.00 4.44
3070 5916 0.607217 CACCCCCAACTACCGAAACC 60.607 60.000 0.00 0.00 0.00 3.27
3071 5917 1.239296 GCACCCCCAACTACCGAAAC 61.239 60.000 0.00 0.00 0.00 2.78
3072 5918 1.073548 GCACCCCCAACTACCGAAA 59.926 57.895 0.00 0.00 0.00 3.46
3073 5919 1.706995 TTGCACCCCCAACTACCGAA 61.707 55.000 0.00 0.00 0.00 4.30
3074 5920 2.119484 CTTGCACCCCCAACTACCGA 62.119 60.000 0.00 0.00 0.00 4.69
3075 5921 1.674322 CTTGCACCCCCAACTACCG 60.674 63.158 0.00 0.00 0.00 4.02
3076 5922 0.178973 AACTTGCACCCCCAACTACC 60.179 55.000 0.00 0.00 0.00 3.18
3077 5923 0.958822 CAACTTGCACCCCCAACTAC 59.041 55.000 0.00 0.00 0.00 2.73
3078 5924 0.553819 ACAACTTGCACCCCCAACTA 59.446 50.000 0.00 0.00 0.00 2.24
3079 5925 0.755327 GACAACTTGCACCCCCAACT 60.755 55.000 0.00 0.00 0.00 3.16
3080 5926 1.739667 GACAACTTGCACCCCCAAC 59.260 57.895 0.00 0.00 0.00 3.77
3081 5927 1.456705 GGACAACTTGCACCCCCAA 60.457 57.895 0.00 0.00 0.00 4.12
3082 5928 2.197324 GGACAACTTGCACCCCCA 59.803 61.111 0.00 0.00 0.00 4.96
3083 5929 2.983592 CGGACAACTTGCACCCCC 60.984 66.667 0.00 0.00 0.00 5.40
3084 5930 2.983592 CCGGACAACTTGCACCCC 60.984 66.667 0.00 0.00 0.00 4.95
3085 5931 1.388837 AAACCGGACAACTTGCACCC 61.389 55.000 9.46 0.00 0.00 4.61
3086 5932 0.458260 AAAACCGGACAACTTGCACC 59.542 50.000 9.46 0.00 0.00 5.01
3087 5933 1.133407 TCAAAACCGGACAACTTGCAC 59.867 47.619 9.46 0.00 0.00 4.57
3088 5934 1.464734 TCAAAACCGGACAACTTGCA 58.535 45.000 9.46 0.00 0.00 4.08
3089 5935 2.159296 ACTTCAAAACCGGACAACTTGC 60.159 45.455 9.46 0.00 0.00 4.01
3090 5936 3.775661 ACTTCAAAACCGGACAACTTG 57.224 42.857 9.46 3.91 0.00 3.16
3091 5937 3.759618 TCAACTTCAAAACCGGACAACTT 59.240 39.130 9.46 0.00 0.00 2.66
3092 5938 3.349022 TCAACTTCAAAACCGGACAACT 58.651 40.909 9.46 0.00 0.00 3.16
3093 5939 3.488553 CCTCAACTTCAAAACCGGACAAC 60.489 47.826 9.46 0.00 0.00 3.32
3094 5940 2.685897 CCTCAACTTCAAAACCGGACAA 59.314 45.455 9.46 0.00 0.00 3.18
3095 5941 2.294074 CCTCAACTTCAAAACCGGACA 58.706 47.619 9.46 0.00 0.00 4.02
3096 5942 1.607148 CCCTCAACTTCAAAACCGGAC 59.393 52.381 9.46 0.00 0.00 4.79
3097 5943 1.477923 CCCCTCAACTTCAAAACCGGA 60.478 52.381 9.46 0.00 0.00 5.14
3098 5944 0.958822 CCCCTCAACTTCAAAACCGG 59.041 55.000 0.00 0.00 0.00 5.28
3099 5945 0.313987 GCCCCTCAACTTCAAAACCG 59.686 55.000 0.00 0.00 0.00 4.44
3100 5946 0.679505 GGCCCCTCAACTTCAAAACC 59.320 55.000 0.00 0.00 0.00 3.27
3101 5947 1.408969 TGGCCCCTCAACTTCAAAAC 58.591 50.000 0.00 0.00 0.00 2.43
3102 5948 2.166907 TTGGCCCCTCAACTTCAAAA 57.833 45.000 0.00 0.00 0.00 2.44
3103 5949 2.166907 TTTGGCCCCTCAACTTCAAA 57.833 45.000 0.00 0.00 0.00 2.69
3104 5950 2.158325 AGATTTGGCCCCTCAACTTCAA 60.158 45.455 0.00 0.00 0.00 2.69
3105 5951 1.428912 AGATTTGGCCCCTCAACTTCA 59.571 47.619 0.00 0.00 0.00 3.02
3106 5952 2.222227 AGATTTGGCCCCTCAACTTC 57.778 50.000 0.00 0.00 0.00 3.01
3107 5953 2.919602 TCTAGATTTGGCCCCTCAACTT 59.080 45.455 0.00 0.00 0.00 2.66
3108 5954 2.239907 GTCTAGATTTGGCCCCTCAACT 59.760 50.000 0.00 0.00 0.00 3.16
3109 5955 2.239907 AGTCTAGATTTGGCCCCTCAAC 59.760 50.000 0.00 0.00 0.00 3.18
3110 5956 2.505819 GAGTCTAGATTTGGCCCCTCAA 59.494 50.000 0.00 0.00 0.00 3.02
3111 5957 2.119495 GAGTCTAGATTTGGCCCCTCA 58.881 52.381 0.00 0.00 0.00 3.86
3112 5958 1.418264 GGAGTCTAGATTTGGCCCCTC 59.582 57.143 0.00 0.00 0.00 4.30
3113 5959 1.274416 TGGAGTCTAGATTTGGCCCCT 60.274 52.381 0.00 0.00 0.00 4.79
3114 5960 1.134068 GTGGAGTCTAGATTTGGCCCC 60.134 57.143 0.00 0.00 0.00 5.80
3115 5961 1.134068 GGTGGAGTCTAGATTTGGCCC 60.134 57.143 0.00 0.00 0.00 5.80
3116 5962 1.559682 TGGTGGAGTCTAGATTTGGCC 59.440 52.381 0.00 0.00 0.00 5.36
3117 5963 3.350219 TTGGTGGAGTCTAGATTTGGC 57.650 47.619 0.00 0.00 0.00 4.52
3118 5964 5.316987 ACTTTTGGTGGAGTCTAGATTTGG 58.683 41.667 0.00 0.00 0.00 3.28
3119 5965 6.486657 TCAACTTTTGGTGGAGTCTAGATTTG 59.513 38.462 0.00 0.00 37.81 2.32
3120 5966 6.601332 TCAACTTTTGGTGGAGTCTAGATTT 58.399 36.000 0.00 0.00 37.81 2.17
3121 5967 6.187727 TCAACTTTTGGTGGAGTCTAGATT 57.812 37.500 0.00 0.00 37.81 2.40
3122 5968 5.280215 CCTCAACTTTTGGTGGAGTCTAGAT 60.280 44.000 0.00 0.00 42.89 1.98
3123 5969 4.040461 CCTCAACTTTTGGTGGAGTCTAGA 59.960 45.833 0.00 0.00 42.89 2.43
3124 5970 4.319177 CCTCAACTTTTGGTGGAGTCTAG 58.681 47.826 0.00 0.00 42.89 2.43
3125 5971 3.072476 CCCTCAACTTTTGGTGGAGTCTA 59.928 47.826 0.00 0.00 42.89 2.59
3126 5972 2.158608 CCCTCAACTTTTGGTGGAGTCT 60.159 50.000 0.00 0.00 42.89 3.24
3127 5973 2.158667 TCCCTCAACTTTTGGTGGAGTC 60.159 50.000 0.00 0.00 42.89 3.36
3128 5974 1.850345 TCCCTCAACTTTTGGTGGAGT 59.150 47.619 0.00 0.00 42.89 3.85
3129 5975 2.230660 GTCCCTCAACTTTTGGTGGAG 58.769 52.381 0.00 0.00 43.79 3.86
3130 5976 1.476110 CGTCCCTCAACTTTTGGTGGA 60.476 52.381 0.00 0.00 37.81 4.02
3131 5977 0.951558 CGTCCCTCAACTTTTGGTGG 59.048 55.000 0.00 0.00 37.81 4.61
3132 5978 1.961793 TCGTCCCTCAACTTTTGGTG 58.038 50.000 0.00 0.00 38.81 4.17
3133 5979 2.721425 TTCGTCCCTCAACTTTTGGT 57.279 45.000 0.00 0.00 0.00 3.67
3134 5980 3.380320 ACTTTTCGTCCCTCAACTTTTGG 59.620 43.478 0.00 0.00 0.00 3.28
3135 5981 4.632538 ACTTTTCGTCCCTCAACTTTTG 57.367 40.909 0.00 0.00 0.00 2.44
3136 5982 7.222161 AGTATACTTTTCGTCCCTCAACTTTT 58.778 34.615 0.00 0.00 0.00 2.27
3137 5983 6.766429 AGTATACTTTTCGTCCCTCAACTTT 58.234 36.000 0.00 0.00 0.00 2.66
3138 5984 6.356186 AGTATACTTTTCGTCCCTCAACTT 57.644 37.500 0.00 0.00 0.00 2.66
3139 5985 5.997384 AGTATACTTTTCGTCCCTCAACT 57.003 39.130 0.00 0.00 0.00 3.16
3185 6256 8.814038 ACTCATAAAGAAATAGCAACAGGAAT 57.186 30.769 0.00 0.00 0.00 3.01
3442 6728 7.148557 GGCGATTTCAGAACTTTATATCTAGCC 60.149 40.741 0.00 0.00 0.00 3.93
3495 6808 7.750903 GGCAACATGAAAATAGAGTAGAAACAC 59.249 37.037 0.00 0.00 0.00 3.32
3590 7001 3.421919 TGCAAAGACTGTCATCATGGA 57.578 42.857 10.88 1.84 0.00 3.41
3671 7127 5.499004 AGAAAGCTACACCCATGTAAGAA 57.501 39.130 0.00 0.00 40.84 2.52
3694 7151 7.995488 GGGCAGCTGAATACCTGATATATAAAT 59.005 37.037 20.43 0.00 0.00 1.40
3719 7176 6.723298 AGACTACCAGATTGAGATGTTAGG 57.277 41.667 0.00 0.00 0.00 2.69
3868 7336 9.413048 GCATCATAGAATCTTACTTACTACACC 57.587 37.037 0.00 0.00 0.00 4.16
3873 7341 7.659390 GCCTTGCATCATAGAATCTTACTTACT 59.341 37.037 0.00 0.00 0.00 2.24
3875 7343 7.658982 CAGCCTTGCATCATAGAATCTTACTTA 59.341 37.037 0.00 0.00 0.00 2.24
3878 7346 6.238610 CAGCCTTGCATCATAGAATCTTAC 57.761 41.667 0.00 0.00 0.00 2.34
3958 7434 8.791327 AACATCATTGTACATGAACTATCACA 57.209 30.769 0.00 0.00 34.77 3.58
4076 7568 5.907866 TTTTTCTTTGTTTTCCCTCTCGT 57.092 34.783 0.00 0.00 0.00 4.18
4124 7616 8.479313 AAATTGAACAGAAGGTTGTTTTTCTC 57.521 30.769 0.00 0.00 41.15 2.87
4145 7640 4.576053 GCCTCCAGTTTTTCTGCAAAAATT 59.424 37.500 0.00 0.00 42.22 1.82
4160 7655 0.846427 TTCCCATTCCAGCCTCCAGT 60.846 55.000 0.00 0.00 0.00 4.00
4177 7672 1.755380 ACTATGTACAGCTCGGGGTTC 59.245 52.381 0.33 0.00 0.00 3.62
4294 7797 2.041976 CCGACTCTGATGGCGGTAT 58.958 57.895 11.67 0.00 38.99 2.73
4398 7930 2.887152 GCTTGACCTGAGACACCAAAAT 59.113 45.455 0.00 0.00 0.00 1.82
4420 7952 5.163513 CCATTGAAAATAACACAGCAGGTC 58.836 41.667 0.00 0.00 0.00 3.85
4421 7953 4.588528 ACCATTGAAAATAACACAGCAGGT 59.411 37.500 0.00 0.00 0.00 4.00
4462 7994 8.822652 AAACATCTTCAATTCCTTAAAAGCAG 57.177 30.769 0.00 0.00 0.00 4.24
4480 8012 3.181445 TGGTCACTGCCACTAAAACATCT 60.181 43.478 0.00 0.00 32.81 2.90
4491 8023 1.675714 CGCTTTAGATGGTCACTGCCA 60.676 52.381 0.00 0.00 43.48 4.92
4525 8057 4.247380 GGAGAGCCATGAGCCCCG 62.247 72.222 0.00 0.00 45.47 5.73
4584 8117 3.944087 AGCACTAACTTGTCCCATCTTC 58.056 45.455 0.00 0.00 0.00 2.87
4610 8143 4.021102 AGGTATGGTGTGAAAGAACTGG 57.979 45.455 0.00 0.00 0.00 4.00
4650 8183 3.524541 TCATGATTCATGAGTCACACGG 58.475 45.455 21.67 12.29 44.60 4.94
4659 8192 8.457775 AGGGTTTCCACAAATCATGATTCATGA 61.458 37.037 26.93 26.93 44.07 3.07
4660 8193 5.813672 GGGTTTCCACAAATCATGATTCATG 59.186 40.000 20.95 19.52 42.60 3.07
4661 8194 5.722923 AGGGTTTCCACAAATCATGATTCAT 59.277 36.000 20.95 9.68 34.83 2.57
4665 8198 5.797051 CAAAGGGTTTCCACAAATCATGAT 58.203 37.500 1.18 1.18 34.83 2.45
4690 8223 4.401022 AGCAGGATTTGTCACTGATGAAA 58.599 39.130 0.00 0.00 36.31 2.69
4700 8233 4.464069 AGAGACACTAGCAGGATTTGTC 57.536 45.455 0.00 0.00 37.45 3.18
4701 8234 4.899352 AAGAGACACTAGCAGGATTTGT 57.101 40.909 0.00 0.00 0.00 2.83
4702 8235 6.402222 AGTTAAGAGACACTAGCAGGATTTG 58.598 40.000 0.00 0.00 0.00 2.32
4703 8236 6.613153 AGTTAAGAGACACTAGCAGGATTT 57.387 37.500 0.00 0.00 0.00 2.17
4704 8237 6.211584 TCAAGTTAAGAGACACTAGCAGGATT 59.788 38.462 0.00 0.00 0.00 3.01
4705 8238 5.717178 TCAAGTTAAGAGACACTAGCAGGAT 59.283 40.000 0.00 0.00 0.00 3.24
4706 8239 5.077564 TCAAGTTAAGAGACACTAGCAGGA 58.922 41.667 0.00 0.00 0.00 3.86
4707 8240 5.392767 TCAAGTTAAGAGACACTAGCAGG 57.607 43.478 0.00 0.00 0.00 4.85
4708 8241 7.897575 AATTCAAGTTAAGAGACACTAGCAG 57.102 36.000 0.00 0.00 0.00 4.24
4709 8242 8.677148 AAAATTCAAGTTAAGAGACACTAGCA 57.323 30.769 0.00 0.00 0.00 3.49
4710 8243 9.600646 GAAAAATTCAAGTTAAGAGACACTAGC 57.399 33.333 0.00 0.00 0.00 3.42
4712 8245 9.847224 AGGAAAAATTCAAGTTAAGAGACACTA 57.153 29.630 0.00 0.00 0.00 2.74
4713 8246 8.624776 CAGGAAAAATTCAAGTTAAGAGACACT 58.375 33.333 0.00 0.00 0.00 3.55
4714 8247 8.621286 TCAGGAAAAATTCAAGTTAAGAGACAC 58.379 33.333 0.00 0.00 0.00 3.67
4715 8248 8.621286 GTCAGGAAAAATTCAAGTTAAGAGACA 58.379 33.333 0.00 0.00 0.00 3.41
4716 8249 8.621286 TGTCAGGAAAAATTCAAGTTAAGAGAC 58.379 33.333 0.00 0.00 0.00 3.36
4717 8250 8.746052 TGTCAGGAAAAATTCAAGTTAAGAGA 57.254 30.769 0.00 0.00 0.00 3.10
4718 8251 9.237846 GTTGTCAGGAAAAATTCAAGTTAAGAG 57.762 33.333 0.00 0.00 0.00 2.85
4719 8252 8.744652 TGTTGTCAGGAAAAATTCAAGTTAAGA 58.255 29.630 0.00 0.00 0.00 2.10
4720 8253 8.925161 TGTTGTCAGGAAAAATTCAAGTTAAG 57.075 30.769 0.00 0.00 0.00 1.85
4721 8254 9.712305 TTTGTTGTCAGGAAAAATTCAAGTTAA 57.288 25.926 0.00 0.00 0.00 2.01
4722 8255 9.712305 TTTTGTTGTCAGGAAAAATTCAAGTTA 57.288 25.926 0.00 0.00 0.00 2.24
4723 8256 8.614469 TTTTGTTGTCAGGAAAAATTCAAGTT 57.386 26.923 0.00 0.00 0.00 2.66
4724 8257 8.614469 TTTTTGTTGTCAGGAAAAATTCAAGT 57.386 26.923 0.00 0.00 0.00 3.16
4725 8258 8.720562 ACTTTTTGTTGTCAGGAAAAATTCAAG 58.279 29.630 0.00 0.00 30.38 3.02
4726 8259 8.614469 ACTTTTTGTTGTCAGGAAAAATTCAA 57.386 26.923 0.00 0.00 30.38 2.69
4727 8260 8.614469 AACTTTTTGTTGTCAGGAAAAATTCA 57.386 26.923 0.00 0.00 37.52 2.57
4742 8275 4.264460 TGGAACTGCACAACTTTTTGTT 57.736 36.364 0.00 0.00 43.89 2.83
4744 8277 3.062504 GCTTGGAACTGCACAACTTTTTG 59.937 43.478 0.00 0.00 38.83 2.44
4745 8278 3.261580 GCTTGGAACTGCACAACTTTTT 58.738 40.909 0.00 0.00 0.00 1.94
4746 8279 2.418609 GGCTTGGAACTGCACAACTTTT 60.419 45.455 0.00 0.00 0.00 2.27
4747 8280 1.136891 GGCTTGGAACTGCACAACTTT 59.863 47.619 0.00 0.00 0.00 2.66
4748 8281 0.746659 GGCTTGGAACTGCACAACTT 59.253 50.000 0.00 0.00 0.00 2.66
4749 8282 0.106519 AGGCTTGGAACTGCACAACT 60.107 50.000 0.00 0.00 0.00 3.16
4750 8283 0.746659 AAGGCTTGGAACTGCACAAC 59.253 50.000 0.00 0.00 0.00 3.32
4751 8284 1.032014 GAAGGCTTGGAACTGCACAA 58.968 50.000 3.46 0.00 0.00 3.33
4752 8285 0.183492 AGAAGGCTTGGAACTGCACA 59.817 50.000 3.46 0.00 0.00 4.57
4753 8286 1.322442 AAGAAGGCTTGGAACTGCAC 58.678 50.000 3.46 0.00 31.83 4.57
4754 8287 2.106511 AGTAAGAAGGCTTGGAACTGCA 59.893 45.455 3.46 0.00 35.56 4.41
4755 8288 2.784347 AGTAAGAAGGCTTGGAACTGC 58.216 47.619 3.46 0.00 35.56 4.40
4756 8289 4.580580 ACAAAGTAAGAAGGCTTGGAACTG 59.419 41.667 3.46 0.00 35.56 3.16
4757 8290 4.580580 CACAAAGTAAGAAGGCTTGGAACT 59.419 41.667 3.46 1.53 35.56 3.01
4758 8291 4.793028 GCACAAAGTAAGAAGGCTTGGAAC 60.793 45.833 3.46 0.00 35.56 3.62
4759 8292 3.317993 GCACAAAGTAAGAAGGCTTGGAA 59.682 43.478 3.46 0.00 35.56 3.53
4760 8293 2.884639 GCACAAAGTAAGAAGGCTTGGA 59.115 45.455 3.46 0.00 35.56 3.53
4761 8294 2.622942 TGCACAAAGTAAGAAGGCTTGG 59.377 45.455 3.46 0.00 35.56 3.61
4762 8295 3.066621 TGTGCACAAAGTAAGAAGGCTTG 59.933 43.478 19.28 0.00 35.56 4.01
4763 8296 3.287222 TGTGCACAAAGTAAGAAGGCTT 58.713 40.909 19.28 0.00 38.15 4.35
4764 8297 2.930950 TGTGCACAAAGTAAGAAGGCT 58.069 42.857 19.28 0.00 0.00 4.58
4765 8298 3.923017 ATGTGCACAAAGTAAGAAGGC 57.077 42.857 25.72 0.00 0.00 4.35
4766 8299 4.974591 GCTATGTGCACAAAGTAAGAAGG 58.025 43.478 25.72 0.93 42.31 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.