Multiple sequence alignment - TraesCS1B01G038200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G038200 chr1B 100.000 4309 0 0 1 4309 17897564 17893256 0.000000e+00 7958.0
1 TraesCS1B01G038200 chr1B 93.112 2744 169 12 1017 3745 18683367 18686105 0.000000e+00 4002.0
2 TraesCS1B01G038200 chr1B 95.995 2272 90 1 1478 3748 18093322 18091051 0.000000e+00 3690.0
3 TraesCS1B01G038200 chr1B 90.902 2396 197 4 989 3383 18867703 18870078 0.000000e+00 3197.0
4 TraesCS1B01G038200 chr1B 86.204 2798 338 29 977 3737 18118671 18115885 0.000000e+00 2985.0
5 TraesCS1B01G038200 chr1B 89.244 2380 240 10 1374 3748 539872559 539870191 0.000000e+00 2963.0
6 TraesCS1B01G038200 chr1B 93.369 1870 109 2 989 2858 539933632 539931778 0.000000e+00 2752.0
7 TraesCS1B01G038200 chr1B 98.732 631 6 2 1 631 17904338 17903710 0.000000e+00 1120.0
8 TraesCS1B01G038200 chr1B 91.827 624 48 3 1 622 539875198 539874576 0.000000e+00 867.0
9 TraesCS1B01G038200 chr1B 86.491 607 64 11 962 1558 17966282 17965684 0.000000e+00 651.0
10 TraesCS1B01G038200 chr1B 91.704 446 19 5 3743 4181 38067512 38067078 1.710000e-168 603.0
11 TraesCS1B01G038200 chr1B 85.743 498 63 7 1 496 426440158 426439667 1.780000e-143 520.0
12 TraesCS1B01G038200 chr1B 84.325 504 66 7 1 498 558261329 558261825 8.380000e-132 481.0
13 TraesCS1B01G038200 chr1B 92.019 213 2 8 620 832 17903617 17903420 7.050000e-73 285.0
14 TraesCS1B01G038200 chr1B 93.431 137 8 1 495 631 18851395 18851530 7.310000e-48 202.0
15 TraesCS1B01G038200 chr1B 92.079 101 7 1 737 836 539873808 539873708 1.620000e-29 141.0
16 TraesCS1B01G038200 chr1B 95.556 45 2 0 759 803 18852252 18852296 5.980000e-09 73.1
17 TraesCS1B01G038200 chr2B 90.175 2575 214 18 920 3481 95097537 95094989 0.000000e+00 3317.0
18 TraesCS1B01G038200 chr2B 94.737 228 11 1 3524 3750 95094920 95094693 1.910000e-93 353.0
19 TraesCS1B01G038200 chr2B 92.000 50 3 1 3588 3637 95094960 95094912 7.730000e-08 69.4
20 TraesCS1B01G038200 chr1D 90.568 2396 211 4 989 3383 13252271 13254652 0.000000e+00 3158.0
21 TraesCS1B01G038200 chr1D 85.881 2741 319 39 920 3630 12552050 12549348 0.000000e+00 2856.0
22 TraesCS1B01G038200 chr1D 85.239 2798 357 36 984 3745 13262425 13265202 0.000000e+00 2828.0
23 TraesCS1B01G038200 chr1D 90.037 542 31 8 3743 4270 12530512 12531044 0.000000e+00 680.0
24 TraesCS1B01G038200 chr1D 91.946 447 19 7 3743 4181 21864102 21863665 1.020000e-170 610.0
25 TraesCS1B01G038200 chr1D 84.764 466 62 6 11 470 450708897 450708435 3.930000e-125 459.0
26 TraesCS1B01G038200 chr1D 95.181 83 2 1 4191 4271 21863616 21863534 3.500000e-26 130.0
27 TraesCS1B01G038200 chr1A 86.074 2664 312 42 737 3384 14584667 14587287 0.000000e+00 2809.0
28 TraesCS1B01G038200 chr1A 91.131 451 19 10 3743 4181 23180508 23180067 3.710000e-165 592.0
29 TraesCS1B01G038200 chr6D 93.122 567 25 7 3746 4309 81380903 81380348 0.000000e+00 819.0
30 TraesCS1B01G038200 chr6A 88.664 494 53 3 1 492 570489366 570489858 2.220000e-167 599.0
31 TraesCS1B01G038200 chr6A 83.929 504 70 9 1 499 538550048 538550545 5.040000e-129 472.0
32 TraesCS1B01G038200 chr7A 83.266 496 76 6 1 495 671920378 671919889 2.360000e-122 449.0
33 TraesCS1B01G038200 chr3B 82.996 494 74 8 9 495 23590835 23591325 5.120000e-119 438.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G038200 chr1B 17893256 17897564 4308 True 7958.000000 7958 100.0000 1 4309 1 chr1B.!!$R1 4308
1 TraesCS1B01G038200 chr1B 18683367 18686105 2738 False 4002.000000 4002 93.1120 1017 3745 1 chr1B.!!$F1 2728
2 TraesCS1B01G038200 chr1B 18091051 18093322 2271 True 3690.000000 3690 95.9950 1478 3748 1 chr1B.!!$R3 2270
3 TraesCS1B01G038200 chr1B 18867703 18870078 2375 False 3197.000000 3197 90.9020 989 3383 1 chr1B.!!$F2 2394
4 TraesCS1B01G038200 chr1B 18115885 18118671 2786 True 2985.000000 2985 86.2040 977 3737 1 chr1B.!!$R4 2760
5 TraesCS1B01G038200 chr1B 539931778 539933632 1854 True 2752.000000 2752 93.3690 989 2858 1 chr1B.!!$R7 1869
6 TraesCS1B01G038200 chr1B 539870191 539875198 5007 True 1323.666667 2963 91.0500 1 3748 3 chr1B.!!$R9 3747
7 TraesCS1B01G038200 chr1B 17903420 17904338 918 True 702.500000 1120 95.3755 1 832 2 chr1B.!!$R8 831
8 TraesCS1B01G038200 chr1B 17965684 17966282 598 True 651.000000 651 86.4910 962 1558 1 chr1B.!!$R2 596
9 TraesCS1B01G038200 chr2B 95094693 95097537 2844 True 1246.466667 3317 92.3040 920 3750 3 chr2B.!!$R1 2830
10 TraesCS1B01G038200 chr1D 13252271 13254652 2381 False 3158.000000 3158 90.5680 989 3383 1 chr1D.!!$F2 2394
11 TraesCS1B01G038200 chr1D 12549348 12552050 2702 True 2856.000000 2856 85.8810 920 3630 1 chr1D.!!$R1 2710
12 TraesCS1B01G038200 chr1D 13262425 13265202 2777 False 2828.000000 2828 85.2390 984 3745 1 chr1D.!!$F3 2761
13 TraesCS1B01G038200 chr1D 12530512 12531044 532 False 680.000000 680 90.0370 3743 4270 1 chr1D.!!$F1 527
14 TraesCS1B01G038200 chr1D 21863534 21864102 568 True 370.000000 610 93.5635 3743 4271 2 chr1D.!!$R3 528
15 TraesCS1B01G038200 chr1A 14584667 14587287 2620 False 2809.000000 2809 86.0740 737 3384 1 chr1A.!!$F1 2647
16 TraesCS1B01G038200 chr6D 81380348 81380903 555 True 819.000000 819 93.1220 3746 4309 1 chr6D.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1919 1.172180 TTGGAAAAGCACCTCTGCCG 61.172 55.000 0.0 0.0 45.53 5.69 F
975 1962 1.739562 CCCACTCGTCTTGCTCAGC 60.740 63.158 0.0 0.0 0.00 4.26 F
2211 3542 0.799917 CGAGTCCAGATGCAGTCACG 60.800 60.000 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 3523 0.799917 CGTGACTGCATCTGGACTCG 60.800 60.000 0.00 0.0 0.00 4.18 R
2770 4101 1.160329 GCAGCAACAGTTCGTCCAGT 61.160 55.000 0.00 0.0 0.00 4.00 R
4144 5594 1.143684 GAAAGGGGCCATATCAGCTCA 59.856 52.381 4.39 0.0 29.87 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
614 618 1.270550 CACTGCACCACTTGATTTCCC 59.729 52.381 0.00 0.00 0.00 3.97
883 1838 8.612486 TGGTACCTGAAAAAGATATACTACCA 57.388 34.615 14.36 0.00 0.00 3.25
884 1839 9.049050 TGGTACCTGAAAAAGATATACTACCAA 57.951 33.333 14.36 0.00 0.00 3.67
902 1857 8.040716 ACTACCAAAGTATAAGATGTTTGTGC 57.959 34.615 0.00 0.00 36.36 4.57
903 1858 6.892658 ACCAAAGTATAAGATGTTTGTGCA 57.107 33.333 0.00 0.00 0.00 4.57
907 1862 8.081633 CCAAAGTATAAGATGTTTGTGCAGAAA 58.918 33.333 4.66 4.66 0.00 2.52
908 1863 9.462174 CAAAGTATAAGATGTTTGTGCAGAAAA 57.538 29.630 11.02 0.11 0.00 2.29
912 1867 9.210426 GTATAAGATGTTTGTGCAGAAAATACG 57.790 33.333 11.02 0.00 0.00 3.06
914 1869 4.759693 AGATGTTTGTGCAGAAAATACGGA 59.240 37.500 11.02 0.00 0.00 4.69
915 1870 4.481930 TGTTTGTGCAGAAAATACGGAG 57.518 40.909 11.02 0.00 0.00 4.63
918 1873 1.626321 TGTGCAGAAAATACGGAGGGA 59.374 47.619 0.00 0.00 0.00 4.20
938 1912 3.004419 GGAGTACAACTTGGAAAAGCACC 59.996 47.826 0.00 0.00 0.00 5.01
939 1913 3.883489 GAGTACAACTTGGAAAAGCACCT 59.117 43.478 0.00 0.00 0.00 4.00
940 1914 3.883489 AGTACAACTTGGAAAAGCACCTC 59.117 43.478 0.00 0.00 0.00 3.85
941 1915 3.018423 ACAACTTGGAAAAGCACCTCT 57.982 42.857 0.00 0.00 0.00 3.69
945 1919 1.172180 TTGGAAAAGCACCTCTGCCG 61.172 55.000 0.00 0.00 45.53 5.69
947 1921 2.203337 AAAAGCACCTCTGCCGCA 60.203 55.556 0.00 0.00 45.53 5.69
956 1934 2.755876 TCTGCCGCATCGTCTCCT 60.756 61.111 0.00 0.00 0.00 3.69
957 1935 2.279120 CTGCCGCATCGTCTCCTC 60.279 66.667 0.00 0.00 0.00 3.71
975 1962 1.739562 CCCACTCGTCTTGCTCAGC 60.740 63.158 0.00 0.00 0.00 4.26
986 1977 3.112709 GCTCAGCGTTCACGACCC 61.113 66.667 2.87 0.00 43.02 4.46
2192 3523 3.648339 TGAAATGCAGAAACAAGGAGC 57.352 42.857 0.00 0.00 0.00 4.70
2211 3542 0.799917 CGAGTCCAGATGCAGTCACG 60.800 60.000 0.00 0.00 0.00 4.35
2300 3631 6.656632 TCAGATGATTGATACAGGAGTACC 57.343 41.667 0.00 0.00 31.96 3.34
2513 3844 4.864704 TGATAGCGCACATAGGTATGAA 57.135 40.909 11.47 0.00 37.15 2.57
2553 3884 6.630203 TTTAATATACTGGGCGGTGGATAT 57.370 37.500 0.00 0.00 0.00 1.63
2668 3999 8.406172 ACTTATTAATGGCTATTGCAAAAACG 57.594 30.769 1.71 0.00 41.91 3.60
2677 4008 6.096695 GGCTATTGCAAAAACGAAAGGATTA 58.903 36.000 1.71 0.00 41.91 1.75
2686 4017 3.622166 ACGAAAGGATTAACGATGGGT 57.378 42.857 0.00 0.00 33.56 4.51
2769 4100 8.190326 ACGTCATACTGGATGGATTATTTCTA 57.810 34.615 0.00 0.00 36.08 2.10
2770 4101 8.647796 ACGTCATACTGGATGGATTATTTCTAA 58.352 33.333 0.00 0.00 36.08 2.10
3538 4944 4.082845 CCAGAACAGAAGACAGACCTAGA 58.917 47.826 0.00 0.00 0.00 2.43
3542 4948 4.931027 ACAGAAGACAGACCTAGACCTA 57.069 45.455 0.00 0.00 0.00 3.08
3641 5053 2.997897 GGGAGAGCGACAGGTGGT 60.998 66.667 0.00 0.00 0.00 4.16
3737 5169 0.035630 GTGGCTCCACTGAAGATGCT 60.036 55.000 11.61 0.00 43.12 3.79
3863 5296 2.943199 GCAGGGGAGAAGAAAGGACATG 60.943 54.545 0.00 0.00 0.00 3.21
3883 5316 2.228103 TGTGTACAGAGAGCCTTACACG 59.772 50.000 0.00 0.00 44.82 4.49
3888 5321 3.090037 ACAGAGAGCCTTACACGTATGT 58.910 45.455 0.00 0.00 43.30 2.29
3994 5427 1.073763 TGCAGCAGTGTTAAGGGTGAT 59.926 47.619 0.00 0.00 32.03 3.06
4104 5553 0.100325 TCGCTGTGCTGTGTTTTTGG 59.900 50.000 0.00 0.00 0.00 3.28
4105 5554 1.481819 CGCTGTGCTGTGTTTTTGGC 61.482 55.000 0.00 0.00 0.00 4.52
4106 5555 0.179103 GCTGTGCTGTGTTTTTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
4107 5556 1.740043 GCTGTGCTGTGTTTTTGGCTT 60.740 47.619 0.00 0.00 0.00 4.35
4108 5557 2.620242 CTGTGCTGTGTTTTTGGCTTT 58.380 42.857 0.00 0.00 0.00 3.51
4109 5558 3.002102 CTGTGCTGTGTTTTTGGCTTTT 58.998 40.909 0.00 0.00 0.00 2.27
4110 5559 3.406764 TGTGCTGTGTTTTTGGCTTTTT 58.593 36.364 0.00 0.00 0.00 1.94
4111 5560 3.188048 TGTGCTGTGTTTTTGGCTTTTTG 59.812 39.130 0.00 0.00 0.00 2.44
4112 5561 2.161211 TGCTGTGTTTTTGGCTTTTTGC 59.839 40.909 0.00 0.00 41.94 3.68
4113 5562 2.787382 GCTGTGTTTTTGGCTTTTTGCG 60.787 45.455 0.00 0.00 44.05 4.85
4114 5563 1.129437 TGTGTTTTTGGCTTTTTGCGC 59.871 42.857 0.00 0.00 44.05 6.09
4115 5564 1.129437 GTGTTTTTGGCTTTTTGCGCA 59.871 42.857 5.66 5.66 44.05 6.09
4118 5568 3.119708 TGTTTTTGGCTTTTTGCGCAAAT 60.120 34.783 33.94 0.00 44.05 2.32
4144 5594 7.609146 TCACAAACTGAAGCAGATCAATATTCT 59.391 33.333 0.82 0.00 35.18 2.40
4148 5598 5.759273 ACTGAAGCAGATCAATATTCTGAGC 59.241 40.000 7.02 0.00 42.63 4.26
4182 5632 6.159293 CCCTTTCCTGAAGAAAATTAACTGC 58.841 40.000 0.00 0.00 43.84 4.40
4204 5693 1.469079 GCAAAGTTTCTTGTGTGCGGT 60.469 47.619 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
253 254 6.013984 TCCGATCTAAACTAGACCAAAGGTTT 60.014 38.462 0.00 0.00 37.69 3.27
614 618 4.380233 GGTTTTCTCATGCAGGATCAAGTG 60.380 45.833 0.00 0.00 0.00 3.16
693 800 2.290641 GTGTGGGTTGTTGTGCTCTAAG 59.709 50.000 0.00 0.00 0.00 2.18
859 1814 9.895138 TTTGGTAGTATATCTTTTTCAGGTACC 57.105 33.333 2.73 2.73 0.00 3.34
889 1844 6.428465 TCCGTATTTTCTGCACAAACATCTTA 59.572 34.615 0.00 0.00 0.00 2.10
892 1847 5.041951 TCCGTATTTTCTGCACAAACATC 57.958 39.130 0.00 0.00 0.00 3.06
893 1848 4.082787 CCTCCGTATTTTCTGCACAAACAT 60.083 41.667 0.00 0.00 0.00 2.71
895 1850 3.365969 CCCTCCGTATTTTCTGCACAAAC 60.366 47.826 0.00 0.00 0.00 2.93
898 1853 1.626321 TCCCTCCGTATTTTCTGCACA 59.374 47.619 0.00 0.00 0.00 4.57
899 1854 2.280628 CTCCCTCCGTATTTTCTGCAC 58.719 52.381 0.00 0.00 0.00 4.57
901 1856 2.693267 ACTCCCTCCGTATTTTCTGC 57.307 50.000 0.00 0.00 0.00 4.26
902 1857 4.730949 TGTACTCCCTCCGTATTTTCTG 57.269 45.455 0.00 0.00 0.00 3.02
903 1858 4.776308 AGTTGTACTCCCTCCGTATTTTCT 59.224 41.667 0.00 0.00 0.00 2.52
907 1862 3.197116 CCAAGTTGTACTCCCTCCGTATT 59.803 47.826 1.45 0.00 0.00 1.89
908 1863 2.764572 CCAAGTTGTACTCCCTCCGTAT 59.235 50.000 1.45 0.00 0.00 3.06
909 1864 2.173519 CCAAGTTGTACTCCCTCCGTA 58.826 52.381 1.45 0.00 0.00 4.02
911 1866 1.263356 TCCAAGTTGTACTCCCTCCG 58.737 55.000 1.45 0.00 0.00 4.63
912 1867 3.782656 TTTCCAAGTTGTACTCCCTCC 57.217 47.619 1.45 0.00 0.00 4.30
914 1869 3.117663 TGCTTTTCCAAGTTGTACTCCCT 60.118 43.478 1.45 0.00 31.86 4.20
915 1870 3.004419 GTGCTTTTCCAAGTTGTACTCCC 59.996 47.826 1.45 0.00 31.86 4.30
918 1873 3.883489 GAGGTGCTTTTCCAAGTTGTACT 59.117 43.478 1.45 0.00 31.86 2.73
938 1912 2.279120 GGAGACGATGCGGCAGAG 60.279 66.667 9.25 7.38 37.34 3.35
939 1913 2.755876 AGGAGACGATGCGGCAGA 60.756 61.111 9.25 0.00 37.34 4.26
940 1914 2.279120 GAGGAGACGATGCGGCAG 60.279 66.667 9.25 0.00 37.34 4.85
941 1915 3.838271 GGAGGAGACGATGCGGCA 61.838 66.667 4.58 4.58 37.34 5.69
945 1919 1.439644 GAGTGGGAGGAGACGATGC 59.560 63.158 0.00 0.00 0.00 3.91
947 1921 0.748729 GACGAGTGGGAGGAGACGAT 60.749 60.000 0.00 0.00 0.00 3.73
956 1934 1.967535 CTGAGCAAGACGAGTGGGA 59.032 57.895 0.00 0.00 0.00 4.37
957 1935 1.739562 GCTGAGCAAGACGAGTGGG 60.740 63.158 0.00 0.00 0.00 4.61
975 1962 2.241880 GGTGTGTGGGTCGTGAACG 61.242 63.158 0.00 0.00 41.45 3.95
986 1977 2.652530 GCATGGCCTTGGTGTGTG 59.347 61.111 19.47 0.13 0.00 3.82
1224 2237 0.313987 GAAGTTTGTTCAAGGGGCGG 59.686 55.000 0.00 0.00 0.00 6.13
1276 2289 3.570212 AGGGCCGTTTCTGCAGGT 61.570 61.111 15.13 0.00 0.00 4.00
2192 3523 0.799917 CGTGACTGCATCTGGACTCG 60.800 60.000 0.00 0.00 0.00 4.18
2300 3631 1.200716 CATAAACAGCTGTGCCCTGTG 59.799 52.381 22.49 10.10 42.37 3.66
2513 3844 9.965824 GTATATTAAATGTGCAAACATTAGGCT 57.034 29.630 4.62 0.00 39.18 4.58
2543 3874 1.797025 GACTAGGCAATATCCACCGC 58.203 55.000 0.00 0.00 0.00 5.68
2668 3999 6.318900 AGAATCAACCCATCGTTAATCCTTTC 59.681 38.462 0.00 0.00 31.77 2.62
2677 4008 3.750371 TGAACAGAATCAACCCATCGTT 58.250 40.909 0.00 0.00 33.90 3.85
2686 4017 6.198778 CGCAACATTTCTTTGAACAGAATCAA 59.801 34.615 0.00 0.00 37.53 2.57
2769 4100 1.299541 CAGCAACAGTTCGTCCAGTT 58.700 50.000 0.00 0.00 0.00 3.16
2770 4101 1.160329 GCAGCAACAGTTCGTCCAGT 61.160 55.000 0.00 0.00 0.00 4.00
3041 4372 9.826574 TCATTATGGTGTAGGTAAAGACATTAC 57.173 33.333 0.00 0.00 42.68 1.89
3496 4860 2.095415 GGGCACGTTTGATTTGTACTCC 60.095 50.000 0.00 0.00 0.00 3.85
3538 4944 4.280929 GGATTCAGCTTTGTTTTGGTAGGT 59.719 41.667 0.00 0.00 0.00 3.08
3542 4948 4.751767 TTGGATTCAGCTTTGTTTTGGT 57.248 36.364 0.00 0.00 0.00 3.67
3641 5053 2.962569 CAGGAGTGAACGGCTCGA 59.037 61.111 1.50 0.00 34.00 4.04
3681 5113 1.667724 CTGGTTGACTCGATTCCATGC 59.332 52.381 0.00 0.00 0.00 4.06
3780 5213 4.606961 TGAAATTCAAAGTTGCCGAGAAC 58.393 39.130 0.00 0.00 0.00 3.01
3863 5296 2.228343 ACGTGTAAGGCTCTCTGTACAC 59.772 50.000 13.82 13.82 41.79 2.90
4109 5558 2.859526 TCAGTTTGTGATTTGCGCAA 57.140 40.000 21.02 21.02 44.71 4.85
4110 5559 2.730069 CTTCAGTTTGTGATTTGCGCA 58.270 42.857 5.66 5.66 34.17 6.09
4111 5560 1.453148 GCTTCAGTTTGTGATTTGCGC 59.547 47.619 0.00 0.00 34.17 6.09
4112 5561 2.722629 CTGCTTCAGTTTGTGATTTGCG 59.277 45.455 0.00 0.00 34.17 4.85
4113 5562 3.968649 TCTGCTTCAGTTTGTGATTTGC 58.031 40.909 0.00 0.00 34.17 3.68
4114 5563 5.765176 TGATCTGCTTCAGTTTGTGATTTG 58.235 37.500 0.00 0.00 34.17 2.32
4115 5564 6.395426 TTGATCTGCTTCAGTTTGTGATTT 57.605 33.333 0.00 0.00 34.17 2.17
4118 5568 7.609146 AGAATATTGATCTGCTTCAGTTTGTGA 59.391 33.333 0.00 0.00 32.61 3.58
4144 5594 1.143684 GAAAGGGGCCATATCAGCTCA 59.856 52.381 4.39 0.00 29.87 4.26
4148 5598 1.776667 TCAGGAAAGGGGCCATATCAG 59.223 52.381 4.39 0.00 0.00 2.90
4182 5632 1.847999 CGCACACAAGAAACTTTGCAG 59.152 47.619 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.