Multiple sequence alignment - TraesCS1B01G040100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G040100 chr1B 100.000 3835 0 0 1 3835 19781669 19777835 0.000000e+00 7083.0
1 TraesCS1B01G040100 chr1B 98.152 3409 51 4 169 3566 19952350 19948943 0.000000e+00 5936.0
2 TraesCS1B01G040100 chr1B 98.124 3411 49 6 169 3566 19620920 19617512 0.000000e+00 5930.0
3 TraesCS1B01G040100 chr1B 98.123 3410 50 6 169 3566 19840473 19837066 0.000000e+00 5930.0
4 TraesCS1B01G040100 chr1B 97.721 3423 50 7 169 3566 19720879 19717460 0.000000e+00 5864.0
5 TraesCS1B01G040100 chr1B 98.972 2528 24 1 1039 3566 19892022 19889497 0.000000e+00 4523.0
6 TraesCS1B01G040100 chr1B 89.947 2646 201 26 328 2956 20048532 20045935 0.000000e+00 3352.0
7 TraesCS1B01G040100 chr1B 90.991 2320 171 26 321 2626 20554500 20556795 0.000000e+00 3092.0
8 TraesCS1B01G040100 chr1B 88.605 588 58 5 2747 3334 20556820 20557398 0.000000e+00 706.0
9 TraesCS1B01G040100 chr1B 98.905 274 2 1 3563 3835 405930681 405930408 4.450000e-134 488.0
10 TraesCS1B01G040100 chr1B 91.875 160 11 2 6 165 584915354 584915197 4.990000e-54 222.0
11 TraesCS1B01G040100 chr1B 93.182 132 8 1 169 300 20554247 20554377 3.910000e-45 193.0
12 TraesCS1B01G040100 chr1B 88.199 161 12 2 6 165 2261213 2261059 6.540000e-43 185.0
13 TraesCS1B01G040100 chr1D 93.053 2447 143 13 527 2956 13729091 13726655 0.000000e+00 3552.0
14 TraesCS1B01G040100 chr1D 93.387 2359 129 14 615 2956 13818152 13815804 0.000000e+00 3467.0
15 TraesCS1B01G040100 chr1D 90.223 358 32 2 2977 3332 13726662 13726306 7.500000e-127 464.0
16 TraesCS1B01G040100 chr1D 89.720 321 30 2 2977 3295 13815811 13815492 1.280000e-109 407.0
17 TraesCS1B01G040100 chr1D 85.903 227 16 4 169 381 13508695 13508471 1.070000e-55 228.0
18 TraesCS1B01G040100 chr1D 88.068 176 21 0 365 540 13970866 13970691 3.880000e-50 209.0
19 TraesCS1B01G040100 chr1D 82.773 238 19 7 169 392 13818853 13818624 3.910000e-45 193.0
20 TraesCS1B01G040100 chr1D 93.617 94 4 2 169 262 13729183 13729092 5.170000e-29 139.0
21 TraesCS1B01G040100 chr1A 90.947 2673 176 28 673 3334 14792339 14789722 0.000000e+00 3535.0
22 TraesCS1B01G040100 chr1A 88.960 2029 165 36 686 2672 14840306 14838295 0.000000e+00 2451.0
23 TraesCS1B01G040100 chr1A 82.195 410 53 15 2704 3096 14836682 14836276 6.140000e-88 335.0
24 TraesCS1B01G040100 chr1A 88.106 227 22 3 321 547 14795266 14795045 8.170000e-67 265.0
25 TraesCS1B01G040100 chr6A 99.267 273 1 1 3564 3835 100322476 100322204 3.440000e-135 492.0
26 TraesCS1B01G040100 chr7A 99.265 272 1 1 3565 3835 357351555 357351284 1.240000e-134 490.0
27 TraesCS1B01G040100 chr4D 99.265 272 1 1 3565 3835 78993800 78993529 1.240000e-134 490.0
28 TraesCS1B01G040100 chr4D 99.262 271 1 1 3566 3835 83143560 83143830 4.450000e-134 488.0
29 TraesCS1B01G040100 chr3D 99.265 272 1 1 3565 3835 371842311 371842582 1.240000e-134 490.0
30 TraesCS1B01G040100 chrUn 99.262 271 1 1 3566 3835 87050786 87050516 4.450000e-134 488.0
31 TraesCS1B01G040100 chrUn 86.228 167 9 8 1 165 226014097 226014251 6.590000e-38 169.0
32 TraesCS1B01G040100 chr2D 98.201 278 4 1 3559 3835 106329388 106329665 5.760000e-133 484.0
33 TraesCS1B01G040100 chr2D 82.653 98 14 3 3336 3432 79274645 79274550 2.460000e-12 84.2
34 TraesCS1B01G040100 chr7B 97.183 284 6 2 3553 3835 121350886 121350604 2.680000e-131 479.0
35 TraesCS1B01G040100 chr7B 90.419 167 14 2 1 165 494493849 494493683 6.450000e-53 219.0
36 TraesCS1B01G040100 chr3B 94.545 165 7 2 3 165 826853663 826853827 1.770000e-63 254.0
37 TraesCS1B01G040100 chr4B 92.941 170 7 2 1 165 324030564 324030733 3.830000e-60 243.0
38 TraesCS1B01G040100 chr4B 91.018 167 12 3 1 165 157489652 157489487 4.990000e-54 222.0
39 TraesCS1B01G040100 chr4B 90.361 166 10 2 1 165 538431008 538430848 3.000000e-51 213.0
40 TraesCS1B01G040100 chr4B 88.623 167 10 7 1 165 332309293 332309452 1.090000e-45 195.0
41 TraesCS1B01G040100 chr5B 87.000 100 12 1 3336 3434 504813203 504813302 1.130000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G040100 chr1B 19777835 19781669 3834 True 7083.000000 7083 100.000000 1 3835 1 chr1B.!!$R4 3834
1 TraesCS1B01G040100 chr1B 19948943 19952350 3407 True 5936.000000 5936 98.152000 169 3566 1 chr1B.!!$R7 3397
2 TraesCS1B01G040100 chr1B 19617512 19620920 3408 True 5930.000000 5930 98.124000 169 3566 1 chr1B.!!$R2 3397
3 TraesCS1B01G040100 chr1B 19837066 19840473 3407 True 5930.000000 5930 98.123000 169 3566 1 chr1B.!!$R5 3397
4 TraesCS1B01G040100 chr1B 19717460 19720879 3419 True 5864.000000 5864 97.721000 169 3566 1 chr1B.!!$R3 3397
5 TraesCS1B01G040100 chr1B 19889497 19892022 2525 True 4523.000000 4523 98.972000 1039 3566 1 chr1B.!!$R6 2527
6 TraesCS1B01G040100 chr1B 20045935 20048532 2597 True 3352.000000 3352 89.947000 328 2956 1 chr1B.!!$R8 2628
7 TraesCS1B01G040100 chr1B 20554247 20557398 3151 False 1330.333333 3092 90.926000 169 3334 3 chr1B.!!$F1 3165
8 TraesCS1B01G040100 chr1D 13726306 13729183 2877 True 1385.000000 3552 92.297667 169 3332 3 chr1D.!!$R3 3163
9 TraesCS1B01G040100 chr1D 13815492 13818853 3361 True 1355.666667 3467 88.626667 169 3295 3 chr1D.!!$R4 3126
10 TraesCS1B01G040100 chr1A 14789722 14795266 5544 True 1900.000000 3535 89.526500 321 3334 2 chr1A.!!$R1 3013
11 TraesCS1B01G040100 chr1A 14836276 14840306 4030 True 1393.000000 2451 85.577500 686 3096 2 chr1A.!!$R2 2410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 3763 0.236449 CGGAACACGGCAAACTTACC 59.764 55.0 0.0 0.0 39.42 2.85 F
882 3909 0.991920 AAACCCAGTCGTCCCATCAT 59.008 50.0 0.0 0.0 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2572 5653 1.300931 GAGACACGCAGCTGAACCA 60.301 57.895 20.43 0.0 0.0 3.67 R
2873 7560 5.526479 TGGTAAAGTGTATACGTGCAAACAA 59.474 36.000 0.00 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.323985 ACTTTATTTGCATCTTTACTTTTTGCA 57.676 25.926 0.00 0.00 41.22 4.08
32 33 9.709495 TTATTTGCATCTTTACTTTTTGCATCT 57.291 25.926 0.00 0.00 42.34 2.90
34 35 9.880157 ATTTGCATCTTTACTTTTTGCATCTAT 57.120 25.926 0.00 0.00 42.34 1.98
95 96 8.621532 ACTATCTCTATCAGATCTCACTTGAC 57.378 38.462 0.00 0.00 41.39 3.18
96 97 8.217111 ACTATCTCTATCAGATCTCACTTGACA 58.783 37.037 0.00 0.00 41.39 3.58
97 98 7.894753 ATCTCTATCAGATCTCACTTGACAA 57.105 36.000 0.00 0.00 37.24 3.18
98 99 7.094508 TCTCTATCAGATCTCACTTGACAAC 57.905 40.000 0.00 0.00 0.00 3.32
99 100 6.096141 TCTCTATCAGATCTCACTTGACAACC 59.904 42.308 0.00 0.00 0.00 3.77
100 101 3.685139 TCAGATCTCACTTGACAACCC 57.315 47.619 0.00 0.00 0.00 4.11
101 102 2.303022 TCAGATCTCACTTGACAACCCC 59.697 50.000 0.00 0.00 0.00 4.95
102 103 2.304180 CAGATCTCACTTGACAACCCCT 59.696 50.000 0.00 0.00 0.00 4.79
103 104 2.982488 AGATCTCACTTGACAACCCCTT 59.018 45.455 0.00 0.00 0.00 3.95
104 105 3.395941 AGATCTCACTTGACAACCCCTTT 59.604 43.478 0.00 0.00 0.00 3.11
105 106 4.597507 AGATCTCACTTGACAACCCCTTTA 59.402 41.667 0.00 0.00 0.00 1.85
106 107 4.993705 TCTCACTTGACAACCCCTTTAT 57.006 40.909 0.00 0.00 0.00 1.40
107 108 5.319043 TCTCACTTGACAACCCCTTTATT 57.681 39.130 0.00 0.00 0.00 1.40
108 109 5.701224 TCTCACTTGACAACCCCTTTATTT 58.299 37.500 0.00 0.00 0.00 1.40
109 110 5.768164 TCTCACTTGACAACCCCTTTATTTC 59.232 40.000 0.00 0.00 0.00 2.17
110 111 5.450453 TCACTTGACAACCCCTTTATTTCA 58.550 37.500 0.00 0.00 0.00 2.69
111 112 6.074648 TCACTTGACAACCCCTTTATTTCAT 58.925 36.000 0.00 0.00 0.00 2.57
112 113 6.553100 TCACTTGACAACCCCTTTATTTCATT 59.447 34.615 0.00 0.00 0.00 2.57
113 114 6.868339 CACTTGACAACCCCTTTATTTCATTC 59.132 38.462 0.00 0.00 0.00 2.67
114 115 5.637006 TGACAACCCCTTTATTTCATTCG 57.363 39.130 0.00 0.00 0.00 3.34
115 116 5.074115 TGACAACCCCTTTATTTCATTCGT 58.926 37.500 0.00 0.00 0.00 3.85
116 117 5.536916 TGACAACCCCTTTATTTCATTCGTT 59.463 36.000 0.00 0.00 0.00 3.85
117 118 5.778862 ACAACCCCTTTATTTCATTCGTTG 58.221 37.500 0.00 0.00 35.40 4.10
118 119 4.450082 ACCCCTTTATTTCATTCGTTGC 57.550 40.909 0.00 0.00 0.00 4.17
119 120 3.119637 ACCCCTTTATTTCATTCGTTGCG 60.120 43.478 0.00 0.00 0.00 4.85
120 121 3.127895 CCCCTTTATTTCATTCGTTGCGA 59.872 43.478 0.00 0.00 0.00 5.10
121 122 4.342772 CCCTTTATTTCATTCGTTGCGAG 58.657 43.478 0.00 0.00 37.14 5.03
122 123 4.142687 CCCTTTATTTCATTCGTTGCGAGT 60.143 41.667 0.00 0.00 37.14 4.18
123 124 5.390613 CCTTTATTTCATTCGTTGCGAGTT 58.609 37.500 0.00 0.00 37.14 3.01
124 125 5.508224 CCTTTATTTCATTCGTTGCGAGTTC 59.492 40.000 0.00 0.00 37.14 3.01
125 126 5.856126 TTATTTCATTCGTTGCGAGTTCT 57.144 34.783 0.00 0.00 37.14 3.01
126 127 3.788434 TTTCATTCGTTGCGAGTTCTC 57.212 42.857 0.00 0.00 37.14 2.87
127 128 2.432206 TCATTCGTTGCGAGTTCTCA 57.568 45.000 0.00 0.00 37.14 3.27
128 129 2.328473 TCATTCGTTGCGAGTTCTCAG 58.672 47.619 0.00 0.00 37.14 3.35
129 130 2.061773 CATTCGTTGCGAGTTCTCAGT 58.938 47.619 0.00 0.00 37.14 3.41
130 131 2.218953 TTCGTTGCGAGTTCTCAGTT 57.781 45.000 0.00 0.00 37.14 3.16
131 132 2.218953 TCGTTGCGAGTTCTCAGTTT 57.781 45.000 0.00 0.00 0.00 2.66
132 133 1.858458 TCGTTGCGAGTTCTCAGTTTG 59.142 47.619 0.00 0.00 0.00 2.93
133 134 1.593006 CGTTGCGAGTTCTCAGTTTGT 59.407 47.619 0.00 0.00 0.00 2.83
134 135 2.030457 CGTTGCGAGTTCTCAGTTTGTT 59.970 45.455 0.00 0.00 0.00 2.83
135 136 3.485216 CGTTGCGAGTTCTCAGTTTGTTT 60.485 43.478 0.00 0.00 0.00 2.83
136 137 3.673746 TGCGAGTTCTCAGTTTGTTTG 57.326 42.857 0.00 0.00 0.00 2.93
137 138 3.006940 TGCGAGTTCTCAGTTTGTTTGT 58.993 40.909 0.00 0.00 0.00 2.83
138 139 3.181511 TGCGAGTTCTCAGTTTGTTTGTG 60.182 43.478 0.00 0.00 0.00 3.33
139 140 3.181510 GCGAGTTCTCAGTTTGTTTGTGT 60.182 43.478 0.00 0.00 0.00 3.72
140 141 4.033587 GCGAGTTCTCAGTTTGTTTGTGTA 59.966 41.667 0.00 0.00 0.00 2.90
141 142 5.728255 CGAGTTCTCAGTTTGTTTGTGTAG 58.272 41.667 0.79 0.00 0.00 2.74
142 143 5.276868 CGAGTTCTCAGTTTGTTTGTGTAGG 60.277 44.000 0.79 0.00 0.00 3.18
143 144 5.497474 AGTTCTCAGTTTGTTTGTGTAGGT 58.503 37.500 0.00 0.00 0.00 3.08
144 145 5.354234 AGTTCTCAGTTTGTTTGTGTAGGTG 59.646 40.000 0.00 0.00 0.00 4.00
145 146 3.625764 TCTCAGTTTGTTTGTGTAGGTGC 59.374 43.478 0.00 0.00 0.00 5.01
146 147 2.353269 TCAGTTTGTTTGTGTAGGTGCG 59.647 45.455 0.00 0.00 0.00 5.34
147 148 2.096819 CAGTTTGTTTGTGTAGGTGCGT 59.903 45.455 0.00 0.00 0.00 5.24
148 149 2.096819 AGTTTGTTTGTGTAGGTGCGTG 59.903 45.455 0.00 0.00 0.00 5.34
149 150 1.018148 TTGTTTGTGTAGGTGCGTGG 58.982 50.000 0.00 0.00 0.00 4.94
150 151 0.816018 TGTTTGTGTAGGTGCGTGGG 60.816 55.000 0.00 0.00 0.00 4.61
151 152 0.533308 GTTTGTGTAGGTGCGTGGGA 60.533 55.000 0.00 0.00 0.00 4.37
152 153 0.533308 TTTGTGTAGGTGCGTGGGAC 60.533 55.000 0.00 0.00 0.00 4.46
153 154 1.404479 TTGTGTAGGTGCGTGGGACT 61.404 55.000 0.00 0.00 0.00 3.85
154 155 1.370064 GTGTAGGTGCGTGGGACTT 59.630 57.895 0.00 0.00 0.00 3.01
155 156 0.250166 GTGTAGGTGCGTGGGACTTT 60.250 55.000 0.00 0.00 0.00 2.66
156 157 0.470766 TGTAGGTGCGTGGGACTTTT 59.529 50.000 0.00 0.00 0.00 2.27
157 158 0.872388 GTAGGTGCGTGGGACTTTTG 59.128 55.000 0.00 0.00 0.00 2.44
158 159 0.759959 TAGGTGCGTGGGACTTTTGA 59.240 50.000 0.00 0.00 0.00 2.69
159 160 0.535102 AGGTGCGTGGGACTTTTGAG 60.535 55.000 0.00 0.00 0.00 3.02
160 161 1.515521 GGTGCGTGGGACTTTTGAGG 61.516 60.000 0.00 0.00 0.00 3.86
161 162 0.534203 GTGCGTGGGACTTTTGAGGA 60.534 55.000 0.00 0.00 0.00 3.71
162 163 0.250295 TGCGTGGGACTTTTGAGGAG 60.250 55.000 0.00 0.00 0.00 3.69
163 164 1.578206 GCGTGGGACTTTTGAGGAGC 61.578 60.000 0.00 0.00 0.00 4.70
164 165 0.955919 CGTGGGACTTTTGAGGAGCC 60.956 60.000 0.00 0.00 0.00 4.70
165 166 0.609406 GTGGGACTTTTGAGGAGCCC 60.609 60.000 0.00 0.00 33.64 5.19
166 167 1.065410 TGGGACTTTTGAGGAGCCCA 61.065 55.000 0.00 0.00 37.80 5.36
167 168 0.332972 GGGACTTTTGAGGAGCCCAT 59.667 55.000 0.00 0.00 33.41 4.00
214 215 9.435688 GCTTTTGATTAACCCATCAATTAAACT 57.564 29.630 0.00 0.00 41.72 2.66
613 1009 0.253610 ACCACCCTGTGTTTGACGAA 59.746 50.000 0.00 0.00 0.00 3.85
685 3696 7.271511 AGTTCCTGATATTAAGAACTCAGCAG 58.728 38.462 5.82 0.00 44.19 4.24
752 3763 0.236449 CGGAACACGGCAAACTTACC 59.764 55.000 0.00 0.00 39.42 2.85
862 3878 6.351117 GCTCCTTAAGACGGCTATTATGGTAT 60.351 42.308 3.36 0.00 31.44 2.73
864 3880 8.654485 TCCTTAAGACGGCTATTATGGTATAA 57.346 34.615 3.36 0.00 31.44 0.98
865 3881 9.092338 TCCTTAAGACGGCTATTATGGTATAAA 57.908 33.333 3.36 0.00 31.44 1.40
866 3882 9.148104 CCTTAAGACGGCTATTATGGTATAAAC 57.852 37.037 3.36 0.00 0.00 2.01
867 3883 9.148104 CTTAAGACGGCTATTATGGTATAAACC 57.852 37.037 0.00 0.00 46.98 3.27
871 3897 5.308759 ACGGCTATTATGGTATAAACCCAGT 59.691 40.000 0.00 0.00 46.16 4.00
882 3909 0.991920 AAACCCAGTCGTCCCATCAT 59.008 50.000 0.00 0.00 0.00 2.45
1455 4528 1.383799 CATCAAGGAGTGGGGCCAA 59.616 57.895 4.39 0.00 0.00 4.52
1723 4796 2.041081 TCCAAGTCCCATTTGGATTCGT 59.959 45.455 2.73 0.00 46.84 3.85
2449 5523 9.144085 GTAAGAATTGATATGCGTTTTTACTCG 57.856 33.333 0.00 0.00 0.00 4.18
2572 5653 7.414098 GCATTGTCTAAATCCTCAAACACGTAT 60.414 37.037 0.00 0.00 0.00 3.06
2873 7560 8.593945 ACAGGTCAATCCATTTGTTATTGTAT 57.406 30.769 0.00 0.00 39.02 2.29
2889 7576 8.718734 TGTTATTGTATTGTTTGCACGTATACA 58.281 29.630 3.32 1.84 34.05 2.29
2894 7581 8.307921 TGTATTGTTTGCACGTATACACTTTA 57.692 30.769 3.32 0.00 32.36 1.85
2950 7656 5.014202 GCTTTTCACCCCAGGAACTTTATA 58.986 41.667 0.00 0.00 34.60 0.98
3105 7841 5.232463 TGGTGTTATGGTTTAGAGACGTTC 58.768 41.667 0.00 0.00 0.00 3.95
3132 7868 6.455647 CATGCTCCCGATAACATCTTTACTA 58.544 40.000 0.00 0.00 0.00 1.82
3411 8148 4.675510 CTGCTCCATTTTGCGTGAATAAT 58.324 39.130 0.00 0.00 0.00 1.28
3569 8309 6.959671 TTTCCATTGAAAACACACAAACTC 57.040 33.333 0.00 0.00 37.53 3.01
3570 8310 5.004922 TCCATTGAAAACACACAAACTCC 57.995 39.130 0.00 0.00 0.00 3.85
3571 8311 3.796178 CCATTGAAAACACACAAACTCCG 59.204 43.478 0.00 0.00 0.00 4.63
3572 8312 2.553079 TGAAAACACACAAACTCCGC 57.447 45.000 0.00 0.00 0.00 5.54
3573 8313 1.133407 TGAAAACACACAAACTCCGCC 59.867 47.619 0.00 0.00 0.00 6.13
3574 8314 1.404035 GAAAACACACAAACTCCGCCT 59.596 47.619 0.00 0.00 0.00 5.52
3575 8315 2.335316 AAACACACAAACTCCGCCTA 57.665 45.000 0.00 0.00 0.00 3.93
3576 8316 2.561478 AACACACAAACTCCGCCTAT 57.439 45.000 0.00 0.00 0.00 2.57
3577 8317 1.808411 ACACACAAACTCCGCCTATG 58.192 50.000 0.00 0.00 0.00 2.23
3578 8318 1.071699 ACACACAAACTCCGCCTATGT 59.928 47.619 0.00 0.00 0.00 2.29
3579 8319 2.151202 CACACAAACTCCGCCTATGTT 58.849 47.619 0.00 0.00 0.00 2.71
3580 8320 2.095768 CACACAAACTCCGCCTATGTTG 60.096 50.000 0.00 0.00 0.00 3.33
3581 8321 2.151202 CACAAACTCCGCCTATGTTGT 58.849 47.619 0.00 0.00 0.00 3.32
3582 8322 2.159627 CACAAACTCCGCCTATGTTGTC 59.840 50.000 0.00 0.00 0.00 3.18
3583 8323 2.038557 ACAAACTCCGCCTATGTTGTCT 59.961 45.455 0.00 0.00 0.00 3.41
3584 8324 2.673368 CAAACTCCGCCTATGTTGTCTC 59.327 50.000 0.00 0.00 0.00 3.36
3585 8325 1.557099 ACTCCGCCTATGTTGTCTCA 58.443 50.000 0.00 0.00 0.00 3.27
3586 8326 1.899814 ACTCCGCCTATGTTGTCTCAA 59.100 47.619 0.00 0.00 0.00 3.02
3587 8327 2.271800 CTCCGCCTATGTTGTCTCAAC 58.728 52.381 5.78 5.78 0.00 3.18
3588 8328 1.621317 TCCGCCTATGTTGTCTCAACA 59.379 47.619 15.83 15.83 34.31 3.33
3589 8329 2.236146 TCCGCCTATGTTGTCTCAACAT 59.764 45.455 24.50 24.50 42.82 2.71
3590 8330 3.449377 TCCGCCTATGTTGTCTCAACATA 59.551 43.478 24.21 24.21 40.87 2.29
3595 8335 2.093306 TGTTGTCTCAACATAGCCGG 57.907 50.000 10.63 0.00 34.73 6.13
3596 8336 1.346395 TGTTGTCTCAACATAGCCGGT 59.654 47.619 1.90 0.00 34.73 5.28
3597 8337 2.000447 GTTGTCTCAACATAGCCGGTC 59.000 52.381 1.90 0.00 34.73 4.79
3598 8338 0.535335 TGTCTCAACATAGCCGGTCC 59.465 55.000 1.90 0.00 0.00 4.46
3599 8339 0.179081 GTCTCAACATAGCCGGTCCC 60.179 60.000 1.90 0.00 0.00 4.46
3600 8340 0.616395 TCTCAACATAGCCGGTCCCA 60.616 55.000 1.90 0.00 0.00 4.37
3601 8341 0.251916 CTCAACATAGCCGGTCCCAA 59.748 55.000 1.90 0.00 0.00 4.12
3602 8342 0.251916 TCAACATAGCCGGTCCCAAG 59.748 55.000 1.90 0.00 0.00 3.61
3603 8343 1.077716 AACATAGCCGGTCCCAAGC 60.078 57.895 1.90 0.00 0.00 4.01
3604 8344 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
3605 8345 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
3610 8350 3.006728 CGGTCCCAAGCCCAGGTA 61.007 66.667 0.00 0.00 0.00 3.08
3611 8351 2.598787 CGGTCCCAAGCCCAGGTAA 61.599 63.158 0.00 0.00 0.00 2.85
3612 8352 1.771646 GGTCCCAAGCCCAGGTAAA 59.228 57.895 0.00 0.00 0.00 2.01
3613 8353 0.323451 GGTCCCAAGCCCAGGTAAAG 60.323 60.000 0.00 0.00 0.00 1.85
3614 8354 0.323451 GTCCCAAGCCCAGGTAAAGG 60.323 60.000 0.00 0.00 0.00 3.11
3615 8355 0.476808 TCCCAAGCCCAGGTAAAGGA 60.477 55.000 0.00 0.00 0.00 3.36
3616 8356 0.034089 CCCAAGCCCAGGTAAAGGAG 60.034 60.000 0.00 0.00 0.00 3.69
3617 8357 0.034089 CCAAGCCCAGGTAAAGGAGG 60.034 60.000 0.00 0.00 0.00 4.30
3618 8358 0.991920 CAAGCCCAGGTAAAGGAGGA 59.008 55.000 0.00 0.00 0.00 3.71
3619 8359 1.065126 CAAGCCCAGGTAAAGGAGGAG 60.065 57.143 0.00 0.00 0.00 3.69
3620 8360 0.621862 AGCCCAGGTAAAGGAGGAGG 60.622 60.000 0.00 0.00 0.00 4.30
3621 8361 1.636769 GCCCAGGTAAAGGAGGAGGG 61.637 65.000 0.00 0.00 37.87 4.30
3622 8362 0.253207 CCCAGGTAAAGGAGGAGGGT 60.253 60.000 0.00 0.00 0.00 4.34
3623 8363 1.670059 CCAGGTAAAGGAGGAGGGTT 58.330 55.000 0.00 0.00 0.00 4.11
3624 8364 1.282157 CCAGGTAAAGGAGGAGGGTTG 59.718 57.143 0.00 0.00 0.00 3.77
3625 8365 1.985895 CAGGTAAAGGAGGAGGGTTGT 59.014 52.381 0.00 0.00 0.00 3.32
3626 8366 1.985895 AGGTAAAGGAGGAGGGTTGTG 59.014 52.381 0.00 0.00 0.00 3.33
3627 8367 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
3628 8368 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
3629 8369 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
3630 8370 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
3631 8371 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
3632 8372 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
3633 8373 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
3634 8374 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
3635 8375 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
3636 8376 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
3637 8377 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
3638 8378 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
3639 8379 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
3640 8380 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
3651 8391 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
3652 8392 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
3653 8393 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
3654 8394 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
3655 8395 1.399343 GGCGAGCCAACGTAAAAACTC 60.399 52.381 9.58 0.00 35.81 3.01
3656 8396 1.262151 GCGAGCCAACGTAAAAACTCA 59.738 47.619 0.00 0.00 35.59 3.41
3657 8397 2.661979 GCGAGCCAACGTAAAAACTCAG 60.662 50.000 0.00 0.00 35.59 3.35
3658 8398 2.661979 CGAGCCAACGTAAAAACTCAGC 60.662 50.000 0.00 0.00 0.00 4.26
3659 8399 1.607148 AGCCAACGTAAAAACTCAGCC 59.393 47.619 0.00 0.00 0.00 4.85
3660 8400 1.335496 GCCAACGTAAAAACTCAGCCA 59.665 47.619 0.00 0.00 0.00 4.75
3661 8401 2.857104 GCCAACGTAAAAACTCAGCCAC 60.857 50.000 0.00 0.00 0.00 5.01
3662 8402 2.616842 CCAACGTAAAAACTCAGCCACT 59.383 45.455 0.00 0.00 0.00 4.00
3663 8403 3.303791 CCAACGTAAAAACTCAGCCACTC 60.304 47.826 0.00 0.00 0.00 3.51
3664 8404 3.470645 ACGTAAAAACTCAGCCACTCT 57.529 42.857 0.00 0.00 0.00 3.24
3665 8405 3.805207 ACGTAAAAACTCAGCCACTCTT 58.195 40.909 0.00 0.00 0.00 2.85
3666 8406 4.952460 ACGTAAAAACTCAGCCACTCTTA 58.048 39.130 0.00 0.00 0.00 2.10
3667 8407 5.548406 ACGTAAAAACTCAGCCACTCTTAT 58.452 37.500 0.00 0.00 0.00 1.73
3668 8408 5.408604 ACGTAAAAACTCAGCCACTCTTATG 59.591 40.000 0.00 0.00 0.00 1.90
3669 8409 5.163854 CGTAAAAACTCAGCCACTCTTATGG 60.164 44.000 0.00 0.00 43.26 2.74
3670 8410 4.640771 AAAACTCAGCCACTCTTATGGA 57.359 40.909 0.00 0.00 43.02 3.41
3671 8411 3.902881 AACTCAGCCACTCTTATGGAG 57.097 47.619 0.00 0.00 43.02 3.86
3672 8412 3.107402 ACTCAGCCACTCTTATGGAGA 57.893 47.619 0.00 0.00 44.45 3.71
3673 8413 3.652055 ACTCAGCCACTCTTATGGAGAT 58.348 45.455 0.00 0.00 44.45 2.75
3674 8414 3.387374 ACTCAGCCACTCTTATGGAGATG 59.613 47.826 0.00 0.00 44.45 2.90
3675 8415 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
3676 8416 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
3677 8417 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
3678 8418 4.574013 CAGCCACTCTTATGGAGATGAAAC 59.426 45.833 0.00 0.00 44.45 2.78
3679 8419 3.879892 GCCACTCTTATGGAGATGAAACC 59.120 47.826 0.00 0.00 44.45 3.27
3680 8420 4.455606 CCACTCTTATGGAGATGAAACCC 58.544 47.826 4.83 0.00 44.45 4.11
3681 8421 4.080356 CCACTCTTATGGAGATGAAACCCA 60.080 45.833 4.83 0.00 44.45 4.51
3682 8422 5.500234 CACTCTTATGGAGATGAAACCCAA 58.500 41.667 4.83 0.00 44.45 4.12
3683 8423 5.945784 CACTCTTATGGAGATGAAACCCAAA 59.054 40.000 4.83 0.00 44.45 3.28
3684 8424 6.434028 CACTCTTATGGAGATGAAACCCAAAA 59.566 38.462 4.83 0.00 44.45 2.44
3685 8425 6.660949 ACTCTTATGGAGATGAAACCCAAAAG 59.339 38.462 4.83 0.00 44.45 2.27
3686 8426 6.789268 TCTTATGGAGATGAAACCCAAAAGA 58.211 36.000 0.00 0.00 33.15 2.52
3687 8427 7.413446 TCTTATGGAGATGAAACCCAAAAGAT 58.587 34.615 0.00 0.00 33.15 2.40
3688 8428 7.895429 TCTTATGGAGATGAAACCCAAAAGATT 59.105 33.333 0.00 0.00 33.15 2.40
3689 8429 6.940430 ATGGAGATGAAACCCAAAAGATTT 57.060 33.333 0.00 0.00 33.15 2.17
3690 8430 6.745794 TGGAGATGAAACCCAAAAGATTTT 57.254 33.333 0.00 0.00 0.00 1.82
3691 8431 6.758254 TGGAGATGAAACCCAAAAGATTTTC 58.242 36.000 0.00 0.00 0.00 2.29
3692 8432 5.863935 GGAGATGAAACCCAAAAGATTTTCG 59.136 40.000 0.00 0.00 31.76 3.46
3693 8433 6.405278 AGATGAAACCCAAAAGATTTTCGT 57.595 33.333 0.00 0.00 31.76 3.85
3694 8434 6.816136 AGATGAAACCCAAAAGATTTTCGTT 58.184 32.000 0.00 0.00 31.76 3.85
3695 8435 6.701400 AGATGAAACCCAAAAGATTTTCGTTG 59.299 34.615 0.00 0.00 31.76 4.10
3696 8436 5.112686 TGAAACCCAAAAGATTTTCGTTGG 58.887 37.500 0.00 0.00 36.67 3.77
3698 8438 2.412870 CCCAAAAGATTTTCGTTGGGC 58.587 47.619 14.94 0.00 44.15 5.36
3699 8439 2.058057 CCAAAAGATTTTCGTTGGGCG 58.942 47.619 0.00 0.00 43.01 6.13
3700 8440 2.544903 CCAAAAGATTTTCGTTGGGCGT 60.545 45.455 0.00 0.00 42.13 5.68
3701 8441 3.304794 CCAAAAGATTTTCGTTGGGCGTA 60.305 43.478 0.00 0.00 42.13 4.42
3702 8442 4.291783 CAAAAGATTTTCGTTGGGCGTAA 58.708 39.130 0.00 0.00 42.13 3.18
3703 8443 3.547649 AAGATTTTCGTTGGGCGTAAC 57.452 42.857 0.00 0.00 42.13 2.50
3704 8444 1.808343 AGATTTTCGTTGGGCGTAACC 59.192 47.619 0.00 0.00 42.13 2.85
3713 8453 2.202756 GGCGTAACCCTCTCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
3714 8454 2.707849 GGCGTAACCCTCTCAGCGA 61.708 63.158 0.00 0.00 0.00 4.93
3715 8455 1.516603 GCGTAACCCTCTCAGCGAC 60.517 63.158 0.00 0.00 0.00 5.19
3716 8456 1.226323 CGTAACCCTCTCAGCGACG 60.226 63.158 0.00 0.00 0.00 5.12
3717 8457 1.516603 GTAACCCTCTCAGCGACGC 60.517 63.158 13.03 13.03 0.00 5.19
3718 8458 3.047718 TAACCCTCTCAGCGACGCG 62.048 63.158 15.18 3.53 0.00 6.01
3730 8470 3.849953 GACGCGCCACATCGGAAC 61.850 66.667 5.73 0.00 36.56 3.62
3743 8483 4.653888 GGAACCCGGGTGTGGTGG 62.654 72.222 31.05 0.00 35.88 4.61
3744 8484 3.562232 GAACCCGGGTGTGGTGGA 61.562 66.667 31.05 0.00 35.88 4.02
3745 8485 3.097830 AACCCGGGTGTGGTGGAA 61.098 61.111 31.05 0.00 35.88 3.53
3746 8486 2.627839 GAACCCGGGTGTGGTGGAAA 62.628 60.000 31.05 0.00 35.88 3.13
3747 8487 2.196229 CCCGGGTGTGGTGGAAAA 59.804 61.111 14.18 0.00 0.00 2.29
3748 8488 1.228737 CCCGGGTGTGGTGGAAAAT 60.229 57.895 14.18 0.00 0.00 1.82
3749 8489 1.531739 CCCGGGTGTGGTGGAAAATG 61.532 60.000 14.18 0.00 0.00 2.32
3750 8490 1.531739 CCGGGTGTGGTGGAAAATGG 61.532 60.000 0.00 0.00 0.00 3.16
3751 8491 1.531739 CGGGTGTGGTGGAAAATGGG 61.532 60.000 0.00 0.00 0.00 4.00
3752 8492 1.671166 GGTGTGGTGGAAAATGGGC 59.329 57.895 0.00 0.00 0.00 5.36
3753 8493 1.118356 GGTGTGGTGGAAAATGGGCA 61.118 55.000 0.00 0.00 0.00 5.36
3754 8494 0.755686 GTGTGGTGGAAAATGGGCAA 59.244 50.000 0.00 0.00 0.00 4.52
3755 8495 1.047002 TGTGGTGGAAAATGGGCAAG 58.953 50.000 0.00 0.00 0.00 4.01
3756 8496 0.321346 GTGGTGGAAAATGGGCAAGG 59.679 55.000 0.00 0.00 0.00 3.61
3757 8497 0.835543 TGGTGGAAAATGGGCAAGGG 60.836 55.000 0.00 0.00 0.00 3.95
3758 8498 1.296392 GTGGAAAATGGGCAAGGGC 59.704 57.895 0.00 0.00 40.13 5.19
3791 8531 3.925238 CAAGTGGCGCGCCGTATC 61.925 66.667 41.73 30.13 39.42 2.24
3792 8532 4.143333 AAGTGGCGCGCCGTATCT 62.143 61.111 41.73 31.65 39.42 1.98
3793 8533 3.659089 AAGTGGCGCGCCGTATCTT 62.659 57.895 41.73 34.53 39.42 2.40
3794 8534 3.925238 GTGGCGCGCCGTATCTTG 61.925 66.667 41.73 0.00 39.42 3.02
3795 8535 4.136511 TGGCGCGCCGTATCTTGA 62.137 61.111 41.73 21.94 39.42 3.02
3796 8536 2.661866 GGCGCGCCGTATCTTGAT 60.662 61.111 37.24 0.00 0.00 2.57
3797 8537 2.658707 GGCGCGCCGTATCTTGATC 61.659 63.158 37.24 7.16 0.00 2.92
3798 8538 2.658707 GCGCGCCGTATCTTGATCC 61.659 63.158 23.24 0.00 0.00 3.36
3799 8539 2.365068 CGCGCCGTATCTTGATCCG 61.365 63.158 0.00 0.00 0.00 4.18
3800 8540 2.022129 GCGCCGTATCTTGATCCGG 61.022 63.158 9.76 9.76 43.22 5.14
3801 8541 1.658114 CGCCGTATCTTGATCCGGA 59.342 57.895 16.84 6.61 43.01 5.14
3802 8542 0.243907 CGCCGTATCTTGATCCGGAT 59.756 55.000 19.21 19.21 43.01 4.18
3803 8543 1.471287 CGCCGTATCTTGATCCGGATA 59.529 52.381 19.15 1.03 43.01 2.59
3804 8544 2.731341 CGCCGTATCTTGATCCGGATAC 60.731 54.545 19.15 9.91 43.01 2.24
3817 8557 3.065575 GGATACGGTGGCAAGTGAG 57.934 57.895 7.07 0.00 0.00 3.51
3818 8558 1.090052 GGATACGGTGGCAAGTGAGC 61.090 60.000 7.07 0.00 0.00 4.26
3819 8559 1.421410 GATACGGTGGCAAGTGAGCG 61.421 60.000 7.07 0.00 38.97 5.03
3820 8560 1.884075 ATACGGTGGCAAGTGAGCGA 61.884 55.000 7.07 0.00 36.89 4.93
3821 8561 2.486636 TACGGTGGCAAGTGAGCGAG 62.487 60.000 7.07 0.00 36.89 5.03
3822 8562 2.743928 GGTGGCAAGTGAGCGAGG 60.744 66.667 0.00 0.00 34.64 4.63
3823 8563 2.343758 GTGGCAAGTGAGCGAGGA 59.656 61.111 0.00 0.00 34.64 3.71
3824 8564 1.078848 GTGGCAAGTGAGCGAGGAT 60.079 57.895 0.00 0.00 34.64 3.24
3825 8565 1.086634 GTGGCAAGTGAGCGAGGATC 61.087 60.000 0.00 0.00 34.64 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.719355 GTCAAGTGAGATCTGATAGAGATAGTA 57.281 37.037 0.00 0.00 41.91 1.82
70 71 8.217111 TGTCAAGTGAGATCTGATAGAGATAGT 58.783 37.037 0.00 0.00 41.91 2.12
71 72 8.620116 TGTCAAGTGAGATCTGATAGAGATAG 57.380 38.462 0.00 0.00 41.91 2.08
72 73 8.845227 GTTGTCAAGTGAGATCTGATAGAGATA 58.155 37.037 0.00 0.00 41.91 1.98
73 74 7.201902 GGTTGTCAAGTGAGATCTGATAGAGAT 60.202 40.741 0.00 0.00 44.78 2.75
74 75 6.096141 GGTTGTCAAGTGAGATCTGATAGAGA 59.904 42.308 0.00 0.00 34.25 3.10
75 76 6.272318 GGTTGTCAAGTGAGATCTGATAGAG 58.728 44.000 0.00 0.00 0.00 2.43
76 77 5.127845 GGGTTGTCAAGTGAGATCTGATAGA 59.872 44.000 0.00 0.00 0.00 1.98
77 78 5.355596 GGGTTGTCAAGTGAGATCTGATAG 58.644 45.833 0.00 0.00 0.00 2.08
78 79 4.162320 GGGGTTGTCAAGTGAGATCTGATA 59.838 45.833 0.00 0.00 0.00 2.15
79 80 3.054802 GGGGTTGTCAAGTGAGATCTGAT 60.055 47.826 0.00 0.00 0.00 2.90
80 81 2.303022 GGGGTTGTCAAGTGAGATCTGA 59.697 50.000 0.00 0.00 0.00 3.27
81 82 2.304180 AGGGGTTGTCAAGTGAGATCTG 59.696 50.000 0.00 0.00 0.00 2.90
82 83 2.625639 AGGGGTTGTCAAGTGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
83 84 3.425162 AAGGGGTTGTCAAGTGAGATC 57.575 47.619 0.00 0.00 0.00 2.75
84 85 3.884037 AAAGGGGTTGTCAAGTGAGAT 57.116 42.857 0.00 0.00 0.00 2.75
85 86 4.993705 ATAAAGGGGTTGTCAAGTGAGA 57.006 40.909 0.00 0.00 0.00 3.27
86 87 5.534654 TGAAATAAAGGGGTTGTCAAGTGAG 59.465 40.000 0.00 0.00 0.00 3.51
87 88 5.450453 TGAAATAAAGGGGTTGTCAAGTGA 58.550 37.500 0.00 0.00 0.00 3.41
88 89 5.782893 TGAAATAAAGGGGTTGTCAAGTG 57.217 39.130 0.00 0.00 0.00 3.16
89 90 6.294508 CGAATGAAATAAAGGGGTTGTCAAGT 60.295 38.462 0.00 0.00 0.00 3.16
90 91 6.092748 CGAATGAAATAAAGGGGTTGTCAAG 58.907 40.000 0.00 0.00 0.00 3.02
91 92 5.536916 ACGAATGAAATAAAGGGGTTGTCAA 59.463 36.000 0.00 0.00 0.00 3.18
92 93 5.074115 ACGAATGAAATAAAGGGGTTGTCA 58.926 37.500 0.00 0.00 0.00 3.58
93 94 5.638596 ACGAATGAAATAAAGGGGTTGTC 57.361 39.130 0.00 0.00 0.00 3.18
94 95 5.778862 CAACGAATGAAATAAAGGGGTTGT 58.221 37.500 0.00 0.00 0.00 3.32
95 96 4.625311 GCAACGAATGAAATAAAGGGGTTG 59.375 41.667 0.00 0.00 36.30 3.77
96 97 4.617298 CGCAACGAATGAAATAAAGGGGTT 60.617 41.667 0.00 0.00 0.00 4.11
97 98 3.119637 CGCAACGAATGAAATAAAGGGGT 60.120 43.478 0.00 0.00 0.00 4.95
98 99 3.127895 TCGCAACGAATGAAATAAAGGGG 59.872 43.478 0.00 0.00 31.06 4.79
99 100 4.142687 ACTCGCAACGAATGAAATAAAGGG 60.143 41.667 0.00 0.00 34.74 3.95
100 101 4.969816 ACTCGCAACGAATGAAATAAAGG 58.030 39.130 0.00 0.00 34.74 3.11
101 102 6.307155 AGAACTCGCAACGAATGAAATAAAG 58.693 36.000 0.00 0.00 34.74 1.85
102 103 6.073494 TGAGAACTCGCAACGAATGAAATAAA 60.073 34.615 0.00 0.00 34.74 1.40
103 104 5.407084 TGAGAACTCGCAACGAATGAAATAA 59.593 36.000 0.00 0.00 34.74 1.40
104 105 4.926832 TGAGAACTCGCAACGAATGAAATA 59.073 37.500 0.00 0.00 34.74 1.40
105 106 3.745975 TGAGAACTCGCAACGAATGAAAT 59.254 39.130 0.00 0.00 34.74 2.17
106 107 3.127589 TGAGAACTCGCAACGAATGAAA 58.872 40.909 0.00 0.00 34.74 2.69
107 108 2.731451 CTGAGAACTCGCAACGAATGAA 59.269 45.455 0.00 0.00 34.74 2.57
108 109 2.288213 ACTGAGAACTCGCAACGAATGA 60.288 45.455 0.00 0.00 34.74 2.57
109 110 2.061773 ACTGAGAACTCGCAACGAATG 58.938 47.619 0.00 0.00 34.74 2.67
110 111 2.440539 ACTGAGAACTCGCAACGAAT 57.559 45.000 0.00 0.00 34.74 3.34
111 112 2.218953 AACTGAGAACTCGCAACGAA 57.781 45.000 0.00 0.00 34.74 3.85
112 113 1.858458 CAAACTGAGAACTCGCAACGA 59.142 47.619 0.00 0.00 0.00 3.85
113 114 1.593006 ACAAACTGAGAACTCGCAACG 59.407 47.619 0.00 0.00 0.00 4.10
114 115 3.675467 AACAAACTGAGAACTCGCAAC 57.325 42.857 0.00 0.00 0.00 4.17
115 116 3.438781 ACAAACAAACTGAGAACTCGCAA 59.561 39.130 0.00 0.00 0.00 4.85
116 117 3.006940 ACAAACAAACTGAGAACTCGCA 58.993 40.909 0.00 0.00 0.00 5.10
117 118 3.181510 ACACAAACAAACTGAGAACTCGC 60.182 43.478 0.00 0.00 0.00 5.03
118 119 4.600012 ACACAAACAAACTGAGAACTCG 57.400 40.909 0.00 0.00 0.00 4.18
119 120 5.585047 ACCTACACAAACAAACTGAGAACTC 59.415 40.000 0.00 0.00 0.00 3.01
120 121 5.354234 CACCTACACAAACAAACTGAGAACT 59.646 40.000 0.00 0.00 0.00 3.01
121 122 5.569413 CACCTACACAAACAAACTGAGAAC 58.431 41.667 0.00 0.00 0.00 3.01
122 123 4.095782 GCACCTACACAAACAAACTGAGAA 59.904 41.667 0.00 0.00 0.00 2.87
123 124 3.625764 GCACCTACACAAACAAACTGAGA 59.374 43.478 0.00 0.00 0.00 3.27
124 125 3.546020 CGCACCTACACAAACAAACTGAG 60.546 47.826 0.00 0.00 0.00 3.35
125 126 2.353269 CGCACCTACACAAACAAACTGA 59.647 45.455 0.00 0.00 0.00 3.41
126 127 2.096819 ACGCACCTACACAAACAAACTG 59.903 45.455 0.00 0.00 0.00 3.16
127 128 2.096819 CACGCACCTACACAAACAAACT 59.903 45.455 0.00 0.00 0.00 2.66
128 129 2.446282 CACGCACCTACACAAACAAAC 58.554 47.619 0.00 0.00 0.00 2.93
129 130 1.402259 CCACGCACCTACACAAACAAA 59.598 47.619 0.00 0.00 0.00 2.83
130 131 1.018148 CCACGCACCTACACAAACAA 58.982 50.000 0.00 0.00 0.00 2.83
131 132 0.816018 CCCACGCACCTACACAAACA 60.816 55.000 0.00 0.00 0.00 2.83
132 133 0.533308 TCCCACGCACCTACACAAAC 60.533 55.000 0.00 0.00 0.00 2.93
133 134 0.533308 GTCCCACGCACCTACACAAA 60.533 55.000 0.00 0.00 0.00 2.83
134 135 1.070105 GTCCCACGCACCTACACAA 59.930 57.895 0.00 0.00 0.00 3.33
135 136 1.404479 AAGTCCCACGCACCTACACA 61.404 55.000 0.00 0.00 0.00 3.72
136 137 0.250166 AAAGTCCCACGCACCTACAC 60.250 55.000 0.00 0.00 0.00 2.90
137 138 0.470766 AAAAGTCCCACGCACCTACA 59.529 50.000 0.00 0.00 0.00 2.74
138 139 0.872388 CAAAAGTCCCACGCACCTAC 59.128 55.000 0.00 0.00 0.00 3.18
139 140 0.759959 TCAAAAGTCCCACGCACCTA 59.240 50.000 0.00 0.00 0.00 3.08
140 141 0.535102 CTCAAAAGTCCCACGCACCT 60.535 55.000 0.00 0.00 0.00 4.00
141 142 1.515521 CCTCAAAAGTCCCACGCACC 61.516 60.000 0.00 0.00 0.00 5.01
142 143 0.534203 TCCTCAAAAGTCCCACGCAC 60.534 55.000 0.00 0.00 0.00 5.34
143 144 0.250295 CTCCTCAAAAGTCCCACGCA 60.250 55.000 0.00 0.00 0.00 5.24
144 145 1.578206 GCTCCTCAAAAGTCCCACGC 61.578 60.000 0.00 0.00 0.00 5.34
145 146 0.955919 GGCTCCTCAAAAGTCCCACG 60.956 60.000 0.00 0.00 0.00 4.94
146 147 0.609406 GGGCTCCTCAAAAGTCCCAC 60.609 60.000 0.00 0.00 32.06 4.61
147 148 1.065410 TGGGCTCCTCAAAAGTCCCA 61.065 55.000 0.00 0.00 37.74 4.37
148 149 0.332972 ATGGGCTCCTCAAAAGTCCC 59.667 55.000 0.00 0.00 37.74 4.46
149 150 2.222227 AATGGGCTCCTCAAAAGTCC 57.778 50.000 0.00 0.00 39.07 3.85
150 151 4.607293 AAAAATGGGCTCCTCAAAAGTC 57.393 40.909 0.00 0.00 0.00 3.01
151 152 4.898861 TGTAAAAATGGGCTCCTCAAAAGT 59.101 37.500 0.00 0.00 0.00 2.66
152 153 5.467035 TGTAAAAATGGGCTCCTCAAAAG 57.533 39.130 0.00 0.00 0.00 2.27
153 154 4.262420 GCTGTAAAAATGGGCTCCTCAAAA 60.262 41.667 0.00 0.00 0.00 2.44
154 155 3.258123 GCTGTAAAAATGGGCTCCTCAAA 59.742 43.478 0.00 0.00 0.00 2.69
155 156 2.825532 GCTGTAAAAATGGGCTCCTCAA 59.174 45.455 0.00 0.00 0.00 3.02
156 157 2.224992 TGCTGTAAAAATGGGCTCCTCA 60.225 45.455 0.00 0.00 0.00 3.86
157 158 2.446435 TGCTGTAAAAATGGGCTCCTC 58.554 47.619 0.00 0.00 0.00 3.71
158 159 2.603075 TGCTGTAAAAATGGGCTCCT 57.397 45.000 0.00 0.00 0.00 3.69
159 160 5.535753 AATATGCTGTAAAAATGGGCTCC 57.464 39.130 0.00 0.00 0.00 4.70
160 161 7.848223 AAAAATATGCTGTAAAAATGGGCTC 57.152 32.000 0.00 0.00 0.00 4.70
613 1009 4.809426 CGCCGAGTACATAAAAAGGAGAAT 59.191 41.667 0.00 0.00 0.00 2.40
685 3696 2.199236 CGGGTCGGCAATAGTTAAGAC 58.801 52.381 0.00 0.00 0.00 3.01
862 3878 1.646912 TGATGGGACGACTGGGTTTA 58.353 50.000 0.00 0.00 0.00 2.01
864 3880 1.874129 TATGATGGGACGACTGGGTT 58.126 50.000 0.00 0.00 0.00 4.11
865 3881 1.874129 TTATGATGGGACGACTGGGT 58.126 50.000 0.00 0.00 0.00 4.51
866 3882 3.492102 AATTATGATGGGACGACTGGG 57.508 47.619 0.00 0.00 0.00 4.45
867 3883 5.853936 TCTTAATTATGATGGGACGACTGG 58.146 41.667 0.00 0.00 0.00 4.00
871 3897 8.044309 TCTGTTTTCTTAATTATGATGGGACGA 58.956 33.333 2.19 0.00 0.00 4.20
882 3909 8.677148 ACTGAGCTTGTCTGTTTTCTTAATTA 57.323 30.769 0.00 0.00 33.76 1.40
1081 4154 2.711311 CGCCATTGATCAGCACCG 59.289 61.111 6.28 0.85 0.00 4.94
1189 4262 0.986550 GGGTAGGTGGCCTGGTACAT 60.987 60.000 3.32 0.00 38.20 2.29
1455 4528 0.321653 GGGTGATCTTTGACTGCGGT 60.322 55.000 0.00 0.00 0.00 5.68
1723 4796 2.434185 GAGCGCATGTCCGACCAA 60.434 61.111 11.47 0.00 0.00 3.67
2449 5523 2.035832 AGCACATACAACAGGGTTTTGC 59.964 45.455 0.00 0.00 0.00 3.68
2572 5653 1.300931 GAGACACGCAGCTGAACCA 60.301 57.895 20.43 0.00 0.00 3.67
2873 7560 5.526479 TGGTAAAGTGTATACGTGCAAACAA 59.474 36.000 0.00 0.00 0.00 2.83
2889 7576 5.160607 TCTCGATTCATGGTTGGTAAAGT 57.839 39.130 0.00 0.00 0.00 2.66
2894 7581 3.600388 GAACTCTCGATTCATGGTTGGT 58.400 45.455 0.00 0.00 0.00 3.67
3105 7841 1.802960 GATGTTATCGGGAGCATGCTG 59.197 52.381 28.27 11.47 0.00 4.41
3500 8240 8.785184 TTCCCCAATAAGTTTTTCCTAGAAAA 57.215 30.769 0.00 0.00 0.00 2.29
3566 8306 1.557099 TGAGACAACATAGGCGGAGT 58.443 50.000 0.00 0.00 0.00 3.85
3567 8307 2.271800 GTTGAGACAACATAGGCGGAG 58.728 52.381 9.32 0.00 0.00 4.63
3568 8308 1.621317 TGTTGAGACAACATAGGCGGA 59.379 47.619 12.32 0.00 31.49 5.54
3569 8309 2.093306 TGTTGAGACAACATAGGCGG 57.907 50.000 12.32 0.00 31.49 6.13
3574 8314 3.196901 ACCGGCTATGTTGAGACAACATA 59.803 43.478 25.32 25.32 40.87 2.29
3575 8315 2.027192 ACCGGCTATGTTGAGACAACAT 60.027 45.455 25.70 25.70 42.82 2.71
3576 8316 1.346395 ACCGGCTATGTTGAGACAACA 59.654 47.619 17.39 17.39 39.66 3.33
3577 8317 2.000447 GACCGGCTATGTTGAGACAAC 59.000 52.381 0.00 7.55 39.66 3.32
3578 8318 1.066430 GGACCGGCTATGTTGAGACAA 60.066 52.381 0.00 0.00 39.66 3.18
3579 8319 0.535335 GGACCGGCTATGTTGAGACA 59.465 55.000 0.00 0.00 40.71 3.41
3580 8320 0.179081 GGGACCGGCTATGTTGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
3581 8321 0.616395 TGGGACCGGCTATGTTGAGA 60.616 55.000 0.00 0.00 0.00 3.27
3582 8322 0.251916 TTGGGACCGGCTATGTTGAG 59.748 55.000 0.00 0.00 0.00 3.02
3583 8323 0.251916 CTTGGGACCGGCTATGTTGA 59.748 55.000 0.00 0.00 0.00 3.18
3584 8324 1.376609 GCTTGGGACCGGCTATGTTG 61.377 60.000 0.00 0.00 0.00 3.33
3585 8325 1.077716 GCTTGGGACCGGCTATGTT 60.078 57.895 0.00 0.00 0.00 2.71
3586 8326 2.590092 GCTTGGGACCGGCTATGT 59.410 61.111 0.00 0.00 0.00 2.29
3587 8327 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
3588 8328 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
3593 8333 2.132089 TTTACCTGGGCTTGGGACCG 62.132 60.000 0.00 0.00 45.75 4.79
3594 8334 0.323451 CTTTACCTGGGCTTGGGACC 60.323 60.000 0.00 0.00 42.24 4.46
3595 8335 0.323451 CCTTTACCTGGGCTTGGGAC 60.323 60.000 0.00 0.00 0.00 4.46
3596 8336 0.476808 TCCTTTACCTGGGCTTGGGA 60.477 55.000 0.00 0.00 0.00 4.37
3597 8337 0.034089 CTCCTTTACCTGGGCTTGGG 60.034 60.000 0.00 0.00 0.00 4.12
3598 8338 0.034089 CCTCCTTTACCTGGGCTTGG 60.034 60.000 0.00 0.00 0.00 3.61
3599 8339 0.991920 TCCTCCTTTACCTGGGCTTG 59.008 55.000 0.00 0.00 0.00 4.01
3600 8340 1.290134 CTCCTCCTTTACCTGGGCTT 58.710 55.000 0.00 0.00 0.00 4.35
3601 8341 0.621862 CCTCCTCCTTTACCTGGGCT 60.622 60.000 0.00 0.00 0.00 5.19
3602 8342 1.636769 CCCTCCTCCTTTACCTGGGC 61.637 65.000 0.00 0.00 0.00 5.36
3603 8343 0.253207 ACCCTCCTCCTTTACCTGGG 60.253 60.000 0.00 0.00 39.06 4.45
3604 8344 1.282157 CAACCCTCCTCCTTTACCTGG 59.718 57.143 0.00 0.00 0.00 4.45
3605 8345 1.985895 ACAACCCTCCTCCTTTACCTG 59.014 52.381 0.00 0.00 0.00 4.00
3606 8346 1.985895 CACAACCCTCCTCCTTTACCT 59.014 52.381 0.00 0.00 0.00 3.08
3607 8347 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
3608 8348 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
3609 8349 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
3610 8350 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
3611 8351 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
3612 8352 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
3613 8353 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3614 8354 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
3615 8355 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
3616 8356 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
3617 8357 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
3618 8358 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3619 8359 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
3620 8360 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
3621 8361 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
3622 8362 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
3623 8363 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
3624 8364 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
3634 8374 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
3635 8375 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
3636 8376 1.262151 TGAGTTTTTACGTTGGCTCGC 59.738 47.619 0.00 0.00 0.00 5.03
3637 8377 2.661979 GCTGAGTTTTTACGTTGGCTCG 60.662 50.000 0.00 1.70 0.00 5.03
3638 8378 2.350484 GGCTGAGTTTTTACGTTGGCTC 60.350 50.000 0.00 0.00 0.00 4.70
3639 8379 1.607148 GGCTGAGTTTTTACGTTGGCT 59.393 47.619 0.00 0.00 0.00 4.75
3640 8380 1.335496 TGGCTGAGTTTTTACGTTGGC 59.665 47.619 0.00 0.00 0.00 4.52
3641 8381 2.616842 AGTGGCTGAGTTTTTACGTTGG 59.383 45.455 0.00 0.00 0.00 3.77
3642 8382 3.560068 AGAGTGGCTGAGTTTTTACGTTG 59.440 43.478 0.00 0.00 0.00 4.10
3643 8383 3.805207 AGAGTGGCTGAGTTTTTACGTT 58.195 40.909 0.00 0.00 0.00 3.99
3644 8384 3.470645 AGAGTGGCTGAGTTTTTACGT 57.529 42.857 0.00 0.00 0.00 3.57
3645 8385 5.163854 CCATAAGAGTGGCTGAGTTTTTACG 60.164 44.000 0.00 0.00 31.43 3.18
3646 8386 5.938125 TCCATAAGAGTGGCTGAGTTTTTAC 59.062 40.000 0.00 0.00 39.19 2.01
3647 8387 6.013725 TCTCCATAAGAGTGGCTGAGTTTTTA 60.014 38.462 0.00 0.00 43.71 1.52
3648 8388 4.985538 TCCATAAGAGTGGCTGAGTTTTT 58.014 39.130 0.00 0.00 39.19 1.94
3649 8389 4.287067 TCTCCATAAGAGTGGCTGAGTTTT 59.713 41.667 0.00 0.00 43.71 2.43
3650 8390 3.840666 TCTCCATAAGAGTGGCTGAGTTT 59.159 43.478 0.00 0.00 43.71 2.66
3651 8391 3.445008 TCTCCATAAGAGTGGCTGAGTT 58.555 45.455 0.00 0.00 43.71 3.01
3652 8392 3.107402 TCTCCATAAGAGTGGCTGAGT 57.893 47.619 0.00 0.00 43.71 3.41
3653 8393 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
3654 8394 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
3655 8395 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
3656 8396 4.384647 GGTTTCATCTCCATAAGAGTGGCT 60.385 45.833 0.00 0.00 43.71 4.75
3657 8397 3.879892 GGTTTCATCTCCATAAGAGTGGC 59.120 47.826 0.00 0.00 43.71 5.01
3658 8398 4.080356 TGGGTTTCATCTCCATAAGAGTGG 60.080 45.833 0.00 0.00 43.71 4.00
3659 8399 5.102953 TGGGTTTCATCTCCATAAGAGTG 57.897 43.478 0.00 0.00 43.71 3.51
3660 8400 5.779241 TTGGGTTTCATCTCCATAAGAGT 57.221 39.130 0.00 0.00 43.71 3.24
3661 8401 6.886459 TCTTTTGGGTTTCATCTCCATAAGAG 59.114 38.462 9.33 0.00 40.80 2.85
3662 8402 6.789268 TCTTTTGGGTTTCATCTCCATAAGA 58.211 36.000 9.33 9.33 42.22 2.10
3663 8403 7.651027 ATCTTTTGGGTTTCATCTCCATAAG 57.349 36.000 0.00 0.00 39.39 1.73
3664 8404 8.434589 AAATCTTTTGGGTTTCATCTCCATAA 57.565 30.769 0.00 0.00 0.00 1.90
3665 8405 8.434589 AAAATCTTTTGGGTTTCATCTCCATA 57.565 30.769 0.00 0.00 0.00 2.74
3666 8406 6.940430 AAATCTTTTGGGTTTCATCTCCAT 57.060 33.333 0.00 0.00 0.00 3.41
3667 8407 6.516527 CGAAAATCTTTTGGGTTTCATCTCCA 60.517 38.462 0.00 0.00 31.66 3.86
3668 8408 5.863935 CGAAAATCTTTTGGGTTTCATCTCC 59.136 40.000 0.00 0.00 31.66 3.71
3669 8409 6.447162 ACGAAAATCTTTTGGGTTTCATCTC 58.553 36.000 0.00 0.00 31.27 2.75
3670 8410 6.405278 ACGAAAATCTTTTGGGTTTCATCT 57.595 33.333 0.00 0.00 31.27 2.90
3671 8411 6.073819 CCAACGAAAATCTTTTGGGTTTCATC 60.074 38.462 0.00 0.00 35.76 2.92
3672 8412 5.757808 CCAACGAAAATCTTTTGGGTTTCAT 59.242 36.000 0.00 0.00 35.76 2.57
3673 8413 5.112686 CCAACGAAAATCTTTTGGGTTTCA 58.887 37.500 0.00 0.00 35.76 2.69
3674 8414 5.651172 CCAACGAAAATCTTTTGGGTTTC 57.349 39.130 0.00 0.00 35.76 2.78
3696 8436 2.202756 CGCTGAGAGGGTTACGCC 60.203 66.667 0.00 0.00 0.00 5.68
3697 8437 1.516603 GTCGCTGAGAGGGTTACGC 60.517 63.158 0.00 0.00 0.00 4.42
3698 8438 1.226323 CGTCGCTGAGAGGGTTACG 60.226 63.158 0.00 0.00 0.00 3.18
3699 8439 1.516603 GCGTCGCTGAGAGGGTTAC 60.517 63.158 10.68 0.00 35.42 2.50
3700 8440 2.882876 GCGTCGCTGAGAGGGTTA 59.117 61.111 10.68 0.00 35.42 2.85
3701 8441 4.421479 CGCGTCGCTGAGAGGGTT 62.421 66.667 16.36 0.00 35.42 4.11
3713 8453 3.849953 GTTCCGATGTGGCGCGTC 61.850 66.667 2.29 2.29 37.80 5.19
3726 8466 4.653888 CCACCACACCCGGGTTCC 62.654 72.222 27.83 0.00 36.19 3.62
3727 8467 2.627839 TTTCCACCACACCCGGGTTC 62.628 60.000 27.83 0.00 36.19 3.62
3728 8468 2.226149 TTTTCCACCACACCCGGGTT 62.226 55.000 27.83 13.37 36.19 4.11
3729 8469 2.014033 ATTTTCCACCACACCCGGGT 62.014 55.000 24.16 24.16 39.88 5.28
3730 8470 1.228737 ATTTTCCACCACACCCGGG 60.229 57.895 22.25 22.25 0.00 5.73
3731 8471 1.531739 CCATTTTCCACCACACCCGG 61.532 60.000 0.00 0.00 0.00 5.73
3732 8472 1.531739 CCCATTTTCCACCACACCCG 61.532 60.000 0.00 0.00 0.00 5.28
3733 8473 1.826340 GCCCATTTTCCACCACACCC 61.826 60.000 0.00 0.00 0.00 4.61
3734 8474 1.118356 TGCCCATTTTCCACCACACC 61.118 55.000 0.00 0.00 0.00 4.16
3735 8475 0.755686 TTGCCCATTTTCCACCACAC 59.244 50.000 0.00 0.00 0.00 3.82
3736 8476 1.047002 CTTGCCCATTTTCCACCACA 58.953 50.000 0.00 0.00 0.00 4.17
3737 8477 0.321346 CCTTGCCCATTTTCCACCAC 59.679 55.000 0.00 0.00 0.00 4.16
3738 8478 0.835543 CCCTTGCCCATTTTCCACCA 60.836 55.000 0.00 0.00 0.00 4.17
3739 8479 1.982430 CCCTTGCCCATTTTCCACC 59.018 57.895 0.00 0.00 0.00 4.61
3740 8480 1.296392 GCCCTTGCCCATTTTCCAC 59.704 57.895 0.00 0.00 0.00 4.02
3741 8481 3.804490 GCCCTTGCCCATTTTCCA 58.196 55.556 0.00 0.00 0.00 3.53
3774 8514 3.925238 GATACGGCGCGCCACTTG 61.925 66.667 45.26 32.33 35.37 3.16
3775 8515 3.659089 AAGATACGGCGCGCCACTT 62.659 57.895 45.26 35.95 35.37 3.16
3776 8516 4.143333 AAGATACGGCGCGCCACT 62.143 61.111 45.26 33.20 35.37 4.00
3777 8517 3.925238 CAAGATACGGCGCGCCAC 61.925 66.667 45.26 31.72 35.37 5.01
3778 8518 3.439513 ATCAAGATACGGCGCGCCA 62.440 57.895 45.26 30.75 35.37 5.69
3779 8519 2.658707 GATCAAGATACGGCGCGCC 61.659 63.158 39.82 39.82 0.00 6.53
3780 8520 2.658707 GGATCAAGATACGGCGCGC 61.659 63.158 25.94 25.94 0.00 6.86
3781 8521 2.365068 CGGATCAAGATACGGCGCG 61.365 63.158 6.90 0.00 41.29 6.86
3782 8522 3.538841 CGGATCAAGATACGGCGC 58.461 61.111 6.90 0.00 41.29 6.53
3798 8538 0.806102 CTCACTTGCCACCGTATCCG 60.806 60.000 0.00 0.00 0.00 4.18
3799 8539 1.090052 GCTCACTTGCCACCGTATCC 61.090 60.000 0.00 0.00 0.00 2.59
3800 8540 1.421410 CGCTCACTTGCCACCGTATC 61.421 60.000 0.00 0.00 0.00 2.24
3801 8541 1.447838 CGCTCACTTGCCACCGTAT 60.448 57.895 0.00 0.00 0.00 3.06
3802 8542 2.048597 CGCTCACTTGCCACCGTA 60.049 61.111 0.00 0.00 0.00 4.02
3803 8543 3.865929 CTCGCTCACTTGCCACCGT 62.866 63.158 0.00 0.00 0.00 4.83
3804 8544 3.114616 CTCGCTCACTTGCCACCG 61.115 66.667 0.00 0.00 0.00 4.94
3805 8545 2.527951 ATCCTCGCTCACTTGCCACC 62.528 60.000 0.00 0.00 0.00 4.61
3806 8546 1.078848 ATCCTCGCTCACTTGCCAC 60.079 57.895 0.00 0.00 0.00 5.01
3807 8547 1.219124 GATCCTCGCTCACTTGCCA 59.781 57.895 0.00 0.00 0.00 4.92
3808 8548 1.880340 CGATCCTCGCTCACTTGCC 60.880 63.158 0.00 0.00 31.14 4.52
3809 8549 1.880340 CCGATCCTCGCTCACTTGC 60.880 63.158 0.00 0.00 38.82 4.01
3810 8550 1.227089 CCCGATCCTCGCTCACTTG 60.227 63.158 0.00 0.00 38.82 3.16
3811 8551 1.668101 GACCCGATCCTCGCTCACTT 61.668 60.000 0.00 0.00 38.82 3.16
3812 8552 2.043852 ACCCGATCCTCGCTCACT 60.044 61.111 0.00 0.00 38.82 3.41
3813 8553 2.413765 GACCCGATCCTCGCTCAC 59.586 66.667 0.00 0.00 38.82 3.51
3814 8554 3.209812 CGACCCGATCCTCGCTCA 61.210 66.667 0.00 0.00 38.82 4.26
3815 8555 3.183776 GACGACCCGATCCTCGCTC 62.184 68.421 0.00 0.00 38.82 5.03
3816 8556 3.210528 GACGACCCGATCCTCGCT 61.211 66.667 0.00 0.00 38.82 4.93
3817 8557 4.609247 CGACGACCCGATCCTCGC 62.609 72.222 0.00 0.00 38.82 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.