Multiple sequence alignment - TraesCS1B01G039900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G039900 chr1B 100.000 3131 0 0 1 3131 19316344 19313214 0.000000e+00 5782.0
1 TraesCS1B01G039900 chr1B 97.728 2465 53 2 1 2463 19359267 19356804 0.000000e+00 4239.0
2 TraesCS1B01G039900 chr1B 96.888 2474 53 3 1 2463 19494942 19492482 0.000000e+00 4120.0
3 TraesCS1B01G039900 chr1B 97.652 2342 52 2 1 2340 19395832 19393492 0.000000e+00 4017.0
4 TraesCS1B01G039900 chr1B 97.299 1925 43 5 539 2463 19457715 19455800 0.000000e+00 3258.0
5 TraesCS1B01G039900 chr1B 86.536 973 85 23 1 933 165837445 165836479 0.000000e+00 1029.0
6 TraesCS1B01G039900 chr1B 93.050 259 13 3 2878 3131 19355991 19355733 1.060000e-99 374.0
7 TraesCS1B01G039900 chr1B 93.050 259 13 3 2878 3131 19454862 19454604 1.060000e-99 374.0
8 TraesCS1B01G039900 chr1B 92.664 259 14 3 2878 3131 19491544 19491286 4.930000e-98 368.0
9 TraesCS1B01G039900 chr1B 92.278 259 14 4 2878 3131 19392492 19392235 2.300000e-96 363.0
10 TraesCS1B01G039900 chr1D 93.750 2304 118 14 179 2463 13471927 13469631 0.000000e+00 3434.0
11 TraesCS1B01G039900 chr1D 93.050 259 12 4 2878 3131 13455446 13455189 1.060000e-99 374.0
12 TraesCS1B01G039900 chr1D 89.011 91 6 1 1626 1716 13501530 13501444 3.300000e-20 110.0
13 TraesCS1B01G039900 chrUn 98.250 1086 19 0 1284 2369 441543875 441542790 0.000000e+00 1901.0
14 TraesCS1B01G039900 chrUn 85.165 182 27 0 1 182 93446068 93446249 1.480000e-43 187.0
15 TraesCS1B01G039900 chr7D 88.918 767 72 8 179 933 620766144 620766909 0.000000e+00 933.0
16 TraesCS1B01G039900 chr6B 88.845 762 72 10 179 934 297231144 297231898 0.000000e+00 924.0
17 TraesCS1B01G039900 chr7B 88.544 742 72 9 203 933 715837864 715837125 0.000000e+00 887.0
18 TraesCS1B01G039900 chr7B 97.143 35 1 0 179 213 328744792 328744758 3.370000e-05 60.2
19 TraesCS1B01G039900 chr7B 97.143 35 1 0 179 213 740422717 740422683 3.370000e-05 60.2
20 TraesCS1B01G039900 chr2D 82.147 969 107 34 1 933 179832451 179833389 0.000000e+00 771.0
21 TraesCS1B01G039900 chr2D 89.362 47 4 1 2423 2469 420169495 420169450 1.210000e-04 58.4
22 TraesCS1B01G039900 chr1A 84.324 185 24 2 2 181 194119488 194119304 3.210000e-40 176.0
23 TraesCS1B01G039900 chr1A 88.000 50 3 1 2433 2482 438296426 438296472 4.360000e-04 56.5
24 TraesCS1B01G039900 chr5D 82.796 186 24 4 2 181 5914596 5914779 3.230000e-35 159.0
25 TraesCS1B01G039900 chr4B 80.108 186 31 5 3 182 657403795 657403980 1.960000e-27 134.0
26 TraesCS1B01G039900 chr2B 94.872 39 2 0 2429 2467 492619724 492619686 9.380000e-06 62.1
27 TraesCS1B01G039900 chr2A 85.965 57 5 3 2414 2469 570009990 570010044 1.210000e-04 58.4
28 TraesCS1B01G039900 chr3B 96.970 33 1 0 2425 2457 30364639 30364607 4.360000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G039900 chr1B 19313214 19316344 3130 True 5782.0 5782 100.0000 1 3131 1 chr1B.!!$R1 3130
1 TraesCS1B01G039900 chr1B 19355733 19359267 3534 True 2306.5 4239 95.3890 1 3131 2 chr1B.!!$R3 3130
2 TraesCS1B01G039900 chr1B 19491286 19494942 3656 True 2244.0 4120 94.7760 1 3131 2 chr1B.!!$R6 3130
3 TraesCS1B01G039900 chr1B 19392235 19395832 3597 True 2190.0 4017 94.9650 1 3131 2 chr1B.!!$R4 3130
4 TraesCS1B01G039900 chr1B 19454604 19457715 3111 True 1816.0 3258 95.1745 539 3131 2 chr1B.!!$R5 2592
5 TraesCS1B01G039900 chr1B 165836479 165837445 966 True 1029.0 1029 86.5360 1 933 1 chr1B.!!$R2 932
6 TraesCS1B01G039900 chr1D 13469631 13471927 2296 True 3434.0 3434 93.7500 179 2463 1 chr1D.!!$R2 2284
7 TraesCS1B01G039900 chrUn 441542790 441543875 1085 True 1901.0 1901 98.2500 1284 2369 1 chrUn.!!$R1 1085
8 TraesCS1B01G039900 chr7D 620766144 620766909 765 False 933.0 933 88.9180 179 933 1 chr7D.!!$F1 754
9 TraesCS1B01G039900 chr6B 297231144 297231898 754 False 924.0 924 88.8450 179 934 1 chr6B.!!$F1 755
10 TraesCS1B01G039900 chr7B 715837125 715837864 739 True 887.0 887 88.5440 203 933 1 chr7B.!!$R2 730
11 TraesCS1B01G039900 chr2D 179832451 179833389 938 False 771.0 771 82.1470 1 933 1 chr2D.!!$F1 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 142 2.673893 CGAATTCATCCACCACTCGACA 60.674 50.000 6.22 0.0 0.0 4.35 F
657 719 4.311520 AACCCCTAACTAAACCATCCAC 57.688 45.455 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1602 1.342074 TGGGTCAGACCTCAGAAGTG 58.658 55.0 19.57 0.00 38.64 3.16 R
2643 3573 0.035630 GTTGAGGACCTGCATGCTCT 60.036 55.0 20.33 8.36 37.88 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.570488 TCATCATTACCATTTATCATGCTTGAC 58.430 33.333 4.14 0.00 33.85 3.18
117 124 8.821147 ATTTATATGGATACTACGTTTGCGAA 57.179 30.769 0.00 0.00 38.60 4.70
135 142 2.673893 CGAATTCATCCACCACTCGACA 60.674 50.000 6.22 0.00 0.00 4.35
177 184 8.166706 CCTGACAAACAATATGAAGTACGTAAC 58.833 37.037 0.00 0.00 0.00 2.50
233 280 8.584063 TGTATTGACCCCCTTCTTTAAATTAC 57.416 34.615 0.00 0.00 0.00 1.89
391 440 6.349860 CGGTATATGATGTCAGGGATCGTAAA 60.350 42.308 0.00 0.00 0.00 2.01
572 633 6.328714 TCTATATGTAGTAGGTAGCGTCGAG 58.671 44.000 0.00 0.00 0.00 4.04
657 719 4.311520 AACCCCTAACTAAACCATCCAC 57.688 45.455 0.00 0.00 0.00 4.02
1516 1596 8.972458 TCATCCTATCTATCATAGAGCTGTAC 57.028 38.462 0.00 0.00 38.38 2.90
1995 2075 4.081254 AAGGAGTATTACACCTTCGGGTTC 60.081 45.833 16.93 0.00 44.15 3.62
2172 2252 6.591834 AGTCTCCGATACAAAAGATTTGACAG 59.408 38.462 9.62 0.00 0.00 3.51
2394 2475 4.702131 GTCCTGAAGTACAGCCATTTCAAT 59.298 41.667 0.00 0.00 44.52 2.57
2397 2478 6.543465 TCCTGAAGTACAGCCATTTCAATATG 59.457 38.462 0.00 0.00 44.52 1.78
2466 3396 9.374838 CCGTCCCATAATATAAGGTGTTATAAC 57.625 37.037 8.75 8.75 35.24 1.89
2476 3406 9.793259 ATATAAGGTGTTATAACATGGACCAAG 57.207 33.333 20.72 0.00 41.59 3.61
2478 3408 4.291249 AGGTGTTATAACATGGACCAAGGT 59.709 41.667 20.72 0.00 41.59 3.50
2480 3410 5.587443 GGTGTTATAACATGGACCAAGGTAC 59.413 44.000 20.72 3.88 41.59 3.34
2481 3411 6.412214 GTGTTATAACATGGACCAAGGTACT 58.588 40.000 20.72 0.00 40.83 2.73
2483 3413 7.493645 GTGTTATAACATGGACCAAGGTACTAC 59.506 40.741 20.72 0.00 38.70 2.73
2484 3414 3.994931 AACATGGACCAAGGTACTACC 57.005 47.619 0.00 0.00 38.49 3.18
2486 3416 2.104967 CATGGACCAAGGTACTACCGA 58.895 52.381 0.00 0.00 44.90 4.69
2487 3417 2.537633 TGGACCAAGGTACTACCGAT 57.462 50.000 2.65 0.00 44.90 4.18
2488 3418 2.104967 TGGACCAAGGTACTACCGATG 58.895 52.381 2.65 3.80 44.90 3.84
2489 3419 1.202498 GGACCAAGGTACTACCGATGC 60.202 57.143 0.00 0.00 44.90 3.91
2490 3420 1.479323 GACCAAGGTACTACCGATGCA 59.521 52.381 0.00 0.00 44.90 3.96
2491 3421 2.102588 GACCAAGGTACTACCGATGCAT 59.897 50.000 0.00 0.00 44.90 3.96
2492 3422 2.158957 ACCAAGGTACTACCGATGCATG 60.159 50.000 2.46 0.00 44.90 4.06
2493 3423 2.483876 CAAGGTACTACCGATGCATGG 58.516 52.381 2.46 8.85 44.90 3.66
2494 3424 0.393077 AGGTACTACCGATGCATGGC 59.607 55.000 2.46 0.00 44.90 4.40
2495 3425 0.602905 GGTACTACCGATGCATGGCC 60.603 60.000 2.46 0.00 0.00 5.36
2496 3426 0.602905 GTACTACCGATGCATGGCCC 60.603 60.000 2.46 0.00 0.00 5.80
2497 3427 0.762842 TACTACCGATGCATGGCCCT 60.763 55.000 2.46 0.00 0.00 5.19
2498 3428 1.598962 CTACCGATGCATGGCCCTG 60.599 63.158 2.46 0.46 0.00 4.45
2499 3429 2.043604 CTACCGATGCATGGCCCTGA 62.044 60.000 12.80 0.00 0.00 3.86
2500 3430 1.418097 TACCGATGCATGGCCCTGAT 61.418 55.000 12.80 2.62 0.00 2.90
2501 3431 1.529948 CCGATGCATGGCCCTGATT 60.530 57.895 12.80 0.00 0.00 2.57
2502 3432 1.521450 CCGATGCATGGCCCTGATTC 61.521 60.000 12.80 6.41 0.00 2.52
2503 3433 0.536687 CGATGCATGGCCCTGATTCT 60.537 55.000 12.80 0.00 0.00 2.40
2504 3434 1.700955 GATGCATGGCCCTGATTCTT 58.299 50.000 12.80 0.00 0.00 2.52
2505 3435 2.811504 CGATGCATGGCCCTGATTCTTA 60.812 50.000 12.80 0.00 0.00 2.10
2506 3436 3.428532 GATGCATGGCCCTGATTCTTAT 58.571 45.455 12.80 0.00 0.00 1.73
2507 3437 4.592942 GATGCATGGCCCTGATTCTTATA 58.407 43.478 12.80 0.00 0.00 0.98
2508 3438 4.451891 TGCATGGCCCTGATTCTTATAA 57.548 40.909 12.80 0.00 0.00 0.98
2509 3439 4.401022 TGCATGGCCCTGATTCTTATAAG 58.599 43.478 12.80 6.11 0.00 1.73
2510 3440 4.104579 TGCATGGCCCTGATTCTTATAAGA 59.895 41.667 12.80 11.24 0.00 2.10
2511 3441 5.222192 TGCATGGCCCTGATTCTTATAAGAT 60.222 40.000 15.82 6.57 34.49 2.40
2512 3442 6.012596 TGCATGGCCCTGATTCTTATAAGATA 60.013 38.462 15.82 7.72 34.49 1.98
2513 3443 7.059156 GCATGGCCCTGATTCTTATAAGATAT 58.941 38.462 15.82 11.71 34.49 1.63
2514 3444 8.213679 GCATGGCCCTGATTCTTATAAGATATA 58.786 37.037 15.82 1.97 34.49 0.86
2515 3445 9.553064 CATGGCCCTGATTCTTATAAGATATAC 57.447 37.037 15.82 8.40 34.49 1.47
2516 3446 8.679344 TGGCCCTGATTCTTATAAGATATACA 57.321 34.615 15.82 11.84 34.49 2.29
2517 3447 8.762645 TGGCCCTGATTCTTATAAGATATACAG 58.237 37.037 15.82 18.44 34.49 2.74
2518 3448 8.207545 GGCCCTGATTCTTATAAGATATACAGG 58.792 40.741 27.91 27.91 40.23 4.00
2519 3449 8.982723 GCCCTGATTCTTATAAGATATACAGGA 58.017 37.037 31.63 15.49 42.22 3.86
2533 3463 8.644374 AGATATACAGGATTCAGAGAACTACC 57.356 38.462 0.00 0.00 0.00 3.18
2534 3464 5.776173 ATACAGGATTCAGAGAACTACCG 57.224 43.478 0.00 0.00 0.00 4.02
2535 3465 2.166664 ACAGGATTCAGAGAACTACCGC 59.833 50.000 0.00 0.00 0.00 5.68
2536 3466 2.166459 CAGGATTCAGAGAACTACCGCA 59.834 50.000 0.00 0.00 0.00 5.69
2537 3467 3.034635 AGGATTCAGAGAACTACCGCAT 58.965 45.455 0.00 0.00 0.00 4.73
2538 3468 4.038042 CAGGATTCAGAGAACTACCGCATA 59.962 45.833 0.00 0.00 0.00 3.14
2539 3469 4.835615 AGGATTCAGAGAACTACCGCATAT 59.164 41.667 0.00 0.00 0.00 1.78
2540 3470 5.047660 AGGATTCAGAGAACTACCGCATATC 60.048 44.000 0.00 0.00 0.00 1.63
2541 3471 5.279006 GGATTCAGAGAACTACCGCATATCA 60.279 44.000 0.00 0.00 0.00 2.15
2542 3472 5.791336 TTCAGAGAACTACCGCATATCAT 57.209 39.130 0.00 0.00 0.00 2.45
2543 3473 5.791336 TCAGAGAACTACCGCATATCATT 57.209 39.130 0.00 0.00 0.00 2.57
2544 3474 6.894339 TCAGAGAACTACCGCATATCATTA 57.106 37.500 0.00 0.00 0.00 1.90
2545 3475 7.468141 TCAGAGAACTACCGCATATCATTAT 57.532 36.000 0.00 0.00 0.00 1.28
2546 3476 7.896811 TCAGAGAACTACCGCATATCATTATT 58.103 34.615 0.00 0.00 0.00 1.40
2547 3477 7.814587 TCAGAGAACTACCGCATATCATTATTG 59.185 37.037 0.00 0.00 0.00 1.90
2548 3478 7.814587 CAGAGAACTACCGCATATCATTATTGA 59.185 37.037 0.00 0.00 36.00 2.57
2549 3479 8.367911 AGAGAACTACCGCATATCATTATTGAA 58.632 33.333 0.00 0.00 34.96 2.69
2550 3480 8.902540 AGAACTACCGCATATCATTATTGAAA 57.097 30.769 0.00 0.00 34.96 2.69
2551 3481 8.774586 AGAACTACCGCATATCATTATTGAAAC 58.225 33.333 0.00 0.00 34.96 2.78
2552 3482 8.445275 AACTACCGCATATCATTATTGAAACA 57.555 30.769 0.00 0.00 34.96 2.83
2553 3483 8.621532 ACTACCGCATATCATTATTGAAACAT 57.378 30.769 0.00 0.00 34.96 2.71
2554 3484 8.721478 ACTACCGCATATCATTATTGAAACATC 58.279 33.333 0.00 0.00 34.96 3.06
2555 3485 7.750229 ACCGCATATCATTATTGAAACATCT 57.250 32.000 0.00 0.00 34.96 2.90
2556 3486 8.846943 ACCGCATATCATTATTGAAACATCTA 57.153 30.769 0.00 0.00 34.96 1.98
2557 3487 8.939929 ACCGCATATCATTATTGAAACATCTAG 58.060 33.333 0.00 0.00 34.96 2.43
2558 3488 7.907045 CCGCATATCATTATTGAAACATCTAGC 59.093 37.037 0.00 0.00 34.96 3.42
2559 3489 7.907045 CGCATATCATTATTGAAACATCTAGCC 59.093 37.037 0.00 0.00 34.96 3.93
2560 3490 8.733458 GCATATCATTATTGAAACATCTAGCCA 58.267 33.333 0.00 0.00 34.96 4.75
2563 3493 8.985315 ATCATTATTGAAACATCTAGCCAAGA 57.015 30.769 0.00 0.00 35.31 3.02
2564 3494 8.213518 TCATTATTGAAACATCTAGCCAAGAC 57.786 34.615 0.00 0.00 36.93 3.01
2565 3495 7.283127 TCATTATTGAAACATCTAGCCAAGACC 59.717 37.037 0.00 0.00 36.93 3.85
2566 3496 4.365514 TTGAAACATCTAGCCAAGACCA 57.634 40.909 0.00 0.00 36.93 4.02
2567 3497 4.365514 TGAAACATCTAGCCAAGACCAA 57.634 40.909 0.00 0.00 36.93 3.67
2568 3498 4.724399 TGAAACATCTAGCCAAGACCAAA 58.276 39.130 0.00 0.00 36.93 3.28
2569 3499 4.518970 TGAAACATCTAGCCAAGACCAAAC 59.481 41.667 0.00 0.00 36.93 2.93
2570 3500 4.373156 AACATCTAGCCAAGACCAAACT 57.627 40.909 0.00 0.00 36.93 2.66
2571 3501 4.373156 ACATCTAGCCAAGACCAAACTT 57.627 40.909 0.00 0.00 36.93 2.66
2572 3502 4.327680 ACATCTAGCCAAGACCAAACTTC 58.672 43.478 0.00 0.00 36.93 3.01
2573 3503 4.202461 ACATCTAGCCAAGACCAAACTTCA 60.202 41.667 0.00 0.00 36.93 3.02
2574 3504 4.008074 TCTAGCCAAGACCAAACTTCAG 57.992 45.455 0.00 0.00 0.00 3.02
2575 3505 3.646162 TCTAGCCAAGACCAAACTTCAGA 59.354 43.478 0.00 0.00 0.00 3.27
2576 3506 2.856222 AGCCAAGACCAAACTTCAGAG 58.144 47.619 0.00 0.00 0.00 3.35
2577 3507 2.439507 AGCCAAGACCAAACTTCAGAGA 59.560 45.455 0.00 0.00 0.00 3.10
2578 3508 3.117888 AGCCAAGACCAAACTTCAGAGAA 60.118 43.478 0.00 0.00 0.00 2.87
2579 3509 3.003793 GCCAAGACCAAACTTCAGAGAAC 59.996 47.826 0.00 0.00 0.00 3.01
2580 3510 4.455606 CCAAGACCAAACTTCAGAGAACT 58.544 43.478 0.00 0.00 0.00 3.01
2581 3511 4.274459 CCAAGACCAAACTTCAGAGAACTG 59.726 45.833 0.00 0.00 44.66 3.16
2582 3512 3.471680 AGACCAAACTTCAGAGAACTGC 58.528 45.455 0.00 0.00 43.17 4.40
2583 3513 3.135530 AGACCAAACTTCAGAGAACTGCT 59.864 43.478 0.00 0.00 43.17 4.24
2584 3514 3.879892 GACCAAACTTCAGAGAACTGCTT 59.120 43.478 0.00 0.00 43.17 3.91
2585 3515 3.629398 ACCAAACTTCAGAGAACTGCTTG 59.371 43.478 0.00 0.00 43.17 4.01
2586 3516 3.879295 CCAAACTTCAGAGAACTGCTTGA 59.121 43.478 0.00 0.00 43.17 3.02
2587 3517 4.260948 CCAAACTTCAGAGAACTGCTTGAC 60.261 45.833 0.00 0.00 43.17 3.18
2588 3518 3.827008 ACTTCAGAGAACTGCTTGACA 57.173 42.857 0.00 0.00 43.17 3.58
2589 3519 4.142609 ACTTCAGAGAACTGCTTGACAA 57.857 40.909 0.00 0.00 43.17 3.18
2590 3520 4.125703 ACTTCAGAGAACTGCTTGACAAG 58.874 43.478 11.02 11.02 43.17 3.16
2591 3521 3.117491 TCAGAGAACTGCTTGACAAGG 57.883 47.619 16.80 3.79 43.17 3.61
2592 3522 2.149578 CAGAGAACTGCTTGACAAGGG 58.850 52.381 16.80 0.00 37.33 3.95
2593 3523 2.050144 AGAGAACTGCTTGACAAGGGA 58.950 47.619 16.80 0.00 0.00 4.20
2594 3524 2.439507 AGAGAACTGCTTGACAAGGGAA 59.560 45.455 16.80 0.00 0.00 3.97
2595 3525 3.117888 AGAGAACTGCTTGACAAGGGAAA 60.118 43.478 16.80 0.00 0.00 3.13
2596 3526 3.823304 GAGAACTGCTTGACAAGGGAAAT 59.177 43.478 16.80 0.00 0.00 2.17
2597 3527 3.571401 AGAACTGCTTGACAAGGGAAATG 59.429 43.478 16.80 0.00 0.00 2.32
2598 3528 1.615392 ACTGCTTGACAAGGGAAATGC 59.385 47.619 16.80 2.04 0.00 3.56
2599 3529 1.891150 CTGCTTGACAAGGGAAATGCT 59.109 47.619 16.80 0.00 0.00 3.79
2600 3530 2.298163 CTGCTTGACAAGGGAAATGCTT 59.702 45.455 16.80 0.00 0.00 3.91
2601 3531 2.297033 TGCTTGACAAGGGAAATGCTTC 59.703 45.455 16.80 0.00 0.00 3.86
2602 3532 2.297033 GCTTGACAAGGGAAATGCTTCA 59.703 45.455 16.80 0.00 32.75 3.02
2603 3533 3.858503 GCTTGACAAGGGAAATGCTTCAC 60.859 47.826 16.80 0.00 34.93 3.18
2604 3534 2.238521 TGACAAGGGAAATGCTTCACC 58.761 47.619 0.00 0.00 35.34 4.02
2605 3535 2.238521 GACAAGGGAAATGCTTCACCA 58.761 47.619 0.00 0.00 35.34 4.17
2606 3536 2.827921 GACAAGGGAAATGCTTCACCAT 59.172 45.455 0.00 0.00 35.34 3.55
2607 3537 2.564062 ACAAGGGAAATGCTTCACCATG 59.436 45.455 0.00 0.00 35.34 3.66
2608 3538 2.827322 CAAGGGAAATGCTTCACCATGA 59.173 45.455 0.00 0.00 35.34 3.07
2609 3539 2.450476 AGGGAAATGCTTCACCATGAC 58.550 47.619 0.00 0.00 35.34 3.06
2610 3540 2.170166 GGGAAATGCTTCACCATGACA 58.830 47.619 0.00 0.00 32.75 3.58
2611 3541 2.762327 GGGAAATGCTTCACCATGACAT 59.238 45.455 0.00 0.00 32.75 3.06
2612 3542 3.196254 GGGAAATGCTTCACCATGACATT 59.804 43.478 0.00 0.00 32.75 2.71
2613 3543 4.178540 GGAAATGCTTCACCATGACATTG 58.821 43.478 0.00 0.00 32.75 2.82
2614 3544 4.082081 GGAAATGCTTCACCATGACATTGA 60.082 41.667 0.00 0.00 32.75 2.57
2615 3545 4.713824 AATGCTTCACCATGACATTGAG 57.286 40.909 0.00 0.00 26.70 3.02
2616 3546 3.421919 TGCTTCACCATGACATTGAGA 57.578 42.857 0.00 0.00 0.00 3.27
2617 3547 3.753815 TGCTTCACCATGACATTGAGAA 58.246 40.909 0.00 0.00 0.00 2.87
2618 3548 4.143543 TGCTTCACCATGACATTGAGAAA 58.856 39.130 0.00 0.00 0.00 2.52
2619 3549 4.768448 TGCTTCACCATGACATTGAGAAAT 59.232 37.500 0.00 0.00 0.00 2.17
2620 3550 5.100259 GCTTCACCATGACATTGAGAAATG 58.900 41.667 0.00 0.00 36.29 2.32
2621 3551 5.647589 CTTCACCATGACATTGAGAAATGG 58.352 41.667 0.00 0.00 42.88 3.16
2623 3553 4.701651 TCACCATGACATTGAGAAATGGTC 59.298 41.667 2.70 0.00 46.25 4.02
2624 3554 4.460034 CACCATGACATTGAGAAATGGTCA 59.540 41.667 2.70 0.00 46.25 4.02
2625 3555 4.703575 ACCATGACATTGAGAAATGGTCAG 59.296 41.667 0.00 0.00 46.25 3.51
2626 3556 4.439700 CCATGACATTGAGAAATGGTCAGC 60.440 45.833 0.00 0.00 34.35 4.26
2627 3557 3.084039 TGACATTGAGAAATGGTCAGCC 58.916 45.455 3.70 0.00 34.56 4.85
2628 3558 2.086869 ACATTGAGAAATGGTCAGCCG 58.913 47.619 3.70 0.00 37.67 5.52
2629 3559 2.086869 CATTGAGAAATGGTCAGCCGT 58.913 47.619 0.00 0.00 37.67 5.68
2630 3560 1.522668 TTGAGAAATGGTCAGCCGTG 58.477 50.000 0.00 0.00 37.67 4.94
2631 3561 0.684535 TGAGAAATGGTCAGCCGTGA 59.315 50.000 0.00 0.00 37.67 4.35
2632 3562 1.338105 TGAGAAATGGTCAGCCGTGAG 60.338 52.381 0.00 0.00 37.67 3.51
2643 3573 2.664851 CCGTGAGCGCCTGACAAA 60.665 61.111 2.29 0.00 36.67 2.83
2644 3574 2.671177 CCGTGAGCGCCTGACAAAG 61.671 63.158 2.29 0.00 36.67 2.77
2645 3575 1.664649 CGTGAGCGCCTGACAAAGA 60.665 57.895 2.29 0.00 0.00 2.52
2646 3576 1.621301 CGTGAGCGCCTGACAAAGAG 61.621 60.000 2.29 0.00 0.00 2.85
2647 3577 1.669115 TGAGCGCCTGACAAAGAGC 60.669 57.895 2.29 0.00 0.00 4.09
2648 3578 1.669115 GAGCGCCTGACAAAGAGCA 60.669 57.895 2.29 0.00 33.50 4.26
2649 3579 1.002868 AGCGCCTGACAAAGAGCAT 60.003 52.632 2.29 0.00 33.50 3.79
2650 3580 1.136147 GCGCCTGACAAAGAGCATG 59.864 57.895 0.00 0.00 32.02 4.06
2651 3581 1.136147 CGCCTGACAAAGAGCATGC 59.864 57.895 10.51 10.51 0.00 4.06
2652 3582 1.579964 CGCCTGACAAAGAGCATGCA 61.580 55.000 21.98 0.00 0.00 3.96
2653 3583 0.170561 GCCTGACAAAGAGCATGCAG 59.829 55.000 21.98 5.40 0.00 4.41
2654 3584 0.809385 CCTGACAAAGAGCATGCAGG 59.191 55.000 21.98 11.28 36.49 4.85
2655 3585 1.531423 CTGACAAAGAGCATGCAGGT 58.469 50.000 21.98 9.85 0.00 4.00
2656 3586 1.467734 CTGACAAAGAGCATGCAGGTC 59.532 52.381 21.98 18.01 45.07 3.85
2657 3587 0.807496 GACAAAGAGCATGCAGGTCC 59.193 55.000 21.98 3.25 45.87 4.46
2658 3588 0.403271 ACAAAGAGCATGCAGGTCCT 59.597 50.000 21.98 5.64 45.87 3.85
2659 3589 1.093159 CAAAGAGCATGCAGGTCCTC 58.907 55.000 21.98 7.40 45.87 3.71
2660 3590 0.694771 AAAGAGCATGCAGGTCCTCA 59.305 50.000 21.98 0.00 45.87 3.86
2661 3591 0.694771 AAGAGCATGCAGGTCCTCAA 59.305 50.000 21.98 0.00 45.87 3.02
2662 3592 0.035630 AGAGCATGCAGGTCCTCAAC 60.036 55.000 21.98 0.00 45.87 3.18
2672 3602 1.670791 GGTCCTCAACCGTTCAAACA 58.329 50.000 0.00 0.00 38.58 2.83
2673 3603 1.602377 GGTCCTCAACCGTTCAAACAG 59.398 52.381 0.00 0.00 38.58 3.16
2674 3604 1.602377 GTCCTCAACCGTTCAAACAGG 59.398 52.381 0.00 0.00 0.00 4.00
2675 3605 1.210967 TCCTCAACCGTTCAAACAGGT 59.789 47.619 4.34 4.34 37.39 4.00
2676 3606 2.021457 CCTCAACCGTTCAAACAGGTT 58.979 47.619 12.96 12.96 42.31 3.50
2677 3607 2.032924 CCTCAACCGTTCAAACAGGTTC 59.967 50.000 14.77 0.00 40.86 3.62
2678 3608 2.018515 TCAACCGTTCAAACAGGTTCC 58.981 47.619 14.77 0.00 40.86 3.62
2679 3609 1.746220 CAACCGTTCAAACAGGTTCCA 59.254 47.619 14.77 0.00 40.86 3.53
2680 3610 1.675552 ACCGTTCAAACAGGTTCCAG 58.324 50.000 4.34 0.00 33.99 3.86
2681 3611 1.210967 ACCGTTCAAACAGGTTCCAGA 59.789 47.619 4.34 0.00 33.99 3.86
2682 3612 1.602377 CCGTTCAAACAGGTTCCAGAC 59.398 52.381 0.00 0.00 0.00 3.51
2683 3613 1.260561 CGTTCAAACAGGTTCCAGACG 59.739 52.381 0.00 0.00 0.00 4.18
2684 3614 1.602377 GTTCAAACAGGTTCCAGACGG 59.398 52.381 0.00 0.00 0.00 4.79
2685 3615 1.124780 TCAAACAGGTTCCAGACGGA 58.875 50.000 0.00 0.00 40.60 4.69
2686 3616 1.697432 TCAAACAGGTTCCAGACGGAT 59.303 47.619 0.00 0.00 42.41 4.18
2687 3617 2.105821 TCAAACAGGTTCCAGACGGATT 59.894 45.455 0.00 0.00 42.41 3.01
2688 3618 2.185004 AACAGGTTCCAGACGGATTG 57.815 50.000 0.00 0.00 42.41 2.67
2689 3619 0.321653 ACAGGTTCCAGACGGATTGC 60.322 55.000 0.00 0.00 42.41 3.56
2690 3620 0.321564 CAGGTTCCAGACGGATTGCA 60.322 55.000 0.00 0.00 42.41 4.08
2691 3621 0.036010 AGGTTCCAGACGGATTGCAG 60.036 55.000 0.00 0.00 42.41 4.41
2692 3622 1.648467 GGTTCCAGACGGATTGCAGC 61.648 60.000 0.00 0.00 42.41 5.25
2693 3623 0.674895 GTTCCAGACGGATTGCAGCT 60.675 55.000 0.00 0.00 42.41 4.24
2694 3624 0.674581 TTCCAGACGGATTGCAGCTG 60.675 55.000 10.11 10.11 42.41 4.24
2695 3625 2.110967 CCAGACGGATTGCAGCTGG 61.111 63.158 17.12 0.00 40.03 4.85
2696 3626 1.078918 CAGACGGATTGCAGCTGGA 60.079 57.895 17.12 10.66 0.00 3.86
2697 3627 1.088340 CAGACGGATTGCAGCTGGAG 61.088 60.000 17.12 2.94 0.00 3.86
2698 3628 1.078848 GACGGATTGCAGCTGGAGT 60.079 57.895 17.12 9.93 0.00 3.85
2699 3629 0.674895 GACGGATTGCAGCTGGAGTT 60.675 55.000 17.12 3.94 0.00 3.01
2700 3630 0.674895 ACGGATTGCAGCTGGAGTTC 60.675 55.000 17.12 13.22 0.00 3.01
2701 3631 0.392193 CGGATTGCAGCTGGAGTTCT 60.392 55.000 17.12 0.00 0.00 3.01
2702 3632 1.093159 GGATTGCAGCTGGAGTTCTG 58.907 55.000 17.12 0.00 0.00 3.02
2706 3636 4.785767 CAGCTGGAGTTCTGCACA 57.214 55.556 5.57 0.00 41.96 4.57
2707 3637 3.011085 CAGCTGGAGTTCTGCACAA 57.989 52.632 5.57 0.00 41.96 3.33
2708 3638 0.590195 CAGCTGGAGTTCTGCACAAC 59.410 55.000 5.57 0.00 41.96 3.32
2709 3639 0.471617 AGCTGGAGTTCTGCACAACT 59.528 50.000 7.11 7.11 41.96 3.16
2710 3640 0.590195 GCTGGAGTTCTGCACAACTG 59.410 55.000 12.42 0.00 36.71 3.16
2711 3641 1.811558 GCTGGAGTTCTGCACAACTGA 60.812 52.381 12.42 0.00 36.71 3.41
2712 3642 2.564771 CTGGAGTTCTGCACAACTGAA 58.435 47.619 12.42 0.00 36.71 3.02
2720 3650 4.818534 TCTGCACAACTGAACAAAGATC 57.181 40.909 0.00 0.00 0.00 2.75
2721 3651 4.198530 TCTGCACAACTGAACAAAGATCA 58.801 39.130 0.00 0.00 0.00 2.92
2722 3652 4.823442 TCTGCACAACTGAACAAAGATCAT 59.177 37.500 0.00 0.00 0.00 2.45
2723 3653 4.862350 TGCACAACTGAACAAAGATCATG 58.138 39.130 0.00 0.00 0.00 3.07
2724 3654 4.579753 TGCACAACTGAACAAAGATCATGA 59.420 37.500 0.00 0.00 0.00 3.07
2725 3655 5.067544 TGCACAACTGAACAAAGATCATGAA 59.932 36.000 0.00 0.00 0.00 2.57
2726 3656 6.154445 GCACAACTGAACAAAGATCATGAAT 58.846 36.000 0.00 0.00 0.00 2.57
2733 3663 2.684881 ACAAAGATCATGAATGGCGACC 59.315 45.455 0.00 0.00 0.00 4.79
2740 3670 3.819368 TCATGAATGGCGACCATACATT 58.181 40.909 11.07 0.00 44.40 2.71
2742 3672 4.644234 TCATGAATGGCGACCATACATTTT 59.356 37.500 11.07 0.00 44.40 1.82
2744 3674 6.489700 TCATGAATGGCGACCATACATTTTAT 59.510 34.615 11.07 0.00 44.40 1.40
2746 3676 6.734137 TGAATGGCGACCATACATTTTATTC 58.266 36.000 11.07 4.62 44.40 1.75
2747 3677 6.319911 TGAATGGCGACCATACATTTTATTCA 59.680 34.615 11.07 6.70 44.40 2.57
2748 3678 5.493133 TGGCGACCATACATTTTATTCAC 57.507 39.130 0.00 0.00 0.00 3.18
2749 3679 4.944317 TGGCGACCATACATTTTATTCACA 59.056 37.500 0.00 0.00 0.00 3.58
2750 3680 5.592282 TGGCGACCATACATTTTATTCACAT 59.408 36.000 0.00 0.00 0.00 3.21
2751 3681 6.142817 GGCGACCATACATTTTATTCACATC 58.857 40.000 0.00 0.00 0.00 3.06
2752 3682 6.017109 GGCGACCATACATTTTATTCACATCT 60.017 38.462 0.00 0.00 0.00 2.90
2755 3685 9.040939 CGACCATACATTTTATTCACATCTACA 57.959 33.333 0.00 0.00 0.00 2.74
2757 3687 9.905713 ACCATACATTTTATTCACATCTACAGT 57.094 29.630 0.00 0.00 0.00 3.55
2762 3692 9.905713 ACATTTTATTCACATCTACAGTACCAT 57.094 29.630 0.00 0.00 0.00 3.55
2768 3698 8.948631 ATTCACATCTACAGTACCATACAAAG 57.051 34.615 0.00 0.00 0.00 2.77
2769 3699 7.712204 TCACATCTACAGTACCATACAAAGA 57.288 36.000 0.00 0.00 0.00 2.52
2771 3701 8.251026 TCACATCTACAGTACCATACAAAGAAG 58.749 37.037 0.00 0.00 0.00 2.85
2772 3702 8.035394 CACATCTACAGTACCATACAAAGAAGT 58.965 37.037 0.00 0.00 0.00 3.01
2773 3703 9.251440 ACATCTACAGTACCATACAAAGAAGTA 57.749 33.333 0.00 0.00 0.00 2.24
2776 3706 9.175312 TCTACAGTACCATACAAAGAAGTAGAG 57.825 37.037 0.00 0.00 32.82 2.43
2777 3707 7.171630 ACAGTACCATACAAAGAAGTAGAGG 57.828 40.000 0.00 0.00 32.45 3.69
2778 3708 6.043411 CAGTACCATACAAAGAAGTAGAGGC 58.957 44.000 0.00 0.00 30.46 4.70
2779 3709 4.124851 ACCATACAAAGAAGTAGAGGCG 57.875 45.455 0.00 0.00 30.46 5.52
2780 3710 2.866762 CCATACAAAGAAGTAGAGGCGC 59.133 50.000 0.00 0.00 0.00 6.53
2783 3713 1.618837 ACAAAGAAGTAGAGGCGCAGA 59.381 47.619 10.83 0.00 0.00 4.26
2784 3714 2.266554 CAAAGAAGTAGAGGCGCAGAG 58.733 52.381 10.83 0.00 0.00 3.35
2795 3725 2.104928 CGCAGAGCCGAGCACATA 59.895 61.111 0.00 0.00 0.00 2.29
2796 3726 1.948138 CGCAGAGCCGAGCACATAG 60.948 63.158 0.00 0.00 0.00 2.23
2797 3727 1.593750 GCAGAGCCGAGCACATAGG 60.594 63.158 0.00 0.00 0.00 2.57
2802 3732 4.615901 CCGAGCACATAGGCAACA 57.384 55.556 0.00 0.00 41.41 3.33
2803 3733 3.085208 CCGAGCACATAGGCAACAT 57.915 52.632 0.00 0.00 41.41 2.71
2804 3734 2.238942 CCGAGCACATAGGCAACATA 57.761 50.000 0.00 0.00 41.41 2.29
2805 3735 2.138320 CCGAGCACATAGGCAACATAG 58.862 52.381 0.00 0.00 41.41 2.23
2806 3736 2.483714 CCGAGCACATAGGCAACATAGT 60.484 50.000 0.00 0.00 41.41 2.12
2807 3737 3.243737 CCGAGCACATAGGCAACATAGTA 60.244 47.826 0.00 0.00 41.41 1.82
2808 3738 3.983988 CGAGCACATAGGCAACATAGTAG 59.016 47.826 0.00 0.00 41.41 2.57
2809 3739 4.261614 CGAGCACATAGGCAACATAGTAGA 60.262 45.833 0.00 0.00 41.41 2.59
2810 3740 5.601662 GAGCACATAGGCAACATAGTAGAA 58.398 41.667 0.00 0.00 41.41 2.10
2811 3741 5.989477 AGCACATAGGCAACATAGTAGAAA 58.011 37.500 0.00 0.00 41.41 2.52
2812 3742 5.817816 AGCACATAGGCAACATAGTAGAAAC 59.182 40.000 0.00 0.00 41.41 2.78
2813 3743 5.817816 GCACATAGGCAACATAGTAGAAACT 59.182 40.000 0.00 0.00 38.46 2.66
2814 3744 6.316390 GCACATAGGCAACATAGTAGAAACTT 59.684 38.462 0.00 0.00 36.56 2.66
2815 3745 7.148239 GCACATAGGCAACATAGTAGAAACTTT 60.148 37.037 0.00 0.00 36.56 2.66
2816 3746 9.378551 CACATAGGCAACATAGTAGAAACTTTA 57.621 33.333 0.00 0.00 36.56 1.85
2817 3747 9.379791 ACATAGGCAACATAGTAGAAACTTTAC 57.620 33.333 0.00 0.00 36.56 2.01
2818 3748 9.601217 CATAGGCAACATAGTAGAAACTTTACT 57.399 33.333 0.00 0.00 36.56 2.24
2819 3749 9.819267 ATAGGCAACATAGTAGAAACTTTACTC 57.181 33.333 0.00 0.00 36.56 2.59
2820 3750 7.676947 AGGCAACATAGTAGAAACTTTACTCA 58.323 34.615 0.00 0.00 36.56 3.41
2821 3751 7.819900 AGGCAACATAGTAGAAACTTTACTCAG 59.180 37.037 0.00 0.00 36.56 3.35
2822 3752 7.603024 GGCAACATAGTAGAAACTTTACTCAGT 59.397 37.037 0.00 0.00 37.15 3.41
2823 3753 8.989980 GCAACATAGTAGAAACTTTACTCAGTT 58.010 33.333 0.00 0.00 38.74 3.16
2837 3767 8.919145 ACTTTACTCAGTTAGATATCCTCAAGG 58.081 37.037 0.00 0.00 0.00 3.61
2838 3768 8.840200 TTTACTCAGTTAGATATCCTCAAGGT 57.160 34.615 0.00 0.00 36.34 3.50
2839 3769 6.723298 ACTCAGTTAGATATCCTCAAGGTG 57.277 41.667 0.00 0.00 36.34 4.00
2840 3770 6.436027 ACTCAGTTAGATATCCTCAAGGTGA 58.564 40.000 0.00 0.00 36.34 4.02
2841 3771 7.072562 ACTCAGTTAGATATCCTCAAGGTGAT 58.927 38.462 0.00 0.00 36.34 3.06
2842 3772 7.015098 ACTCAGTTAGATATCCTCAAGGTGATG 59.985 40.741 0.00 0.00 36.34 3.07
2843 3773 5.931146 CAGTTAGATATCCTCAAGGTGATGC 59.069 44.000 0.00 0.00 36.34 3.91
2844 3774 3.674528 AGATATCCTCAAGGTGATGCG 57.325 47.619 0.00 0.00 36.34 4.73
2845 3775 3.234353 AGATATCCTCAAGGTGATGCGA 58.766 45.455 0.00 0.00 36.34 5.10
2846 3776 3.643320 AGATATCCTCAAGGTGATGCGAA 59.357 43.478 0.00 0.00 36.34 4.70
2847 3777 2.029838 ATCCTCAAGGTGATGCGAAC 57.970 50.000 0.00 0.00 36.34 3.95
2848 3778 0.976641 TCCTCAAGGTGATGCGAACT 59.023 50.000 0.00 0.00 36.34 3.01
2849 3779 2.176045 TCCTCAAGGTGATGCGAACTA 58.824 47.619 0.00 0.00 36.34 2.24
2850 3780 2.166459 TCCTCAAGGTGATGCGAACTAG 59.834 50.000 0.00 0.00 36.34 2.57
2851 3781 1.929836 CTCAAGGTGATGCGAACTAGC 59.070 52.381 0.00 0.00 37.71 3.42
2852 3782 1.550524 TCAAGGTGATGCGAACTAGCT 59.449 47.619 0.00 0.00 38.13 3.32
2853 3783 2.028112 TCAAGGTGATGCGAACTAGCTT 60.028 45.455 0.00 0.00 38.13 3.74
2854 3784 2.015736 AGGTGATGCGAACTAGCTTG 57.984 50.000 0.00 0.00 38.13 4.01
2855 3785 1.276421 AGGTGATGCGAACTAGCTTGT 59.724 47.619 0.00 0.00 38.13 3.16
2856 3786 2.496070 AGGTGATGCGAACTAGCTTGTA 59.504 45.455 0.00 0.00 38.13 2.41
2857 3787 3.133003 AGGTGATGCGAACTAGCTTGTAT 59.867 43.478 0.00 0.00 38.13 2.29
2858 3788 3.871594 GGTGATGCGAACTAGCTTGTATT 59.128 43.478 0.00 0.00 38.13 1.89
2859 3789 4.260375 GGTGATGCGAACTAGCTTGTATTG 60.260 45.833 0.00 0.00 38.13 1.90
2860 3790 4.566759 GTGATGCGAACTAGCTTGTATTGA 59.433 41.667 0.00 0.00 38.13 2.57
2861 3791 4.805719 TGATGCGAACTAGCTTGTATTGAG 59.194 41.667 0.00 0.00 38.13 3.02
2862 3792 4.188247 TGCGAACTAGCTTGTATTGAGT 57.812 40.909 0.00 0.00 38.13 3.41
2863 3793 3.926527 TGCGAACTAGCTTGTATTGAGTG 59.073 43.478 0.00 0.00 38.13 3.51
2864 3794 3.242123 GCGAACTAGCTTGTATTGAGTGC 60.242 47.826 0.00 0.00 0.00 4.40
2865 3795 3.307242 CGAACTAGCTTGTATTGAGTGCC 59.693 47.826 0.00 0.00 0.00 5.01
2866 3796 4.508662 GAACTAGCTTGTATTGAGTGCCT 58.491 43.478 0.00 0.00 0.00 4.75
2867 3797 4.559862 ACTAGCTTGTATTGAGTGCCTT 57.440 40.909 0.00 0.00 0.00 4.35
2868 3798 4.508662 ACTAGCTTGTATTGAGTGCCTTC 58.491 43.478 0.00 0.00 0.00 3.46
2869 3799 2.716217 AGCTTGTATTGAGTGCCTTCC 58.284 47.619 0.00 0.00 0.00 3.46
2870 3800 1.745653 GCTTGTATTGAGTGCCTTCCC 59.254 52.381 0.00 0.00 0.00 3.97
2871 3801 2.879756 GCTTGTATTGAGTGCCTTCCCA 60.880 50.000 0.00 0.00 0.00 4.37
2872 3802 3.420893 CTTGTATTGAGTGCCTTCCCAA 58.579 45.455 0.00 0.00 0.00 4.12
2873 3803 3.071874 TGTATTGAGTGCCTTCCCAAG 57.928 47.619 0.00 0.00 0.00 3.61
2874 3804 2.375174 TGTATTGAGTGCCTTCCCAAGT 59.625 45.455 0.00 0.00 0.00 3.16
2875 3805 2.206576 ATTGAGTGCCTTCCCAAGTC 57.793 50.000 0.00 0.00 0.00 3.01
2876 3806 1.140312 TTGAGTGCCTTCCCAAGTCT 58.860 50.000 0.00 0.00 0.00 3.24
2877 3807 1.140312 TGAGTGCCTTCCCAAGTCTT 58.860 50.000 0.00 0.00 0.00 3.01
2878 3808 1.072331 TGAGTGCCTTCCCAAGTCTTC 59.928 52.381 0.00 0.00 0.00 2.87
2879 3809 1.349357 GAGTGCCTTCCCAAGTCTTCT 59.651 52.381 0.00 0.00 0.00 2.85
2880 3810 2.567615 GAGTGCCTTCCCAAGTCTTCTA 59.432 50.000 0.00 0.00 0.00 2.10
2881 3811 3.185455 AGTGCCTTCCCAAGTCTTCTAT 58.815 45.455 0.00 0.00 0.00 1.98
2882 3812 4.362677 AGTGCCTTCCCAAGTCTTCTATA 58.637 43.478 0.00 0.00 0.00 1.31
2908 3838 6.018589 TCCTAAGCATCATTACTCGATCTG 57.981 41.667 0.00 0.00 0.00 2.90
2925 3855 6.925211 TCGATCTGTCACCTGAATAATATCC 58.075 40.000 0.00 0.00 0.00 2.59
2944 3874 1.154205 CGGCCGTTCTTCCATAGCTG 61.154 60.000 19.50 0.00 0.00 4.24
2949 3879 2.289002 CCGTTCTTCCATAGCTGCATTC 59.711 50.000 1.02 0.00 0.00 2.67
3066 4001 6.213677 TGTATTGCATAGTGGACGAATAGAC 58.786 40.000 0.00 0.00 0.00 2.59
3067 4002 3.349488 TGCATAGTGGACGAATAGACG 57.651 47.619 0.00 0.00 39.31 4.18
3080 4015 3.612423 CGAATAGACGCACATGAAGACAA 59.388 43.478 0.00 0.00 0.00 3.18
3092 4027 6.697019 GCACATGAAGACAACTTTTAACACAT 59.303 34.615 0.00 0.00 36.39 3.21
3118 4053 1.270199 ACATCTGGCAGAGATCGATGC 60.270 52.381 23.24 14.65 39.64 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 124 2.768527 AGATGTCGAGTGGTGGATGAAT 59.231 45.455 0.00 0.00 0.00 2.57
135 142 3.978164 GGGTAGCCCTGCTCAGAT 58.022 61.111 0.00 0.00 41.34 2.90
177 184 8.991243 ATATGAATGAAACTCAACACAATTGG 57.009 30.769 10.83 1.35 0.00 3.16
233 280 1.527611 ATCCCGCATCTGCCACATG 60.528 57.895 0.00 0.00 37.91 3.21
512 565 6.510799 CGCTAGTAAGAAAATGAGGAAGCATG 60.511 42.308 0.00 0.00 0.00 4.06
572 633 0.514691 CTCTGTTTCTCCGTGCTTGC 59.485 55.000 0.00 0.00 0.00 4.01
1516 1596 4.054671 GTCAGACCTCAGAAGTGAACAAG 58.945 47.826 0.00 0.00 30.14 3.16
1522 1602 1.342074 TGGGTCAGACCTCAGAAGTG 58.658 55.000 19.57 0.00 38.64 3.16
2394 2475 8.306038 TGATATGTGTCGTGATTGATGATCATA 58.694 33.333 8.54 0.00 46.01 2.15
2397 2478 7.330208 TGATGATATGTGTCGTGATTGATGATC 59.670 37.037 0.00 0.00 35.21 2.92
2466 3396 2.104967 TCGGTAGTACCTTGGTCCATG 58.895 52.381 17.29 0.00 35.66 3.66
2476 3406 0.602905 GGCCATGCATCGGTAGTACC 60.603 60.000 9.50 9.50 34.05 3.34
2478 3408 0.762842 AGGGCCATGCATCGGTAGTA 60.763 55.000 6.18 0.00 0.00 1.82
2480 3410 1.598962 CAGGGCCATGCATCGGTAG 60.599 63.158 3.55 0.00 0.00 3.18
2481 3411 1.418097 ATCAGGGCCATGCATCGGTA 61.418 55.000 13.87 0.00 0.00 4.02
2483 3413 1.521450 GAATCAGGGCCATGCATCGG 61.521 60.000 13.87 3.31 0.00 4.18
2484 3414 0.536687 AGAATCAGGGCCATGCATCG 60.537 55.000 13.87 0.00 0.00 3.84
2486 3416 3.537795 ATAAGAATCAGGGCCATGCAT 57.462 42.857 13.87 3.06 0.00 3.96
2487 3417 4.104579 TCTTATAAGAATCAGGGCCATGCA 59.895 41.667 13.87 1.84 30.73 3.96
2488 3418 4.655963 TCTTATAAGAATCAGGGCCATGC 58.344 43.478 13.87 0.00 30.73 4.06
2489 3419 9.553064 GTATATCTTATAAGAATCAGGGCCATG 57.447 37.037 18.79 12.23 38.77 3.66
2490 3420 9.284131 TGTATATCTTATAAGAATCAGGGCCAT 57.716 33.333 18.79 0.00 38.77 4.40
2491 3421 8.679344 TGTATATCTTATAAGAATCAGGGCCA 57.321 34.615 18.79 5.81 38.77 5.36
2492 3422 8.207545 CCTGTATATCTTATAAGAATCAGGGCC 58.792 40.741 28.00 0.00 38.77 5.80
2493 3423 8.982723 TCCTGTATATCTTATAAGAATCAGGGC 58.017 37.037 30.82 17.61 38.77 5.19
2507 3437 9.084533 GGTAGTTCTCTGAATCCTGTATATCTT 57.915 37.037 0.00 0.00 0.00 2.40
2508 3438 7.392113 CGGTAGTTCTCTGAATCCTGTATATCT 59.608 40.741 0.00 0.00 0.00 1.98
2509 3439 7.531716 CGGTAGTTCTCTGAATCCTGTATATC 58.468 42.308 0.00 0.00 0.00 1.63
2510 3440 6.071840 GCGGTAGTTCTCTGAATCCTGTATAT 60.072 42.308 0.00 0.00 0.00 0.86
2511 3441 5.241064 GCGGTAGTTCTCTGAATCCTGTATA 59.759 44.000 0.00 0.00 0.00 1.47
2512 3442 4.038162 GCGGTAGTTCTCTGAATCCTGTAT 59.962 45.833 0.00 0.00 0.00 2.29
2513 3443 3.380637 GCGGTAGTTCTCTGAATCCTGTA 59.619 47.826 0.00 0.00 0.00 2.74
2514 3444 2.166664 GCGGTAGTTCTCTGAATCCTGT 59.833 50.000 0.00 0.00 0.00 4.00
2515 3445 2.166459 TGCGGTAGTTCTCTGAATCCTG 59.834 50.000 0.00 0.00 0.00 3.86
2516 3446 2.457598 TGCGGTAGTTCTCTGAATCCT 58.542 47.619 0.00 0.00 0.00 3.24
2517 3447 2.961526 TGCGGTAGTTCTCTGAATCC 57.038 50.000 0.00 0.00 0.00 3.01
2518 3448 5.773575 TGATATGCGGTAGTTCTCTGAATC 58.226 41.667 0.00 0.00 0.00 2.52
2519 3449 5.791336 TGATATGCGGTAGTTCTCTGAAT 57.209 39.130 0.00 0.00 0.00 2.57
2520 3450 5.791336 ATGATATGCGGTAGTTCTCTGAA 57.209 39.130 0.00 0.00 0.00 3.02
2521 3451 5.791336 AATGATATGCGGTAGTTCTCTGA 57.209 39.130 0.00 0.00 0.00 3.27
2522 3452 7.814587 TCAATAATGATATGCGGTAGTTCTCTG 59.185 37.037 0.00 0.00 0.00 3.35
2523 3453 7.896811 TCAATAATGATATGCGGTAGTTCTCT 58.103 34.615 0.00 0.00 0.00 3.10
2524 3454 8.534333 TTCAATAATGATATGCGGTAGTTCTC 57.466 34.615 0.00 0.00 34.96 2.87
2525 3455 8.774586 GTTTCAATAATGATATGCGGTAGTTCT 58.225 33.333 0.00 0.00 34.96 3.01
2526 3456 8.556194 TGTTTCAATAATGATATGCGGTAGTTC 58.444 33.333 0.00 0.00 34.96 3.01
2527 3457 8.445275 TGTTTCAATAATGATATGCGGTAGTT 57.555 30.769 0.00 0.00 34.96 2.24
2528 3458 8.621532 ATGTTTCAATAATGATATGCGGTAGT 57.378 30.769 0.00 0.00 34.96 2.73
2529 3459 8.939929 AGATGTTTCAATAATGATATGCGGTAG 58.060 33.333 0.00 0.00 34.96 3.18
2530 3460 8.846943 AGATGTTTCAATAATGATATGCGGTA 57.153 30.769 0.00 0.00 34.96 4.02
2531 3461 7.750229 AGATGTTTCAATAATGATATGCGGT 57.250 32.000 0.00 0.00 34.96 5.68
2532 3462 7.907045 GCTAGATGTTTCAATAATGATATGCGG 59.093 37.037 0.00 0.00 34.96 5.69
2533 3463 7.907045 GGCTAGATGTTTCAATAATGATATGCG 59.093 37.037 0.00 0.00 34.96 4.73
2534 3464 8.733458 TGGCTAGATGTTTCAATAATGATATGC 58.267 33.333 0.00 0.00 34.96 3.14
2538 3468 8.844244 GTCTTGGCTAGATGTTTCAATAATGAT 58.156 33.333 1.20 0.00 33.32 2.45
2539 3469 7.283127 GGTCTTGGCTAGATGTTTCAATAATGA 59.717 37.037 1.20 0.00 34.79 2.57
2540 3470 7.067372 TGGTCTTGGCTAGATGTTTCAATAATG 59.933 37.037 1.20 0.00 34.79 1.90
2541 3471 7.118723 TGGTCTTGGCTAGATGTTTCAATAAT 58.881 34.615 1.20 0.00 34.79 1.28
2542 3472 6.480763 TGGTCTTGGCTAGATGTTTCAATAA 58.519 36.000 1.20 0.00 34.79 1.40
2543 3473 6.061022 TGGTCTTGGCTAGATGTTTCAATA 57.939 37.500 1.20 0.00 34.79 1.90
2544 3474 4.922206 TGGTCTTGGCTAGATGTTTCAAT 58.078 39.130 1.20 0.00 34.79 2.57
2545 3475 4.365514 TGGTCTTGGCTAGATGTTTCAA 57.634 40.909 1.20 0.00 34.79 2.69
2546 3476 4.365514 TTGGTCTTGGCTAGATGTTTCA 57.634 40.909 1.20 0.00 34.79 2.69
2547 3477 4.762251 AGTTTGGTCTTGGCTAGATGTTTC 59.238 41.667 1.20 0.00 34.79 2.78
2548 3478 4.729868 AGTTTGGTCTTGGCTAGATGTTT 58.270 39.130 1.20 0.00 34.79 2.83
2549 3479 4.373156 AGTTTGGTCTTGGCTAGATGTT 57.627 40.909 1.20 0.00 34.79 2.71
2550 3480 4.202461 TGAAGTTTGGTCTTGGCTAGATGT 60.202 41.667 1.20 0.00 34.79 3.06
2551 3481 4.326826 TGAAGTTTGGTCTTGGCTAGATG 58.673 43.478 1.20 0.00 34.79 2.90
2552 3482 4.287067 TCTGAAGTTTGGTCTTGGCTAGAT 59.713 41.667 1.20 0.00 34.79 1.98
2553 3483 3.646162 TCTGAAGTTTGGTCTTGGCTAGA 59.354 43.478 0.00 0.00 0.00 2.43
2554 3484 3.999663 CTCTGAAGTTTGGTCTTGGCTAG 59.000 47.826 0.00 0.00 0.00 3.42
2555 3485 3.646162 TCTCTGAAGTTTGGTCTTGGCTA 59.354 43.478 0.00 0.00 0.00 3.93
2556 3486 2.439507 TCTCTGAAGTTTGGTCTTGGCT 59.560 45.455 0.00 0.00 0.00 4.75
2557 3487 2.851195 TCTCTGAAGTTTGGTCTTGGC 58.149 47.619 0.00 0.00 0.00 4.52
2558 3488 4.274459 CAGTTCTCTGAAGTTTGGTCTTGG 59.726 45.833 0.00 0.00 43.76 3.61
2559 3489 4.260948 GCAGTTCTCTGAAGTTTGGTCTTG 60.261 45.833 0.00 0.00 43.76 3.02
2560 3490 3.879892 GCAGTTCTCTGAAGTTTGGTCTT 59.120 43.478 0.00 0.00 43.76 3.01
2561 3491 3.135530 AGCAGTTCTCTGAAGTTTGGTCT 59.864 43.478 0.00 0.00 43.76 3.85
2562 3492 3.471680 AGCAGTTCTCTGAAGTTTGGTC 58.528 45.455 0.00 0.00 43.76 4.02
2563 3493 3.567478 AGCAGTTCTCTGAAGTTTGGT 57.433 42.857 0.00 0.00 43.76 3.67
2564 3494 3.879295 TCAAGCAGTTCTCTGAAGTTTGG 59.121 43.478 0.00 0.00 43.76 3.28
2565 3495 4.333649 TGTCAAGCAGTTCTCTGAAGTTTG 59.666 41.667 0.00 0.00 43.76 2.93
2566 3496 4.517285 TGTCAAGCAGTTCTCTGAAGTTT 58.483 39.130 0.00 0.00 43.76 2.66
2567 3497 4.142609 TGTCAAGCAGTTCTCTGAAGTT 57.857 40.909 0.00 0.00 43.76 2.66
2568 3498 3.827008 TGTCAAGCAGTTCTCTGAAGT 57.173 42.857 0.00 0.00 43.76 3.01
2569 3499 3.497640 CCTTGTCAAGCAGTTCTCTGAAG 59.502 47.826 7.09 0.00 43.76 3.02
2570 3500 3.470709 CCTTGTCAAGCAGTTCTCTGAA 58.529 45.455 7.09 0.00 43.76 3.02
2571 3501 2.224378 CCCTTGTCAAGCAGTTCTCTGA 60.224 50.000 7.09 0.00 43.76 3.27
2572 3502 2.149578 CCCTTGTCAAGCAGTTCTCTG 58.850 52.381 7.09 0.00 43.87 3.35
2573 3503 2.050144 TCCCTTGTCAAGCAGTTCTCT 58.950 47.619 7.09 0.00 0.00 3.10
2574 3504 2.550830 TCCCTTGTCAAGCAGTTCTC 57.449 50.000 7.09 0.00 0.00 2.87
2575 3505 3.297134 TTTCCCTTGTCAAGCAGTTCT 57.703 42.857 7.09 0.00 0.00 3.01
2576 3506 3.858503 GCATTTCCCTTGTCAAGCAGTTC 60.859 47.826 7.09 0.00 0.00 3.01
2577 3507 2.036346 GCATTTCCCTTGTCAAGCAGTT 59.964 45.455 7.09 0.00 0.00 3.16
2578 3508 1.615392 GCATTTCCCTTGTCAAGCAGT 59.385 47.619 7.09 0.00 0.00 4.40
2579 3509 1.891150 AGCATTTCCCTTGTCAAGCAG 59.109 47.619 7.09 1.05 0.00 4.24
2580 3510 1.999648 AGCATTTCCCTTGTCAAGCA 58.000 45.000 7.09 0.00 0.00 3.91
2581 3511 2.297033 TGAAGCATTTCCCTTGTCAAGC 59.703 45.455 7.09 0.00 32.09 4.01
2582 3512 3.305608 GGTGAAGCATTTCCCTTGTCAAG 60.306 47.826 5.53 5.53 32.09 3.02
2583 3513 2.627699 GGTGAAGCATTTCCCTTGTCAA 59.372 45.455 0.00 0.00 32.09 3.18
2584 3514 2.238521 GGTGAAGCATTTCCCTTGTCA 58.761 47.619 0.00 0.00 32.09 3.58
2585 3515 2.238521 TGGTGAAGCATTTCCCTTGTC 58.761 47.619 0.00 0.00 32.09 3.18
2586 3516 2.380064 TGGTGAAGCATTTCCCTTGT 57.620 45.000 0.00 0.00 32.09 3.16
2587 3517 2.827322 TCATGGTGAAGCATTTCCCTTG 59.173 45.455 0.00 0.00 34.16 3.61
2588 3518 2.827921 GTCATGGTGAAGCATTTCCCTT 59.172 45.455 0.00 0.00 32.09 3.95
2589 3519 2.225091 TGTCATGGTGAAGCATTTCCCT 60.225 45.455 0.00 0.00 32.09 4.20
2590 3520 2.170166 TGTCATGGTGAAGCATTTCCC 58.830 47.619 0.00 0.00 32.09 3.97
2591 3521 4.082081 TCAATGTCATGGTGAAGCATTTCC 60.082 41.667 0.00 0.00 32.09 3.13
2592 3522 5.063180 TCAATGTCATGGTGAAGCATTTC 57.937 39.130 0.00 0.00 0.00 2.17
2593 3523 4.768448 TCTCAATGTCATGGTGAAGCATTT 59.232 37.500 0.00 0.00 0.00 2.32
2594 3524 4.338012 TCTCAATGTCATGGTGAAGCATT 58.662 39.130 0.00 0.00 0.00 3.56
2595 3525 3.959293 TCTCAATGTCATGGTGAAGCAT 58.041 40.909 0.00 0.00 0.00 3.79
2596 3526 3.421919 TCTCAATGTCATGGTGAAGCA 57.578 42.857 0.00 0.00 0.00 3.91
2597 3527 4.771590 TTTCTCAATGTCATGGTGAAGC 57.228 40.909 5.16 0.00 0.00 3.86
2598 3528 5.184479 ACCATTTCTCAATGTCATGGTGAAG 59.816 40.000 1.29 0.00 44.87 3.02
2599 3529 5.078949 ACCATTTCTCAATGTCATGGTGAA 58.921 37.500 1.29 1.30 44.87 3.18
2600 3530 4.665451 ACCATTTCTCAATGTCATGGTGA 58.335 39.130 1.29 0.00 44.87 4.02
2601 3531 4.460034 TGACCATTTCTCAATGTCATGGTG 59.540 41.667 6.86 0.00 46.24 4.17
2603 3533 4.439700 GCTGACCATTTCTCAATGTCATGG 60.440 45.833 0.00 0.00 38.58 3.66
2604 3534 4.439700 GGCTGACCATTTCTCAATGTCATG 60.440 45.833 0.00 0.00 38.58 3.07
2605 3535 3.698040 GGCTGACCATTTCTCAATGTCAT 59.302 43.478 0.00 0.00 38.58 3.06
2606 3536 3.084039 GGCTGACCATTTCTCAATGTCA 58.916 45.455 0.00 0.00 38.58 3.58
2607 3537 2.096496 CGGCTGACCATTTCTCAATGTC 59.904 50.000 0.00 0.00 38.58 3.06
2608 3538 2.086869 CGGCTGACCATTTCTCAATGT 58.913 47.619 0.00 0.00 38.58 2.71
2609 3539 2.086869 ACGGCTGACCATTTCTCAATG 58.913 47.619 0.00 0.00 39.79 2.82
2610 3540 2.086869 CACGGCTGACCATTTCTCAAT 58.913 47.619 0.00 0.00 34.57 2.57
2611 3541 1.071542 TCACGGCTGACCATTTCTCAA 59.928 47.619 0.00 0.00 34.57 3.02
2612 3542 0.684535 TCACGGCTGACCATTTCTCA 59.315 50.000 0.00 0.00 34.57 3.27
2613 3543 1.363744 CTCACGGCTGACCATTTCTC 58.636 55.000 0.00 0.00 34.57 2.87
2614 3544 0.674895 GCTCACGGCTGACCATTTCT 60.675 55.000 0.00 0.00 38.06 2.52
2615 3545 1.796796 GCTCACGGCTGACCATTTC 59.203 57.895 0.00 0.00 38.06 2.17
2616 3546 2.034879 CGCTCACGGCTGACCATTT 61.035 57.895 0.00 0.00 39.13 2.32
2617 3547 2.434884 CGCTCACGGCTGACCATT 60.435 61.111 0.00 0.00 39.13 3.16
2626 3556 2.664851 TTTGTCAGGCGCTCACGG 60.665 61.111 7.64 0.00 40.57 4.94
2627 3557 1.621301 CTCTTTGTCAGGCGCTCACG 61.621 60.000 7.64 0.00 44.07 4.35
2628 3558 1.905922 GCTCTTTGTCAGGCGCTCAC 61.906 60.000 7.64 1.78 0.00 3.51
2629 3559 1.669115 GCTCTTTGTCAGGCGCTCA 60.669 57.895 7.64 0.00 0.00 4.26
2630 3560 1.023513 ATGCTCTTTGTCAGGCGCTC 61.024 55.000 7.64 0.00 0.00 5.03
2631 3561 1.002868 ATGCTCTTTGTCAGGCGCT 60.003 52.632 7.64 0.00 0.00 5.92
2632 3562 1.136147 CATGCTCTTTGTCAGGCGC 59.864 57.895 0.00 0.00 0.00 6.53
2633 3563 1.136147 GCATGCTCTTTGTCAGGCG 59.864 57.895 11.37 0.00 30.34 5.52
2634 3564 0.170561 CTGCATGCTCTTTGTCAGGC 59.829 55.000 20.33 0.00 40.04 4.85
2635 3565 0.809385 CCTGCATGCTCTTTGTCAGG 59.191 55.000 20.33 10.63 34.45 3.86
2636 3566 1.467734 GACCTGCATGCTCTTTGTCAG 59.532 52.381 20.33 4.78 0.00 3.51
2637 3567 1.527034 GACCTGCATGCTCTTTGTCA 58.473 50.000 20.33 0.00 0.00 3.58
2638 3568 0.807496 GGACCTGCATGCTCTTTGTC 59.193 55.000 20.33 16.06 0.00 3.18
2639 3569 0.403271 AGGACCTGCATGCTCTTTGT 59.597 50.000 20.33 8.44 0.00 2.83
2640 3570 1.093159 GAGGACCTGCATGCTCTTTG 58.907 55.000 20.33 5.18 34.41 2.77
2641 3571 0.694771 TGAGGACCTGCATGCTCTTT 59.305 50.000 20.33 0.00 37.88 2.52
2642 3572 0.694771 TTGAGGACCTGCATGCTCTT 59.305 50.000 20.33 4.32 37.88 2.85
2643 3573 0.035630 GTTGAGGACCTGCATGCTCT 60.036 55.000 20.33 8.36 37.88 4.09
2644 3574 1.028868 GGTTGAGGACCTGCATGCTC 61.029 60.000 20.33 8.13 45.55 4.26
2645 3575 1.001641 GGTTGAGGACCTGCATGCT 60.002 57.895 20.33 0.00 45.55 3.79
2646 3576 2.401766 CGGTTGAGGACCTGCATGC 61.402 63.158 11.82 11.82 46.92 4.06
2647 3577 0.606401 AACGGTTGAGGACCTGCATG 60.606 55.000 0.00 0.00 46.92 4.06
2648 3578 0.321653 GAACGGTTGAGGACCTGCAT 60.322 55.000 0.00 0.00 46.92 3.96
2649 3579 1.070786 GAACGGTTGAGGACCTGCA 59.929 57.895 0.00 0.00 46.92 4.41
2650 3580 0.534203 TTGAACGGTTGAGGACCTGC 60.534 55.000 0.00 0.00 46.92 4.85
2651 3581 1.602377 GTTTGAACGGTTGAGGACCTG 59.398 52.381 0.00 0.00 46.92 4.00
2652 3582 1.210967 TGTTTGAACGGTTGAGGACCT 59.789 47.619 0.00 0.00 46.92 3.85
2653 3583 1.602377 CTGTTTGAACGGTTGAGGACC 59.398 52.381 0.00 0.00 45.55 4.46
2654 3584 1.602377 CCTGTTTGAACGGTTGAGGAC 59.398 52.381 0.00 0.00 33.38 3.85
2655 3585 1.210967 ACCTGTTTGAACGGTTGAGGA 59.789 47.619 0.00 0.00 33.99 3.71
2656 3586 1.675552 ACCTGTTTGAACGGTTGAGG 58.324 50.000 0.00 0.00 33.99 3.86
2657 3587 2.032924 GGAACCTGTTTGAACGGTTGAG 59.967 50.000 19.92 2.83 41.94 3.02
2658 3588 2.018515 GGAACCTGTTTGAACGGTTGA 58.981 47.619 19.92 0.00 41.94 3.18
2659 3589 1.746220 TGGAACCTGTTTGAACGGTTG 59.254 47.619 19.92 3.66 41.94 3.77
2660 3590 2.021457 CTGGAACCTGTTTGAACGGTT 58.979 47.619 16.98 16.98 43.35 4.44
2661 3591 1.210967 TCTGGAACCTGTTTGAACGGT 59.789 47.619 2.34 3.88 37.39 4.83
2662 3592 1.602377 GTCTGGAACCTGTTTGAACGG 59.398 52.381 0.00 0.00 35.04 4.44
2663 3593 1.260561 CGTCTGGAACCTGTTTGAACG 59.739 52.381 0.00 0.00 0.00 3.95
2664 3594 1.602377 CCGTCTGGAACCTGTTTGAAC 59.398 52.381 0.00 0.00 37.49 3.18
2665 3595 1.487142 TCCGTCTGGAACCTGTTTGAA 59.513 47.619 0.00 0.00 42.85 2.69
2666 3596 1.124780 TCCGTCTGGAACCTGTTTGA 58.875 50.000 0.00 0.00 42.85 2.69
2667 3597 3.698250 TCCGTCTGGAACCTGTTTG 57.302 52.632 0.00 0.00 42.85 2.93
2677 3607 2.110967 CCAGCTGCAATCCGTCTGG 61.111 63.158 8.66 0.00 38.41 3.86
2678 3608 1.078918 TCCAGCTGCAATCCGTCTG 60.079 57.895 8.66 0.00 0.00 3.51
2679 3609 1.220206 CTCCAGCTGCAATCCGTCT 59.780 57.895 8.66 0.00 0.00 4.18
2680 3610 0.674895 AACTCCAGCTGCAATCCGTC 60.675 55.000 8.66 0.00 0.00 4.79
2681 3611 0.674895 GAACTCCAGCTGCAATCCGT 60.675 55.000 8.66 0.00 0.00 4.69
2682 3612 0.392193 AGAACTCCAGCTGCAATCCG 60.392 55.000 8.66 0.00 0.00 4.18
2683 3613 1.093159 CAGAACTCCAGCTGCAATCC 58.907 55.000 8.66 0.00 0.00 3.01
2689 3619 0.590195 GTTGTGCAGAACTCCAGCTG 59.410 55.000 18.82 6.78 35.28 4.24
2690 3620 0.471617 AGTTGTGCAGAACTCCAGCT 59.528 50.000 22.60 3.35 29.85 4.24
2691 3621 0.590195 CAGTTGTGCAGAACTCCAGC 59.410 55.000 25.11 2.31 33.75 4.85
2692 3622 2.245159 TCAGTTGTGCAGAACTCCAG 57.755 50.000 25.11 15.00 33.75 3.86
2693 3623 2.288666 GTTCAGTTGTGCAGAACTCCA 58.711 47.619 25.11 12.81 39.55 3.86
2694 3624 2.288666 TGTTCAGTTGTGCAGAACTCC 58.711 47.619 25.11 16.13 42.07 3.85
2695 3625 4.094887 TCTTTGTTCAGTTGTGCAGAACTC 59.905 41.667 25.11 15.23 42.07 3.01
2696 3626 4.009675 TCTTTGTTCAGTTGTGCAGAACT 58.990 39.130 22.60 22.60 42.07 3.01
2697 3627 4.355543 TCTTTGTTCAGTTGTGCAGAAC 57.644 40.909 18.49 18.49 41.96 3.01
2698 3628 4.639755 TGATCTTTGTTCAGTTGTGCAGAA 59.360 37.500 0.00 0.00 0.00 3.02
2699 3629 4.198530 TGATCTTTGTTCAGTTGTGCAGA 58.801 39.130 0.00 0.00 0.00 4.26
2700 3630 4.556942 TGATCTTTGTTCAGTTGTGCAG 57.443 40.909 0.00 0.00 0.00 4.41
2701 3631 4.579753 TCATGATCTTTGTTCAGTTGTGCA 59.420 37.500 0.00 0.00 0.00 4.57
2702 3632 5.112220 TCATGATCTTTGTTCAGTTGTGC 57.888 39.130 0.00 0.00 0.00 4.57
2703 3633 6.584942 CCATTCATGATCTTTGTTCAGTTGTG 59.415 38.462 0.00 0.00 0.00 3.33
2704 3634 6.684686 CCATTCATGATCTTTGTTCAGTTGT 58.315 36.000 0.00 0.00 0.00 3.32
2705 3635 5.575606 GCCATTCATGATCTTTGTTCAGTTG 59.424 40.000 0.00 0.00 0.00 3.16
2706 3636 5.620654 CGCCATTCATGATCTTTGTTCAGTT 60.621 40.000 0.00 0.00 0.00 3.16
2707 3637 4.142534 CGCCATTCATGATCTTTGTTCAGT 60.143 41.667 0.00 0.00 0.00 3.41
2708 3638 4.095334 TCGCCATTCATGATCTTTGTTCAG 59.905 41.667 0.00 0.00 0.00 3.02
2709 3639 4.009002 TCGCCATTCATGATCTTTGTTCA 58.991 39.130 0.00 0.00 0.00 3.18
2710 3640 4.346129 GTCGCCATTCATGATCTTTGTTC 58.654 43.478 0.00 0.00 0.00 3.18
2711 3641 3.129287 GGTCGCCATTCATGATCTTTGTT 59.871 43.478 0.00 0.00 0.00 2.83
2712 3642 2.684881 GGTCGCCATTCATGATCTTTGT 59.315 45.455 0.00 0.00 0.00 2.83
2713 3643 2.684374 TGGTCGCCATTCATGATCTTTG 59.316 45.455 0.00 0.00 0.00 2.77
2714 3644 3.003394 TGGTCGCCATTCATGATCTTT 57.997 42.857 0.00 0.00 0.00 2.52
2715 3645 2.715749 TGGTCGCCATTCATGATCTT 57.284 45.000 0.00 0.00 0.00 2.40
2716 3646 2.945080 ATGGTCGCCATTCATGATCT 57.055 45.000 0.00 0.00 42.23 2.75
2717 3647 3.402110 TGTATGGTCGCCATTCATGATC 58.598 45.455 15.07 0.00 42.23 2.92
2718 3648 3.490439 TGTATGGTCGCCATTCATGAT 57.510 42.857 15.07 0.00 42.23 2.45
2719 3649 2.998316 TGTATGGTCGCCATTCATGA 57.002 45.000 15.07 0.00 42.23 3.07
2720 3650 4.572985 AAATGTATGGTCGCCATTCATG 57.427 40.909 22.08 0.00 46.33 3.07
2722 3652 6.319911 TGAATAAAATGTATGGTCGCCATTCA 59.680 34.615 15.07 15.70 42.23 2.57
2723 3653 6.636850 GTGAATAAAATGTATGGTCGCCATTC 59.363 38.462 15.07 11.29 42.23 2.67
2724 3654 6.096141 TGTGAATAAAATGTATGGTCGCCATT 59.904 34.615 15.07 2.09 42.23 3.16
2725 3655 5.592282 TGTGAATAAAATGTATGGTCGCCAT 59.408 36.000 14.43 14.43 46.99 4.40
2726 3656 4.944317 TGTGAATAAAATGTATGGTCGCCA 59.056 37.500 1.01 1.01 38.19 5.69
2744 3674 8.129496 TCTTTGTATGGTACTGTAGATGTGAA 57.871 34.615 0.00 0.00 0.00 3.18
2746 3676 8.035394 ACTTCTTTGTATGGTACTGTAGATGTG 58.965 37.037 0.00 0.00 0.00 3.21
2747 3677 8.135382 ACTTCTTTGTATGGTACTGTAGATGT 57.865 34.615 0.00 0.00 0.00 3.06
2748 3678 9.737427 CTACTTCTTTGTATGGTACTGTAGATG 57.263 37.037 0.00 0.00 0.00 2.90
2749 3679 9.696572 TCTACTTCTTTGTATGGTACTGTAGAT 57.303 33.333 0.00 0.00 31.20 1.98
2750 3680 9.175312 CTCTACTTCTTTGTATGGTACTGTAGA 57.825 37.037 0.00 0.00 33.88 2.59
2751 3681 8.407064 CCTCTACTTCTTTGTATGGTACTGTAG 58.593 40.741 0.00 0.00 0.00 2.74
2752 3682 7.147949 GCCTCTACTTCTTTGTATGGTACTGTA 60.148 40.741 0.00 0.00 0.00 2.74
2755 3685 5.163540 CGCCTCTACTTCTTTGTATGGTACT 60.164 44.000 0.00 0.00 0.00 2.73
2757 3687 4.441079 GCGCCTCTACTTCTTTGTATGGTA 60.441 45.833 0.00 0.00 0.00 3.25
2758 3688 3.679083 GCGCCTCTACTTCTTTGTATGGT 60.679 47.826 0.00 0.00 0.00 3.55
2759 3689 2.866762 GCGCCTCTACTTCTTTGTATGG 59.133 50.000 0.00 0.00 0.00 2.74
2760 3690 3.521560 TGCGCCTCTACTTCTTTGTATG 58.478 45.455 4.18 0.00 0.00 2.39
2761 3691 3.447586 TCTGCGCCTCTACTTCTTTGTAT 59.552 43.478 4.18 0.00 0.00 2.29
2762 3692 2.823747 TCTGCGCCTCTACTTCTTTGTA 59.176 45.455 4.18 0.00 0.00 2.41
2763 3693 1.618837 TCTGCGCCTCTACTTCTTTGT 59.381 47.619 4.18 0.00 0.00 2.83
2765 3695 1.404851 GCTCTGCGCCTCTACTTCTTT 60.405 52.381 4.18 0.00 0.00 2.52
2766 3696 0.174617 GCTCTGCGCCTCTACTTCTT 59.825 55.000 4.18 0.00 0.00 2.52
2767 3697 1.813192 GCTCTGCGCCTCTACTTCT 59.187 57.895 4.18 0.00 0.00 2.85
2768 3698 4.411136 GCTCTGCGCCTCTACTTC 57.589 61.111 4.18 0.00 0.00 3.01
2778 3708 1.948138 CTATGTGCTCGGCTCTGCG 60.948 63.158 0.00 0.00 0.00 5.18
2779 3709 1.593750 CCTATGTGCTCGGCTCTGC 60.594 63.158 0.00 0.00 0.00 4.26
2780 3710 1.593750 GCCTATGTGCTCGGCTCTG 60.594 63.158 0.00 0.00 40.62 3.35
2783 3713 1.450312 GTTGCCTATGTGCTCGGCT 60.450 57.895 0.00 0.00 44.09 5.52
2784 3714 1.097547 ATGTTGCCTATGTGCTCGGC 61.098 55.000 0.00 0.00 44.02 5.54
2785 3715 2.138320 CTATGTTGCCTATGTGCTCGG 58.862 52.381 0.00 0.00 0.00 4.63
2786 3716 2.826428 ACTATGTTGCCTATGTGCTCG 58.174 47.619 0.00 0.00 0.00 5.03
2787 3717 5.201713 TCTACTATGTTGCCTATGTGCTC 57.798 43.478 0.00 0.00 0.00 4.26
2789 3719 5.817816 AGTTTCTACTATGTTGCCTATGTGC 59.182 40.000 0.00 0.00 31.21 4.57
2791 3721 9.379791 GTAAAGTTTCTACTATGTTGCCTATGT 57.620 33.333 0.00 0.00 33.17 2.29
2793 3723 9.819267 GAGTAAAGTTTCTACTATGTTGCCTAT 57.181 33.333 0.00 0.00 33.17 2.57
2794 3724 8.809066 TGAGTAAAGTTTCTACTATGTTGCCTA 58.191 33.333 0.00 0.00 33.17 3.93
2795 3725 7.676947 TGAGTAAAGTTTCTACTATGTTGCCT 58.323 34.615 0.00 0.00 33.17 4.75
2796 3726 7.603024 ACTGAGTAAAGTTTCTACTATGTTGCC 59.397 37.037 0.00 0.00 33.17 4.52
2797 3727 8.535690 ACTGAGTAAAGTTTCTACTATGTTGC 57.464 34.615 0.00 0.00 33.17 4.17
2811 3741 8.919145 CCTTGAGGATATCTAACTGAGTAAAGT 58.081 37.037 2.05 0.00 37.39 2.66
2812 3742 8.919145 ACCTTGAGGATATCTAACTGAGTAAAG 58.081 37.037 3.59 0.00 38.94 1.85
2813 3743 8.696374 CACCTTGAGGATATCTAACTGAGTAAA 58.304 37.037 3.59 0.00 38.94 2.01
2814 3744 8.059461 TCACCTTGAGGATATCTAACTGAGTAA 58.941 37.037 3.59 0.00 38.94 2.24
2815 3745 7.583625 TCACCTTGAGGATATCTAACTGAGTA 58.416 38.462 3.59 0.00 38.94 2.59
2816 3746 6.436027 TCACCTTGAGGATATCTAACTGAGT 58.564 40.000 3.59 0.00 38.94 3.41
2817 3747 6.968263 TCACCTTGAGGATATCTAACTGAG 57.032 41.667 3.59 0.00 38.94 3.35
2818 3748 6.239430 GCATCACCTTGAGGATATCTAACTGA 60.239 42.308 3.59 0.00 38.94 3.41
2819 3749 5.931146 GCATCACCTTGAGGATATCTAACTG 59.069 44.000 3.59 0.00 38.94 3.16
2820 3750 5.279206 CGCATCACCTTGAGGATATCTAACT 60.279 44.000 3.59 0.00 38.94 2.24
2821 3751 4.926238 CGCATCACCTTGAGGATATCTAAC 59.074 45.833 3.59 0.00 38.94 2.34
2822 3752 4.832823 TCGCATCACCTTGAGGATATCTAA 59.167 41.667 3.59 0.00 38.94 2.10
2823 3753 4.407365 TCGCATCACCTTGAGGATATCTA 58.593 43.478 3.59 0.00 38.94 1.98
2824 3754 3.234353 TCGCATCACCTTGAGGATATCT 58.766 45.455 3.59 0.00 38.94 1.98
2825 3755 3.667497 TCGCATCACCTTGAGGATATC 57.333 47.619 3.59 0.00 38.94 1.63
2826 3756 3.389329 AGTTCGCATCACCTTGAGGATAT 59.611 43.478 3.59 0.00 38.94 1.63
2827 3757 2.766263 AGTTCGCATCACCTTGAGGATA 59.234 45.455 3.59 0.00 38.94 2.59
2828 3758 1.556911 AGTTCGCATCACCTTGAGGAT 59.443 47.619 3.59 0.00 38.94 3.24
2829 3759 0.976641 AGTTCGCATCACCTTGAGGA 59.023 50.000 3.59 0.00 38.94 3.71
2830 3760 2.544685 CTAGTTCGCATCACCTTGAGG 58.455 52.381 0.00 0.00 42.17 3.86
2831 3761 1.929836 GCTAGTTCGCATCACCTTGAG 59.070 52.381 0.00 0.00 0.00 3.02
2832 3762 1.550524 AGCTAGTTCGCATCACCTTGA 59.449 47.619 0.00 0.00 0.00 3.02
2833 3763 2.015736 AGCTAGTTCGCATCACCTTG 57.984 50.000 0.00 0.00 0.00 3.61
2834 3764 2.289694 ACAAGCTAGTTCGCATCACCTT 60.290 45.455 0.00 0.00 0.00 3.50
2835 3765 1.276421 ACAAGCTAGTTCGCATCACCT 59.724 47.619 0.00 0.00 0.00 4.00
2836 3766 1.726853 ACAAGCTAGTTCGCATCACC 58.273 50.000 0.00 0.00 0.00 4.02
2837 3767 4.566759 TCAATACAAGCTAGTTCGCATCAC 59.433 41.667 0.00 0.00 0.00 3.06
2838 3768 4.754322 TCAATACAAGCTAGTTCGCATCA 58.246 39.130 0.00 0.00 0.00 3.07
2839 3769 4.806247 ACTCAATACAAGCTAGTTCGCATC 59.194 41.667 0.00 0.00 0.00 3.91
2840 3770 4.568359 CACTCAATACAAGCTAGTTCGCAT 59.432 41.667 0.00 0.00 0.00 4.73
2841 3771 3.926527 CACTCAATACAAGCTAGTTCGCA 59.073 43.478 0.00 0.00 0.00 5.10
2842 3772 3.242123 GCACTCAATACAAGCTAGTTCGC 60.242 47.826 0.00 0.00 0.00 4.70
2843 3773 3.307242 GGCACTCAATACAAGCTAGTTCG 59.693 47.826 0.00 0.00 0.00 3.95
2844 3774 4.508662 AGGCACTCAATACAAGCTAGTTC 58.491 43.478 0.00 0.00 0.00 3.01
2845 3775 4.559862 AGGCACTCAATACAAGCTAGTT 57.440 40.909 0.00 0.00 0.00 2.24
2846 3776 4.508662 GAAGGCACTCAATACAAGCTAGT 58.491 43.478 0.00 0.00 38.49 2.57
2847 3777 3.873952 GGAAGGCACTCAATACAAGCTAG 59.126 47.826 0.00 0.00 38.49 3.42
2848 3778 3.370527 GGGAAGGCACTCAATACAAGCTA 60.371 47.826 0.00 0.00 38.49 3.32
2849 3779 2.619074 GGGAAGGCACTCAATACAAGCT 60.619 50.000 0.00 0.00 38.49 3.74
2850 3780 1.745653 GGGAAGGCACTCAATACAAGC 59.254 52.381 0.00 0.00 38.49 4.01
2851 3781 3.071874 TGGGAAGGCACTCAATACAAG 57.928 47.619 0.00 0.00 38.49 3.16
2852 3782 3.181434 ACTTGGGAAGGCACTCAATACAA 60.181 43.478 0.00 0.00 38.49 2.41
2853 3783 2.375174 ACTTGGGAAGGCACTCAATACA 59.625 45.455 0.00 0.00 38.49 2.29
2854 3784 3.010420 GACTTGGGAAGGCACTCAATAC 58.990 50.000 0.00 0.00 38.49 1.89
2855 3785 2.912956 AGACTTGGGAAGGCACTCAATA 59.087 45.455 0.00 0.00 39.74 1.90
2856 3786 1.707427 AGACTTGGGAAGGCACTCAAT 59.293 47.619 0.00 0.00 39.74 2.57
2857 3787 1.140312 AGACTTGGGAAGGCACTCAA 58.860 50.000 0.00 0.00 39.74 3.02
2858 3788 1.072331 GAAGACTTGGGAAGGCACTCA 59.928 52.381 0.00 0.00 39.74 3.41
2859 3789 1.349357 AGAAGACTTGGGAAGGCACTC 59.651 52.381 0.00 0.00 39.74 3.51
2860 3790 1.439543 AGAAGACTTGGGAAGGCACT 58.560 50.000 0.00 0.00 39.74 4.40
2861 3791 3.636153 ATAGAAGACTTGGGAAGGCAC 57.364 47.619 0.00 0.00 39.74 5.01
2862 3792 5.219739 AGATATAGAAGACTTGGGAAGGCA 58.780 41.667 0.00 0.00 39.74 4.75
2863 3793 5.279758 GGAGATATAGAAGACTTGGGAAGGC 60.280 48.000 0.00 0.00 36.52 4.35
2864 3794 6.081356 AGGAGATATAGAAGACTTGGGAAGG 58.919 44.000 0.00 0.00 0.00 3.46
2865 3795 8.713708 TTAGGAGATATAGAAGACTTGGGAAG 57.286 38.462 0.00 0.00 0.00 3.46
2866 3796 7.233757 GCTTAGGAGATATAGAAGACTTGGGAA 59.766 40.741 0.00 0.00 0.00 3.97
2867 3797 6.722129 GCTTAGGAGATATAGAAGACTTGGGA 59.278 42.308 0.00 0.00 0.00 4.37
2868 3798 6.495181 TGCTTAGGAGATATAGAAGACTTGGG 59.505 42.308 0.00 0.00 0.00 4.12
2869 3799 7.531857 TGCTTAGGAGATATAGAAGACTTGG 57.468 40.000 0.00 0.00 0.00 3.61
2870 3800 8.801299 TGATGCTTAGGAGATATAGAAGACTTG 58.199 37.037 0.00 0.00 0.00 3.16
2871 3801 8.948401 TGATGCTTAGGAGATATAGAAGACTT 57.052 34.615 0.00 0.00 0.00 3.01
2872 3802 9.545928 AATGATGCTTAGGAGATATAGAAGACT 57.454 33.333 0.00 0.00 0.00 3.24
2877 3807 9.114952 CGAGTAATGATGCTTAGGAGATATAGA 57.885 37.037 0.00 0.00 0.00 1.98
2878 3808 9.114952 TCGAGTAATGATGCTTAGGAGATATAG 57.885 37.037 0.00 0.00 0.00 1.31
2879 3809 9.634021 ATCGAGTAATGATGCTTAGGAGATATA 57.366 33.333 0.00 0.00 0.00 0.86
2880 3810 7.946381 TCGAGTAATGATGCTTAGGAGATAT 57.054 36.000 0.00 0.00 0.00 1.63
2881 3811 7.831690 AGATCGAGTAATGATGCTTAGGAGATA 59.168 37.037 0.00 0.00 0.00 1.98
2882 3812 6.663093 AGATCGAGTAATGATGCTTAGGAGAT 59.337 38.462 0.00 0.00 0.00 2.75
2908 3838 3.335579 GGCCGGATATTATTCAGGTGAC 58.664 50.000 5.05 0.00 33.94 3.67
2925 3855 1.144057 AGCTATGGAAGAACGGCCG 59.856 57.895 26.86 26.86 0.00 6.13
2944 3874 1.986575 GCTCTTGAGTGCCGGAATGC 61.987 60.000 5.05 0.00 0.00 3.56
3066 4001 5.171337 GTGTTAAAAGTTGTCTTCATGTGCG 59.829 40.000 0.00 0.00 32.90 5.34
3067 4002 6.033341 TGTGTTAAAAGTTGTCTTCATGTGC 58.967 36.000 0.00 0.00 32.90 4.57
3080 4015 7.308589 GCCAGATGTTAGACATGTGTTAAAAGT 60.309 37.037 1.15 0.00 45.26 2.66
3092 4027 3.067320 CGATCTCTGCCAGATGTTAGACA 59.933 47.826 0.00 0.00 42.48 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.