AutoCloner

Multiple sequence alignment - TraesCS1B01G040900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G040900	chr1B	100.000	3250	0	0	1	3250	20291981	20295230	0.000000e+00	6002.0
1	TraesCS1B01G040900	chr1B	94.409	1860	76	15	622	2474	20061452	20059614	0.000000e+00	2833.0
2	TraesCS1B01G040900	chr1B	89.417	926	84	8	907	1828	20127543	20126628	0.000000e+00	1155.0
3	TraesCS1B01G040900	chr1B	92.294	558	24	10	2465	3016	20059309	20058765	0.000000e+00	774.0
4	TraesCS1B01G040900	chr1B	90.524	401	32	5	1881	2276	20102635	20102236	2.870000e-145	525.0
5	TraesCS1B01G040900	chr1B	84.153	183	17	2	9	179	20062489	20062307	2.010000e-37	167.0
6	TraesCS1B01G040900	chr1B	86.111	144	8	3	48	179	20554027	20554170	9.400000e-31	145.0
7	TraesCS1B01G040900	chr1B	91.429	105	5	1	48	148	19621124	19621020	1.220000e-29	141.0
8	TraesCS1B01G040900	chr1B	91.429	105	5	1	48	148	19840677	19840573	1.220000e-29	141.0
9	TraesCS1B01G040900	chr1B	91.346	104	5	1	49	148	19952552	19952449	4.370000e-29	139.0
10	TraesCS1B01G040900	chr1B	85.714	105	5	4	48	148	19721077	19720979	5.740000e-18	102.0
11	TraesCS1B01G040900	chr1D	92.070	2875	173	23	371	3235	13853847	13851018	0.000000e+00	3995.0
12	TraesCS1B01G040900	chr1D	89.956	1374	102	16	907	2273	14188339	14186995	0.000000e+00	1740.0
13	TraesCS1B01G040900	chr1D	89.817	1365	88	22	1876	3235	13970056	13968738	0.000000e+00	1703.0
14	TraesCS1B01G040900	chr1D	89.158	1365	83	21	1876	3235	14001355	14000051	0.000000e+00	1640.0
15	TraesCS1B01G040900	chr1D	89.003	682	56	8	371	1047	14002019	14001352	0.000000e+00	826.0
16	TraesCS1B01G040900	chr1D	88.710	682	58	8	371	1047	13970720	13970053	0.000000e+00	815.0
17	TraesCS1B01G040900	chr1D	87.624	202	15	2	172	373	13970957	13970766	3.260000e-55	226.0
18	TraesCS1B01G040900	chr1D	87.129	202	16	2	172	373	14002256	14002065	1.520000e-53	220.0
19	TraesCS1B01G040900	chr1D	92.405	79	6	0	172	250	13854062	13853984	2.650000e-21	113.0
20	TraesCS1B01G040900	chr1D	100.000	32	0	0	2314	2345	14186963	14186932	3.500000e-05	60.2
21	TraesCS1B01G040900	chr1A	90.725	2857	211	31	398	3234	14801094	14798272	0.000000e+00	3759.0
22	TraesCS1B01G040900	chr1A	86.494	1777	172	41	596	2345	14858676	14856941	0.000000e+00	1890.0
23	TraesCS1B01G040900	chr1A	85.000	120	9	2	65	176	14852330	14852212	2.650000e-21	113.0
24	TraesCS1B01G040900	chr1A	85.047	107	7	2	261	367	14795224	14795127	2.060000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G040900	chr1B	20291981	20295230	3249	False	6002.000000	6002	100.000000	1	3250	1	chr1B.!!$F1	3249
1	TraesCS1B01G040900	chr1B	20058765	20062489	3724	True	1258.000000	2833	90.285333	9	3016	3	chr1B.!!$R7	3007
2	TraesCS1B01G040900	chr1B	20126628	20127543	915	True	1155.000000	1155	89.417000	907	1828	1	chr1B.!!$R6	921
3	TraesCS1B01G040900	chr1D	13851018	13854062	3044	True	2054.000000	3995	92.237500	172	3235	2	chr1D.!!$R1	3063
4	TraesCS1B01G040900	chr1D	13968738	13970957	2219	True	914.666667	1703	88.717000	172	3235	3	chr1D.!!$R2	3063
5	TraesCS1B01G040900	chr1D	14186932	14188339	1407	True	900.100000	1740	94.978000	907	2345	2	chr1D.!!$R4	1438
6	TraesCS1B01G040900	chr1D	14000051	14002256	2205	True	895.333333	1640	88.430000	172	3235	3	chr1D.!!$R3	3063
7	TraesCS1B01G040900	chr1A	14795127	14801094	5967	True	1929.500000	3759	87.886000	261	3234	2	chr1A.!!$R3	2973
8	TraesCS1B01G040900	chr1A	14856941	14858676	1735	True	1890.000000	1890	86.494000	596	2345	1	chr1A.!!$R2	1749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
46	47	0.107654	GGTGCAGGTTGCTAGGGTAG	60.108	60.0	2.48	0.0	45.31	3.18	F
1155	1786	0.105593	CTGATATCCTGCACCGCTGT	59.894	55.0	0.00	0.0	0.00	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1940	2601	0.037139	GCACATGCTGCCAAATGGAA	60.037	50.0	2.98	0.00	40.42	3.53	R
2702	3734	0.096108	GCTAACGAAGAAGCAGCTGC	59.904	55.0	31.53	31.53	39.20	5.25	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	3.476031	CTATGGAATGCCGGCGGGT	62.476	63.158	29.48	9.31	36.79	5.28
28	29	2.978010	GAATGCCGGCGGGTATGG	60.978	66.667	29.48	0.20	38.79	2.74
46	47	0.107654	GGTGCAGGTTGCTAGGGTAG	60.108	60.000	2.48	0.00	45.31	3.18
120	125	3.611766	TCTTCTGGCTTAGGCTAACAC	57.388	47.619	7.43	0.00	38.73	3.32
125	130	1.004277	TGGCTTAGGCTAACACCAAGG	59.996	52.381	17.73	3.14	38.73	3.61
130	135	2.467566	AGGCTAACACCAAGGTAACG	57.532	50.000	0.00	0.00	46.39	3.18
132	137	2.570302	AGGCTAACACCAAGGTAACGAT	59.430	45.455	0.00	0.00	46.39	3.73
133	138	3.770933	AGGCTAACACCAAGGTAACGATA	59.229	43.478	0.00	0.00	46.39	2.92
137	142	5.007332	GCTAACACCAAGGTAACGATAATGG	59.993	44.000	0.00	0.00	46.39	3.16
146	151	7.817962	CCAAGGTAACGATAATGGTCTATTAGG	59.182	40.741	0.00	0.00	46.39	2.69
151	164	6.971726	ACGATAATGGTCTATTAGGTGTCA	57.028	37.500	0.00	0.00	34.86	3.58
159	172	4.262249	GGTCTATTAGGTGTCATCTCTGGC	60.262	50.000	0.00	0.00	0.00	4.85
206	219	2.343758	GCTGAACGGCTCACCTCA	59.656	61.111	0.00	0.00	0.00	3.86
246	811	3.149196	CAACTAGTGTTGCCAATCACCT	58.851	45.455	0.00	0.03	45.57	4.00
274	839	2.050934	GGTACGAGAACCGGCCTCT	61.051	63.158	18.64	13.43	43.93	3.69
319	884	2.669670	CGACAACACAACAAAGGCAACA	60.670	45.455	0.00	0.00	41.41	3.33
320	885	3.321497	GACAACACAACAAAGGCAACAA	58.679	40.909	0.00	0.00	41.41	2.83
321	886	3.733337	ACAACACAACAAAGGCAACAAA	58.267	36.364	0.00	0.00	41.41	2.83
322	887	3.745458	ACAACACAACAAAGGCAACAAAG	59.255	39.130	0.00	0.00	41.41	2.77
323	888	2.971307	ACACAACAAAGGCAACAAAGG	58.029	42.857	0.00	0.00	41.41	3.11
324	889	2.301583	ACACAACAAAGGCAACAAAGGT	59.698	40.909	0.00	0.00	41.41	3.50
325	890	3.511934	ACACAACAAAGGCAACAAAGGTA	59.488	39.130	0.00	0.00	41.41	3.08
339	904	3.545724	AGGTACTTAGCAAACCGCC	57.454	52.632	0.00	0.00	36.63	6.13
352	917	4.020617	CCGCCTGCCAGGAACTCA	62.021	66.667	16.85	0.00	37.67	3.41
367	932	0.901124	ACTCAGCGAAAGATCTGCCT	59.099	50.000	0.00	0.00	0.00	4.75
368	933	1.288350	CTCAGCGAAAGATCTGCCTG	58.712	55.000	0.00	1.01	0.00	4.85
369	934	0.897621	TCAGCGAAAGATCTGCCTGA	59.102	50.000	0.00	3.51	0.00	3.86
458	1070	6.711194	AGCATCTGATTTCTGTATTCCATGAG	59.289	38.462	0.00	0.00	0.00	2.90
555	1167	7.502226	TGGTCAGTAGAAAATATTAAGGCATGG	59.498	37.037	0.00	0.00	0.00	3.66
593	1205	9.612620	CTTATGTTTGTGATCTTGAACCTAAAC	57.387	33.333	0.00	0.00	0.00	2.01
609	1224	6.457851	ACCTAAACATTTTTCTACGACGAC	57.542	37.500	0.00	0.00	0.00	4.34
635	1250	5.731599	ATCTTTTAGAGATTGCTTCTGCG	57.268	39.130	0.00	0.00	42.55	5.18
646	1261	5.645497	AGATTGCTTCTGCGTAAGATTTTCT	59.355	36.000	2.24	0.00	43.34	2.52
682	1299	2.356382	CGCTTTATACAAATTCCCGCCA	59.644	45.455	0.00	0.00	0.00	5.69
686	1303	5.681179	GCTTTATACAAATTCCCGCCACAAT	60.681	40.000	0.00	0.00	0.00	2.71
710	1328	3.782656	TGGGGTGTCCTCTAGTTTTTC	57.217	47.619	0.00	0.00	36.20	2.29
721	1339	7.676893	TGTCCTCTAGTTTTTCTAATGGTAGGA	59.323	37.037	0.00	0.00	0.00	2.94
772	1390	0.871722	TACATGTGCGCAGGTTGTTC	59.128	50.000	23.67	5.18	40.38	3.18
776	1394	0.814457	TGTGCGCAGGTTGTTCTTTT	59.186	45.000	12.22	0.00	0.00	2.27
788	1415	4.142271	GGTTGTTCTTTTGTGTGTCATGGA	60.142	41.667	0.00	0.00	0.00	3.41
797	1424	0.464193	TGTGTCATGGATCATGGCCG	60.464	55.000	9.58	0.00	44.78	6.13
830	1457	3.715273	CAGCATGAGCAGCTACCG	58.285	61.111	0.00	0.00	45.49	4.02
832	1459	0.742281	CAGCATGAGCAGCTACCGTT	60.742	55.000	0.00	0.00	45.49	4.44
836	1463	2.803133	GCATGAGCAGCTACCGTTATCA	60.803	50.000	0.00	0.00	41.58	2.15
876	1503	3.132925	TGTTAATTATTAGGTCGCGCCC	58.867	45.455	14.64	7.06	38.26	6.13
880	1507	1.339644	TTATTAGGTCGCGCCCCCTT	61.340	55.000	16.79	3.97	38.26	3.95
894	1521	2.286121	CCTTCCCCTACCCAGCCA	60.286	66.667	0.00	0.00	0.00	4.75
895	1522	1.697754	CCTTCCCCTACCCAGCCAT	60.698	63.158	0.00	0.00	0.00	4.40
1010	1641	7.346436	AGCAAAATTAAGGGAAATGGATCAGAT	59.654	33.333	0.00	0.00	0.00	2.90
1011	1642	7.989170	GCAAAATTAAGGGAAATGGATCAGATT	59.011	33.333	0.00	0.00	0.00	2.40
1089	1720	1.136695	CTCTTTTGCCACACCTTTGCA	59.863	47.619	0.00	0.00	0.00	4.08
1130	1761	0.463654	AACAGTGCCGTGAAGCTTGA	60.464	50.000	2.10	0.00	0.00	3.02
1141	1772	3.306973	CGTGAAGCTTGAAATCGCTGATA	59.693	43.478	2.10	0.00	36.45	2.15
1146	1777	4.063689	AGCTTGAAATCGCTGATATCCTG	58.936	43.478	0.00	0.00	34.69	3.86
1155	1786	0.105593	CTGATATCCTGCACCGCTGT	59.894	55.000	0.00	0.00	0.00	4.40
1370	2025	1.761174	GTCTCCTGGTGGAAGGCAA	59.239	57.895	0.00	0.00	42.66	4.52
1502	2157	2.016171	CATTCACGATGGCGCATGA	58.984	52.632	10.83	1.19	42.48	3.07
1818	2473	0.392193	CTCCCGCTGATGCTGTTCTT	60.392	55.000	0.00	0.00	36.97	2.52
1904	2560	6.742756	TCCTACTCTCCCCGATTCATAATAT	58.257	40.000	0.00	0.00	0.00	1.28
2099	2784	1.000385	CACGAAATGCTTGAAGCCCAA	60.000	47.619	15.43	0.00	41.51	4.12
2396	3096	1.820519	GAATGGTTGGCATGCTTCTCA	59.179	47.619	18.92	11.70	0.00	3.27
2408	3108	4.302455	CATGCTTCTCAATACCCTCTACG	58.698	47.826	0.00	0.00	0.00	3.51
2409	3109	2.100916	TGCTTCTCAATACCCTCTACGC	59.899	50.000	0.00	0.00	0.00	4.42
2485	3514	2.748388	ACTCTAGGCGTCCCATTTACT	58.252	47.619	0.00	0.00	0.00	2.24
2653	3682	1.396648	CAATTAATCGGTGTCGCAGCA	59.603	47.619	9.15	0.00	36.13	4.41
2702	3734	6.149308	TGTGGATTACTCATGCTTGTTGTTAG	59.851	38.462	0.00	0.00	0.00	2.34
2837	3871	2.354203	CGAGAAAAGGGAGAGGTTCAGG	60.354	54.545	0.00	0.00	0.00	3.86
2914	3948	5.653255	ATAGTATCAATTTGCCCCTGAGT	57.347	39.130	0.00	0.00	0.00	3.41
2988	4024	7.303182	TGAATGTATATTGTAGAGGAGGTGG	57.697	40.000	0.00	0.00	0.00	4.61
2989	4025	6.270000	TGAATGTATATTGTAGAGGAGGTGGG	59.730	42.308	0.00	0.00	0.00	4.61
2990	4026	5.412617	TGTATATTGTAGAGGAGGTGGGA	57.587	43.478	0.00	0.00	0.00	4.37
2991	4027	5.784023	TGTATATTGTAGAGGAGGTGGGAA	58.216	41.667	0.00	0.00	0.00	3.97
3020	4056	1.679898	CGTTCCCTTCTCCCAAGCT	59.320	57.895	0.00	0.00	0.00	3.74
3021	4057	0.902531	CGTTCCCTTCTCCCAAGCTA	59.097	55.000	0.00	0.00	0.00	3.32
3130	4168	7.706179	GGTTTTCTTGACAAATCTGTTTGATCA	59.294	33.333	7.79	0.00	46.03	2.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.280746	CGGCATTCCATAGCGCAAG	59.719	57.895	11.47	0.00	43.44	4.01
1	2	2.186160	CCGGCATTCCATAGCGCAA	61.186	57.895	11.47	0.00	0.00	4.85
2	3	2.591429	CCGGCATTCCATAGCGCA	60.591	61.111	11.47	0.00	0.00	6.09
3	4	4.030452	GCCGGCATTCCATAGCGC	62.030	66.667	24.80	0.00	0.00	5.92
4	5	3.716006	CGCCGGCATTCCATAGCG	61.716	66.667	28.98	3.82	38.87	4.26
5	6	3.357079	CCGCCGGCATTCCATAGC	61.357	66.667	28.98	0.00	0.00	2.97
6	7	2.107041	TACCCGCCGGCATTCCATAG	62.107	60.000	28.98	7.02	0.00	2.23
7	8	1.485294	ATACCCGCCGGCATTCCATA	61.485	55.000	28.98	9.70	0.00	2.74
46	47	4.498241	CCAATCTTGCTAAGGGAAAAAGC	58.502	43.478	0.00	0.00	36.77	3.51
49	50	4.126520	ACCCAATCTTGCTAAGGGAAAA	57.873	40.909	2.29	0.00	42.25	2.29
51	52	3.202151	CCTACCCAATCTTGCTAAGGGAA	59.798	47.826	2.29	0.00	42.25	3.97
105	110	1.004277	CCTTGGTGTTAGCCTAAGCCA	59.996	52.381	4.18	4.18	41.25	4.75
120	125	7.817962	CCTAATAGACCATTATCGTTACCTTGG	59.182	40.741	0.00	0.00	0.00	3.61
125	130	8.355169	TGACACCTAATAGACCATTATCGTTAC	58.645	37.037	0.00	0.00	0.00	2.50
130	135	9.030452	AGAGATGACACCTAATAGACCATTATC	57.970	37.037	0.00	0.00	0.00	1.75
132	137	7.233553	CCAGAGATGACACCTAATAGACCATTA	59.766	40.741	0.00	0.00	0.00	1.90
133	138	6.042552	CCAGAGATGACACCTAATAGACCATT	59.957	42.308	0.00	0.00	0.00	3.16
137	142	4.262249	GGCCAGAGATGACACCTAATAGAC	60.262	50.000	0.00	0.00	0.00	2.59
146	151	1.078143	GGTGGGCCAGAGATGACAC	60.078	63.158	6.40	0.00	34.09	3.67
159	172	5.227569	TGAGCATAACATAGTATGGTGGG	57.772	43.478	11.11	3.98	41.17	4.61
202	215	5.008217	TGTTTATTCGGAGTGTGTTTTGAGG	59.992	40.000	0.00	0.00	0.00	3.86
206	219	6.445357	AGTTGTTTATTCGGAGTGTGTTTT	57.555	33.333	0.00	0.00	0.00	2.43
256	821	2.002509	GAGAGGCCGGTTCTCGTACC	62.003	65.000	18.26	2.74	36.45	3.34
261	826	0.462759	CATTGGAGAGGCCGGTTCTC	60.463	60.000	22.50	22.50	40.66	2.87
274	839	1.559682	GCCAGTTAGGAGGTCATTGGA	59.440	52.381	0.00	0.00	41.22	3.53
319	884	2.156917	GGCGGTTTGCTAAGTACCTTT	58.843	47.619	0.00	0.00	45.43	3.11
320	885	1.350019	AGGCGGTTTGCTAAGTACCTT	59.650	47.619	0.00	0.00	45.43	3.50
321	886	0.981943	AGGCGGTTTGCTAAGTACCT	59.018	50.000	0.00	0.00	45.43	3.08
322	887	1.084289	CAGGCGGTTTGCTAAGTACC	58.916	55.000	0.00	0.00	45.43	3.34
323	888	0.446616	GCAGGCGGTTTGCTAAGTAC	59.553	55.000	0.00	0.00	45.43	2.73
324	889	0.675522	GGCAGGCGGTTTGCTAAGTA	60.676	55.000	5.98	0.00	45.43	2.24
325	890	1.971695	GGCAGGCGGTTTGCTAAGT	60.972	57.895	5.98	0.00	45.43	2.24
339	904	0.603707	TTTCGCTGAGTTCCTGGCAG	60.604	55.000	7.75	7.75	0.00	4.85
352	917	0.901124	AGTCAGGCAGATCTTTCGCT	59.099	50.000	0.00	0.00	0.00	4.93
367	932	5.399013	CAGACGTAATATGTGTGTGAGTCA	58.601	41.667	2.00	0.00	0.00	3.41
368	933	4.265556	GCAGACGTAATATGTGTGTGAGTC	59.734	45.833	10.77	0.00	31.71	3.36
369	934	4.174009	GCAGACGTAATATGTGTGTGAGT	58.826	43.478	10.77	0.00	31.71	3.41
509	1121	8.942338	TGACCACACAGAACATAATATACTTC	57.058	34.615	0.00	0.00	0.00	3.01
555	1167	7.214467	TCACAAACATAAGGACCTCAAAATC	57.786	36.000	0.00	0.00	0.00	2.17
593	1205	9.755064	AAAAGATAATGTCGTCGTAGAAAAATG	57.245	29.630	0.00	0.00	39.69	2.32
609	1224	7.797587	CGCAGAAGCAATCTCTAAAAGATAATG	59.202	37.037	0.00	0.00	41.19	1.90
635	1250	9.922305	GACTATAATGCACACAGAAAATCTTAC	57.078	33.333	0.00	0.00	0.00	2.34
646	1261	6.981559	TGTATAAAGCGACTATAATGCACACA	59.018	34.615	0.00	0.00	0.00	3.72
682	1299	0.323725	GAGGACACCCCATGCATTGT	60.324	55.000	0.00	0.00	37.41	2.71
686	1303	0.252696	ACTAGAGGACACCCCATGCA	60.253	55.000	0.00	0.00	37.41	3.96
710	1328	0.597637	CTGCGGCGTCCTACCATTAG	60.598	60.000	9.37	0.00	0.00	1.73
721	1339	3.121030	GTCAGAATGCTGCGGCGT	61.121	61.111	13.96	10.37	42.01	5.68
772	1390	4.740268	CCATGATCCATGACACACAAAAG	58.260	43.478	8.38	0.00	43.81	2.27
776	1394	1.682702	GGCCATGATCCATGACACACA	60.683	52.381	0.00	0.00	43.81	3.72
788	1415	0.882042	GATCGACAAGCGGCCATGAT	60.882	55.000	2.24	1.12	41.33	2.45
797	1424	1.417592	CTGCACACGATCGACAAGC	59.582	57.895	24.34	18.91	0.00	4.01
876	1503	3.097162	GGCTGGGTAGGGGAAGGG	61.097	72.222	0.00	0.00	0.00	3.95
880	1507	2.039831	GGATGGCTGGGTAGGGGA	60.040	66.667	0.00	0.00	0.00	4.81
886	1513	1.686800	GGCAAATGGATGGCTGGGT	60.687	57.895	0.00	0.00	42.22	4.51
894	1521	4.670765	GATCATAAGAGGGGCAAATGGAT	58.329	43.478	0.00	0.00	0.00	3.41
895	1522	3.496692	CGATCATAAGAGGGGCAAATGGA	60.497	47.826	0.00	0.00	0.00	3.41
1089	1720	2.092753	CAGTGCCATGGACTTGAGGTAT	60.093	50.000	18.40	0.00	0.00	2.73
1130	1761	2.498167	GGTGCAGGATATCAGCGATTT	58.502	47.619	4.83	0.00	0.00	2.17
1206	1837	1.077429	CAGGTAGGGGCCTTTGCTC	60.077	63.158	0.84	0.00	36.58	4.26
1370	2025	0.518636	GCACAACGACATGCATGAGT	59.481	50.000	32.75	25.85	41.65	3.41
1502	2157	2.186903	CGCCATACAAGCTCCCGT	59.813	61.111	0.00	0.00	0.00	5.28
1904	2560	6.380095	ACCTTAATTTAAAACTGCGACACA	57.620	33.333	0.00	0.00	0.00	3.72
1940	2601	0.037139	GCACATGCTGCCAAATGGAA	60.037	50.000	2.98	0.00	40.42	3.53
1977	2638	1.205893	GAGGATCTTCACGCAGTCCTT	59.794	52.381	0.00	0.00	41.61	3.36
2099	2784	0.409092	TGGCCAAATCCATGGTGACT	59.591	50.000	12.58	0.00	42.75	3.41
2396	3096	1.119574	ATGCCGGCGTAGAGGGTATT	61.120	55.000	22.45	0.00	0.00	1.89
2408	3108	1.588667	CGCAACCAATAATGCCGGC	60.589	57.895	22.73	22.73	39.39	6.13
2409	3109	1.065600	CCGCAACCAATAATGCCGG	59.934	57.895	0.00	0.00	39.39	6.13
2485	3514	6.532302	GCAAATCATGTCAATCAATGCACTAA	59.468	34.615	0.00	0.00	0.00	2.24
2642	3671	2.391389	GCCTAAGTGCTGCGACACC	61.391	63.158	5.38	0.00	41.67	4.16
2702	3734	0.096108	GCTAACGAAGAAGCAGCTGC	59.904	55.000	31.53	31.53	39.20	5.25
2788	3822	4.159506	TGCCAAATCCAAACACTAATAGGC	59.840	41.667	0.00	0.00	37.75	3.93
2837	3871	5.531287	TGCACCTCTTCCTTTTCTTTCTAAC	59.469	40.000	0.00	0.00	0.00	2.34
2980	4016	0.929244	CAATCCCATTCCCACCTCCT	59.071	55.000	0.00	0.00	0.00	3.69
2983	4019	1.311059	GGCAATCCCATTCCCACCT	59.689	57.895	0.00	0.00	0.00	4.00
3004	4040	2.344093	ACTAGCTTGGGAGAAGGGAA	57.656	50.000	0.00	0.00	0.00	3.97
3020	4056	9.783081	ATGCATATGATTGAAGTGAACATACTA	57.217	29.630	6.97	0.00	0.00	1.82
3021	4057	8.687292	ATGCATATGATTGAAGTGAACATACT	57.313	30.769	6.97	0.00	0.00	2.12
3098	4136	9.480053	AACAGATTTGTCAAGAAAACCATTATG	57.520	29.630	0.00	0.00	36.23	1.90
3104	4142	7.706179	TGATCAAACAGATTTGTCAAGAAAACC	59.294	33.333	0.00	0.00	44.76	3.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.