Multiple sequence alignment - TraesCS1B01G042000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G042000 chr1B 100.000 6426 0 0 1 6426 22026702 22020277 0.000000e+00 11867
1 TraesCS1B01G042000 chr1B 85.714 1225 119 29 5243 6426 22874300 22875509 0.000000e+00 1242
2 TraesCS1B01G042000 chr1B 88.107 1009 83 14 5243 6220 22868645 22869647 0.000000e+00 1164
3 TraesCS1B01G042000 chr1B 88.008 1009 84 14 5243 6220 22872886 22873888 0.000000e+00 1158
4 TraesCS1B01G042000 chr1B 87.909 1009 84 15 5243 6220 22865818 22866819 0.000000e+00 1153
5 TraesCS1B01G042000 chr1B 87.909 1009 85 14 5243 6220 22867231 22868233 0.000000e+00 1153
6 TraesCS1B01G042000 chr1B 87.909 1009 85 14 5243 6220 22870059 22871061 0.000000e+00 1153
7 TraesCS1B01G042000 chr1B 87.810 1009 86 14 5243 6220 22871472 22872474 0.000000e+00 1147
8 TraesCS1B01G042000 chr1B 84.449 1016 110 19 4041 5026 22901587 22902584 0.000000e+00 957
9 TraesCS1B01G042000 chr1B 82.017 595 67 20 5858 6426 24141492 24142072 2.710000e-128 470
10 TraesCS1B01G042000 chr1B 91.288 264 22 1 624 887 534639997 534640259 6.130000e-95 359
11 TraesCS1B01G042000 chr1B 87.562 201 24 1 399 598 22038886 22038686 1.390000e-56 231
12 TraesCS1B01G042000 chr1A 88.661 3457 247 59 886 4234 16432265 16435684 0.000000e+00 4078
13 TraesCS1B01G042000 chr1A 90.490 1388 85 17 4194 5580 16435691 16437032 0.000000e+00 1788
14 TraesCS1B01G042000 chr1A 84.639 638 52 23 5688 6286 16437143 16437773 1.540000e-165 593
15 TraesCS1B01G042000 chr1D 96.909 2135 53 4 1573 3702 15359938 15362064 0.000000e+00 3565
16 TraesCS1B01G042000 chr1D 94.578 2250 94 18 3698 5944 15362185 15364409 0.000000e+00 3454
17 TraesCS1B01G042000 chr1D 90.582 722 26 15 886 1575 15359184 15359895 0.000000e+00 918
18 TraesCS1B01G042000 chr1D 94.021 485 28 1 5940 6424 15374042 15374525 0.000000e+00 734
19 TraesCS1B01G042000 chr1D 86.804 629 40 22 1349 1970 42320022 42320614 0.000000e+00 662
20 TraesCS1B01G042000 chr1D 89.938 487 18 13 1118 1575 368917961 368918445 3.320000e-167 599
21 TraesCS1B01G042000 chr1D 89.163 406 29 9 1573 1970 428762802 428763200 5.790000e-135 492
22 TraesCS1B01G042000 chr1D 88.916 406 30 9 1573 1970 394220406 394220008 2.690000e-133 486
23 TraesCS1B01G042000 chr1D 88.670 406 31 11 1573 1970 368918488 368918886 1.250000e-131 481
24 TraesCS1B01G042000 chr1D 88.177 406 33 11 1573 1970 266859812 266859414 2.710000e-128 470
25 TraesCS1B01G042000 chr1D 96.053 228 8 1 1349 1575 428762532 428762759 2.830000e-98 370
26 TraesCS1B01G042000 chr1D 93.981 216 12 1 399 614 15345123 15345337 6.210000e-85 326
27 TraesCS1B01G042000 chr1D 89.286 224 23 1 1 223 15344545 15344768 4.910000e-71 279
28 TraesCS1B01G042000 chr1D 85.128 195 15 5 222 406 15344896 15345086 3.060000e-43 187
29 TraesCS1B01G042000 chrUn 89.954 657 53 8 5243 5888 398484385 398483731 0.000000e+00 835
30 TraesCS1B01G042000 chrUn 90.674 579 42 7 5243 5810 407306470 407307047 0.000000e+00 760
31 TraesCS1B01G042000 chrUn 84.439 392 36 11 5849 6220 398485183 398484797 4.740000e-96 363
32 TraesCS1B01G042000 chrUn 84.211 380 35 11 5861 6220 407305684 407306058 4.770000e-91 346
33 TraesCS1B01G042000 chr6D 90.835 491 15 13 1114 1575 55252089 55251600 1.180000e-176 630
34 TraesCS1B01G042000 chr6D 90.283 494 15 14 1114 1575 335167608 335167116 3.290000e-172 616
35 TraesCS1B01G042000 chr6D 89.409 406 28 11 1573 1970 55251557 55251159 1.240000e-136 497
36 TraesCS1B01G042000 chr6D 88.916 406 30 11 1573 1970 335167073 335166675 2.690000e-133 486
37 TraesCS1B01G042000 chr3D 89.744 507 24 15 1096 1575 8767202 8766697 1.970000e-174 623
38 TraesCS1B01G042000 chr3D 88.916 406 30 9 1573 1970 490680787 490680389 2.690000e-133 486
39 TraesCS1B01G042000 chr3D 86.029 136 19 0 3428 3563 611146542 611146407 5.190000e-31 147
40 TraesCS1B01G042000 chr4D 89.817 491 20 14 1114 1575 272818863 272818374 2.560000e-168 603
41 TraesCS1B01G042000 chr4D 88.916 406 30 9 1573 1970 272818331 272817933 2.690000e-133 486
42 TraesCS1B01G042000 chr4B 91.726 423 33 2 1474 1894 219354796 219354374 2.580000e-163 586
43 TraesCS1B01G042000 chr7D 89.409 406 27 12 1573 1970 429092406 429092803 1.240000e-136 497
44 TraesCS1B01G042000 chr2D 89.409 406 28 11 1573 1970 465781807 465781409 1.240000e-136 497
45 TraesCS1B01G042000 chr3B 91.429 280 20 4 624 901 13367199 13367476 1.310000e-101 381
46 TraesCS1B01G042000 chr3A 91.698 265 22 0 623 887 742361449 742361185 1.020000e-97 368
47 TraesCS1B01G042000 chr3A 89.888 267 27 0 621 887 492706694 492706428 1.720000e-90 344
48 TraesCS1B01G042000 chr2B 91.144 271 24 0 617 887 501689212 501688942 1.020000e-97 368
49 TraesCS1B01G042000 chr2B 91.386 267 23 0 624 890 763007640 763007374 3.660000e-97 366
50 TraesCS1B01G042000 chr5B 90.909 264 24 0 624 887 401657101 401657364 7.920000e-94 355
51 TraesCS1B01G042000 chr7B 90.152 264 26 0 624 887 360877788 360877525 1.720000e-90 344
52 TraesCS1B01G042000 chr2A 89.888 267 27 0 621 887 252088721 252088987 1.720000e-90 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G042000 chr1B 22020277 22026702 6425 True 11867.000000 11867 100.000000 1 6426 1 chr1B.!!$R1 6425
1 TraesCS1B01G042000 chr1B 22865818 22875509 9691 False 1167.142857 1242 87.623714 5243 6426 7 chr1B.!!$F4 1183
2 TraesCS1B01G042000 chr1B 22901587 22902584 997 False 957.000000 957 84.449000 4041 5026 1 chr1B.!!$F1 985
3 TraesCS1B01G042000 chr1B 24141492 24142072 580 False 470.000000 470 82.017000 5858 6426 1 chr1B.!!$F2 568
4 TraesCS1B01G042000 chr1A 16432265 16437773 5508 False 2153.000000 4078 87.930000 886 6286 3 chr1A.!!$F1 5400
5 TraesCS1B01G042000 chr1D 15359184 15364409 5225 False 2645.666667 3565 94.023000 886 5944 3 chr1D.!!$F4 5058
6 TraesCS1B01G042000 chr1D 42320022 42320614 592 False 662.000000 662 86.804000 1349 1970 1 chr1D.!!$F2 621
7 TraesCS1B01G042000 chr1D 368917961 368918886 925 False 540.000000 599 89.304000 1118 1970 2 chr1D.!!$F5 852
8 TraesCS1B01G042000 chr1D 428762532 428763200 668 False 431.000000 492 92.608000 1349 1970 2 chr1D.!!$F6 621
9 TraesCS1B01G042000 chr1D 15344545 15345337 792 False 264.000000 326 89.465000 1 614 3 chr1D.!!$F3 613
10 TraesCS1B01G042000 chrUn 398483731 398485183 1452 True 599.000000 835 87.196500 5243 6220 2 chrUn.!!$R1 977
11 TraesCS1B01G042000 chrUn 407305684 407307047 1363 False 553.000000 760 87.442500 5243 6220 2 chrUn.!!$F1 977
12 TraesCS1B01G042000 chr6D 55251159 55252089 930 True 563.500000 630 90.122000 1114 1970 2 chr6D.!!$R1 856
13 TraesCS1B01G042000 chr6D 335166675 335167608 933 True 551.000000 616 89.599500 1114 1970 2 chr6D.!!$R2 856
14 TraesCS1B01G042000 chr3D 8766697 8767202 505 True 623.000000 623 89.744000 1096 1575 1 chr3D.!!$R1 479
15 TraesCS1B01G042000 chr4D 272817933 272818863 930 True 544.500000 603 89.366500 1114 1970 2 chr4D.!!$R1 856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 515 0.251519 AGGCCTTTTCCCTCTTGCTG 60.252 55.000 0.00 0.00 0.00 4.41 F
456 641 0.389166 CGAGCCAGACCACTCTCAAC 60.389 60.000 0.00 0.00 0.00 3.18 F
1547 1779 0.249699 TCTTCGAAGCTTGGCGTTGA 60.250 50.000 20.56 2.68 0.00 3.18 F
1995 2280 1.155889 TGAAATCATGCGCTTCACGT 58.844 45.000 9.73 0.00 46.11 4.49 F
2941 3236 1.685224 CAAGCACAGCCCTTCCCTA 59.315 57.895 0.00 0.00 0.00 3.53 F
4044 4563 0.936600 AGCAAAAATTGTGCCGTTGC 59.063 45.000 4.24 0.00 43.27 4.17 F
4161 4680 2.037381 GTCGGTCTTCAGGTCCTTTTCT 59.963 50.000 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 1433 0.404426 TGAGAGAAGGGGACTCACGA 59.596 55.000 0.00 0.00 42.68 4.35 R
2116 2401 0.629058 TGGGGTTAGGCCTTTGATCC 59.371 55.000 12.58 7.47 37.43 3.36 R
3446 3773 0.674895 CTAACCCACCAGCAGAGCAC 60.675 60.000 0.00 0.00 0.00 4.40 R
3613 3940 3.435890 GGCTGGGGGTTGCAAATAGTATA 60.436 47.826 0.00 0.00 0.00 1.47 R
4788 5369 0.938637 CTCTCATCGCGTCATGGAGC 60.939 60.000 5.77 0.00 0.00 4.70 R
5062 5659 0.391927 TCATTAAACCCAGACCGCCG 60.392 55.000 0.00 0.00 0.00 6.46 R
5894 13620 0.850883 AATGAAGGGGCCAGGGAGAA 60.851 55.000 4.39 0.00 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.566569 AGATGGCATCTATCTCAAATCCTATG 58.433 38.462 27.87 0.00 38.00 2.23
38 39 7.320384 TGGCATCTATCTCAAATCCTATGAA 57.680 36.000 0.00 0.00 0.00 2.57
69 70 7.926674 ATGTATCTCAAATCATGTGAACACA 57.073 32.000 10.04 10.04 46.44 3.72
81 82 5.359292 TCATGTGAACACAAGGAATCAACAA 59.641 36.000 11.60 0.00 45.41 2.83
82 83 5.850557 TGTGAACACAAGGAATCAACAAT 57.149 34.783 5.11 0.00 38.56 2.71
87 88 8.081633 GTGAACACAAGGAATCAACAATTCATA 58.918 33.333 0.00 0.00 44.81 2.15
88 89 8.637099 TGAACACAAGGAATCAACAATTCATAA 58.363 29.630 0.72 0.00 44.81 1.90
103 105 9.659135 AACAATTCATAAATGGGAAGATATGGA 57.341 29.630 0.00 0.00 0.00 3.41
131 133 9.863650 ATCTTCAACCTGAATTAATCATGATCT 57.136 29.630 9.06 2.33 35.59 2.75
136 138 9.622004 CAACCTGAATTAATCATGATCTATTGC 57.378 33.333 9.06 6.86 37.44 3.56
154 156 8.429493 TCTATTGCAGATTGTAATTGACTCTG 57.571 34.615 0.00 0.00 34.57 3.35
155 157 8.260114 TCTATTGCAGATTGTAATTGACTCTGA 58.740 33.333 11.18 0.00 33.95 3.27
156 158 7.876936 ATTGCAGATTGTAATTGACTCTGAT 57.123 32.000 11.18 0.00 33.95 2.90
169 171 8.774890 AATTGACTCTGATGATAGCATACATC 57.225 34.615 0.00 0.00 41.94 3.06
172 174 6.015940 TGACTCTGATGATAGCATACATCGTT 60.016 38.462 0.00 0.00 43.74 3.85
174 176 6.089249 TCTGATGATAGCATACATCGTTGT 57.911 37.500 4.29 4.29 43.74 3.32
206 208 4.842531 TCAAGGATTAGTCCATGAGCAA 57.157 40.909 8.01 0.00 44.84 3.91
211 213 5.036117 GGATTAGTCCATGAGCAAGGTAA 57.964 43.478 0.00 0.00 44.42 2.85
286 418 1.002468 GTCTCAAATGTGCACGCTTGT 60.002 47.619 22.76 1.65 0.00 3.16
302 443 5.633601 CACGCTTGTTTCAAGTATCTCTACA 59.366 40.000 10.49 0.00 0.00 2.74
303 444 5.634020 ACGCTTGTTTCAAGTATCTCTACAC 59.366 40.000 10.49 0.00 0.00 2.90
304 445 5.864474 CGCTTGTTTCAAGTATCTCTACACT 59.136 40.000 10.49 0.00 0.00 3.55
305 446 6.034044 CGCTTGTTTCAAGTATCTCTACACTC 59.966 42.308 10.49 0.00 0.00 3.51
311 452 1.868498 AGTATCTCTACACTCGCTCGC 59.132 52.381 0.00 0.00 0.00 5.03
316 457 0.727970 TCTACACTCGCTCGCTCTTC 59.272 55.000 0.00 0.00 0.00 2.87
337 478 1.757340 GTACCTCACCCTCCCCTCG 60.757 68.421 0.00 0.00 0.00 4.63
342 483 1.457643 TCACCCTCCCCTCGCTATG 60.458 63.158 0.00 0.00 0.00 2.23
359 500 0.461961 ATGAGAAGTGCGTAGAGGCC 59.538 55.000 0.00 0.00 0.00 5.19
372 513 2.572733 GAGGCCTTTTCCCTCTTGC 58.427 57.895 6.77 0.00 44.40 4.01
374 515 0.251519 AGGCCTTTTCCCTCTTGCTG 60.252 55.000 0.00 0.00 0.00 4.41
383 524 4.589216 TTCCCTCTTGCTGTTTCATTTG 57.411 40.909 0.00 0.00 0.00 2.32
389 530 6.238184 CCCTCTTGCTGTTTCATTTGAAAAAC 60.238 38.462 7.28 0.00 44.58 2.43
406 547 4.904253 AAAACACCGCTAGCAGTTTTAA 57.096 36.364 27.35 0.00 41.00 1.52
407 548 4.904253 AAACACCGCTAGCAGTTTTAAA 57.096 36.364 16.45 0.00 30.64 1.52
409 550 5.447624 AACACCGCTAGCAGTTTTAAAAT 57.552 34.783 16.45 0.00 0.00 1.82
410 551 4.794169 ACACCGCTAGCAGTTTTAAAATG 58.206 39.130 16.45 0.41 0.00 2.32
411 552 4.165779 CACCGCTAGCAGTTTTAAAATGG 58.834 43.478 16.45 5.44 0.00 3.16
412 553 3.824443 ACCGCTAGCAGTTTTAAAATGGT 59.176 39.130 16.45 13.94 0.00 3.55
413 554 4.082949 ACCGCTAGCAGTTTTAAAATGGTC 60.083 41.667 16.45 0.17 0.00 4.02
415 556 4.156008 CGCTAGCAGTTTTAAAATGGTCCT 59.844 41.667 16.45 1.64 0.00 3.85
448 633 2.342279 CGAAACCGAGCCAGACCA 59.658 61.111 0.00 0.00 0.00 4.02
456 641 0.389166 CGAGCCAGACCACTCTCAAC 60.389 60.000 0.00 0.00 0.00 3.18
494 679 5.301298 AGCTTGGCTATCTCATTTCCATTTC 59.699 40.000 0.00 0.00 36.99 2.17
504 689 5.300034 TCTCATTTCCATTTCCCATGAATCG 59.700 40.000 0.00 0.00 0.00 3.34
534 719 6.011277 ACGCTATTAAAACTCGCTTTAAACG 58.989 36.000 4.47 4.47 35.10 3.60
538 723 8.353653 GCTATTAAAACTCGCTTTAAACGTTTC 58.646 33.333 18.42 1.80 35.10 2.78
539 724 7.613247 ATTAAAACTCGCTTTAAACGTTTCC 57.387 32.000 18.42 3.99 35.10 3.13
557 742 3.080300 TCCGAACCCATTGCTTGTTAT 57.920 42.857 0.00 0.00 0.00 1.89
614 799 8.270111 CGTTTAGTTTTTGCCACGAAATTAATT 58.730 29.630 0.00 0.00 0.00 1.40
619 804 8.716909 AGTTTTTGCCACGAAATTAATTAATGG 58.283 29.630 11.42 15.93 31.87 3.16
620 805 8.713271 GTTTTTGCCACGAAATTAATTAATGGA 58.287 29.630 21.18 9.58 30.76 3.41
621 806 7.820044 TTTGCCACGAAATTAATTAATGGAC 57.180 32.000 21.18 15.08 30.76 4.02
622 807 6.516739 TGCCACGAAATTAATTAATGGACA 57.483 33.333 21.18 16.64 30.76 4.02
623 808 7.106439 TGCCACGAAATTAATTAATGGACAT 57.894 32.000 21.18 0.00 30.76 3.06
624 809 8.226819 TGCCACGAAATTAATTAATGGACATA 57.773 30.769 21.18 7.88 30.76 2.29
625 810 8.132362 TGCCACGAAATTAATTAATGGACATAC 58.868 33.333 21.18 9.47 30.76 2.39
626 811 8.349983 GCCACGAAATTAATTAATGGACATACT 58.650 33.333 21.18 0.00 30.76 2.12
627 812 9.878599 CCACGAAATTAATTAATGGACATACTC 57.121 33.333 11.42 0.53 30.76 2.59
628 813 9.878599 CACGAAATTAATTAATGGACATACTCC 57.121 33.333 11.42 0.00 39.97 3.85
629 814 9.063615 ACGAAATTAATTAATGGACATACTCCC 57.936 33.333 11.42 0.00 38.49 4.30
630 815 9.284968 CGAAATTAATTAATGGACATACTCCCT 57.715 33.333 11.42 0.00 38.49 4.20
633 818 9.799106 AATTAATTAATGGACATACTCCCTCTG 57.201 33.333 11.42 0.00 38.49 3.35
634 819 6.831664 AATTAATGGACATACTCCCTCTGT 57.168 37.500 0.00 0.00 38.49 3.41
635 820 5.871396 TTAATGGACATACTCCCTCTGTC 57.129 43.478 0.00 0.00 38.49 3.51
641 826 5.934402 GACATACTCCCTCTGTCCTTTAA 57.066 43.478 0.00 0.00 34.55 1.52
642 827 6.295719 GACATACTCCCTCTGTCCTTTAAA 57.704 41.667 0.00 0.00 34.55 1.52
643 828 6.697641 ACATACTCCCTCTGTCCTTTAAAA 57.302 37.500 0.00 0.00 0.00 1.52
644 829 7.086685 ACATACTCCCTCTGTCCTTTAAAAA 57.913 36.000 0.00 0.00 0.00 1.94
645 830 7.168905 ACATACTCCCTCTGTCCTTTAAAAAG 58.831 38.462 0.00 0.00 35.79 2.27
646 831 5.648330 ACTCCCTCTGTCCTTTAAAAAGT 57.352 39.130 2.03 0.00 34.20 2.66
647 832 5.377478 ACTCCCTCTGTCCTTTAAAAAGTG 58.623 41.667 2.03 0.00 34.20 3.16
648 833 5.104067 ACTCCCTCTGTCCTTTAAAAAGTGT 60.104 40.000 2.03 0.00 34.20 3.55
649 834 6.100714 ACTCCCTCTGTCCTTTAAAAAGTGTA 59.899 38.462 2.03 0.00 34.20 2.90
650 835 6.293698 TCCCTCTGTCCTTTAAAAAGTGTAC 58.706 40.000 2.03 0.00 34.20 2.90
651 836 6.100714 TCCCTCTGTCCTTTAAAAAGTGTACT 59.899 38.462 0.00 0.00 34.20 2.73
652 837 6.771267 CCCTCTGTCCTTTAAAAAGTGTACTT 59.229 38.462 0.00 0.00 37.91 2.24
654 839 8.343366 CCTCTGTCCTTTAAAAAGTGTACTTTC 58.657 37.037 10.16 0.00 44.69 2.62
655 840 8.795842 TCTGTCCTTTAAAAAGTGTACTTTCA 57.204 30.769 10.16 1.89 44.69 2.69
656 841 9.233649 TCTGTCCTTTAAAAAGTGTACTTTCAA 57.766 29.630 10.16 5.67 44.69 2.69
669 854 9.981114 AAGTGTACTTTCAATTTTATTGGAAGG 57.019 29.630 19.42 8.02 38.91 3.46
670 855 9.143155 AGTGTACTTTCAATTTTATTGGAAGGT 57.857 29.630 19.42 11.81 38.91 3.50
671 856 9.406828 GTGTACTTTCAATTTTATTGGAAGGTC 57.593 33.333 19.42 13.62 38.91 3.85
672 857 9.137459 TGTACTTTCAATTTTATTGGAAGGTCA 57.863 29.630 19.42 15.30 38.91 4.02
673 858 9.974980 GTACTTTCAATTTTATTGGAAGGTCAA 57.025 29.630 19.42 4.94 38.91 3.18
675 860 9.325198 ACTTTCAATTTTATTGGAAGGTCAAAC 57.675 29.630 19.42 0.00 38.91 2.93
676 861 9.546428 CTTTCAATTTTATTGGAAGGTCAAACT 57.454 29.630 11.10 0.00 32.64 2.66
677 862 9.898152 TTTCAATTTTATTGGAAGGTCAAACTT 57.102 25.926 0.00 0.00 0.00 2.66
678 863 9.898152 TTCAATTTTATTGGAAGGTCAAACTTT 57.102 25.926 0.00 0.00 0.00 2.66
679 864 9.898152 TCAATTTTATTGGAAGGTCAAACTTTT 57.102 25.926 0.00 0.00 0.00 2.27
823 1008 7.856145 ATATTTTTGCACAAACTTGGTCAAA 57.144 28.000 0.00 7.05 34.30 2.69
824 1009 4.999751 TTTTGCACAAACTTGGTCAAAC 57.000 36.364 9.43 0.00 35.14 2.93
825 1010 3.951775 TTGCACAAACTTGGTCAAACT 57.048 38.095 0.00 0.00 0.00 2.66
826 1011 3.951775 TGCACAAACTTGGTCAAACTT 57.048 38.095 0.00 0.00 0.00 2.66
827 1012 4.264460 TGCACAAACTTGGTCAAACTTT 57.736 36.364 0.00 0.00 0.00 2.66
828 1013 3.993081 TGCACAAACTTGGTCAAACTTTG 59.007 39.130 0.00 0.00 0.00 2.77
829 1014 4.241681 GCACAAACTTGGTCAAACTTTGA 58.758 39.130 14.99 0.00 37.33 2.69
830 1015 4.327087 GCACAAACTTGGTCAAACTTTGAG 59.673 41.667 4.36 10.71 41.01 3.02
831 1016 5.708948 CACAAACTTGGTCAAACTTTGAGA 58.291 37.500 4.36 0.00 41.01 3.27
832 1017 6.332630 CACAAACTTGGTCAAACTTTGAGAT 58.667 36.000 4.36 0.00 41.01 2.75
833 1018 6.254157 CACAAACTTGGTCAAACTTTGAGATG 59.746 38.462 4.36 0.96 41.01 2.90
834 1019 5.520376 AACTTGGTCAAACTTTGAGATGG 57.480 39.130 4.36 0.04 41.01 3.51
835 1020 4.536765 ACTTGGTCAAACTTTGAGATGGT 58.463 39.130 4.36 0.59 41.01 3.55
836 1021 4.956075 ACTTGGTCAAACTTTGAGATGGTT 59.044 37.500 4.36 0.00 41.01 3.67
837 1022 5.422012 ACTTGGTCAAACTTTGAGATGGTTT 59.578 36.000 4.36 0.00 41.01 3.27
838 1023 5.261209 TGGTCAAACTTTGAGATGGTTTG 57.739 39.130 4.36 10.36 46.18 2.93
846 1031 8.463930 AAACTTTGAGATGGTTTGATTCTACA 57.536 30.769 0.00 0.00 32.84 2.74
847 1032 8.463930 AACTTTGAGATGGTTTGATTCTACAA 57.536 30.769 0.00 0.00 0.00 2.41
848 1033 7.875971 ACTTTGAGATGGTTTGATTCTACAAC 58.124 34.615 0.00 0.00 0.00 3.32
849 1034 7.502226 ACTTTGAGATGGTTTGATTCTACAACA 59.498 33.333 0.00 0.00 0.00 3.33
850 1035 7.815840 TTGAGATGGTTTGATTCTACAACAA 57.184 32.000 0.00 0.00 0.00 2.83
851 1036 7.815840 TGAGATGGTTTGATTCTACAACAAA 57.184 32.000 0.00 0.00 0.00 2.83
852 1037 7.874940 TGAGATGGTTTGATTCTACAACAAAG 58.125 34.615 0.00 0.00 34.86 2.77
853 1038 7.502226 TGAGATGGTTTGATTCTACAACAAAGT 59.498 33.333 0.00 0.00 34.86 2.66
854 1039 8.237811 AGATGGTTTGATTCTACAACAAAGTT 57.762 30.769 0.00 0.00 34.86 2.66
855 1040 8.137437 AGATGGTTTGATTCTACAACAAAGTTG 58.863 33.333 8.24 8.24 34.86 3.16
856 1041 6.568869 TGGTTTGATTCTACAACAAAGTTGG 58.431 36.000 13.71 0.00 34.86 3.77
857 1042 6.378564 TGGTTTGATTCTACAACAAAGTTGGA 59.621 34.615 13.71 4.82 34.86 3.53
858 1043 7.093727 TGGTTTGATTCTACAACAAAGTTGGAA 60.094 33.333 13.71 8.82 34.86 3.53
859 1044 7.435192 GGTTTGATTCTACAACAAAGTTGGAAG 59.565 37.037 13.71 10.37 34.86 3.46
860 1045 7.639113 TTGATTCTACAACAAAGTTGGAAGT 57.361 32.000 13.71 0.61 0.00 3.01
861 1046 8.740123 TTGATTCTACAACAAAGTTGGAAGTA 57.260 30.769 13.71 5.81 0.00 2.24
862 1047 8.918202 TGATTCTACAACAAAGTTGGAAGTAT 57.082 30.769 13.71 9.52 0.00 2.12
866 1051 9.485206 TTCTACAACAAAGTTGGAAGTATACTC 57.515 33.333 5.70 0.01 0.00 2.59
867 1052 8.867097 TCTACAACAAAGTTGGAAGTATACTCT 58.133 33.333 5.70 0.00 0.00 3.24
868 1053 9.490379 CTACAACAAAGTTGGAAGTATACTCTT 57.510 33.333 5.70 1.95 0.00 2.85
869 1054 8.747538 ACAACAAAGTTGGAAGTATACTCTTT 57.252 30.769 5.70 8.11 0.00 2.52
870 1055 9.841295 ACAACAAAGTTGGAAGTATACTCTTTA 57.159 29.630 5.70 0.00 0.00 1.85
881 1066 9.589111 GGAAGTATACTCTTTAAAGAACAGAGG 57.411 37.037 18.25 8.55 38.76 3.69
882 1067 9.589111 GAAGTATACTCTTTAAAGAACAGAGGG 57.411 37.037 18.25 7.89 38.76 4.30
883 1068 8.896722 AGTATACTCTTTAAAGAACAGAGGGA 57.103 34.615 18.25 3.55 38.76 4.20
884 1069 8.973182 AGTATACTCTTTAAAGAACAGAGGGAG 58.027 37.037 18.25 6.57 38.76 4.30
897 1082 8.152023 AGAACAGAGGGAGTAAATCATTTAGT 57.848 34.615 0.00 0.00 0.00 2.24
937 1128 3.945921 TCTCAGTTCTACCACAGTATCGG 59.054 47.826 0.00 0.00 0.00 4.18
955 1146 1.185618 GGCCACTCCCCTGTTTTTCC 61.186 60.000 0.00 0.00 0.00 3.13
956 1147 0.469144 GCCACTCCCCTGTTTTTCCA 60.469 55.000 0.00 0.00 0.00 3.53
966 1157 4.298332 CCCTGTTTTTCCAAGTCGATTTG 58.702 43.478 13.31 13.31 0.00 2.32
984 1175 3.484742 GACGCGATCGGATCCAGCA 62.485 63.158 15.93 0.00 40.69 4.41
988 1179 2.865598 CGATCGGATCCAGCAGCCT 61.866 63.158 13.41 0.00 0.00 4.58
989 1180 1.005156 GATCGGATCCAGCAGCCTC 60.005 63.158 13.41 0.00 0.00 4.70
990 1181 2.447586 GATCGGATCCAGCAGCCTCC 62.448 65.000 13.41 0.00 0.00 4.30
991 1182 4.598894 CGGATCCAGCAGCCTCCG 62.599 72.222 13.41 8.42 43.98 4.63
992 1183 4.247380 GGATCCAGCAGCCTCCGG 62.247 72.222 6.95 0.00 0.00 5.14
1237 1446 4.070552 GCGCTCGTGAGTCCCCTT 62.071 66.667 0.00 0.00 0.00 3.95
1253 1465 1.402787 CCTTCTCTCAGCTCCTCTCC 58.597 60.000 0.00 0.00 0.00 3.71
1446 1676 1.440893 CCATCTGCAGAGAGGGTCG 59.559 63.158 22.96 4.18 43.96 4.79
1500 1730 6.713903 ACTTGGAGGTATGCAGATTATCATTG 59.286 38.462 0.00 0.00 0.00 2.82
1542 1774 1.873591 TGAGTTTCTTCGAAGCTTGGC 59.126 47.619 20.56 9.76 0.00 4.52
1547 1779 0.249699 TCTTCGAAGCTTGGCGTTGA 60.250 50.000 20.56 2.68 0.00 3.18
1618 1895 5.278169 CCCTGAAGAAGTTGTTTCATGTCTG 60.278 44.000 0.00 0.00 38.31 3.51
1688 1970 7.814264 AGGCACTATTTGGATATCTTGAAAG 57.186 36.000 2.05 0.00 36.02 2.62
1811 2094 2.066999 GGTAGCCAGAGGGACCCTG 61.067 68.421 20.90 5.07 31.76 4.45
1840 2125 4.510038 AATTTGATGCACTCAACTGTCC 57.490 40.909 10.01 0.00 43.54 4.02
1841 2126 2.636647 TTGATGCACTCAACTGTCCA 57.363 45.000 7.27 0.00 38.97 4.02
1852 2137 6.347725 GCACTCAACTGTCCATTACTAGTTTG 60.348 42.308 0.00 0.00 31.36 2.93
1867 2152 9.938280 ATTACTAGTTTGCACAGTAGTTTATGA 57.062 29.630 22.06 4.77 35.08 2.15
1872 2157 7.940850 AGTTTGCACAGTAGTTTATGATGTTT 58.059 30.769 0.00 0.00 0.00 2.83
1995 2280 1.155889 TGAAATCATGCGCTTCACGT 58.844 45.000 9.73 0.00 46.11 4.49
2043 2328 2.631160 ACATGGAACGTCAGGTTGAA 57.369 45.000 0.00 0.00 39.50 2.69
2941 3236 1.685224 CAAGCACAGCCCTTCCCTA 59.315 57.895 0.00 0.00 0.00 3.53
2950 3245 3.269381 ACAGCCCTTCCCTATGATTTTCA 59.731 43.478 0.00 0.00 0.00 2.69
2954 3249 5.134339 AGCCCTTCCCTATGATTTTCATGTA 59.866 40.000 0.30 0.00 37.70 2.29
3019 3345 7.992754 AGATGTAAATCTGTTCTTGCTCTTT 57.007 32.000 0.00 0.00 0.00 2.52
3209 3535 8.995220 TGACAGTAATATTGCTTTACTTTCGTT 58.005 29.630 2.97 0.00 38.39 3.85
3303 3629 4.874396 CCGGTCCTTTTTCTTACTACATCC 59.126 45.833 0.00 0.00 0.00 3.51
3372 3699 4.568956 GCATTACTTTGTCTTTGCCCATT 58.431 39.130 0.00 0.00 0.00 3.16
3446 3773 3.084786 CCTTCAGGCTTTTCTAACAGGG 58.915 50.000 0.00 0.00 0.00 4.45
3598 3925 4.572985 TGACTGCTTTGGATGTTTCTTG 57.427 40.909 0.00 0.00 0.00 3.02
3706 4158 5.347907 CGGTGTCCTCTTTAATACTCAACAC 59.652 44.000 0.00 0.00 35.06 3.32
3757 4249 8.749499 CAAAAGTTTGAGCATAAAGACTTTGAG 58.251 33.333 10.80 4.15 40.55 3.02
3759 4251 7.992754 AGTTTGAGCATAAAGACTTTGAGAT 57.007 32.000 10.80 1.52 0.00 2.75
3760 4252 8.038492 AGTTTGAGCATAAAGACTTTGAGATC 57.962 34.615 10.80 10.81 0.00 2.75
3761 4253 7.882271 AGTTTGAGCATAAAGACTTTGAGATCT 59.118 33.333 10.80 0.00 0.00 2.75
3762 4254 8.510505 GTTTGAGCATAAAGACTTTGAGATCTT 58.489 33.333 10.80 0.00 36.73 2.40
3763 4255 9.725019 TTTGAGCATAAAGACTTTGAGATCTTA 57.275 29.630 10.80 0.00 34.01 2.10
3764 4256 9.725019 TTGAGCATAAAGACTTTGAGATCTTAA 57.275 29.630 10.80 0.00 34.01 1.85
3765 4257 9.376075 TGAGCATAAAGACTTTGAGATCTTAAG 57.624 33.333 10.80 13.89 34.01 1.85
3766 4258 8.207521 AGCATAAAGACTTTGAGATCTTAAGC 57.792 34.615 10.80 6.40 34.01 3.09
3767 4259 8.046107 AGCATAAAGACTTTGAGATCTTAAGCT 58.954 33.333 10.80 8.17 34.01 3.74
3768 4260 9.319143 GCATAAAGACTTTGAGATCTTAAGCTA 57.681 33.333 10.80 5.95 34.01 3.32
3866 4358 2.607811 CCAGAGGTGGTGCATAGGA 58.392 57.895 0.00 0.00 39.30 2.94
3939 4438 6.662616 AGCAGAAATATTGCATGTATTCGTC 58.337 36.000 0.00 2.34 43.92 4.20
4044 4563 0.936600 AGCAAAAATTGTGCCGTTGC 59.063 45.000 4.24 0.00 43.27 4.17
4143 4662 3.123621 GGCTTTCTACAGTGACATTGTCG 59.876 47.826 6.89 1.51 34.95 4.35
4161 4680 2.037381 GTCGGTCTTCAGGTCCTTTTCT 59.963 50.000 0.00 0.00 0.00 2.52
4162 4681 2.299297 TCGGTCTTCAGGTCCTTTTCTC 59.701 50.000 0.00 0.00 0.00 2.87
4163 4682 2.613223 CGGTCTTCAGGTCCTTTTCTCC 60.613 54.545 0.00 0.00 0.00 3.71
4322 4902 3.438781 GCAACCATCCGTCACATTTCTAA 59.561 43.478 0.00 0.00 0.00 2.10
4411 4991 2.872245 CAGTGCTTCTTTCCTCGTGAAA 59.128 45.455 3.55 3.55 40.64 2.69
4558 5138 4.976224 AGGTTTGTTTCAGGTACAACAC 57.024 40.909 0.00 0.00 35.39 3.32
4676 5256 3.760684 AGGTTGATTCACCTTGCATCTTC 59.239 43.478 0.00 0.00 45.76 2.87
4682 5262 3.490439 TCACCTTGCATCTTCTGACAA 57.510 42.857 0.00 0.00 0.00 3.18
4731 5312 9.859427 CATTACAATTAATCACCTGTGTTTCAT 57.141 29.630 1.54 0.00 0.00 2.57
4737 5318 2.849942 TCACCTGTGTTTCATGGTCTG 58.150 47.619 0.00 0.00 0.00 3.51
4754 5335 5.001232 TGGTCTGCTTACATGTTTTCCTAC 58.999 41.667 2.30 0.00 0.00 3.18
4788 5369 4.398319 TCTTTGCAGGTTTTAGGGAAGAG 58.602 43.478 0.00 0.00 0.00 2.85
4791 5372 2.290323 TGCAGGTTTTAGGGAAGAGCTC 60.290 50.000 5.27 5.27 0.00 4.09
4937 5518 7.259088 ACAACAAGGTATCACTTCTATCCTT 57.741 36.000 0.00 0.00 35.97 3.36
4954 5535 9.530633 TTCTATCCTTTAGAGATTAGAAAACGC 57.469 33.333 3.78 0.00 30.24 4.84
4961 5542 5.847670 AGAGATTAGAAAACGCAACAGAC 57.152 39.130 0.00 0.00 0.00 3.51
5062 5659 7.041508 CCATAATCTGGCAGTGTTTTAGAGATC 60.042 40.741 15.27 0.00 38.47 2.75
5099 5696 1.611977 TGAGAACTCACGGTGTGTAGG 59.388 52.381 15.36 2.25 34.14 3.18
5100 5697 0.966920 AGAACTCACGGTGTGTAGGG 59.033 55.000 15.36 0.72 34.79 3.53
5136 5734 4.134563 ACGTCTTCATTTTTACACCAGCT 58.865 39.130 0.00 0.00 0.00 4.24
5163 5761 5.365314 TGATATGCCCACATGTTGTAGACTA 59.635 40.000 0.00 0.00 37.04 2.59
5175 5773 3.887621 TGTAGACTACATGCCTGAACC 57.112 47.619 11.37 0.00 32.89 3.62
5191 5789 5.065346 GCCTGAACCTAGCTTACATTTTCTC 59.935 44.000 0.00 0.00 0.00 2.87
5192 5790 6.410540 CCTGAACCTAGCTTACATTTTCTCT 58.589 40.000 0.00 0.00 0.00 3.10
5218 5816 6.653183 CATAGAGTGCTTATCAAACCGATTG 58.347 40.000 0.00 0.00 40.58 2.67
5240 5838 4.021456 TGTGACAGTGGTGATATTCGAGTT 60.021 41.667 0.00 0.00 0.00 3.01
5241 5839 5.184287 TGTGACAGTGGTGATATTCGAGTTA 59.816 40.000 0.00 0.00 0.00 2.24
5298 8725 7.065324 TGGAACGTTAATCATTCTGGTGAATAC 59.935 37.037 0.00 0.00 40.61 1.89
5317 8744 2.758089 GCAGACCATGGCAGAAGCG 61.758 63.158 13.04 0.00 43.41 4.68
5757 13472 0.179034 ATTCATTCCAGAGGAGCCGC 60.179 55.000 0.00 0.00 31.21 6.53
5760 13475 0.883814 CATTCCAGAGGAGCCGCATC 60.884 60.000 0.00 0.00 31.21 3.91
5767 13482 2.954868 GGAGCCGCATCGTGTACG 60.955 66.667 0.00 0.00 41.45 3.67
5780 13500 5.107143 GCATCGTGTACGGTAAACCTTTAAA 60.107 40.000 4.44 0.00 40.29 1.52
5891 13617 3.584848 CCCTTTTCTCTTCTTCTCCTCCA 59.415 47.826 0.00 0.00 0.00 3.86
5892 13618 4.564613 CCCTTTTCTCTTCTTCTCCTCCAC 60.565 50.000 0.00 0.00 0.00 4.02
5893 13619 4.564613 CCTTTTCTCTTCTTCTCCTCCACC 60.565 50.000 0.00 0.00 0.00 4.61
5894 13620 3.551635 TTCTCTTCTTCTCCTCCACCT 57.448 47.619 0.00 0.00 0.00 4.00
5895 13621 3.551635 TCTCTTCTTCTCCTCCACCTT 57.448 47.619 0.00 0.00 0.00 3.50
5896 13622 3.436243 TCTCTTCTTCTCCTCCACCTTC 58.564 50.000 0.00 0.00 0.00 3.46
5897 13623 3.076785 TCTCTTCTTCTCCTCCACCTTCT 59.923 47.826 0.00 0.00 0.00 2.85
5898 13624 3.436243 TCTTCTTCTCCTCCACCTTCTC 58.564 50.000 0.00 0.00 0.00 2.87
5899 13625 2.239681 TCTTCTCCTCCACCTTCTCC 57.760 55.000 0.00 0.00 0.00 3.71
5900 13626 1.199615 CTTCTCCTCCACCTTCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
5901 13627 0.793617 TTCTCCTCCACCTTCTCCCT 59.206 55.000 0.00 0.00 0.00 4.20
5902 13628 0.041833 TCTCCTCCACCTTCTCCCTG 59.958 60.000 0.00 0.00 0.00 4.45
5903 13629 0.980231 CTCCTCCACCTTCTCCCTGG 60.980 65.000 0.00 0.00 0.00 4.45
5993 15158 6.699204 CAGTATCGAACTACATGAAAGCATCT 59.301 38.462 0.00 0.00 35.76 2.90
6028 15211 6.256539 CACATGGTGTTATGAGATGTCAGTAC 59.743 42.308 0.00 0.00 35.66 2.73
6034 15217 5.817296 TGTTATGAGATGTCAGTACAATGGC 59.183 40.000 7.19 0.00 39.58 4.40
6061 15247 6.229733 CCCTATTTAAGCATGAGAAGAGAGG 58.770 44.000 0.00 0.00 0.00 3.69
6064 15250 4.478206 TTAAGCATGAGAAGAGAGGTGG 57.522 45.455 0.00 0.00 0.00 4.61
6072 15258 4.947883 TGAGAAGAGAGGTGGAATAGGAA 58.052 43.478 0.00 0.00 0.00 3.36
6074 15260 4.689062 AGAAGAGAGGTGGAATAGGAACA 58.311 43.478 0.00 0.00 0.00 3.18
6082 15268 7.010160 AGAGGTGGAATAGGAACAAAATTTCA 58.990 34.615 0.00 0.00 0.00 2.69
6083 15269 6.993079 AGGTGGAATAGGAACAAAATTTCAC 58.007 36.000 0.00 0.00 38.06 3.18
6084 15270 6.553100 AGGTGGAATAGGAACAAAATTTCACA 59.447 34.615 7.73 0.00 39.76 3.58
6085 15271 7.070571 AGGTGGAATAGGAACAAAATTTCACAA 59.929 33.333 7.73 0.00 39.76 3.33
6100 15286 1.704628 TCACAAAGAGGCCATCCTTCA 59.295 47.619 5.01 0.00 44.46 3.02
6107 15293 3.941629 AGAGGCCATCCTTCATACCTAA 58.058 45.455 5.01 0.00 44.46 2.69
6114 15300 2.972348 TCCTTCATACCTAAGGCCGAT 58.028 47.619 0.00 0.00 42.79 4.18
6118 15308 4.263068 CCTTCATACCTAAGGCCGATCAAT 60.263 45.833 0.00 0.00 37.30 2.57
6125 15315 0.182775 AAGGCCGATCAATGGGGTAC 59.817 55.000 0.00 0.00 0.00 3.34
6200 15392 8.918202 TTGGACACTGATAAGATTACTTTTGT 57.082 30.769 0.00 0.00 37.53 2.83
6230 15422 0.768622 TTGAACCCACGGACATCCTT 59.231 50.000 0.00 0.00 0.00 3.36
6289 15483 4.081309 TGCCTATGAGGTTGTAGTTGTACC 60.081 45.833 0.00 0.00 37.80 3.34
6290 15484 4.682589 GCCTATGAGGTTGTAGTTGTACCC 60.683 50.000 0.00 0.00 37.80 3.69
6291 15485 3.994931 ATGAGGTTGTAGTTGTACCCC 57.005 47.619 0.00 0.00 32.20 4.95
6292 15486 1.619827 TGAGGTTGTAGTTGTACCCCG 59.380 52.381 0.00 0.00 32.20 5.73
6294 15488 0.686789 GGTTGTAGTTGTACCCCGGT 59.313 55.000 0.00 0.00 0.00 5.28
6298 15492 0.247460 GTAGTTGTACCCCGGTGGAC 59.753 60.000 15.08 3.87 38.00 4.02
6300 15494 1.004200 GTTGTACCCCGGTGGACAG 60.004 63.158 15.08 0.00 38.00 3.51
6303 15497 2.677524 TACCCCGGTGGACAGTCG 60.678 66.667 15.08 0.00 38.00 4.18
6305 15499 4.065281 CCCCGGTGGACAGTCGAC 62.065 72.222 7.70 7.70 35.39 4.20
6306 15500 3.299977 CCCGGTGGACAGTCGACA 61.300 66.667 19.50 0.00 0.00 4.35
6324 15518 7.081526 GTCGACAAGACTATTACTAAGGTCA 57.918 40.000 11.55 0.00 46.13 4.02
6369 15563 9.900112 AATATCATAGGACTAGGAAAGTTACCT 57.100 33.333 0.00 0.00 39.07 3.08
6380 15579 6.884280 AGGAAAGTTACCTGAAGTGAAATG 57.116 37.500 0.00 0.00 36.30 2.32
6391 15590 8.181904 ACCTGAAGTGAAATGTCATGTATTTT 57.818 30.769 10.49 2.03 35.80 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 8.378115 TCCCATTTATGAATTGTTGATTCCTT 57.622 30.769 0.00 0.00 42.90 3.36
130 132 8.429493 TCAGAGTCAATTACAATCTGCAATAG 57.571 34.615 8.49 0.00 37.81 1.73
131 133 8.833493 CATCAGAGTCAATTACAATCTGCAATA 58.167 33.333 8.49 0.00 37.81 1.90
136 138 8.710551 GCTATCATCAGAGTCAATTACAATCTG 58.289 37.037 7.42 7.42 38.97 2.90
147 149 5.474876 ACGATGTATGCTATCATCAGAGTCA 59.525 40.000 12.95 0.00 39.99 3.41
169 171 3.499157 TCCTTGAAAACCGGAATACAACG 59.501 43.478 9.46 3.95 0.00 4.10
172 174 6.478129 ACTAATCCTTGAAAACCGGAATACA 58.522 36.000 9.46 0.00 0.00 2.29
174 176 6.117488 GGACTAATCCTTGAAAACCGGAATA 58.883 40.000 9.46 0.00 42.45 1.75
286 418 5.447413 CGAGCGAGTGTAGAGATACTTGAAA 60.447 44.000 0.00 0.00 31.34 2.69
302 443 3.816524 CCCGAAGAGCGAGCGAGT 61.817 66.667 0.00 0.00 44.57 4.18
303 444 2.470362 TACCCGAAGAGCGAGCGAG 61.470 63.158 0.00 0.00 44.57 5.03
304 445 2.437180 TACCCGAAGAGCGAGCGA 60.437 61.111 0.00 0.00 44.57 4.93
305 446 2.278013 GTACCCGAAGAGCGAGCG 60.278 66.667 0.00 0.00 44.57 5.03
326 467 1.152440 CTCATAGCGAGGGGAGGGT 60.152 63.158 0.00 0.00 38.18 4.34
337 478 2.860582 GCCTCTACGCACTTCTCATAGC 60.861 54.545 0.00 0.00 0.00 2.97
342 483 0.533032 AAGGCCTCTACGCACTTCTC 59.467 55.000 5.23 0.00 0.00 2.87
359 500 4.861102 ATGAAACAGCAAGAGGGAAAAG 57.139 40.909 0.00 0.00 0.00 2.27
372 513 4.566360 AGCGGTGTTTTTCAAATGAAACAG 59.434 37.500 8.04 0.77 43.90 3.16
374 515 5.332280 GCTAGCGGTGTTTTTCAAATGAAAC 60.332 40.000 8.04 0.17 43.01 2.78
383 524 3.349488 AAACTGCTAGCGGTGTTTTTC 57.651 42.857 29.39 0.00 35.44 2.29
389 530 4.165779 CCATTTTAAAACTGCTAGCGGTG 58.834 43.478 29.39 13.94 35.44 4.94
406 547 4.184649 AGAAGTTGGAACAGGACCATTT 57.815 40.909 0.00 0.00 42.39 2.32
407 548 3.884037 AGAAGTTGGAACAGGACCATT 57.116 42.857 0.00 0.00 42.39 3.16
409 550 3.181448 GGTAAGAAGTTGGAACAGGACCA 60.181 47.826 0.00 0.00 42.39 4.02
410 551 3.409570 GGTAAGAAGTTGGAACAGGACC 58.590 50.000 0.00 0.00 42.39 4.46
411 552 3.064931 CGGTAAGAAGTTGGAACAGGAC 58.935 50.000 0.00 0.00 42.39 3.85
412 553 2.967201 TCGGTAAGAAGTTGGAACAGGA 59.033 45.455 0.00 0.00 42.39 3.86
413 554 3.396260 TCGGTAAGAAGTTGGAACAGG 57.604 47.619 0.00 0.00 42.39 4.00
415 556 3.878699 GGTTTCGGTAAGAAGTTGGAACA 59.121 43.478 0.00 0.00 40.40 3.18
448 633 4.734398 TGGCAAATGTTTTGTTGAGAGT 57.266 36.364 2.32 0.00 0.00 3.24
456 641 3.612472 CCAAGCTTGGCAAATGTTTTG 57.388 42.857 31.70 4.57 42.21 2.44
494 679 0.508641 GCGTCGATTCGATTCATGGG 59.491 55.000 12.54 0.00 38.42 4.00
504 689 4.206609 AGCGAGTTTTAATAGCGTCGATTC 59.793 41.667 0.00 0.00 0.00 2.52
534 719 1.339929 ACAAGCAATGGGTTCGGAAAC 59.660 47.619 0.00 0.00 30.99 2.78
538 723 2.752354 TGATAACAAGCAATGGGTTCGG 59.248 45.455 0.00 0.00 30.99 4.30
539 724 4.433186 TTGATAACAAGCAATGGGTTCG 57.567 40.909 0.00 0.00 30.99 3.95
557 742 9.130312 CCAAAACGGTCGATAATTTAATTTTGA 57.870 29.630 0.00 0.00 36.90 2.69
577 762 5.730802 GCAAAAACTAAACGCTTTCCAAAAC 59.269 36.000 0.00 0.00 0.00 2.43
619 804 5.934402 TTAAAGGACAGAGGGAGTATGTC 57.066 43.478 0.00 0.00 45.24 3.06
620 805 6.697641 TTTTAAAGGACAGAGGGAGTATGT 57.302 37.500 0.00 0.00 31.51 2.29
621 806 7.119846 CACTTTTTAAAGGACAGAGGGAGTATG 59.880 40.741 7.12 0.00 40.31 2.39
622 807 7.168905 CACTTTTTAAAGGACAGAGGGAGTAT 58.831 38.462 7.12 0.00 40.31 2.12
623 808 6.100714 ACACTTTTTAAAGGACAGAGGGAGTA 59.899 38.462 7.12 0.00 40.31 2.59
624 809 5.104067 ACACTTTTTAAAGGACAGAGGGAGT 60.104 40.000 7.12 0.00 40.31 3.85
625 810 5.377478 ACACTTTTTAAAGGACAGAGGGAG 58.623 41.667 7.12 0.00 40.31 4.30
626 811 5.382664 ACACTTTTTAAAGGACAGAGGGA 57.617 39.130 7.12 0.00 40.31 4.20
627 812 6.296803 AGTACACTTTTTAAAGGACAGAGGG 58.703 40.000 7.12 0.00 40.31 4.30
628 813 7.803279 AAGTACACTTTTTAAAGGACAGAGG 57.197 36.000 7.12 0.00 40.31 3.69
629 814 8.889717 TGAAAGTACACTTTTTAAAGGACAGAG 58.110 33.333 8.66 0.00 45.37 3.35
630 815 8.795842 TGAAAGTACACTTTTTAAAGGACAGA 57.204 30.769 8.66 0.00 45.37 3.41
643 828 9.981114 CCTTCCAATAAAATTGAAAGTACACTT 57.019 29.630 0.00 0.00 37.91 3.16
644 829 9.143155 ACCTTCCAATAAAATTGAAAGTACACT 57.857 29.630 0.00 0.00 0.00 3.55
645 830 9.406828 GACCTTCCAATAAAATTGAAAGTACAC 57.593 33.333 0.00 0.00 0.00 2.90
646 831 9.137459 TGACCTTCCAATAAAATTGAAAGTACA 57.863 29.630 0.00 0.00 0.00 2.90
647 832 9.974980 TTGACCTTCCAATAAAATTGAAAGTAC 57.025 29.630 1.23 0.00 0.00 2.73
649 834 9.325198 GTTTGACCTTCCAATAAAATTGAAAGT 57.675 29.630 1.23 0.00 0.00 2.66
650 835 9.546428 AGTTTGACCTTCCAATAAAATTGAAAG 57.454 29.630 1.23 0.00 0.00 2.62
651 836 9.898152 AAGTTTGACCTTCCAATAAAATTGAAA 57.102 25.926 1.23 0.00 0.00 2.69
652 837 9.898152 AAAGTTTGACCTTCCAATAAAATTGAA 57.102 25.926 1.23 0.00 0.00 2.69
653 838 9.898152 AAAAGTTTGACCTTCCAATAAAATTGA 57.102 25.926 1.23 0.00 0.00 2.57
797 982 9.553064 TTTGACCAAGTTTGTGCAAAAATATAT 57.447 25.926 5.11 0.00 31.18 0.86
798 983 8.821894 GTTTGACCAAGTTTGTGCAAAAATATA 58.178 29.630 5.11 0.00 33.89 0.86
799 984 7.552330 AGTTTGACCAAGTTTGTGCAAAAATAT 59.448 29.630 5.11 0.00 33.89 1.28
800 985 6.876257 AGTTTGACCAAGTTTGTGCAAAAATA 59.124 30.769 5.11 0.00 33.89 1.40
801 986 5.704978 AGTTTGACCAAGTTTGTGCAAAAAT 59.295 32.000 5.11 0.00 33.89 1.82
802 987 5.059833 AGTTTGACCAAGTTTGTGCAAAAA 58.940 33.333 0.00 0.00 33.89 1.94
803 988 4.636249 AGTTTGACCAAGTTTGTGCAAAA 58.364 34.783 0.00 0.00 33.89 2.44
804 989 4.264460 AGTTTGACCAAGTTTGTGCAAA 57.736 36.364 0.00 0.00 31.45 3.68
805 990 3.951775 AGTTTGACCAAGTTTGTGCAA 57.048 38.095 0.00 0.00 0.00 4.08
806 991 3.951775 AAGTTTGACCAAGTTTGTGCA 57.048 38.095 0.00 0.00 0.00 4.57
807 992 4.582441 CAAAGTTTGACCAAGTTTGTGC 57.418 40.909 10.19 0.00 45.37 4.57
811 996 5.422012 ACCATCTCAAAGTTTGACCAAGTTT 59.578 36.000 14.35 0.00 38.38 2.66
812 997 4.956075 ACCATCTCAAAGTTTGACCAAGTT 59.044 37.500 14.35 0.00 35.46 2.66
813 998 4.536765 ACCATCTCAAAGTTTGACCAAGT 58.463 39.130 14.35 7.36 35.46 3.16
814 999 5.520376 AACCATCTCAAAGTTTGACCAAG 57.480 39.130 14.35 5.32 35.46 3.61
815 1000 5.930837 AAACCATCTCAAAGTTTGACCAA 57.069 34.783 14.35 3.91 35.46 3.67
821 1006 8.463930 TGTAGAATCAAACCATCTCAAAGTTT 57.536 30.769 0.00 0.00 34.13 2.66
822 1007 8.352942 GTTGTAGAATCAAACCATCTCAAAGTT 58.647 33.333 0.00 0.00 0.00 2.66
823 1008 7.502226 TGTTGTAGAATCAAACCATCTCAAAGT 59.498 33.333 0.00 0.00 0.00 2.66
824 1009 7.874940 TGTTGTAGAATCAAACCATCTCAAAG 58.125 34.615 0.00 0.00 0.00 2.77
825 1010 7.815840 TGTTGTAGAATCAAACCATCTCAAA 57.184 32.000 0.00 0.00 0.00 2.69
826 1011 7.815840 TTGTTGTAGAATCAAACCATCTCAA 57.184 32.000 0.00 0.00 0.00 3.02
827 1012 7.502226 ACTTTGTTGTAGAATCAAACCATCTCA 59.498 33.333 0.00 0.00 0.00 3.27
828 1013 7.875971 ACTTTGTTGTAGAATCAAACCATCTC 58.124 34.615 0.00 0.00 0.00 2.75
829 1014 7.823745 ACTTTGTTGTAGAATCAAACCATCT 57.176 32.000 0.00 0.00 0.00 2.90
830 1015 7.382218 CCAACTTTGTTGTAGAATCAAACCATC 59.618 37.037 9.20 0.00 0.00 3.51
831 1016 7.069331 TCCAACTTTGTTGTAGAATCAAACCAT 59.931 33.333 9.20 0.00 0.00 3.55
832 1017 6.378564 TCCAACTTTGTTGTAGAATCAAACCA 59.621 34.615 9.20 0.00 0.00 3.67
833 1018 6.801575 TCCAACTTTGTTGTAGAATCAAACC 58.198 36.000 9.20 0.00 0.00 3.27
834 1019 7.973944 ACTTCCAACTTTGTTGTAGAATCAAAC 59.026 33.333 9.20 0.00 0.00 2.93
835 1020 8.062065 ACTTCCAACTTTGTTGTAGAATCAAA 57.938 30.769 9.20 0.00 0.00 2.69
836 1021 7.639113 ACTTCCAACTTTGTTGTAGAATCAA 57.361 32.000 9.20 0.00 0.00 2.57
837 1022 8.918202 ATACTTCCAACTTTGTTGTAGAATCA 57.082 30.769 9.20 0.30 0.00 2.57
840 1025 9.485206 GAGTATACTTCCAACTTTGTTGTAGAA 57.515 33.333 6.88 6.02 0.00 2.10
841 1026 8.867097 AGAGTATACTTCCAACTTTGTTGTAGA 58.133 33.333 6.88 0.00 0.00 2.59
842 1027 9.490379 AAGAGTATACTTCCAACTTTGTTGTAG 57.510 33.333 6.88 8.34 0.00 2.74
843 1028 9.841295 AAAGAGTATACTTCCAACTTTGTTGTA 57.159 29.630 6.88 0.00 0.00 2.41
844 1029 8.747538 AAAGAGTATACTTCCAACTTTGTTGT 57.252 30.769 6.88 0.00 0.00 3.32
855 1040 9.589111 CCTCTGTTCTTTAAAGAGTATACTTCC 57.411 37.037 17.05 0.00 36.51 3.46
856 1041 9.589111 CCCTCTGTTCTTTAAAGAGTATACTTC 57.411 37.037 17.05 0.75 36.51 3.01
857 1042 9.322769 TCCCTCTGTTCTTTAAAGAGTATACTT 57.677 33.333 17.05 0.00 36.51 2.24
858 1043 8.896722 TCCCTCTGTTCTTTAAAGAGTATACT 57.103 34.615 17.05 4.68 36.51 2.12
859 1044 8.751242 ACTCCCTCTGTTCTTTAAAGAGTATAC 58.249 37.037 17.05 13.07 36.51 1.47
860 1045 8.896722 ACTCCCTCTGTTCTTTAAAGAGTATA 57.103 34.615 17.05 0.75 36.51 1.47
861 1046 7.800300 ACTCCCTCTGTTCTTTAAAGAGTAT 57.200 36.000 17.05 0.00 36.51 2.12
862 1047 8.716674 TTACTCCCTCTGTTCTTTAAAGAGTA 57.283 34.615 17.05 10.14 36.51 2.59
863 1048 7.613551 TTACTCCCTCTGTTCTTTAAAGAGT 57.386 36.000 17.05 11.02 36.51 3.24
864 1049 9.157104 GATTTACTCCCTCTGTTCTTTAAAGAG 57.843 37.037 17.05 7.23 36.22 2.85
865 1050 8.656806 TGATTTACTCCCTCTGTTCTTTAAAGA 58.343 33.333 13.99 13.99 0.00 2.52
866 1051 8.848474 TGATTTACTCCCTCTGTTCTTTAAAG 57.152 34.615 9.04 9.04 0.00 1.85
867 1052 9.807921 AATGATTTACTCCCTCTGTTCTTTAAA 57.192 29.630 0.00 0.00 0.00 1.52
868 1053 9.807921 AAATGATTTACTCCCTCTGTTCTTTAA 57.192 29.630 0.00 0.00 0.00 1.52
870 1055 9.454859 CTAAATGATTTACTCCCTCTGTTCTTT 57.545 33.333 0.00 0.00 0.00 2.52
871 1056 8.606830 ACTAAATGATTTACTCCCTCTGTTCTT 58.393 33.333 0.00 0.00 0.00 2.52
872 1057 8.152023 ACTAAATGATTTACTCCCTCTGTTCT 57.848 34.615 0.00 0.00 0.00 3.01
873 1058 9.535878 CTACTAAATGATTTACTCCCTCTGTTC 57.464 37.037 0.00 0.00 0.00 3.18
874 1059 8.487028 CCTACTAAATGATTTACTCCCTCTGTT 58.513 37.037 0.00 0.00 0.00 3.16
875 1060 7.844779 TCCTACTAAATGATTTACTCCCTCTGT 59.155 37.037 0.00 0.00 0.00 3.41
876 1061 8.251383 TCCTACTAAATGATTTACTCCCTCTG 57.749 38.462 0.00 0.00 0.00 3.35
877 1062 9.453830 AATCCTACTAAATGATTTACTCCCTCT 57.546 33.333 0.00 0.00 0.00 3.69
910 1095 8.188799 CGATACTGTGGTAGAACTGAGATTTTA 58.811 37.037 0.00 0.00 0.00 1.52
922 1107 1.108776 GTGGCCGATACTGTGGTAGA 58.891 55.000 0.00 0.00 0.00 2.59
923 1108 1.067212 GAGTGGCCGATACTGTGGTAG 59.933 57.143 0.00 0.00 0.00 3.18
937 1128 0.469144 TGGAAAAACAGGGGAGTGGC 60.469 55.000 0.00 0.00 0.00 5.01
955 1146 1.330305 CGATCGCGTCAAATCGACTTG 60.330 52.381 19.55 0.00 45.83 3.16
956 1147 0.914551 CGATCGCGTCAAATCGACTT 59.085 50.000 19.55 0.00 45.83 3.01
966 1157 2.731348 GCTGGATCCGATCGCGTC 60.731 66.667 10.32 9.42 35.23 5.19
1165 1356 4.144727 GAGGGCGGAGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1224 1433 0.404426 TGAGAGAAGGGGACTCACGA 59.596 55.000 0.00 0.00 42.68 4.35
1237 1446 1.618030 GGGGAGAGGAGCTGAGAGA 59.382 63.158 0.00 0.00 0.00 3.10
1446 1676 2.363172 GCTCTGAGACCCACTCCCC 61.363 68.421 9.28 0.00 44.34 4.81
1500 1730 6.397272 TCATGGTTCTGTATCAAAATTTGGC 58.603 36.000 5.83 0.00 0.00 4.52
1542 1774 1.436600 AAGCTGAGCACTGATCAACG 58.563 50.000 7.39 0.00 0.00 4.10
1547 1779 2.630158 CAAGCTAAGCTGAGCACTGAT 58.370 47.619 25.38 0.27 45.43 2.90
1618 1895 3.319405 TCTGAACACTCCTCTCACTGTTC 59.681 47.826 0.00 0.00 41.87 3.18
1688 1970 5.234752 TGATGTATGTACCCGACAATATGC 58.765 41.667 0.00 0.00 42.78 3.14
1811 2094 5.300969 TGAGTGCATCAAATTAGCAAGTC 57.699 39.130 0.00 0.00 40.35 3.01
1840 2125 9.973246 CATAAACTACTGTGCAAACTAGTAATG 57.027 33.333 0.00 0.00 0.00 1.90
1841 2126 9.938280 TCATAAACTACTGTGCAAACTAGTAAT 57.062 29.630 0.00 0.00 0.00 1.89
1852 2137 6.086222 CCACAAACATCATAAACTACTGTGC 58.914 40.000 0.00 0.00 32.29 4.57
1867 2152 5.561725 GCAACAAACAAACAACCACAAACAT 60.562 36.000 0.00 0.00 0.00 2.71
1872 2157 2.417719 GGCAACAAACAAACAACCACA 58.582 42.857 0.00 0.00 0.00 4.17
1995 2280 2.237143 AGAACCCAGCATCGATTTCTGA 59.763 45.455 20.32 0.00 0.00 3.27
2043 2328 0.813184 CGCTCAACATCCCAGCAAAT 59.187 50.000 0.00 0.00 32.27 2.32
2109 2394 4.339530 GGTTAGGCCTTTGATCCTTTCATC 59.660 45.833 12.58 0.00 33.34 2.92
2110 2395 4.281657 GGTTAGGCCTTTGATCCTTTCAT 58.718 43.478 12.58 0.00 33.34 2.57
2111 2396 3.563479 GGGTTAGGCCTTTGATCCTTTCA 60.563 47.826 12.58 0.00 37.43 2.69
2112 2397 3.024547 GGGTTAGGCCTTTGATCCTTTC 58.975 50.000 12.58 0.00 37.43 2.62
2113 2398 2.292257 GGGGTTAGGCCTTTGATCCTTT 60.292 50.000 12.58 0.00 37.43 3.11
2114 2399 1.288037 GGGGTTAGGCCTTTGATCCTT 59.712 52.381 12.58 0.00 37.43 3.36
2115 2400 0.927029 GGGGTTAGGCCTTTGATCCT 59.073 55.000 12.58 0.00 37.43 3.24
2116 2401 0.629058 TGGGGTTAGGCCTTTGATCC 59.371 55.000 12.58 7.47 37.43 3.36
2239 2532 9.008965 TGCTGCAAATACTACTTTAAGATTGAA 57.991 29.630 0.00 0.00 0.00 2.69
2571 2866 9.515226 TTTAAGATGGCAACTTTACTAGTGAAT 57.485 29.630 15.44 0.00 37.12 2.57
2586 2881 5.476599 AGTGTTGCAATACTTTAAGATGGCA 59.523 36.000 21.72 0.99 0.00 4.92
3019 3345 7.832187 CCTTCCATACTTTTATCCAGTTAACCA 59.168 37.037 0.88 0.00 0.00 3.67
3206 3532 8.060090 ACTGAACAGATAAAGTTCGTAAAAACG 58.940 33.333 8.87 0.00 46.34 3.60
3209 3535 8.882415 AGACTGAACAGATAAAGTTCGTAAAA 57.118 30.769 8.87 0.00 46.34 1.52
3303 3629 9.838975 TCATTTTGTAAACATGCAAGTACATAG 57.161 29.630 0.00 0.00 0.00 2.23
3372 3699 6.521162 TCACTACAGTAGTCAAAATGCTTGA 58.479 36.000 10.54 0.00 36.76 3.02
3446 3773 0.674895 CTAACCCACCAGCAGAGCAC 60.675 60.000 0.00 0.00 0.00 4.40
3608 3935 5.198207 GGGGGTTGCAAATAGTATACAAGT 58.802 41.667 0.00 0.00 0.00 3.16
3609 3936 5.197451 TGGGGGTTGCAAATAGTATACAAG 58.803 41.667 0.00 0.00 0.00 3.16
3613 3940 3.435890 GGCTGGGGGTTGCAAATAGTATA 60.436 47.826 0.00 0.00 0.00 1.47
3706 4158 5.794687 TTAACGTTTGGAGATGCATGTAG 57.205 39.130 5.91 0.00 0.00 2.74
3769 4261 9.754382 TCTCTCAGTTTTATTTTTGTAGTACGT 57.246 29.630 0.00 0.00 0.00 3.57
3866 4358 6.379133 TGAACTAGTATACGTCAGAAATGGGT 59.621 38.462 0.00 0.00 0.00 4.51
3905 4397 7.350767 TGCAATATTTCTGCTTGCTGATGCA 62.351 40.000 17.37 17.37 44.29 3.96
3939 4438 8.433421 TCCTGACTTACAAAAAGAGTTAACTG 57.567 34.615 14.14 0.40 0.00 3.16
4044 4563 5.067273 ACACGAGTAGATAGAATCTGAGGG 58.933 45.833 0.00 0.00 40.51 4.30
4080 4599 4.878397 GGAAATGTCCTCTCTGTAATGGTG 59.122 45.833 0.00 0.00 41.24 4.17
4143 4662 2.640332 AGGAGAAAAGGACCTGAAGACC 59.360 50.000 0.00 0.00 32.39 3.85
4322 4902 1.538047 CAGGGCTGCAACAGTAATGT 58.462 50.000 0.50 0.00 33.43 2.71
4411 4991 5.630121 TGGTGTCCTGATGTCTTTAACAAT 58.370 37.500 0.00 0.00 42.37 2.71
4505 5085 7.042858 TGTTGCATATTGACAATTCAACACAAC 60.043 33.333 24.05 19.62 44.66 3.32
4526 5106 6.149633 CCTGAAACAAACCTTACTATGTTGC 58.850 40.000 0.00 0.00 36.23 4.17
4676 5256 7.672983 ATGTAAGGTACATTCTGTTTGTCAG 57.327 36.000 0.00 0.00 46.69 3.51
4707 5287 8.303156 CCATGAAACACAGGTGATTAATTGTAA 58.697 33.333 6.40 0.00 0.00 2.41
4710 5290 6.690530 ACCATGAAACACAGGTGATTAATTG 58.309 36.000 6.40 0.00 32.04 2.32
4725 5306 5.376854 AACATGTAAGCAGACCATGAAAC 57.623 39.130 0.00 0.00 38.56 2.78
4731 5312 4.098914 AGGAAAACATGTAAGCAGACCA 57.901 40.909 0.00 0.00 0.00 4.02
4737 5318 5.600908 TTGACGTAGGAAAACATGTAAGC 57.399 39.130 0.00 0.00 0.00 3.09
4754 5335 7.406799 AAACCTGCAAAGATTTTATTTGACG 57.593 32.000 2.76 0.00 39.50 4.35
4788 5369 0.938637 CTCTCATCGCGTCATGGAGC 60.939 60.000 5.77 0.00 0.00 4.70
4791 5372 1.926561 TTTCTCTCATCGCGTCATGG 58.073 50.000 5.77 0.00 0.00 3.66
4937 5518 6.089016 CGTCTGTTGCGTTTTCTAATCTCTAA 59.911 38.462 0.00 0.00 0.00 2.10
5062 5659 0.391927 TCATTAAACCCAGACCGCCG 60.392 55.000 0.00 0.00 0.00 6.46
5109 5706 4.460505 GTGTAAAAATGAAGACGTTCGGG 58.539 43.478 0.00 0.00 35.17 5.14
5110 5707 4.024725 TGGTGTAAAAATGAAGACGTTCGG 60.025 41.667 0.00 0.00 35.17 4.30
5115 5713 4.452455 AGAGCTGGTGTAAAAATGAAGACG 59.548 41.667 0.00 0.00 0.00 4.18
5136 5734 3.966979 ACAACATGTGGGCATATCAAGA 58.033 40.909 4.95 0.00 33.30 3.02
5163 5761 2.571653 TGTAAGCTAGGTTCAGGCATGT 59.428 45.455 11.11 0.00 0.00 3.21
5191 5789 7.452676 ATCGGTTTGATAAGCACTCTATGCAG 61.453 42.308 1.20 0.00 46.50 4.41
5192 5790 5.684813 ATCGGTTTGATAAGCACTCTATGCA 60.685 40.000 1.20 0.00 46.50 3.96
5218 5816 4.111375 ACTCGAATATCACCACTGTCAC 57.889 45.455 0.00 0.00 0.00 3.67
5240 5838 5.665916 TTGCATGACTGAAGACTGAGATA 57.334 39.130 0.00 0.00 0.00 1.98
5241 5839 4.548451 TTGCATGACTGAAGACTGAGAT 57.452 40.909 0.00 0.00 0.00 2.75
5298 8725 2.758089 GCTTCTGCCATGGTCTGCG 61.758 63.158 14.67 0.84 0.00 5.18
5317 8744 2.879026 GTCAAAGAACCAGTCTCCAACC 59.121 50.000 0.00 0.00 34.56 3.77
5550 13219 6.530019 AACCATGGTCTCCATATTGTTTTC 57.470 37.500 20.07 0.00 43.15 2.29
5561 13231 3.319122 GCCAATATGAAACCATGGTCTCC 59.681 47.826 20.07 10.83 33.63 3.71
5757 13472 6.464895 TTTAAAGGTTTACCGTACACGATG 57.535 37.500 2.76 0.00 43.02 3.84
5760 13475 7.854916 TGAAATTTTAAAGGTTTACCGTACACG 59.145 33.333 0.00 0.00 42.08 4.49
5871 13597 4.285775 AGGTGGAGGAGAAGAAGAGAAAAG 59.714 45.833 0.00 0.00 0.00 2.27
5876 13602 3.440127 AGAAGGTGGAGGAGAAGAAGAG 58.560 50.000 0.00 0.00 0.00 2.85
5891 13617 3.523681 AAGGGGCCAGGGAGAAGGT 62.524 63.158 4.39 0.00 0.00 3.50
5892 13618 2.615288 AAGGGGCCAGGGAGAAGG 60.615 66.667 4.39 0.00 0.00 3.46
5893 13619 1.284841 ATGAAGGGGCCAGGGAGAAG 61.285 60.000 4.39 0.00 0.00 2.85
5894 13620 0.850883 AATGAAGGGGCCAGGGAGAA 60.851 55.000 4.39 0.00 0.00 2.87
5895 13621 1.230281 AATGAAGGGGCCAGGGAGA 60.230 57.895 4.39 0.00 0.00 3.71
5896 13622 1.076485 CAATGAAGGGGCCAGGGAG 60.076 63.158 4.39 0.00 0.00 4.30
5897 13623 1.543642 TCAATGAAGGGGCCAGGGA 60.544 57.895 4.39 0.00 0.00 4.20
5898 13624 1.076485 CTCAATGAAGGGGCCAGGG 60.076 63.158 4.39 0.00 0.00 4.45
5899 13625 1.076485 CCTCAATGAAGGGGCCAGG 60.076 63.158 4.39 0.00 32.35 4.45
5900 13626 4.672251 CCTCAATGAAGGGGCCAG 57.328 61.111 4.39 0.00 32.35 4.85
5993 15158 5.190726 TCATAACACCATGTGACCCAAGATA 59.809 40.000 0.49 0.00 36.96 1.98
6028 15211 1.000274 GCTTAAATAGGGGCGCCATTG 60.000 52.381 30.85 8.93 0.00 2.82
6034 15217 3.126001 TCTCATGCTTAAATAGGGGCG 57.874 47.619 0.00 0.00 0.00 6.13
6061 15247 8.655651 TTTGTGAAATTTTGTTCCTATTCCAC 57.344 30.769 0.00 0.00 0.00 4.02
6064 15250 9.196552 CCTCTTTGTGAAATTTTGTTCCTATTC 57.803 33.333 0.00 0.00 0.00 1.75
6072 15258 4.751767 TGGCCTCTTTGTGAAATTTTGT 57.248 36.364 3.32 0.00 0.00 2.83
6074 15260 4.594491 AGGATGGCCTCTTTGTGAAATTTT 59.406 37.500 3.32 0.00 42.19 1.82
6082 15268 3.372025 GGTATGAAGGATGGCCTCTTTGT 60.372 47.826 3.32 1.62 46.28 2.83
6083 15269 3.117738 AGGTATGAAGGATGGCCTCTTTG 60.118 47.826 3.32 0.00 46.28 2.77
6084 15270 3.126453 AGGTATGAAGGATGGCCTCTTT 58.874 45.455 3.32 1.43 46.28 2.52
6085 15271 2.781667 AGGTATGAAGGATGGCCTCTT 58.218 47.619 3.32 5.21 46.28 2.85
6100 15286 2.305927 CCCATTGATCGGCCTTAGGTAT 59.694 50.000 0.00 0.00 0.00 2.73
6107 15293 0.986019 TGTACCCCATTGATCGGCCT 60.986 55.000 0.00 0.00 0.00 5.19
6114 15300 5.168647 ACGATTAAACTGTACCCCATTGA 57.831 39.130 0.00 0.00 0.00 2.57
6118 15308 3.072768 ACCAACGATTAAACTGTACCCCA 59.927 43.478 0.00 0.00 0.00 4.96
6167 15359 8.498054 AATCTTATCAGTGTCCAATACTTGTG 57.502 34.615 0.00 0.00 0.00 3.33
6168 15360 9.601217 GTAATCTTATCAGTGTCCAATACTTGT 57.399 33.333 0.00 0.00 0.00 3.16
6181 15373 8.798859 AGCATCACAAAAGTAATCTTATCAGT 57.201 30.769 0.00 0.00 33.09 3.41
6199 15391 4.165779 CGTGGGTTCAAAAATAGCATCAC 58.834 43.478 0.00 0.00 0.00 3.06
6200 15392 3.192422 CCGTGGGTTCAAAAATAGCATCA 59.808 43.478 0.00 0.00 0.00 3.07
6208 15400 1.957877 GGATGTCCGTGGGTTCAAAAA 59.042 47.619 0.00 0.00 0.00 1.94
6230 15422 0.623194 TCCCGATGCTTCCAAATCCA 59.377 50.000 0.00 0.00 0.00 3.41
6263 15457 2.546899 ACTACAACCTCATAGGCACCA 58.453 47.619 0.00 0.00 39.63 4.17
6271 15465 2.235402 CGGGGTACAACTACAACCTCAT 59.765 50.000 0.00 0.00 32.99 2.90
6289 15483 2.765250 CTTGTCGACTGTCCACCGGG 62.765 65.000 17.92 0.00 0.00 5.73
6290 15484 1.372997 CTTGTCGACTGTCCACCGG 60.373 63.158 17.92 0.00 0.00 5.28
6291 15485 0.663568 GTCTTGTCGACTGTCCACCG 60.664 60.000 17.92 0.00 39.61 4.94
6292 15486 3.196613 GTCTTGTCGACTGTCCACC 57.803 57.895 17.92 0.00 39.61 4.61
6300 15494 7.081526 TGACCTTAGTAATAGTCTTGTCGAC 57.918 40.000 9.11 9.11 43.17 4.20
6303 15497 9.871238 TCAAATGACCTTAGTAATAGTCTTGTC 57.129 33.333 12.12 0.00 0.00 3.18
6358 15552 7.040409 ATGACATTTCACTTCAGGTAACTTTCC 60.040 37.037 0.00 0.00 39.20 3.13
6361 15555 6.772716 ACATGACATTTCACTTCAGGTAACTT 59.227 34.615 0.00 0.00 39.20 2.66
6362 15556 6.299141 ACATGACATTTCACTTCAGGTAACT 58.701 36.000 0.00 0.00 41.51 2.24
6363 15557 6.560253 ACATGACATTTCACTTCAGGTAAC 57.440 37.500 0.00 0.00 32.77 2.50
6364 15558 8.862325 AATACATGACATTTCACTTCAGGTAA 57.138 30.769 0.00 0.00 39.27 2.85
6398 15597 7.789831 TCCTAACCATCCATTCTAGTACTCATT 59.210 37.037 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.