Multiple sequence alignment - TraesCS1B01G041400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G041400 chr1B 100.000 3560 0 0 1 3560 20837594 20834035 0.000000e+00 6575.0
1 TraesCS1B01G041400 chr1B 86.425 442 55 5 1 438 644578412 644578852 2.490000e-131 479.0
2 TraesCS1B01G041400 chr1B 88.482 382 41 3 1 382 644574002 644574380 3.240000e-125 459.0
3 TraesCS1B01G041400 chr1B 89.655 87 9 0 1445 1531 21298804 21298718 1.040000e-20 111.0
4 TraesCS1B01G041400 chr1B 92.982 57 0 2 1737 1789 21306085 21306029 2.950000e-11 80.5
5 TraesCS1B01G041400 chr1D 90.074 2428 115 57 439 2788 15050812 15048433 0.000000e+00 3033.0
6 TraesCS1B01G041400 chr1D 87.414 437 48 7 1 432 454806712 454807146 2.470000e-136 496.0
7 TraesCS1B01G041400 chr1D 81.746 378 59 8 3182 3550 15045063 15044687 1.240000e-79 307.0
8 TraesCS1B01G041400 chr1D 89.344 122 6 6 1057 1176 375970477 375970361 2.860000e-31 147.0
9 TraesCS1B01G041400 chr1D 87.234 94 8 4 2822 2912 491790979 491791071 1.750000e-18 104.0
10 TraesCS1B01G041400 chr1D 90.000 60 3 1 1243 1302 375970379 375970323 1.370000e-09 75.0
11 TraesCS1B01G041400 chr1A 92.556 2015 83 32 818 2791 15516460 15518448 0.000000e+00 2828.0
12 TraesCS1B01G041400 chr1A 87.533 754 68 14 2822 3560 15522509 15523251 0.000000e+00 848.0
13 TraesCS1B01G041400 chr1A 81.902 326 33 13 2426 2744 15539683 15539989 5.900000e-63 252.0
14 TraesCS1B01G041400 chr1A 76.731 361 27 29 467 809 15516098 15516419 7.960000e-32 148.0
15 TraesCS1B01G041400 chr2D 76.636 1070 195 52 1463 2500 79233584 79232538 1.120000e-149 540.0
16 TraesCS1B01G041400 chr2D 82.278 158 21 7 2831 2984 577596701 577596547 2.880000e-26 130.0
17 TraesCS1B01G041400 chr2D 86.957 69 9 0 1814 1882 381339109 381339041 1.060000e-10 78.7
18 TraesCS1B01G041400 chr2B 76.384 1084 203 47 1448 2500 123101517 123100456 5.230000e-148 534.0
19 TraesCS1B01G041400 chr2B 89.691 97 5 4 1069 1164 68426801 68426709 6.240000e-23 119.0
20 TraesCS1B01G041400 chr2B 85.965 57 8 0 2833 2889 172977765 172977709 1.070000e-05 62.1
21 TraesCS1B01G041400 chr2B 74.834 151 28 8 2832 2977 788033510 788033365 3.840000e-05 60.2
22 TraesCS1B01G041400 chr2A 76.626 1061 178 58 1463 2500 79442518 79441505 4.070000e-144 521.0
23 TraesCS1B01G041400 chr5B 90.576 382 36 0 1 382 291100114 291100495 1.140000e-139 507.0
24 TraesCS1B01G041400 chr5B 89.556 383 35 5 1 382 282648810 282649188 6.910000e-132 481.0
25 TraesCS1B01G041400 chr5B 88.512 383 41 3 1 382 555174119 555174499 9.010000e-126 460.0
26 TraesCS1B01G041400 chr3D 86.682 443 51 8 1 438 330071543 330071104 5.340000e-133 484.0
27 TraesCS1B01G041400 chr3D 88.803 259 20 5 1050 1308 329685922 329686171 3.450000e-80 309.0
28 TraesCS1B01G041400 chr3D 91.489 94 7 1 1377 1470 329686190 329686282 1.040000e-25 128.0
29 TraesCS1B01G041400 chr7B 89.267 382 39 2 1 382 535819732 535820111 8.940000e-131 477.0
30 TraesCS1B01G041400 chr7B 91.045 201 17 1 1996 2196 577805031 577804832 1.630000e-68 270.0
31 TraesCS1B01G041400 chr4D 88.773 383 40 3 1 382 497925362 497924982 1.940000e-127 466.0
32 TraesCS1B01G041400 chr7D 89.313 131 6 6 1046 1176 185358334 185358212 1.320000e-34 158.0
33 TraesCS1B01G041400 chr7A 88.550 131 6 6 1046 1176 193121632 193121511 2.210000e-32 150.0
34 TraesCS1B01G041400 chr7A 87.705 122 6 7 1057 1176 671752555 671752441 2.230000e-27 134.0
35 TraesCS1B01G041400 chr7A 87.324 71 6 1 1242 1312 669064921 669064854 1.060000e-10 78.7
36 TraesCS1B01G041400 chr5D 92.708 96 4 1 1069 1164 564234890 564234982 6.200000e-28 135.0
37 TraesCS1B01G041400 chr5D 88.571 70 5 1 1243 1312 564234977 564235043 8.190000e-12 82.4
38 TraesCS1B01G041400 chr4A 81.699 153 19 3 2827 2979 507452138 507452281 6.240000e-23 119.0
39 TraesCS1B01G041400 chr4A 77.301 163 29 5 2820 2977 21497089 21497248 4.900000e-14 89.8
40 TraesCS1B01G041400 chr4A 96.774 31 1 0 2828 2858 714010091 714010061 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G041400 chr1B 20834035 20837594 3559 True 6575 6575 100.0000 1 3560 1 chr1B.!!$R1 3559
1 TraesCS1B01G041400 chr1D 15044687 15050812 6125 True 1670 3033 85.9100 439 3550 2 chr1D.!!$R1 3111
2 TraesCS1B01G041400 chr1A 15516098 15518448 2350 False 1488 2828 84.6435 467 2791 2 chr1A.!!$F3 2324
3 TraesCS1B01G041400 chr1A 15522509 15523251 742 False 848 848 87.5330 2822 3560 1 chr1A.!!$F1 738
4 TraesCS1B01G041400 chr2D 79232538 79233584 1046 True 540 540 76.6360 1463 2500 1 chr2D.!!$R1 1037
5 TraesCS1B01G041400 chr2B 123100456 123101517 1061 True 534 534 76.3840 1448 2500 1 chr2B.!!$R2 1052
6 TraesCS1B01G041400 chr2A 79441505 79442518 1013 True 521 521 76.6260 1463 2500 1 chr2A.!!$R1 1037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.036765 TACTTGTGTCCCCGACATGC 60.037 55.0 0.0 0.0 44.63 4.06 F
402 403 0.179001 AGTTGGACCCCAAACGAAGG 60.179 55.0 0.0 0.0 45.73 3.46 F
1200 1296 0.108424 CCTTCGTCTCCTTGCTCCTG 60.108 60.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1081 1177 0.107945 AGCTCCTTCATCGTCTTGCC 60.108 55.0 0.00 0.0 0.0 4.52 R
1980 2121 1.578583 CCTCCGTGACGTGTTTCTTT 58.421 50.0 3.64 0.0 0.0 2.52 R
3081 6249 0.106967 TGCAGCACTAACCAACACCA 60.107 50.0 0.00 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.224324 TCGTATCCCCTCTGCCGC 61.224 66.667 0.00 0.00 0.00 6.53
18 19 4.301027 CGTATCCCCTCTGCCGCC 62.301 72.222 0.00 0.00 0.00 6.13
19 20 4.301027 GTATCCCCTCTGCCGCCG 62.301 72.222 0.00 0.00 0.00 6.46
36 37 3.044305 GGCTACGATGGCGATGGC 61.044 66.667 0.00 0.00 41.64 4.40
46 47 2.044946 GCGATGGCCAAACCTCCT 60.045 61.111 10.96 0.00 40.22 3.69
47 48 2.115291 GCGATGGCCAAACCTCCTC 61.115 63.158 10.96 0.00 40.22 3.71
48 49 1.452108 CGATGGCCAAACCTCCTCC 60.452 63.158 10.96 0.00 40.22 4.30
49 50 1.452108 GATGGCCAAACCTCCTCCG 60.452 63.158 10.96 0.00 40.22 4.63
50 51 1.910580 GATGGCCAAACCTCCTCCGA 61.911 60.000 10.96 0.00 40.22 4.55
51 52 1.281925 ATGGCCAAACCTCCTCCGAT 61.282 55.000 10.96 0.00 40.22 4.18
52 53 1.153147 GGCCAAACCTCCTCCGATC 60.153 63.158 0.00 0.00 34.51 3.69
53 54 1.627297 GGCCAAACCTCCTCCGATCT 61.627 60.000 0.00 0.00 34.51 2.75
54 55 1.120530 GCCAAACCTCCTCCGATCTA 58.879 55.000 0.00 0.00 0.00 1.98
55 56 1.202545 GCCAAACCTCCTCCGATCTAC 60.203 57.143 0.00 0.00 0.00 2.59
56 57 1.067212 CCAAACCTCCTCCGATCTACG 59.933 57.143 0.00 0.00 42.18 3.51
68 69 2.913613 CGATCTACGGCCTAAACTACG 58.086 52.381 0.00 0.00 38.46 3.51
69 70 2.350197 CGATCTACGGCCTAAACTACGG 60.350 54.545 0.00 0.00 38.46 4.02
70 71 0.740737 TCTACGGCCTAAACTACGGC 59.259 55.000 0.00 0.00 45.55 5.68
88 89 4.025401 GAAAGCGCGGGTGTGGTG 62.025 66.667 8.83 0.00 36.26 4.17
96 97 3.661648 GGGTGTGGTGGAGGCCAT 61.662 66.667 5.01 0.00 41.08 4.40
97 98 2.361610 GGTGTGGTGGAGGCCATG 60.362 66.667 5.01 0.00 41.08 3.66
98 99 2.436109 GTGTGGTGGAGGCCATGT 59.564 61.111 5.01 0.00 41.08 3.21
99 100 1.675641 GTGTGGTGGAGGCCATGTC 60.676 63.158 5.01 0.00 41.08 3.06
100 101 2.152729 TGTGGTGGAGGCCATGTCA 61.153 57.895 5.01 0.00 41.08 3.58
101 102 1.074775 GTGGTGGAGGCCATGTCAA 59.925 57.895 5.01 0.00 41.08 3.18
102 103 0.962356 GTGGTGGAGGCCATGTCAAG 60.962 60.000 5.01 0.00 41.08 3.02
103 104 1.133181 TGGTGGAGGCCATGTCAAGA 61.133 55.000 5.01 0.00 35.28 3.02
104 105 0.678048 GGTGGAGGCCATGTCAAGAC 60.678 60.000 5.01 0.00 35.28 3.01
105 106 1.021390 GTGGAGGCCATGTCAAGACG 61.021 60.000 5.01 0.00 35.28 4.18
106 107 1.296715 GGAGGCCATGTCAAGACGT 59.703 57.895 5.01 0.00 0.00 4.34
107 108 1.021390 GGAGGCCATGTCAAGACGTG 61.021 60.000 5.01 14.04 45.43 4.49
113 114 2.036556 CATGTCAAGACGTGGTTTGC 57.963 50.000 13.33 0.00 42.91 3.68
114 115 1.603802 CATGTCAAGACGTGGTTTGCT 59.396 47.619 13.33 0.00 42.91 3.91
115 116 2.605837 TGTCAAGACGTGGTTTGCTA 57.394 45.000 0.00 0.00 0.00 3.49
116 117 3.120321 TGTCAAGACGTGGTTTGCTAT 57.880 42.857 0.00 0.00 0.00 2.97
117 118 2.805671 TGTCAAGACGTGGTTTGCTATG 59.194 45.455 0.00 0.00 0.00 2.23
118 119 2.159627 GTCAAGACGTGGTTTGCTATGG 59.840 50.000 0.00 0.00 0.00 2.74
119 120 2.037902 TCAAGACGTGGTTTGCTATGGA 59.962 45.455 0.00 0.00 0.00 3.41
120 121 2.094762 AGACGTGGTTTGCTATGGAC 57.905 50.000 0.00 0.00 0.00 4.02
121 122 0.719465 GACGTGGTTTGCTATGGACG 59.281 55.000 0.00 0.00 0.00 4.79
122 123 0.672401 ACGTGGTTTGCTATGGACGG 60.672 55.000 0.00 0.00 0.00 4.79
123 124 1.800681 GTGGTTTGCTATGGACGGC 59.199 57.895 0.00 0.00 0.00 5.68
124 125 1.377987 TGGTTTGCTATGGACGGCC 60.378 57.895 0.00 0.00 0.00 6.13
125 126 2.469516 GGTTTGCTATGGACGGCCG 61.470 63.158 26.86 26.86 36.79 6.13
126 127 2.124901 TTTGCTATGGACGGCCGG 60.125 61.111 31.76 11.67 36.79 6.13
127 128 3.690685 TTTGCTATGGACGGCCGGG 62.691 63.158 31.76 12.59 36.79 5.73
158 159 3.231736 GGAGGCGGCCGGAGAATA 61.232 66.667 29.38 0.00 0.00 1.75
159 160 2.340443 GAGGCGGCCGGAGAATAG 59.660 66.667 29.38 0.00 0.00 1.73
160 161 3.867700 GAGGCGGCCGGAGAATAGC 62.868 68.421 29.38 6.89 0.00 2.97
201 202 3.787001 GCGGGAGAGGGGGTGAAG 61.787 72.222 0.00 0.00 0.00 3.02
202 203 3.083997 CGGGAGAGGGGGTGAAGG 61.084 72.222 0.00 0.00 0.00 3.46
203 204 3.412408 GGGAGAGGGGGTGAAGGC 61.412 72.222 0.00 0.00 0.00 4.35
204 205 3.787001 GGAGAGGGGGTGAAGGCG 61.787 72.222 0.00 0.00 0.00 5.52
205 206 3.003763 GAGAGGGGGTGAAGGCGT 61.004 66.667 0.00 0.00 0.00 5.68
206 207 2.529389 AGAGGGGGTGAAGGCGTT 60.529 61.111 0.00 0.00 0.00 4.84
207 208 2.359975 GAGGGGGTGAAGGCGTTG 60.360 66.667 0.00 0.00 0.00 4.10
208 209 2.852075 AGGGGGTGAAGGCGTTGA 60.852 61.111 0.00 0.00 0.00 3.18
209 210 2.114411 GGGGGTGAAGGCGTTGAA 59.886 61.111 0.00 0.00 0.00 2.69
210 211 1.529713 GGGGGTGAAGGCGTTGAAA 60.530 57.895 0.00 0.00 0.00 2.69
211 212 0.898326 GGGGGTGAAGGCGTTGAAAT 60.898 55.000 0.00 0.00 0.00 2.17
212 213 0.526211 GGGGTGAAGGCGTTGAAATC 59.474 55.000 0.00 0.00 0.00 2.17
213 214 0.168128 GGGTGAAGGCGTTGAAATCG 59.832 55.000 0.00 0.00 0.00 3.34
214 215 1.153353 GGTGAAGGCGTTGAAATCGA 58.847 50.000 0.00 0.00 0.00 3.59
215 216 1.533731 GGTGAAGGCGTTGAAATCGAA 59.466 47.619 0.00 0.00 0.00 3.71
216 217 2.161609 GGTGAAGGCGTTGAAATCGAAT 59.838 45.455 0.00 0.00 0.00 3.34
217 218 3.163594 GTGAAGGCGTTGAAATCGAATG 58.836 45.455 0.00 0.00 0.00 2.67
218 219 2.161410 TGAAGGCGTTGAAATCGAATGG 59.839 45.455 0.00 0.00 0.00 3.16
219 220 1.094785 AGGCGTTGAAATCGAATGGG 58.905 50.000 0.00 0.00 0.00 4.00
220 221 1.091537 GGCGTTGAAATCGAATGGGA 58.908 50.000 0.00 0.00 0.00 4.37
221 222 1.202143 GGCGTTGAAATCGAATGGGAC 60.202 52.381 0.00 0.00 0.00 4.46
222 223 1.737793 GCGTTGAAATCGAATGGGACT 59.262 47.619 0.00 0.00 0.00 3.85
223 224 2.933906 GCGTTGAAATCGAATGGGACTA 59.066 45.455 0.00 0.00 0.00 2.59
224 225 3.242316 GCGTTGAAATCGAATGGGACTAC 60.242 47.826 0.00 0.00 0.00 2.73
225 226 4.181578 CGTTGAAATCGAATGGGACTACT 58.818 43.478 0.00 0.00 0.00 2.57
226 227 4.630069 CGTTGAAATCGAATGGGACTACTT 59.370 41.667 0.00 0.00 0.00 2.24
227 228 5.445939 CGTTGAAATCGAATGGGACTACTTG 60.446 44.000 0.00 0.00 0.00 3.16
228 229 5.160607 TGAAATCGAATGGGACTACTTGT 57.839 39.130 0.00 0.00 0.00 3.16
229 230 4.935205 TGAAATCGAATGGGACTACTTGTG 59.065 41.667 0.00 0.00 0.00 3.33
230 231 4.553330 AATCGAATGGGACTACTTGTGT 57.447 40.909 0.00 0.00 0.00 3.72
231 232 3.587797 TCGAATGGGACTACTTGTGTC 57.412 47.619 0.00 0.00 0.00 3.67
236 237 2.662309 GGACTACTTGTGTCCCCGA 58.338 57.895 1.76 0.00 46.01 5.14
237 238 0.245813 GGACTACTTGTGTCCCCGAC 59.754 60.000 1.76 0.00 46.01 4.79
238 239 0.963962 GACTACTTGTGTCCCCGACA 59.036 55.000 0.00 0.00 40.50 4.35
239 240 1.549170 GACTACTTGTGTCCCCGACAT 59.451 52.381 0.00 0.00 44.63 3.06
240 241 1.275291 ACTACTTGTGTCCCCGACATG 59.725 52.381 0.00 0.00 44.63 3.21
241 242 0.036765 TACTTGTGTCCCCGACATGC 60.037 55.000 0.00 0.00 44.63 4.06
242 243 2.358125 TTGTGTCCCCGACATGCG 60.358 61.111 0.00 0.00 44.63 4.73
270 271 4.947147 GGACAAGGGCGTGTGGCA 62.947 66.667 0.00 0.00 46.16 4.92
271 272 2.904866 GACAAGGGCGTGTGGCAA 60.905 61.111 0.00 0.00 46.16 4.52
272 273 2.906897 ACAAGGGCGTGTGGCAAG 60.907 61.111 0.00 0.00 46.16 4.01
273 274 4.347453 CAAGGGCGTGTGGCAAGC 62.347 66.667 0.00 0.00 46.16 4.01
279 280 4.988598 CGTGTGGCAAGCCCGTCT 62.989 66.667 8.89 0.00 35.87 4.18
280 281 3.357079 GTGTGGCAAGCCCGTCTG 61.357 66.667 8.89 0.00 35.87 3.51
286 287 2.434884 CAAGCCCGTCTGCGTGAT 60.435 61.111 0.00 0.00 42.33 3.06
287 288 1.153647 CAAGCCCGTCTGCGTGATA 60.154 57.895 0.00 0.00 42.33 2.15
288 289 0.530650 CAAGCCCGTCTGCGTGATAT 60.531 55.000 0.00 0.00 42.33 1.63
289 290 0.249489 AAGCCCGTCTGCGTGATATC 60.249 55.000 0.00 0.00 36.15 1.63
290 291 1.664965 GCCCGTCTGCGTGATATCC 60.665 63.158 0.00 0.00 36.15 2.59
291 292 1.371758 CCCGTCTGCGTGATATCCG 60.372 63.158 0.00 4.84 36.15 4.18
292 293 1.359117 CCGTCTGCGTGATATCCGT 59.641 57.895 12.97 0.00 36.15 4.69
293 294 0.248907 CCGTCTGCGTGATATCCGTT 60.249 55.000 12.97 0.00 36.15 4.44
294 295 1.556564 CGTCTGCGTGATATCCGTTT 58.443 50.000 12.97 0.00 0.00 3.60
295 296 1.517276 CGTCTGCGTGATATCCGTTTC 59.483 52.381 12.97 1.18 0.00 2.78
296 297 2.536365 GTCTGCGTGATATCCGTTTCA 58.464 47.619 12.97 4.70 0.00 2.69
297 298 2.281762 GTCTGCGTGATATCCGTTTCAC 59.718 50.000 12.97 0.00 39.07 3.18
298 299 1.593006 CTGCGTGATATCCGTTTCACC 59.407 52.381 12.97 0.10 39.23 4.02
299 300 0.935196 GCGTGATATCCGTTTCACCC 59.065 55.000 12.97 0.00 39.23 4.61
300 301 1.472728 GCGTGATATCCGTTTCACCCT 60.473 52.381 12.97 0.00 39.23 4.34
301 302 2.223876 GCGTGATATCCGTTTCACCCTA 60.224 50.000 12.97 0.00 39.23 3.53
302 303 3.738899 GCGTGATATCCGTTTCACCCTAA 60.739 47.826 12.97 0.00 39.23 2.69
303 304 4.435425 CGTGATATCCGTTTCACCCTAAA 58.565 43.478 0.00 0.00 39.23 1.85
304 305 4.269363 CGTGATATCCGTTTCACCCTAAAC 59.731 45.833 0.00 0.00 39.23 2.01
305 306 5.425630 GTGATATCCGTTTCACCCTAAACT 58.574 41.667 0.00 0.00 37.24 2.66
306 307 5.522824 GTGATATCCGTTTCACCCTAAACTC 59.477 44.000 0.00 0.00 37.24 3.01
307 308 2.443887 TCCGTTTCACCCTAAACTCG 57.556 50.000 0.00 0.00 37.24 4.18
308 309 1.001181 TCCGTTTCACCCTAAACTCGG 59.999 52.381 0.00 0.00 37.24 4.63
309 310 0.794473 CGTTTCACCCTAAACTCGGC 59.206 55.000 0.00 0.00 37.24 5.54
310 311 0.794473 GTTTCACCCTAAACTCGGCG 59.206 55.000 0.00 0.00 36.60 6.46
311 312 0.952010 TTTCACCCTAAACTCGGCGC 60.952 55.000 0.00 0.00 0.00 6.53
312 313 2.047655 CACCCTAAACTCGGCGCA 60.048 61.111 10.83 0.00 0.00 6.09
313 314 1.669760 CACCCTAAACTCGGCGCAA 60.670 57.895 10.83 0.00 0.00 4.85
314 315 1.375523 ACCCTAAACTCGGCGCAAG 60.376 57.895 10.83 8.81 43.44 4.01
315 316 1.375523 CCCTAAACTCGGCGCAAGT 60.376 57.895 10.83 9.58 41.68 3.16
316 317 0.953960 CCCTAAACTCGGCGCAAGTT 60.954 55.000 18.46 18.46 38.59 2.66
317 318 0.872388 CCTAAACTCGGCGCAAGTTT 59.128 50.000 30.44 30.44 46.04 2.66
318 319 1.399727 CCTAAACTCGGCGCAAGTTTG 60.400 52.381 33.03 25.37 44.47 2.93
319 320 1.529438 CTAAACTCGGCGCAAGTTTGA 59.471 47.619 33.03 21.90 44.47 2.69
320 321 0.307760 AAACTCGGCGCAAGTTTGAG 59.692 50.000 28.61 18.41 43.46 3.02
325 326 4.404654 GCGCAAGTTTGAGCCGGG 62.405 66.667 0.30 0.00 46.30 5.73
326 327 3.737172 CGCAAGTTTGAGCCGGGG 61.737 66.667 2.18 0.00 0.00 5.73
327 328 2.282180 GCAAGTTTGAGCCGGGGA 60.282 61.111 2.18 0.00 0.00 4.81
328 329 1.678970 GCAAGTTTGAGCCGGGGAT 60.679 57.895 2.18 0.00 0.00 3.85
329 330 1.937546 GCAAGTTTGAGCCGGGGATG 61.938 60.000 2.18 0.00 0.00 3.51
330 331 1.000896 AAGTTTGAGCCGGGGATGG 60.001 57.895 2.18 0.00 0.00 3.51
331 332 1.497309 AAGTTTGAGCCGGGGATGGA 61.497 55.000 2.18 0.00 0.00 3.41
332 333 1.227383 GTTTGAGCCGGGGATGGAT 59.773 57.895 2.18 0.00 0.00 3.41
333 334 0.819666 GTTTGAGCCGGGGATGGATC 60.820 60.000 2.18 0.00 44.73 3.36
335 336 2.917751 GAGCCGGGGATGGATCGA 60.918 66.667 2.18 0.00 34.27 3.59
336 337 2.445845 AGCCGGGGATGGATCGAA 60.446 61.111 2.18 0.00 0.00 3.71
337 338 2.040009 GAGCCGGGGATGGATCGAAA 62.040 60.000 2.18 0.00 34.27 3.46
338 339 1.153046 GCCGGGGATGGATCGAAAA 60.153 57.895 2.18 0.00 0.00 2.29
339 340 1.444917 GCCGGGGATGGATCGAAAAC 61.445 60.000 2.18 0.00 0.00 2.43
340 341 1.157870 CCGGGGATGGATCGAAAACG 61.158 60.000 0.00 0.00 0.00 3.60
341 342 0.179094 CGGGGATGGATCGAAAACGA 60.179 55.000 0.00 0.00 0.00 3.85
342 343 1.741055 CGGGGATGGATCGAAAACGAA 60.741 52.381 0.00 0.00 0.00 3.85
343 344 1.669265 GGGGATGGATCGAAAACGAAC 59.331 52.381 0.00 0.00 0.00 3.95
344 345 2.352388 GGGATGGATCGAAAACGAACA 58.648 47.619 0.00 0.00 0.00 3.18
345 346 2.943033 GGGATGGATCGAAAACGAACAT 59.057 45.455 0.00 0.00 0.00 2.71
346 347 4.124238 GGGATGGATCGAAAACGAACATA 58.876 43.478 0.00 0.00 0.00 2.29
347 348 4.573201 GGGATGGATCGAAAACGAACATAA 59.427 41.667 0.00 0.00 0.00 1.90
348 349 5.238650 GGGATGGATCGAAAACGAACATAAT 59.761 40.000 0.00 0.00 0.00 1.28
349 350 6.363473 GGATGGATCGAAAACGAACATAATC 58.637 40.000 0.00 0.00 0.00 1.75
350 351 6.202954 GGATGGATCGAAAACGAACATAATCT 59.797 38.462 0.00 0.00 0.00 2.40
351 352 6.344572 TGGATCGAAAACGAACATAATCTG 57.655 37.500 0.00 0.00 0.00 2.90
352 353 6.103330 TGGATCGAAAACGAACATAATCTGA 58.897 36.000 0.00 0.00 0.00 3.27
353 354 6.592220 TGGATCGAAAACGAACATAATCTGAA 59.408 34.615 0.00 0.00 0.00 3.02
354 355 6.900299 GGATCGAAAACGAACATAATCTGAAC 59.100 38.462 0.00 0.00 0.00 3.18
355 356 6.772770 TCGAAAACGAACATAATCTGAACA 57.227 33.333 0.00 0.00 0.00 3.18
356 357 7.359262 TCGAAAACGAACATAATCTGAACAT 57.641 32.000 0.00 0.00 0.00 2.71
357 358 7.802738 TCGAAAACGAACATAATCTGAACATT 58.197 30.769 0.00 0.00 0.00 2.71
358 359 8.286800 TCGAAAACGAACATAATCTGAACATTT 58.713 29.630 0.00 0.00 0.00 2.32
359 360 8.357966 CGAAAACGAACATAATCTGAACATTTG 58.642 33.333 0.00 0.00 0.00 2.32
360 361 9.180678 GAAAACGAACATAATCTGAACATTTGT 57.819 29.630 0.00 0.00 0.00 2.83
361 362 8.728088 AAACGAACATAATCTGAACATTTGTC 57.272 30.769 0.00 0.00 0.00 3.18
362 363 6.842163 ACGAACATAATCTGAACATTTGTCC 58.158 36.000 0.00 0.00 0.00 4.02
363 364 5.959527 CGAACATAATCTGAACATTTGTCCG 59.040 40.000 0.00 0.00 0.00 4.79
364 365 6.402118 CGAACATAATCTGAACATTTGTCCGT 60.402 38.462 0.00 0.00 0.00 4.69
365 366 6.817765 ACATAATCTGAACATTTGTCCGTT 57.182 33.333 0.00 0.00 0.00 4.44
366 367 7.214467 ACATAATCTGAACATTTGTCCGTTT 57.786 32.000 0.00 0.00 0.00 3.60
367 368 7.083858 ACATAATCTGAACATTTGTCCGTTTG 58.916 34.615 0.00 0.00 0.00 2.93
368 369 3.980646 TCTGAACATTTGTCCGTTTGG 57.019 42.857 0.00 0.00 0.00 3.28
369 370 2.621055 TCTGAACATTTGTCCGTTTGGG 59.379 45.455 0.00 0.00 35.24 4.12
370 371 2.621055 CTGAACATTTGTCCGTTTGGGA 59.379 45.455 0.00 0.00 44.68 4.37
377 378 4.973055 TCCGTTTGGGACCGTGCG 62.973 66.667 0.00 0.00 40.94 5.34
379 380 3.273834 CGTTTGGGACCGTGCGTT 61.274 61.111 0.00 0.00 0.00 4.84
380 381 2.330041 GTTTGGGACCGTGCGTTG 59.670 61.111 0.00 0.00 0.00 4.10
381 382 2.902846 TTTGGGACCGTGCGTTGG 60.903 61.111 0.00 0.00 0.00 3.77
382 383 3.402095 TTTGGGACCGTGCGTTGGA 62.402 57.895 0.00 0.00 0.00 3.53
383 384 2.888464 TTTGGGACCGTGCGTTGGAA 62.888 55.000 0.00 0.00 0.00 3.53
384 385 3.047877 GGGACCGTGCGTTGGAAG 61.048 66.667 0.00 0.00 0.00 3.46
385 386 2.280592 GGACCGTGCGTTGGAAGT 60.281 61.111 0.00 0.00 0.00 3.01
386 387 1.890510 GGACCGTGCGTTGGAAGTT 60.891 57.895 0.00 0.00 0.00 2.66
387 388 1.278637 GACCGTGCGTTGGAAGTTG 59.721 57.895 0.00 0.00 0.00 3.16
388 389 2.113131 GACCGTGCGTTGGAAGTTGG 62.113 60.000 0.00 0.00 0.00 3.77
389 390 1.890041 CCGTGCGTTGGAAGTTGGA 60.890 57.895 0.00 0.00 0.00 3.53
390 391 1.278637 CGTGCGTTGGAAGTTGGAC 59.721 57.895 0.00 0.00 0.00 4.02
391 392 1.652563 GTGCGTTGGAAGTTGGACC 59.347 57.895 0.00 0.00 0.00 4.46
392 393 1.527380 TGCGTTGGAAGTTGGACCC 60.527 57.895 0.00 0.00 0.00 4.46
393 394 2.265904 GCGTTGGAAGTTGGACCCC 61.266 63.158 0.00 0.00 0.00 4.95
394 395 1.149627 CGTTGGAAGTTGGACCCCA 59.850 57.895 0.00 0.00 0.00 4.96
395 396 0.466555 CGTTGGAAGTTGGACCCCAA 60.467 55.000 0.00 0.00 41.69 4.12
396 397 1.783071 GTTGGAAGTTGGACCCCAAA 58.217 50.000 0.00 0.00 45.73 3.28
397 398 1.411246 GTTGGAAGTTGGACCCCAAAC 59.589 52.381 0.00 0.00 45.73 2.93
398 399 0.466555 TGGAAGTTGGACCCCAAACG 60.467 55.000 0.00 0.00 45.73 3.60
399 400 0.179012 GGAAGTTGGACCCCAAACGA 60.179 55.000 0.00 0.00 45.73 3.85
400 401 1.682740 GAAGTTGGACCCCAAACGAA 58.317 50.000 0.00 0.00 45.73 3.85
401 402 1.607148 GAAGTTGGACCCCAAACGAAG 59.393 52.381 0.00 0.00 45.73 3.79
402 403 0.179001 AGTTGGACCCCAAACGAAGG 60.179 55.000 0.00 0.00 45.73 3.46
403 404 1.529713 TTGGACCCCAAACGAAGGC 60.530 57.895 0.00 0.00 40.92 4.35
404 405 2.114411 GGACCCCAAACGAAGGCA 59.886 61.111 0.00 0.00 0.00 4.75
405 406 2.265904 GGACCCCAAACGAAGGCAC 61.266 63.158 0.00 0.00 0.00 5.01
406 407 2.203437 ACCCCAAACGAAGGCACC 60.203 61.111 0.00 0.00 0.00 5.01
407 408 3.361977 CCCCAAACGAAGGCACCG 61.362 66.667 0.00 0.00 0.00 4.94
408 409 3.361977 CCCAAACGAAGGCACCGG 61.362 66.667 0.00 0.00 0.00 5.28
409 410 2.281208 CCAAACGAAGGCACCGGA 60.281 61.111 9.46 0.00 0.00 5.14
410 411 2.613506 CCAAACGAAGGCACCGGAC 61.614 63.158 9.46 0.00 0.00 4.79
411 412 1.890041 CAAACGAAGGCACCGGACA 60.890 57.895 9.46 0.00 0.00 4.02
412 413 1.153127 AAACGAAGGCACCGGACAA 60.153 52.632 9.46 0.00 0.00 3.18
413 414 1.164041 AAACGAAGGCACCGGACAAG 61.164 55.000 9.46 0.00 0.00 3.16
414 415 2.035237 AACGAAGGCACCGGACAAGA 62.035 55.000 9.46 0.00 0.00 3.02
415 416 1.079127 CGAAGGCACCGGACAAGAT 60.079 57.895 9.46 0.00 0.00 2.40
416 417 1.361668 CGAAGGCACCGGACAAGATG 61.362 60.000 9.46 0.00 0.00 2.90
417 418 1.002134 AAGGCACCGGACAAGATGG 60.002 57.895 9.46 0.00 0.00 3.51
418 419 2.438434 GGCACCGGACAAGATGGG 60.438 66.667 9.46 0.00 0.00 4.00
419 420 2.351276 GCACCGGACAAGATGGGT 59.649 61.111 9.46 0.00 0.00 4.51
420 421 1.745489 GCACCGGACAAGATGGGTC 60.745 63.158 9.46 0.00 34.52 4.46
421 422 1.447838 CACCGGACAAGATGGGTCG 60.448 63.158 9.46 0.00 36.12 4.79
422 423 2.511600 CCGGACAAGATGGGTCGC 60.512 66.667 0.00 0.00 36.12 5.19
423 424 2.885644 CGGACAAGATGGGTCGCG 60.886 66.667 0.00 0.00 36.12 5.87
424 425 2.577059 GGACAAGATGGGTCGCGA 59.423 61.111 3.71 3.71 36.12 5.87
425 426 1.519455 GGACAAGATGGGTCGCGAG 60.519 63.158 10.24 0.00 36.12 5.03
426 427 1.519455 GACAAGATGGGTCGCGAGG 60.519 63.158 10.24 0.00 0.00 4.63
427 428 2.227089 GACAAGATGGGTCGCGAGGT 62.227 60.000 10.24 0.00 0.00 3.85
428 429 1.811266 CAAGATGGGTCGCGAGGTG 60.811 63.158 10.24 0.00 0.00 4.00
429 430 3.019003 AAGATGGGTCGCGAGGTGG 62.019 63.158 10.24 0.00 0.00 4.61
430 431 3.458163 GATGGGTCGCGAGGTGGA 61.458 66.667 10.24 0.00 0.00 4.02
431 432 3.432051 GATGGGTCGCGAGGTGGAG 62.432 68.421 10.24 0.00 0.00 3.86
432 433 3.957435 ATGGGTCGCGAGGTGGAGA 62.957 63.158 10.24 0.00 0.00 3.71
433 434 3.148279 GGGTCGCGAGGTGGAGAT 61.148 66.667 10.24 0.00 0.00 2.75
434 435 2.105128 GGTCGCGAGGTGGAGATG 59.895 66.667 10.24 0.00 0.00 2.90
435 436 2.105128 GTCGCGAGGTGGAGATGG 59.895 66.667 10.24 0.00 0.00 3.51
436 437 3.838271 TCGCGAGGTGGAGATGGC 61.838 66.667 3.71 0.00 0.00 4.40
437 438 4.899239 CGCGAGGTGGAGATGGCC 62.899 72.222 0.00 0.00 0.00 5.36
444 445 3.338250 TGGAGATGGCCCCGCTTT 61.338 61.111 0.00 0.00 0.00 3.51
452 453 0.893727 TGGCCCCGCTTTTTCTTCTC 60.894 55.000 0.00 0.00 0.00 2.87
489 492 6.985188 TTCTATGAAGAAAAATCGAGTGGG 57.015 37.500 0.00 0.00 38.81 4.61
492 495 3.408634 TGAAGAAAAATCGAGTGGGGTC 58.591 45.455 0.00 0.00 0.00 4.46
493 496 3.181449 TGAAGAAAAATCGAGTGGGGTCA 60.181 43.478 0.00 0.00 0.00 4.02
494 497 3.721087 AGAAAAATCGAGTGGGGTCAT 57.279 42.857 0.00 0.00 0.00 3.06
495 498 3.347216 AGAAAAATCGAGTGGGGTCATG 58.653 45.455 0.00 0.00 0.00 3.07
497 500 0.991920 AAATCGAGTGGGGTCATGGT 59.008 50.000 0.00 0.00 0.00 3.55
508 511 2.588620 GGGTCATGGTAGAGACGAGAT 58.411 52.381 0.00 0.00 35.63 2.75
511 514 3.003897 GGTCATGGTAGAGACGAGATGAC 59.996 52.174 0.00 0.00 37.01 3.06
513 521 3.879892 TCATGGTAGAGACGAGATGACTG 59.120 47.826 0.00 0.00 0.00 3.51
549 557 4.545208 TTACCTGTGCACAGCTAATACA 57.455 40.909 36.38 13.28 42.47 2.29
571 579 4.382114 CGCGTTCGTTGCCATGCA 62.382 61.111 0.00 0.00 36.47 3.96
647 664 3.818787 GCATCCAACGGCAGGCAG 61.819 66.667 0.00 0.00 0.00 4.85
648 665 3.136123 CATCCAACGGCAGGCAGG 61.136 66.667 0.00 0.00 0.00 4.85
703 720 3.423154 CCACGCCACGAAGCTTCC 61.423 66.667 20.62 5.66 0.00 3.46
727 744 2.978010 CGTCCACCAACACCCAGC 60.978 66.667 0.00 0.00 0.00 4.85
756 774 4.492160 GGATCGCGTCGCCAGTCA 62.492 66.667 12.44 0.00 0.00 3.41
757 775 2.951745 GATCGCGTCGCCAGTCAG 60.952 66.667 12.44 0.00 0.00 3.51
758 776 4.498520 ATCGCGTCGCCAGTCAGG 62.499 66.667 12.44 0.00 41.84 3.86
762 780 4.778415 CGTCGCCAGTCAGGTCGG 62.778 72.222 0.00 0.00 40.61 4.79
763 781 3.681835 GTCGCCAGTCAGGTCGGT 61.682 66.667 0.00 0.00 40.61 4.69
764 782 3.371063 TCGCCAGTCAGGTCGGTC 61.371 66.667 0.00 0.00 40.61 4.79
798 818 2.069776 CTTCCTCACCAAGCTCCCA 58.930 57.895 0.00 0.00 0.00 4.37
799 819 0.622665 CTTCCTCACCAAGCTCCCAT 59.377 55.000 0.00 0.00 0.00 4.00
800 820 0.620556 TTCCTCACCAAGCTCCCATC 59.379 55.000 0.00 0.00 0.00 3.51
812 837 0.766288 CTCCCATCTCCCTTCCTCCC 60.766 65.000 0.00 0.00 0.00 4.30
813 838 2.143419 CCCATCTCCCTTCCTCCCG 61.143 68.421 0.00 0.00 0.00 5.14
878 939 1.717194 CTACCGGCGCTTAAAAGACA 58.283 50.000 7.64 0.00 0.00 3.41
885 946 1.463444 GCGCTTAAAAGACACCATCGT 59.537 47.619 0.00 0.00 0.00 3.73
887 948 2.093783 CGCTTAAAAGACACCATCGTCC 59.906 50.000 0.00 0.00 36.52 4.79
888 949 3.071479 GCTTAAAAGACACCATCGTCCA 58.929 45.455 0.00 0.00 36.52 4.02
889 950 3.125316 GCTTAAAAGACACCATCGTCCAG 59.875 47.826 0.00 0.00 36.52 3.86
891 952 0.321653 AAAGACACCATCGTCCAGCC 60.322 55.000 0.00 0.00 36.52 4.85
932 1000 3.197790 CAACGCATCCCGCTCCAG 61.198 66.667 0.00 0.00 41.76 3.86
970 1039 1.371267 GCACACACGTCTCTGCGTA 60.371 57.895 0.00 0.00 43.83 4.42
998 1085 4.500116 GAGCTCTGACCGGACGGC 62.500 72.222 9.46 8.40 39.32 5.68
1074 1170 3.847602 CAGCAGGCGGAGGAGGAG 61.848 72.222 0.00 0.00 0.00 3.69
1082 1178 4.862823 GGAGGAGGAGGGGGACGG 62.863 77.778 0.00 0.00 0.00 4.79
1086 1182 3.787001 GAGGAGGGGGACGGCAAG 61.787 72.222 0.00 0.00 0.00 4.01
1087 1183 4.332543 AGGAGGGGGACGGCAAGA 62.333 66.667 0.00 0.00 0.00 3.02
1088 1184 4.097361 GGAGGGGGACGGCAAGAC 62.097 72.222 0.00 0.00 0.00 3.01
1089 1185 4.452733 GAGGGGGACGGCAAGACG 62.453 72.222 0.00 0.00 40.31 4.18
1193 1289 1.079750 GCTTCGCCTTCGTCTCCTT 60.080 57.895 0.00 0.00 36.96 3.36
1194 1290 1.355066 GCTTCGCCTTCGTCTCCTTG 61.355 60.000 0.00 0.00 36.96 3.61
1200 1296 0.108424 CCTTCGTCTCCTTGCTCCTG 60.108 60.000 0.00 0.00 0.00 3.86
1254 1350 2.125753 GACGACCTCCTGCAGCTG 60.126 66.667 10.11 10.11 0.00 4.24
1999 2140 1.260561 CAAAGAAACACGTCACGGAGG 59.739 52.381 0.35 0.00 0.00 4.30
2043 2184 3.545481 CTGGTGATCGTGTCGCGC 61.545 66.667 0.00 0.00 41.07 6.86
2721 2868 5.947443 AGTTAGCATGTGCAAGATTCTTTC 58.053 37.500 7.83 0.00 45.16 2.62
2744 2891 1.021390 CATGTGAGGGCCGAACAGAC 61.021 60.000 17.42 2.43 0.00 3.51
2785 2933 6.100668 GGAAATGAGAGTCTAAGTAAACGCT 58.899 40.000 0.00 0.00 0.00 5.07
2791 2939 7.879070 TGAGAGTCTAAGTAAACGCTTCTTTA 58.121 34.615 0.00 0.00 0.00 1.85
2792 2940 8.355169 TGAGAGTCTAAGTAAACGCTTCTTTAA 58.645 33.333 0.00 0.00 0.00 1.52
2794 2942 8.976471 AGAGTCTAAGTAAACGCTTCTTTAAAC 58.024 33.333 0.00 0.00 0.00 2.01
2797 2945 8.268738 GTCTAAGTAAACGCTTCTTTAAACGAA 58.731 33.333 3.30 2.46 0.00 3.85
2798 2946 8.816144 TCTAAGTAAACGCTTCTTTAAACGAAA 58.184 29.630 3.30 0.00 0.00 3.46
2799 2947 9.424659 CTAAGTAAACGCTTCTTTAAACGAAAA 57.575 29.630 3.30 0.00 0.00 2.29
2801 2949 9.934190 AAGTAAACGCTTCTTTAAACGAAAATA 57.066 25.926 3.30 0.00 0.00 1.40
2802 2950 9.934190 AGTAAACGCTTCTTTAAACGAAAATAA 57.066 25.926 3.30 0.00 0.00 1.40
2804 2952 8.845942 AAACGCTTCTTTAAACGAAAATAAGT 57.154 26.923 3.30 0.00 0.00 2.24
2806 2954 8.845942 ACGCTTCTTTAAACGAAAATAAGTTT 57.154 26.923 3.30 0.00 42.43 2.66
2807 2955 8.739461 ACGCTTCTTTAAACGAAAATAAGTTTG 58.261 29.630 3.30 0.00 40.34 2.93
2842 3632 2.353704 CCACAAGCTACTCGAATGTCCA 60.354 50.000 0.00 0.00 0.00 4.02
2843 3633 3.325870 CACAAGCTACTCGAATGTCCAA 58.674 45.455 0.00 0.00 0.00 3.53
2876 3666 4.349663 TTTTGCATGAGTATTACGCACC 57.650 40.909 2.19 0.00 28.88 5.01
2951 6070 4.173036 ACAATTTTACAGTTCATGCCCG 57.827 40.909 0.00 0.00 0.00 6.13
2954 6073 0.402504 TTTACAGTTCATGCCCGGGT 59.597 50.000 24.63 0.00 0.00 5.28
2963 6082 0.816825 CATGCCCGGGTTCATCTGAG 60.817 60.000 24.63 2.09 0.00 3.35
2972 6091 1.086634 GTTCATCTGAGCCCGAGCAC 61.087 60.000 0.00 0.00 43.56 4.40
2973 6092 2.202987 CATCTGAGCCCGAGCACC 60.203 66.667 0.00 0.00 43.56 5.01
2982 6101 3.283684 CCGAGCACCAAAACGCCA 61.284 61.111 0.00 0.00 0.00 5.69
2991 6110 3.009723 CACCAAAACGCCACTATCAGAT 58.990 45.455 0.00 0.00 0.00 2.90
2993 6112 4.034048 CACCAAAACGCCACTATCAGATAC 59.966 45.833 0.00 0.00 0.00 2.24
2997 6165 6.456988 CCAAAACGCCACTATCAGATACTTTC 60.457 42.308 0.00 0.00 0.00 2.62
2998 6166 4.323553 ACGCCACTATCAGATACTTTCC 57.676 45.455 0.00 0.00 0.00 3.13
3003 6171 6.278363 GCCACTATCAGATACTTTCCGTTTA 58.722 40.000 0.00 0.00 0.00 2.01
3065 6233 1.474330 GCCCCTGGTTACTGGATTTG 58.526 55.000 0.00 0.00 37.89 2.32
3081 6249 2.335316 TTTGACTTTACGGTGGTGCT 57.665 45.000 0.00 0.00 0.00 4.40
3095 6263 0.951558 GGTGCTGGTGTTGGTTAGTG 59.048 55.000 0.00 0.00 0.00 2.74
3096 6264 0.310854 GTGCTGGTGTTGGTTAGTGC 59.689 55.000 0.00 0.00 0.00 4.40
3097 6265 0.182537 TGCTGGTGTTGGTTAGTGCT 59.817 50.000 0.00 0.00 0.00 4.40
3098 6266 0.593128 GCTGGTGTTGGTTAGTGCTG 59.407 55.000 0.00 0.00 0.00 4.41
3099 6267 0.593128 CTGGTGTTGGTTAGTGCTGC 59.407 55.000 0.00 0.00 0.00 5.25
3100 6268 0.106967 TGGTGTTGGTTAGTGCTGCA 60.107 50.000 0.00 0.00 0.00 4.41
3101 6269 1.247567 GGTGTTGGTTAGTGCTGCAT 58.752 50.000 5.27 0.00 0.00 3.96
3173 6341 6.761731 TGCGTTTTTCAAAACATTATGAGG 57.238 33.333 14.05 0.00 46.52 3.86
3174 6342 6.507900 TGCGTTTTTCAAAACATTATGAGGA 58.492 32.000 14.05 0.00 46.52 3.71
3220 6388 5.440610 AGGCCAACACATTAGGATTCTAAG 58.559 41.667 5.01 0.00 38.69 2.18
3228 6397 8.788325 ACACATTAGGATTCTAAGGTACAAAC 57.212 34.615 10.65 0.00 45.25 2.93
3278 6447 2.168521 TCTCTCCGTCTGGGCTTATTTG 59.831 50.000 0.00 0.00 35.24 2.32
3280 6449 0.393808 TCCGTCTGGGCTTATTTGGC 60.394 55.000 0.00 0.00 35.24 4.52
3289 6458 0.683179 GCTTATTTGGCCCCCTCGTT 60.683 55.000 0.00 0.00 0.00 3.85
3452 6627 7.964604 AGTCAAACTTTAGCTCGAAATAAGT 57.035 32.000 0.00 0.00 0.00 2.24
3463 6638 4.694339 CTCGAAATAAGTGGGGGTCTAAG 58.306 47.826 0.00 0.00 0.00 2.18
3479 6656 5.001874 GGTCTAAGAAACCCGAATGAAGTT 58.998 41.667 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.301027 GGCGGCAGAGGGGATACG 62.301 72.222 3.07 0.00 37.60 3.06
2 3 4.301027 CGGCGGCAGAGGGGATAC 62.301 72.222 10.53 0.00 0.00 2.24
16 17 4.664677 ATCGCCATCGTAGCCGGC 62.665 66.667 21.89 21.89 40.44 6.13
17 18 2.734723 CATCGCCATCGTAGCCGG 60.735 66.667 0.00 0.00 36.96 6.13
18 19 2.734723 CCATCGCCATCGTAGCCG 60.735 66.667 0.00 0.00 36.96 5.52
19 20 3.044305 GCCATCGCCATCGTAGCC 61.044 66.667 0.00 0.00 36.96 3.93
29 30 2.044946 AGGAGGTTTGGCCATCGC 60.045 61.111 6.09 0.89 40.61 4.58
30 31 1.452108 GGAGGAGGTTTGGCCATCG 60.452 63.158 6.09 0.00 40.61 3.84
31 32 1.452108 CGGAGGAGGTTTGGCCATC 60.452 63.158 6.09 0.00 40.61 3.51
32 33 1.281925 ATCGGAGGAGGTTTGGCCAT 61.282 55.000 6.09 0.00 40.61 4.40
33 34 1.910580 GATCGGAGGAGGTTTGGCCA 61.911 60.000 0.00 0.00 40.61 5.36
34 35 1.153147 GATCGGAGGAGGTTTGGCC 60.153 63.158 0.00 0.00 37.58 5.36
35 36 1.120530 TAGATCGGAGGAGGTTTGGC 58.879 55.000 0.00 0.00 0.00 4.52
36 37 1.067212 CGTAGATCGGAGGAGGTTTGG 59.933 57.143 0.00 0.00 35.71 3.28
37 38 2.493713 CGTAGATCGGAGGAGGTTTG 57.506 55.000 0.00 0.00 35.71 2.93
48 49 2.350197 CCGTAGTTTAGGCCGTAGATCG 60.350 54.545 0.00 0.00 39.52 3.69
49 50 3.279853 CCGTAGTTTAGGCCGTAGATC 57.720 52.381 0.00 0.00 0.00 2.75
58 59 0.643820 CGCTTTCGCCGTAGTTTAGG 59.356 55.000 0.00 0.00 0.00 2.69
71 72 4.025401 CACCACACCCGCGCTTTC 62.025 66.667 5.56 0.00 0.00 2.62
79 80 3.661648 ATGGCCTCCACCACACCC 61.662 66.667 3.32 0.00 44.17 4.61
80 81 2.361610 CATGGCCTCCACCACACC 60.362 66.667 3.32 0.00 44.17 4.16
81 82 1.675641 GACATGGCCTCCACCACAC 60.676 63.158 3.32 0.00 44.17 3.82
82 83 1.714011 TTGACATGGCCTCCACCACA 61.714 55.000 3.32 0.00 44.17 4.17
83 84 0.962356 CTTGACATGGCCTCCACCAC 60.962 60.000 3.32 0.00 44.17 4.16
84 85 1.133181 TCTTGACATGGCCTCCACCA 61.133 55.000 3.32 0.00 45.82 4.17
85 86 0.678048 GTCTTGACATGGCCTCCACC 60.678 60.000 3.32 0.00 35.80 4.61
86 87 1.021390 CGTCTTGACATGGCCTCCAC 61.021 60.000 3.32 0.00 35.80 4.02
87 88 1.296392 CGTCTTGACATGGCCTCCA 59.704 57.895 3.32 0.00 38.19 3.86
88 89 1.021390 CACGTCTTGACATGGCCTCC 61.021 60.000 3.32 0.00 0.00 4.30
89 90 1.021390 CCACGTCTTGACATGGCCTC 61.021 60.000 3.32 0.00 0.00 4.70
90 91 1.003355 CCACGTCTTGACATGGCCT 60.003 57.895 3.32 0.00 0.00 5.19
91 92 0.889186 AACCACGTCTTGACATGGCC 60.889 55.000 14.72 0.00 35.49 5.36
92 93 0.951558 AAACCACGTCTTGACATGGC 59.048 50.000 14.72 0.00 35.49 4.40
93 94 1.334960 GCAAACCACGTCTTGACATGG 60.335 52.381 13.44 13.44 38.26 3.66
94 95 1.603802 AGCAAACCACGTCTTGACATG 59.396 47.619 5.88 0.00 0.00 3.21
95 96 1.967319 AGCAAACCACGTCTTGACAT 58.033 45.000 5.88 0.00 0.00 3.06
96 97 2.605837 TAGCAAACCACGTCTTGACA 57.394 45.000 5.88 0.00 0.00 3.58
97 98 2.159627 CCATAGCAAACCACGTCTTGAC 59.840 50.000 5.88 0.00 0.00 3.18
98 99 2.037902 TCCATAGCAAACCACGTCTTGA 59.962 45.455 5.88 0.00 0.00 3.02
99 100 2.159627 GTCCATAGCAAACCACGTCTTG 59.840 50.000 0.00 0.00 0.00 3.02
100 101 2.423577 GTCCATAGCAAACCACGTCTT 58.576 47.619 0.00 0.00 0.00 3.01
101 102 1.671850 CGTCCATAGCAAACCACGTCT 60.672 52.381 0.00 0.00 0.00 4.18
102 103 0.719465 CGTCCATAGCAAACCACGTC 59.281 55.000 0.00 0.00 0.00 4.34
103 104 0.672401 CCGTCCATAGCAAACCACGT 60.672 55.000 0.00 0.00 0.00 4.49
104 105 1.977594 GCCGTCCATAGCAAACCACG 61.978 60.000 0.00 0.00 0.00 4.94
105 106 1.654023 GGCCGTCCATAGCAAACCAC 61.654 60.000 0.00 0.00 0.00 4.16
106 107 1.377987 GGCCGTCCATAGCAAACCA 60.378 57.895 0.00 0.00 0.00 3.67
107 108 2.469516 CGGCCGTCCATAGCAAACC 61.470 63.158 19.50 0.00 0.00 3.27
108 109 2.469516 CCGGCCGTCCATAGCAAAC 61.470 63.158 26.12 0.00 0.00 2.93
109 110 2.124901 CCGGCCGTCCATAGCAAA 60.125 61.111 26.12 0.00 0.00 3.68
110 111 4.169696 CCCGGCCGTCCATAGCAA 62.170 66.667 26.12 0.00 0.00 3.91
140 141 3.751049 TATTCTCCGGCCGCCTCCT 62.751 63.158 22.85 6.29 0.00 3.69
141 142 3.227792 CTATTCTCCGGCCGCCTCC 62.228 68.421 22.85 0.00 0.00 4.30
142 143 2.340443 CTATTCTCCGGCCGCCTC 59.660 66.667 22.85 0.00 0.00 4.70
143 144 3.930012 GCTATTCTCCGGCCGCCT 61.930 66.667 22.85 3.88 0.00 5.52
184 185 3.787001 CTTCACCCCCTCTCCCGC 61.787 72.222 0.00 0.00 0.00 6.13
185 186 3.083997 CCTTCACCCCCTCTCCCG 61.084 72.222 0.00 0.00 0.00 5.14
186 187 3.412408 GCCTTCACCCCCTCTCCC 61.412 72.222 0.00 0.00 0.00 4.30
187 188 3.787001 CGCCTTCACCCCCTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
188 189 2.593956 AACGCCTTCACCCCCTCTC 61.594 63.158 0.00 0.00 0.00 3.20
189 190 2.529389 AACGCCTTCACCCCCTCT 60.529 61.111 0.00 0.00 0.00 3.69
190 191 2.359975 CAACGCCTTCACCCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
191 192 2.002018 TTTCAACGCCTTCACCCCCT 62.002 55.000 0.00 0.00 0.00 4.79
192 193 0.898326 ATTTCAACGCCTTCACCCCC 60.898 55.000 0.00 0.00 0.00 5.40
193 194 0.526211 GATTTCAACGCCTTCACCCC 59.474 55.000 0.00 0.00 0.00 4.95
194 195 0.168128 CGATTTCAACGCCTTCACCC 59.832 55.000 0.00 0.00 0.00 4.61
195 196 1.153353 TCGATTTCAACGCCTTCACC 58.847 50.000 0.00 0.00 0.00 4.02
196 197 2.961522 TTCGATTTCAACGCCTTCAC 57.038 45.000 0.00 0.00 0.00 3.18
197 198 2.161410 CCATTCGATTTCAACGCCTTCA 59.839 45.455 0.00 0.00 0.00 3.02
198 199 2.477863 CCCATTCGATTTCAACGCCTTC 60.478 50.000 0.00 0.00 0.00 3.46
199 200 1.472480 CCCATTCGATTTCAACGCCTT 59.528 47.619 0.00 0.00 0.00 4.35
200 201 1.094785 CCCATTCGATTTCAACGCCT 58.905 50.000 0.00 0.00 0.00 5.52
201 202 1.091537 TCCCATTCGATTTCAACGCC 58.908 50.000 0.00 0.00 0.00 5.68
202 203 1.737793 AGTCCCATTCGATTTCAACGC 59.262 47.619 0.00 0.00 0.00 4.84
203 204 4.181578 AGTAGTCCCATTCGATTTCAACG 58.818 43.478 0.00 0.00 0.00 4.10
204 205 5.411669 ACAAGTAGTCCCATTCGATTTCAAC 59.588 40.000 0.00 0.00 0.00 3.18
205 206 5.411361 CACAAGTAGTCCCATTCGATTTCAA 59.589 40.000 0.00 0.00 0.00 2.69
206 207 4.935205 CACAAGTAGTCCCATTCGATTTCA 59.065 41.667 0.00 0.00 0.00 2.69
207 208 4.935808 ACACAAGTAGTCCCATTCGATTTC 59.064 41.667 0.00 0.00 0.00 2.17
208 209 4.906618 ACACAAGTAGTCCCATTCGATTT 58.093 39.130 0.00 0.00 0.00 2.17
209 210 4.504858 GACACAAGTAGTCCCATTCGATT 58.495 43.478 0.00 0.00 0.00 3.34
210 211 4.124851 GACACAAGTAGTCCCATTCGAT 57.875 45.455 0.00 0.00 0.00 3.59
211 212 3.587797 GACACAAGTAGTCCCATTCGA 57.412 47.619 0.00 0.00 0.00 3.71
219 220 0.963962 TGTCGGGGACACAAGTAGTC 59.036 55.000 0.00 0.00 37.67 2.59
220 221 1.275291 CATGTCGGGGACACAAGTAGT 59.725 52.381 0.00 0.00 45.65 2.73
221 222 2.007049 GCATGTCGGGGACACAAGTAG 61.007 57.143 0.00 0.00 45.65 2.57
222 223 0.036765 GCATGTCGGGGACACAAGTA 60.037 55.000 0.00 0.00 45.65 2.24
223 224 1.302511 GCATGTCGGGGACACAAGT 60.303 57.895 0.00 0.00 45.65 3.16
224 225 2.390599 CGCATGTCGGGGACACAAG 61.391 63.158 0.00 0.00 45.65 3.16
225 226 2.358125 CGCATGTCGGGGACACAA 60.358 61.111 0.00 0.00 45.65 3.33
253 254 4.947147 TGCCACACGCCCTTGTCC 62.947 66.667 0.00 0.00 36.24 4.02
254 255 2.904866 TTGCCACACGCCCTTGTC 60.905 61.111 0.00 0.00 36.24 3.18
255 256 2.906897 CTTGCCACACGCCCTTGT 60.907 61.111 0.00 0.00 36.24 3.16
256 257 4.347453 GCTTGCCACACGCCCTTG 62.347 66.667 0.00 0.00 36.24 3.61
262 263 4.988598 AGACGGGCTTGCCACACG 62.989 66.667 14.04 10.21 0.00 4.49
263 264 3.357079 CAGACGGGCTTGCCACAC 61.357 66.667 14.04 3.85 0.00 3.82
269 270 0.530650 ATATCACGCAGACGGGCTTG 60.531 55.000 0.00 0.00 44.44 4.01
270 271 0.249489 GATATCACGCAGACGGGCTT 60.249 55.000 0.00 0.00 44.44 4.35
271 272 1.364171 GATATCACGCAGACGGGCT 59.636 57.895 0.00 0.00 44.44 5.19
272 273 1.664965 GGATATCACGCAGACGGGC 60.665 63.158 4.83 0.00 44.44 6.13
273 274 1.371758 CGGATATCACGCAGACGGG 60.372 63.158 4.83 0.00 46.87 5.28
274 275 0.248907 AACGGATATCACGCAGACGG 60.249 55.000 4.83 0.00 46.04 4.79
276 277 2.281762 GTGAAACGGATATCACGCAGAC 59.718 50.000 4.83 0.00 36.89 3.51
277 278 2.536365 GTGAAACGGATATCACGCAGA 58.464 47.619 4.83 0.00 36.89 4.26
278 279 1.593006 GGTGAAACGGATATCACGCAG 59.407 52.381 4.83 0.00 45.39 5.18
279 280 1.647346 GGTGAAACGGATATCACGCA 58.353 50.000 4.83 0.00 45.39 5.24
281 282 2.596904 AGGGTGAAACGGATATCACG 57.403 50.000 4.83 8.39 45.39 4.35
282 283 5.425630 AGTTTAGGGTGAAACGGATATCAC 58.574 41.667 4.83 0.00 42.89 3.06
283 284 5.667466 GAGTTTAGGGTGAAACGGATATCA 58.333 41.667 4.83 0.00 42.89 2.15
284 285 4.743644 CGAGTTTAGGGTGAAACGGATATC 59.256 45.833 0.00 0.00 42.89 1.63
285 286 4.442472 CCGAGTTTAGGGTGAAACGGATAT 60.442 45.833 0.00 0.00 42.89 1.63
286 287 3.119029 CCGAGTTTAGGGTGAAACGGATA 60.119 47.826 0.00 0.00 42.89 2.59
287 288 2.354403 CCGAGTTTAGGGTGAAACGGAT 60.354 50.000 0.00 0.00 42.89 4.18
288 289 1.001181 CCGAGTTTAGGGTGAAACGGA 59.999 52.381 0.00 0.00 42.89 4.69
289 290 1.435577 CCGAGTTTAGGGTGAAACGG 58.564 55.000 0.00 0.00 42.89 4.44
290 291 0.794473 GCCGAGTTTAGGGTGAAACG 59.206 55.000 0.00 0.00 42.89 3.60
291 292 0.794473 CGCCGAGTTTAGGGTGAAAC 59.206 55.000 0.00 0.00 39.22 2.78
292 293 0.952010 GCGCCGAGTTTAGGGTGAAA 60.952 55.000 0.00 0.00 35.85 2.69
293 294 1.375013 GCGCCGAGTTTAGGGTGAA 60.375 57.895 0.00 0.00 35.85 3.18
294 295 2.102109 TTGCGCCGAGTTTAGGGTGA 62.102 55.000 4.18 0.00 35.85 4.02
295 296 1.635663 CTTGCGCCGAGTTTAGGGTG 61.636 60.000 4.18 0.00 36.89 4.61
296 297 1.375523 CTTGCGCCGAGTTTAGGGT 60.376 57.895 4.18 0.00 0.00 4.34
297 298 0.953960 AACTTGCGCCGAGTTTAGGG 60.954 55.000 17.47 0.00 34.77 3.53
298 299 0.872388 AAACTTGCGCCGAGTTTAGG 59.128 50.000 27.36 3.58 43.68 2.69
299 300 1.529438 TCAAACTTGCGCCGAGTTTAG 59.471 47.619 27.74 22.60 43.68 1.85
300 301 1.529438 CTCAAACTTGCGCCGAGTTTA 59.471 47.619 27.74 18.69 43.68 2.01
301 302 0.307760 CTCAAACTTGCGCCGAGTTT 59.692 50.000 24.71 24.71 45.62 2.66
302 303 1.941812 CTCAAACTTGCGCCGAGTT 59.058 52.632 17.47 17.47 39.51 3.01
303 304 2.607892 GCTCAAACTTGCGCCGAGT 61.608 57.895 4.18 6.29 33.03 4.18
304 305 2.174349 GCTCAAACTTGCGCCGAG 59.826 61.111 4.18 5.52 33.03 4.63
308 309 4.404654 CCCGGCTCAAACTTGCGC 62.405 66.667 0.00 0.00 38.13 6.09
309 310 3.737172 CCCCGGCTCAAACTTGCG 61.737 66.667 0.00 0.00 0.00 4.85
310 311 1.678970 ATCCCCGGCTCAAACTTGC 60.679 57.895 0.00 0.00 0.00 4.01
311 312 1.315257 CCATCCCCGGCTCAAACTTG 61.315 60.000 0.00 0.00 0.00 3.16
312 313 1.000896 CCATCCCCGGCTCAAACTT 60.001 57.895 0.00 0.00 0.00 2.66
313 314 1.281925 ATCCATCCCCGGCTCAAACT 61.282 55.000 0.00 0.00 0.00 2.66
314 315 0.819666 GATCCATCCCCGGCTCAAAC 60.820 60.000 0.00 0.00 0.00 2.93
315 316 1.531748 GATCCATCCCCGGCTCAAA 59.468 57.895 0.00 0.00 0.00 2.69
316 317 2.807107 CGATCCATCCCCGGCTCAA 61.807 63.158 0.00 0.00 0.00 3.02
317 318 3.233980 CGATCCATCCCCGGCTCA 61.234 66.667 0.00 0.00 0.00 4.26
318 319 2.040009 TTTCGATCCATCCCCGGCTC 62.040 60.000 0.00 0.00 0.00 4.70
319 320 1.632018 TTTTCGATCCATCCCCGGCT 61.632 55.000 0.00 0.00 0.00 5.52
320 321 1.153046 TTTTCGATCCATCCCCGGC 60.153 57.895 0.00 0.00 0.00 6.13
321 322 2.702847 GTTTTCGATCCATCCCCGG 58.297 57.895 0.00 0.00 0.00 5.73
333 334 8.357966 CAAATGTTCAGATTATGTTCGTTTTCG 58.642 33.333 0.00 0.00 45.64 3.46
334 335 9.180678 ACAAATGTTCAGATTATGTTCGTTTTC 57.819 29.630 0.00 0.00 0.00 2.29
335 336 9.180678 GACAAATGTTCAGATTATGTTCGTTTT 57.819 29.630 0.00 0.00 0.00 2.43
336 337 7.807907 GGACAAATGTTCAGATTATGTTCGTTT 59.192 33.333 0.00 0.00 0.00 3.60
337 338 7.305474 GGACAAATGTTCAGATTATGTTCGTT 58.695 34.615 0.00 0.00 0.00 3.85
338 339 6.402118 CGGACAAATGTTCAGATTATGTTCGT 60.402 38.462 0.00 0.00 34.51 3.85
339 340 5.959527 CGGACAAATGTTCAGATTATGTTCG 59.040 40.000 0.00 0.00 32.74 3.95
340 341 6.842163 ACGGACAAATGTTCAGATTATGTTC 58.158 36.000 0.00 0.00 0.00 3.18
341 342 6.817765 ACGGACAAATGTTCAGATTATGTT 57.182 33.333 0.00 0.00 0.00 2.71
342 343 6.817765 AACGGACAAATGTTCAGATTATGT 57.182 33.333 0.00 0.00 0.00 2.29
343 344 6.527722 CCAAACGGACAAATGTTCAGATTATG 59.472 38.462 0.00 0.00 0.00 1.90
344 345 6.350110 CCCAAACGGACAAATGTTCAGATTAT 60.350 38.462 0.00 0.00 0.00 1.28
345 346 5.048364 CCCAAACGGACAAATGTTCAGATTA 60.048 40.000 0.00 0.00 0.00 1.75
346 347 4.261994 CCCAAACGGACAAATGTTCAGATT 60.262 41.667 0.00 0.00 0.00 2.40
347 348 3.255642 CCCAAACGGACAAATGTTCAGAT 59.744 43.478 0.00 0.00 0.00 2.90
348 349 2.621055 CCCAAACGGACAAATGTTCAGA 59.379 45.455 0.00 0.00 0.00 3.27
349 350 2.621055 TCCCAAACGGACAAATGTTCAG 59.379 45.455 0.00 0.00 34.86 3.02
350 351 2.656002 TCCCAAACGGACAAATGTTCA 58.344 42.857 0.00 0.00 34.86 3.18
360 361 4.973055 CGCACGGTCCCAAACGGA 62.973 66.667 0.00 0.00 38.83 4.69
362 363 3.273834 AACGCACGGTCCCAAACG 61.274 61.111 0.00 0.00 0.00 3.60
363 364 2.330041 CAACGCACGGTCCCAAAC 59.670 61.111 0.00 0.00 0.00 2.93
364 365 2.888464 TTCCAACGCACGGTCCCAAA 62.888 55.000 0.00 0.00 0.00 3.28
365 366 3.402095 TTCCAACGCACGGTCCCAA 62.402 57.895 0.00 0.00 0.00 4.12
366 367 3.818121 CTTCCAACGCACGGTCCCA 62.818 63.158 0.00 0.00 0.00 4.37
367 368 3.047877 CTTCCAACGCACGGTCCC 61.048 66.667 0.00 0.00 0.00 4.46
368 369 1.890510 AACTTCCAACGCACGGTCC 60.891 57.895 0.00 0.00 0.00 4.46
369 370 1.278637 CAACTTCCAACGCACGGTC 59.721 57.895 0.00 0.00 0.00 4.79
370 371 2.184167 CCAACTTCCAACGCACGGT 61.184 57.895 0.00 0.00 0.00 4.83
371 372 1.890041 TCCAACTTCCAACGCACGG 60.890 57.895 0.00 0.00 0.00 4.94
372 373 1.278637 GTCCAACTTCCAACGCACG 59.721 57.895 0.00 0.00 0.00 5.34
373 374 1.652563 GGTCCAACTTCCAACGCAC 59.347 57.895 0.00 0.00 0.00 5.34
374 375 1.527380 GGGTCCAACTTCCAACGCA 60.527 57.895 0.00 0.00 0.00 5.24
375 376 2.265904 GGGGTCCAACTTCCAACGC 61.266 63.158 0.00 0.00 0.00 4.84
376 377 0.466555 TTGGGGTCCAACTTCCAACG 60.467 55.000 0.00 0.00 38.75 4.10
377 378 1.411246 GTTTGGGGTCCAACTTCCAAC 59.589 52.381 0.00 0.00 43.82 3.77
378 379 1.783071 GTTTGGGGTCCAACTTCCAA 58.217 50.000 0.00 0.00 43.82 3.53
379 380 0.466555 CGTTTGGGGTCCAACTTCCA 60.467 55.000 0.00 0.00 43.82 3.53
380 381 0.179012 TCGTTTGGGGTCCAACTTCC 60.179 55.000 0.00 0.00 43.82 3.46
381 382 1.607148 CTTCGTTTGGGGTCCAACTTC 59.393 52.381 0.00 0.00 43.82 3.01
382 383 1.687563 CTTCGTTTGGGGTCCAACTT 58.312 50.000 0.00 0.00 43.82 2.66
383 384 0.179001 CCTTCGTTTGGGGTCCAACT 60.179 55.000 0.00 0.00 43.82 3.16
384 385 1.802337 GCCTTCGTTTGGGGTCCAAC 61.802 60.000 0.00 0.00 43.82 3.77
385 386 1.529713 GCCTTCGTTTGGGGTCCAA 60.530 57.895 0.00 0.00 42.29 3.53
386 387 2.114411 GCCTTCGTTTGGGGTCCA 59.886 61.111 0.00 0.00 0.00 4.02
387 388 2.114411 TGCCTTCGTTTGGGGTCC 59.886 61.111 0.00 0.00 0.00 4.46
388 389 2.265904 GGTGCCTTCGTTTGGGGTC 61.266 63.158 0.00 0.00 0.00 4.46
389 390 2.203437 GGTGCCTTCGTTTGGGGT 60.203 61.111 0.00 0.00 0.00 4.95
390 391 3.361977 CGGTGCCTTCGTTTGGGG 61.362 66.667 0.00 0.00 0.00 4.96
391 392 3.361977 CCGGTGCCTTCGTTTGGG 61.362 66.667 0.00 0.00 0.00 4.12
392 393 2.281208 TCCGGTGCCTTCGTTTGG 60.281 61.111 0.00 0.00 0.00 3.28
393 394 1.440938 TTGTCCGGTGCCTTCGTTTG 61.441 55.000 0.00 0.00 0.00 2.93
394 395 1.153127 TTGTCCGGTGCCTTCGTTT 60.153 52.632 0.00 0.00 0.00 3.60
395 396 1.597027 CTTGTCCGGTGCCTTCGTT 60.597 57.895 0.00 0.00 0.00 3.85
396 397 1.827399 ATCTTGTCCGGTGCCTTCGT 61.827 55.000 0.00 0.00 0.00 3.85
397 398 1.079127 ATCTTGTCCGGTGCCTTCG 60.079 57.895 0.00 0.00 0.00 3.79
398 399 1.026718 CCATCTTGTCCGGTGCCTTC 61.027 60.000 0.00 0.00 0.00 3.46
399 400 1.002134 CCATCTTGTCCGGTGCCTT 60.002 57.895 0.00 0.00 0.00 4.35
400 401 2.671070 CCATCTTGTCCGGTGCCT 59.329 61.111 0.00 0.00 0.00 4.75
401 402 2.438434 CCCATCTTGTCCGGTGCC 60.438 66.667 0.00 0.00 0.00 5.01
402 403 1.745489 GACCCATCTTGTCCGGTGC 60.745 63.158 0.00 0.00 0.00 5.01
403 404 1.447838 CGACCCATCTTGTCCGGTG 60.448 63.158 0.00 0.00 0.00 4.94
404 405 2.978824 CGACCCATCTTGTCCGGT 59.021 61.111 0.00 0.00 0.00 5.28
405 406 2.511600 GCGACCCATCTTGTCCGG 60.512 66.667 0.00 0.00 0.00 5.14
406 407 2.885644 CGCGACCCATCTTGTCCG 60.886 66.667 0.00 0.00 0.00 4.79
407 408 1.519455 CTCGCGACCCATCTTGTCC 60.519 63.158 3.71 0.00 0.00 4.02
408 409 1.519455 CCTCGCGACCCATCTTGTC 60.519 63.158 3.71 0.00 0.00 3.18
409 410 2.283529 ACCTCGCGACCCATCTTGT 61.284 57.895 3.71 0.00 0.00 3.16
410 411 1.811266 CACCTCGCGACCCATCTTG 60.811 63.158 3.71 0.00 0.00 3.02
411 412 2.579201 CACCTCGCGACCCATCTT 59.421 61.111 3.71 0.00 0.00 2.40
412 413 3.461773 CCACCTCGCGACCCATCT 61.462 66.667 3.71 0.00 0.00 2.90
413 414 3.432051 CTCCACCTCGCGACCCATC 62.432 68.421 3.71 0.00 0.00 3.51
414 415 3.461773 CTCCACCTCGCGACCCAT 61.462 66.667 3.71 0.00 0.00 4.00
415 416 3.957435 ATCTCCACCTCGCGACCCA 62.957 63.158 3.71 0.00 0.00 4.51
416 417 3.148279 ATCTCCACCTCGCGACCC 61.148 66.667 3.71 0.00 0.00 4.46
417 418 2.105128 CATCTCCACCTCGCGACC 59.895 66.667 3.71 0.00 0.00 4.79
418 419 2.105128 CCATCTCCACCTCGCGAC 59.895 66.667 3.71 0.00 0.00 5.19
419 420 3.838271 GCCATCTCCACCTCGCGA 61.838 66.667 9.26 9.26 0.00 5.87
420 421 4.899239 GGCCATCTCCACCTCGCG 62.899 72.222 0.00 0.00 0.00 5.87
421 422 4.554036 GGGCCATCTCCACCTCGC 62.554 72.222 4.39 0.00 0.00 5.03
422 423 3.866582 GGGGCCATCTCCACCTCG 61.867 72.222 4.39 0.00 0.00 4.63
423 424 3.866582 CGGGGCCATCTCCACCTC 61.867 72.222 4.39 0.00 0.00 3.85
426 427 3.645268 AAAGCGGGGCCATCTCCAC 62.645 63.158 4.39 0.00 0.00 4.02
427 428 2.439553 AAAAAGCGGGGCCATCTCCA 62.440 55.000 4.39 0.00 0.00 3.86
428 429 1.667154 GAAAAAGCGGGGCCATCTCC 61.667 60.000 4.39 0.00 0.00 3.71
429 430 0.681243 AGAAAAAGCGGGGCCATCTC 60.681 55.000 4.39 0.00 0.00 2.75
430 431 0.251787 AAGAAAAAGCGGGGCCATCT 60.252 50.000 4.39 0.00 0.00 2.90
431 432 0.173481 GAAGAAAAAGCGGGGCCATC 59.827 55.000 4.39 0.00 0.00 3.51
432 433 0.251787 AGAAGAAAAAGCGGGGCCAT 60.252 50.000 4.39 0.00 0.00 4.40
433 434 0.893727 GAGAAGAAAAAGCGGGGCCA 60.894 55.000 4.39 0.00 0.00 5.36
434 435 1.595993 GGAGAAGAAAAAGCGGGGCC 61.596 60.000 0.00 0.00 0.00 5.80
435 436 1.595993 GGGAGAAGAAAAAGCGGGGC 61.596 60.000 0.00 0.00 0.00 5.80
436 437 0.251165 TGGGAGAAGAAAAAGCGGGG 60.251 55.000 0.00 0.00 0.00 5.73
437 438 1.474077 CATGGGAGAAGAAAAAGCGGG 59.526 52.381 0.00 0.00 0.00 6.13
452 453 7.636579 TTCTTCATAGAATATCCATCCATGGG 58.363 38.462 13.02 0.00 40.60 4.00
483 486 1.757699 GTCTCTACCATGACCCCACTC 59.242 57.143 0.00 0.00 0.00 3.51
489 492 3.003897 GTCATCTCGTCTCTACCATGACC 59.996 52.174 0.00 0.00 35.92 4.02
492 495 3.004210 CCAGTCATCTCGTCTCTACCATG 59.996 52.174 0.00 0.00 0.00 3.66
493 496 3.218453 CCAGTCATCTCGTCTCTACCAT 58.782 50.000 0.00 0.00 0.00 3.55
494 497 2.026169 ACCAGTCATCTCGTCTCTACCA 60.026 50.000 0.00 0.00 0.00 3.25
495 498 2.614983 GACCAGTCATCTCGTCTCTACC 59.385 54.545 0.00 0.00 30.95 3.18
497 500 3.055021 AGTGACCAGTCATCTCGTCTCTA 60.055 47.826 3.41 0.00 42.18 2.43
508 511 5.124457 GGTAATAACGACTAGTGACCAGTCA 59.876 44.000 11.48 0.00 42.12 3.41
511 514 5.125097 ACAGGTAATAACGACTAGTGACCAG 59.875 44.000 0.00 0.00 0.00 4.00
513 521 5.338365 CACAGGTAATAACGACTAGTGACC 58.662 45.833 0.00 0.00 0.00 4.02
563 571 1.152376 TCAGGGGTTTTGCATGGCA 60.152 52.632 0.00 0.00 36.47 4.92
564 572 1.293179 GTCAGGGGTTTTGCATGGC 59.707 57.895 0.00 0.00 0.00 4.40
565 573 1.586028 CGTCAGGGGTTTTGCATGG 59.414 57.895 0.00 0.00 0.00 3.66
568 576 2.909965 GCCGTCAGGGGTTTTGCA 60.910 61.111 0.00 0.00 38.20 4.08
569 577 4.038080 CGCCGTCAGGGGTTTTGC 62.038 66.667 0.00 0.00 44.60 3.68
596 604 2.481568 GCTTGCTGATTTCTTTTTGGCC 59.518 45.455 0.00 0.00 0.00 5.36
684 701 2.203153 AAGCTTCGTGGCGTGGTT 60.203 55.556 0.00 0.00 37.29 3.67
685 702 2.665185 GAAGCTTCGTGGCGTGGT 60.665 61.111 11.40 0.00 37.29 4.16
687 704 2.357517 AGGAAGCTTCGTGGCGTG 60.358 61.111 20.28 0.00 37.29 5.34
703 720 2.048503 GTTGGTGGACGGACGGAG 60.049 66.667 0.00 0.00 0.00 4.63
727 744 4.320456 CGATCCATCCGGCCTGGG 62.320 72.222 19.27 8.30 38.76 4.45
756 774 4.648626 TGACCGACCGACCGACCT 62.649 66.667 0.00 0.00 0.00 3.85
757 775 4.112341 CTGACCGACCGACCGACC 62.112 72.222 0.00 0.00 0.00 4.79
758 776 4.773117 GCTGACCGACCGACCGAC 62.773 72.222 0.00 0.00 0.00 4.79
798 818 1.723288 GATTCGGGAGGAAGGGAGAT 58.277 55.000 0.00 0.00 38.24 2.75
799 819 0.398664 GGATTCGGGAGGAAGGGAGA 60.399 60.000 0.00 0.00 38.24 3.71
800 820 0.691078 TGGATTCGGGAGGAAGGGAG 60.691 60.000 0.00 0.00 38.24 4.30
812 837 0.670546 AGTTGTCGCTGGTGGATTCG 60.671 55.000 0.00 0.00 0.00 3.34
813 838 1.079503 GAGTTGTCGCTGGTGGATTC 58.920 55.000 0.00 0.00 0.00 2.52
878 939 2.351276 GGTTGGCTGGACGATGGT 59.649 61.111 0.00 0.00 0.00 3.55
885 946 2.904866 GCGTTGTGGTTGGCTGGA 60.905 61.111 0.00 0.00 0.00 3.86
887 948 1.588667 GTTGCGTTGTGGTTGGCTG 60.589 57.895 0.00 0.00 0.00 4.85
888 949 2.049185 TGTTGCGTTGTGGTTGGCT 61.049 52.632 0.00 0.00 0.00 4.75
889 950 1.876263 GTGTTGCGTTGTGGTTGGC 60.876 57.895 0.00 0.00 0.00 4.52
891 952 0.800300 GTGGTGTTGCGTTGTGGTTG 60.800 55.000 0.00 0.00 0.00 3.77
1039 1126 1.444553 GCTTCTCCTCGTCGTGGTG 60.445 63.158 12.76 10.64 0.00 4.17
1072 1168 4.452733 CGTCTTGCCGTCCCCCTC 62.453 72.222 0.00 0.00 0.00 4.30
1074 1170 3.782443 ATCGTCTTGCCGTCCCCC 61.782 66.667 0.00 0.00 0.00 5.40
1075 1171 2.511600 CATCGTCTTGCCGTCCCC 60.512 66.667 0.00 0.00 0.00 4.81
1076 1172 1.079405 TTCATCGTCTTGCCGTCCC 60.079 57.895 0.00 0.00 0.00 4.46
1077 1173 1.084370 CCTTCATCGTCTTGCCGTCC 61.084 60.000 0.00 0.00 0.00 4.79
1078 1174 0.108804 TCCTTCATCGTCTTGCCGTC 60.109 55.000 0.00 0.00 0.00 4.79
1079 1175 0.108615 CTCCTTCATCGTCTTGCCGT 60.109 55.000 0.00 0.00 0.00 5.68
1080 1176 1.424493 GCTCCTTCATCGTCTTGCCG 61.424 60.000 0.00 0.00 0.00 5.69
1081 1177 0.107945 AGCTCCTTCATCGTCTTGCC 60.108 55.000 0.00 0.00 0.00 4.52
1082 1178 1.285578 GAGCTCCTTCATCGTCTTGC 58.714 55.000 0.87 0.00 0.00 4.01
1083 1179 1.800655 CGGAGCTCCTTCATCGTCTTG 60.801 57.143 29.73 6.34 0.00 3.02
1084 1180 0.457851 CGGAGCTCCTTCATCGTCTT 59.542 55.000 29.73 0.00 0.00 3.01
1085 1181 1.388065 CCGGAGCTCCTTCATCGTCT 61.388 60.000 29.73 0.00 0.00 4.18
1086 1182 1.066587 CCGGAGCTCCTTCATCGTC 59.933 63.158 29.73 0.81 0.00 4.20
1087 1183 2.427245 CCCGGAGCTCCTTCATCGT 61.427 63.158 29.73 0.00 0.00 3.73
1088 1184 2.419198 CCCGGAGCTCCTTCATCG 59.581 66.667 29.73 15.28 0.00 3.84
1089 1185 2.825264 CCCCGGAGCTCCTTCATC 59.175 66.667 29.73 3.13 0.00 2.92
1193 1289 3.397439 GGAGGAGCAGCAGGAGCA 61.397 66.667 0.00 0.00 45.49 4.26
1194 1290 4.173924 GGGAGGAGCAGCAGGAGC 62.174 72.222 0.00 0.00 42.56 4.70
1200 1296 2.045536 CTGTTGGGGAGGAGCAGC 60.046 66.667 0.00 0.00 0.00 5.25
1848 1965 3.622060 CTGGTTTCCCGGCATCCGT 62.622 63.158 0.00 0.00 46.80 4.69
1980 2121 1.578583 CCTCCGTGACGTGTTTCTTT 58.421 50.000 3.64 0.00 0.00 2.52
2654 2797 6.433093 ACTCGCCTCCTAAACAACAAAAATAT 59.567 34.615 0.00 0.00 0.00 1.28
2670 2813 0.460987 CACCAATCTCACTCGCCTCC 60.461 60.000 0.00 0.00 0.00 4.30
2732 2879 0.804933 GTACATCGTCTGTTCGGCCC 60.805 60.000 0.00 0.00 39.39 5.80
2733 2880 0.108992 TGTACATCGTCTGTTCGGCC 60.109 55.000 0.00 0.00 39.39 6.13
2737 2884 9.256477 TCCATTTATTATGTACATCGTCTGTTC 57.744 33.333 12.68 0.00 39.39 3.18
2814 2962 2.565391 TCGAGTAGCTTGTGGAATTCCA 59.435 45.455 23.63 23.63 45.30 3.53
2815 2963 3.247006 TCGAGTAGCTTGTGGAATTCC 57.753 47.619 18.17 18.17 0.00 3.01
2816 2964 4.631813 ACATTCGAGTAGCTTGTGGAATTC 59.368 41.667 0.00 0.00 0.00 2.17
2819 2967 3.585862 GACATTCGAGTAGCTTGTGGAA 58.414 45.455 0.00 0.00 0.00 3.53
2820 2968 2.094182 GGACATTCGAGTAGCTTGTGGA 60.094 50.000 0.00 0.00 0.00 4.02
2828 2976 5.869344 TCATGAAGTTTGGACATTCGAGTAG 59.131 40.000 0.00 0.00 0.00 2.57
2842 3632 9.715121 ATACTCATGCAAAATTTCATGAAGTTT 57.285 25.926 19.82 19.82 45.64 2.66
2843 3633 9.715121 AATACTCATGCAAAATTTCATGAAGTT 57.285 25.926 18.14 10.17 45.64 2.66
2869 3659 0.740868 GCAAGATGCTCAGGTGCGTA 60.741 55.000 0.00 0.00 40.96 4.42
2871 3661 1.579964 TTGCAAGATGCTCAGGTGCG 61.580 55.000 0.00 0.00 45.31 5.34
2876 3666 3.570926 ATTGTGTTGCAAGATGCTCAG 57.429 42.857 0.00 0.00 45.31 3.35
2932 6051 2.495669 CCCGGGCATGAACTGTAAAATT 59.504 45.455 8.08 0.00 0.00 1.82
2940 6059 0.394352 GATGAACCCGGGCATGAACT 60.394 55.000 24.08 0.00 0.00 3.01
2951 6070 1.144936 CTCGGGCTCAGATGAACCC 59.855 63.158 10.74 10.74 44.97 4.11
2954 6073 1.219124 GTGCTCGGGCTCAGATGAA 59.781 57.895 9.62 0.00 39.59 2.57
2963 6082 4.700365 GCGTTTTGGTGCTCGGGC 62.700 66.667 0.00 0.00 39.26 6.13
2966 6085 1.225376 TAGTGGCGTTTTGGTGCTCG 61.225 55.000 0.00 0.00 0.00 5.03
2968 6087 1.165270 GATAGTGGCGTTTTGGTGCT 58.835 50.000 0.00 0.00 0.00 4.40
2972 6091 4.442706 AGTATCTGATAGTGGCGTTTTGG 58.557 43.478 4.24 0.00 0.00 3.28
2973 6092 6.422776 AAAGTATCTGATAGTGGCGTTTTG 57.577 37.500 5.80 0.00 0.00 2.44
2991 6110 5.625197 GCACCCACTCTATAAACGGAAAGTA 60.625 44.000 0.00 0.00 0.00 2.24
2993 6112 3.621715 GCACCCACTCTATAAACGGAAAG 59.378 47.826 0.00 0.00 0.00 2.62
2997 6165 1.208535 TGGCACCCACTCTATAAACGG 59.791 52.381 0.00 0.00 0.00 4.44
2998 6166 2.684001 TGGCACCCACTCTATAAACG 57.316 50.000 0.00 0.00 0.00 3.60
3003 6171 1.806496 TGCTATGGCACCCACTCTAT 58.194 50.000 0.00 0.00 44.28 1.98
3065 6233 0.250166 ACCAGCACCACCGTAAAGTC 60.250 55.000 0.00 0.00 0.00 3.01
3081 6249 0.106967 TGCAGCACTAACCAACACCA 60.107 50.000 0.00 0.00 0.00 4.17
3096 6264 0.108662 TGTCGGCTGACTGTATGCAG 60.109 55.000 25.54 9.50 45.70 4.41
3097 6265 0.320050 TTGTCGGCTGACTGTATGCA 59.680 50.000 25.54 1.25 45.70 3.96
3098 6266 0.721718 GTTGTCGGCTGACTGTATGC 59.278 55.000 25.54 6.60 45.70 3.14
3099 6267 2.078849 TGTTGTCGGCTGACTGTATG 57.921 50.000 25.54 0.00 45.70 2.39
3100 6268 2.233676 TCATGTTGTCGGCTGACTGTAT 59.766 45.455 25.54 13.79 45.70 2.29
3101 6269 1.616374 TCATGTTGTCGGCTGACTGTA 59.384 47.619 25.54 12.18 45.70 2.74
3105 6273 3.300009 CTTTTTCATGTTGTCGGCTGAC 58.700 45.455 19.20 19.20 45.71 3.51
3174 6342 8.850156 GCCTCATATTCATGTGTTTTACCTATT 58.150 33.333 0.00 0.00 33.57 1.73
3180 6348 6.435591 TGTTGGCCTCATATTCATGTGTTTTA 59.564 34.615 3.32 0.00 33.57 1.52
3243 6412 5.533154 AGACGGAGAGAGTATGTTCCTATTG 59.467 44.000 0.00 0.00 0.00 1.90
3249 6418 2.359531 CCCAGACGGAGAGAGTATGTTC 59.640 54.545 0.00 0.00 0.00 3.18
3369 6544 9.703892 CACAGAAATTAAACCATTGGAAACATA 57.296 29.630 10.37 0.00 42.32 2.29
3371 6546 7.708752 GTCACAGAAATTAAACCATTGGAAACA 59.291 33.333 10.37 0.00 39.83 2.83
3442 6617 4.355549 TCTTAGACCCCCACTTATTTCGA 58.644 43.478 0.00 0.00 0.00 3.71
3444 6619 5.651139 GGTTTCTTAGACCCCCACTTATTTC 59.349 44.000 0.00 0.00 0.00 2.17
3463 6638 5.727434 TCCTACTAACTTCATTCGGGTTTC 58.273 41.667 0.00 0.00 0.00 2.78
3479 6656 7.517614 TGCAAAATTGACATGTTTCCTACTA 57.482 32.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.