Multiple sequence alignment - TraesCS1B01G037900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G037900 chr1B 100.000 3314 0 0 3394 6707 17813407 17810094 0.000000e+00 6120.0
1 TraesCS1B01G037900 chr1B 100.000 2877 0 0 1 2877 17816800 17813924 0.000000e+00 5313.0
2 TraesCS1B01G037900 chr1B 94.205 1950 78 13 900 2842 8218513 8220434 0.000000e+00 2942.0
3 TraesCS1B01G037900 chr1B 94.996 1139 30 13 3995 5127 8221966 8223083 0.000000e+00 1762.0
4 TraesCS1B01G037900 chr1B 87.427 1201 96 26 3394 4548 8174018 8172827 0.000000e+00 1330.0
5 TraesCS1B01G037900 chr1B 90.895 659 39 13 5245 5893 8170670 8170023 0.000000e+00 865.0
6 TraesCS1B01G037900 chr1B 84.132 876 112 17 970 1840 629605856 629606709 0.000000e+00 822.0
7 TraesCS1B01G037900 chr1B 84.805 770 93 16 970 1730 7643494 7642740 0.000000e+00 752.0
8 TraesCS1B01G037900 chr1B 89.313 393 26 7 6090 6482 8169240 8168864 4.700000e-131 479.0
9 TraesCS1B01G037900 chr1B 94.137 307 17 1 4848 5154 8171132 8170827 3.660000e-127 466.0
10 TraesCS1B01G037900 chr1B 95.865 266 11 0 2577 2842 8174422 8174157 1.340000e-116 431.0
11 TraesCS1B01G037900 chr1B 94.907 216 5 3 3394 3606 8221755 8221967 3.880000e-87 333.0
12 TraesCS1B01G037900 chr1B 83.060 366 55 6 1052 1413 5708927 5709289 6.490000e-85 326.0
13 TraesCS1B01G037900 chr1B 85.397 315 42 4 1683 1996 7688986 7688675 2.330000e-84 324.0
14 TraesCS1B01G037900 chr1B 78.229 542 79 22 614 1133 7859685 7859161 1.820000e-80 311.0
15 TraesCS1B01G037900 chr1B 86.047 301 27 5 6182 6482 6216453 6216738 6.530000e-80 309.0
16 TraesCS1B01G037900 chr1B 79.455 477 63 25 1220 1663 6395807 6396281 8.450000e-79 305.0
17 TraesCS1B01G037900 chr1B 85.382 301 29 5 6182 6482 7459894 7460179 1.410000e-76 298.0
18 TraesCS1B01G037900 chr1B 84.615 286 34 8 4196 4472 8156407 8156123 6.630000e-70 276.0
19 TraesCS1B01G037900 chr1B 77.336 428 68 17 6110 6531 6297023 6297427 6.770000e-55 226.0
20 TraesCS1B01G037900 chr1B 94.928 138 7 0 1740 1877 6401723 6401860 4.070000e-52 217.0
21 TraesCS1B01G037900 chr1B 90.647 139 13 0 4605 4743 8171279 8171141 1.150000e-42 185.0
22 TraesCS1B01G037900 chr1B 81.026 195 15 12 6113 6297 6782629 6782447 1.170000e-27 135.0
23 TraesCS1B01G037900 chr1B 79.630 216 21 11 6090 6297 6587953 6587753 4.220000e-27 134.0
24 TraesCS1B01G037900 chr1B 75.958 287 45 16 6125 6405 6255122 6255390 7.060000e-25 126.0
25 TraesCS1B01G037900 chr1B 97.222 72 2 0 5908 5979 8169474 8169403 9.130000e-24 122.0
26 TraesCS1B01G037900 chr1B 96.053 76 2 1 6018 6092 61941954 61942029 9.130000e-24 122.0
27 TraesCS1B01G037900 chr1B 83.333 138 8 6 1 127 660485550 660485683 5.500000e-21 113.0
28 TraesCS1B01G037900 chr1B 87.500 72 6 3 4533 4603 8171385 8171316 5.580000e-11 80.5
29 TraesCS1B01G037900 chr1B 90.909 55 5 0 1781 1835 6402312 6402366 2.590000e-09 75.0
30 TraesCS1B01G037900 chr1B 85.507 69 6 3 5180 5247 8170821 8170756 1.210000e-07 69.4
31 TraesCS1B01G037900 chr1B 100.000 36 0 0 2842 2877 8174106 8174071 4.340000e-07 67.6
32 TraesCS1B01G037900 chr1B 81.928 83 7 3 5104 5182 17811619 17811697 5.620000e-06 63.9
33 TraesCS1B01G037900 chr1B 100.000 29 0 0 5154 5182 8170848 8170876 3.000000e-03 54.7
34 TraesCS1B01G037900 chr1A 92.995 2484 114 26 3420 5881 6572485 6570040 0.000000e+00 3568.0
35 TraesCS1B01G037900 chr1A 88.447 1307 92 23 236 1514 6636381 6635106 0.000000e+00 1522.0
36 TraesCS1B01G037900 chr1A 85.339 1371 118 34 1478 2842 6574237 6572944 0.000000e+00 1341.0
37 TraesCS1B01G037900 chr1A 86.333 1178 93 27 254 1396 6576097 6574953 0.000000e+00 1221.0
38 TraesCS1B01G037900 chr1A 87.276 1061 89 23 640 1694 6640837 6639817 0.000000e+00 1170.0
39 TraesCS1B01G037900 chr1A 89.104 826 75 9 1286 2105 6670165 6669349 0.000000e+00 1013.0
40 TraesCS1B01G037900 chr1A 82.363 584 80 13 329 907 6553526 6552961 2.810000e-133 486.0
41 TraesCS1B01G037900 chr1A 82.192 584 81 13 329 907 6539954 6539389 1.310000e-131 481.0
42 TraesCS1B01G037900 chr1A 88.804 393 28 6 6090 6482 6569221 6568845 1.020000e-127 468.0
43 TraesCS1B01G037900 chr1A 91.781 219 17 1 1347 1564 6539108 6538890 3.040000e-78 303.0
44 TraesCS1B01G037900 chr1A 91.781 219 17 1 1347 1564 6552677 6552459 3.040000e-78 303.0
45 TraesCS1B01G037900 chr1A 75.000 388 70 14 6140 6521 5554043 5553677 3.240000e-33 154.0
46 TraesCS1B01G037900 chr1A 74.093 386 71 14 6140 6521 6395188 6394828 1.520000e-26 132.0
47 TraesCS1B01G037900 chr1A 83.333 144 8 7 1 132 6576308 6576169 1.180000e-22 119.0
48 TraesCS1B01G037900 chr1A 96.774 62 2 0 71 132 6641441 6641380 3.310000e-18 104.0
49 TraesCS1B01G037900 chr1D 85.263 2626 211 61 254 2842 5410699 5408213 0.000000e+00 2543.0
50 TraesCS1B01G037900 chr1D 86.474 1767 147 49 3394 5094 5407850 5406110 0.000000e+00 1855.0
51 TraesCS1B01G037900 chr1D 83.274 562 60 19 3540 4078 5354316 5353766 2.810000e-133 486.0
52 TraesCS1B01G037900 chr1D 93.030 330 20 3 954 1282 8181009 8181336 4.700000e-131 479.0
53 TraesCS1B01G037900 chr1D 92.492 333 10 4 3684 4004 5393405 5393076 4.740000e-126 462.0
54 TraesCS1B01G037900 chr1D 81.111 630 70 18 970 1591 5013936 5013348 6.130000e-125 459.0
55 TraesCS1B01G037900 chr1D 88.525 366 34 6 5490 5855 5405829 5405472 2.870000e-118 436.0
56 TraesCS1B01G037900 chr1D 83.916 286 36 7 4196 4472 5353380 5353096 1.430000e-66 265.0
57 TraesCS1B01G037900 chr1D 81.089 349 42 14 1501 1840 5094163 5093830 2.400000e-64 257.0
58 TraesCS1B01G037900 chr1D 88.500 200 9 7 6090 6289 5404637 5404452 5.230000e-56 230.0
59 TraesCS1B01G037900 chr1D 88.276 145 12 1 6339 6483 5404444 5404305 1.160000e-37 169.0
60 TraesCS1B01G037900 chr1D 82.857 175 18 6 6476 6650 5404119 5403957 5.420000e-31 147.0
61 TraesCS1B01G037900 chr1D 85.366 123 17 1 1348 1469 5122021 5121899 7.060000e-25 126.0
62 TraesCS1B01G037900 chr1D 77.027 222 37 11 6111 6329 4999316 4999106 1.530000e-21 115.0
63 TraesCS1B01G037900 chr1D 93.056 72 5 0 5908 5979 4367790 4367719 9.200000e-19 106.0
64 TraesCS1B01G037900 chr1D 95.161 62 3 0 71 132 5410856 5410795 1.540000e-16 99.0
65 TraesCS1B01G037900 chr1D 92.982 57 4 0 5528 5584 5020446 5020390 4.310000e-12 84.2
66 TraesCS1B01G037900 chr7A 90.184 489 40 5 1621 2105 692235595 692235111 1.230000e-176 630.0
67 TraesCS1B01G037900 chrUn 82.230 574 79 13 329 897 333572679 333572124 2.190000e-129 473.0
68 TraesCS1B01G037900 chrUn 82.562 562 75 13 329 885 333618466 333619009 2.190000e-129 473.0
69 TraesCS1B01G037900 chrUn 82.562 562 75 13 329 885 390382166 390382709 2.190000e-129 473.0
70 TraesCS1B01G037900 chr4B 81.348 638 61 29 160 763 87231872 87232485 3.660000e-127 466.0
71 TraesCS1B01G037900 chr4B 96.053 76 2 1 6018 6092 115062792 115062717 9.130000e-24 122.0
72 TraesCS1B01G037900 chr4D 95.062 81 2 2 6018 6097 401095044 401095123 7.060000e-25 126.0
73 TraesCS1B01G037900 chr7B 96.053 76 2 1 6018 6092 743427217 743427292 9.130000e-24 122.0
74 TraesCS1B01G037900 chr5D 96.053 76 2 1 6018 6092 521523723 521523798 9.130000e-24 122.0
75 TraesCS1B01G037900 chr5B 93.902 82 3 2 6018 6098 71643722 71643802 9.130000e-24 122.0
76 TraesCS1B01G037900 chr5B 93.902 82 3 2 6018 6098 566119913 566119993 9.130000e-24 122.0
77 TraesCS1B01G037900 chr5A 94.937 79 3 1 6018 6095 510888128 510888050 9.130000e-24 122.0
78 TraesCS1B01G037900 chr2B 93.750 80 3 2 6018 6096 556199410 556199332 1.180000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G037900 chr1B 17810094 17816800 6706 True 5716.500000 6120 100.000000 1 6707 2 chr1B.!!$R8 6706
1 TraesCS1B01G037900 chr1B 8218513 8223083 4570 False 1679.000000 2942 94.702667 900 5127 3 chr1B.!!$F13 4227
2 TraesCS1B01G037900 chr1B 629605856 629606709 853 False 822.000000 822 84.132000 970 1840 1 chr1B.!!$F10 870
3 TraesCS1B01G037900 chr1B 7642740 7643494 754 True 752.000000 752 84.805000 970 1730 1 chr1B.!!$R3 760
4 TraesCS1B01G037900 chr1B 8168864 8174422 5558 True 409.550000 1330 91.851300 2577 6482 10 chr1B.!!$R7 3905
5 TraesCS1B01G037900 chr1B 7859161 7859685 524 True 311.000000 311 78.229000 614 1133 1 chr1B.!!$R5 519
6 TraesCS1B01G037900 chr1A 6568845 6576308 7463 True 1343.400000 3568 87.360800 1 6482 5 chr1A.!!$R6 6481
7 TraesCS1B01G037900 chr1A 6669349 6670165 816 True 1013.000000 1013 89.104000 1286 2105 1 chr1A.!!$R3 819
8 TraesCS1B01G037900 chr1A 6635106 6641441 6335 True 932.000000 1522 90.832333 71 1694 3 chr1A.!!$R7 1623
9 TraesCS1B01G037900 chr1A 6552459 6553526 1067 True 394.500000 486 87.072000 329 1564 2 chr1A.!!$R5 1235
10 TraesCS1B01G037900 chr1A 6538890 6539954 1064 True 392.000000 481 86.986500 329 1564 2 chr1A.!!$R4 1235
11 TraesCS1B01G037900 chr1D 5403957 5410856 6899 True 782.714286 2543 87.865143 71 6650 7 chr1D.!!$R9 6579
12 TraesCS1B01G037900 chr1D 5013348 5013936 588 True 459.000000 459 81.111000 970 1591 1 chr1D.!!$R3 621
13 TraesCS1B01G037900 chr1D 5353096 5354316 1220 True 375.500000 486 83.595000 3540 4472 2 chr1D.!!$R8 932
14 TraesCS1B01G037900 chrUn 333572124 333572679 555 True 473.000000 473 82.230000 329 897 1 chrUn.!!$R1 568
15 TraesCS1B01G037900 chrUn 333618466 333619009 543 False 473.000000 473 82.562000 329 885 1 chrUn.!!$F1 556
16 TraesCS1B01G037900 chrUn 390382166 390382709 543 False 473.000000 473 82.562000 329 885 1 chrUn.!!$F2 556
17 TraesCS1B01G037900 chr4B 87231872 87232485 613 False 466.000000 466 81.348000 160 763 1 chr4B.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 161 0.108233 GGCAGAAGAGAGAGCCACAG 60.108 60.000 0.0 0.0 46.26 3.66 F
384 449 0.530870 GGCGACAGTGGAGGATTAGC 60.531 60.000 0.0 0.0 0.00 3.09 F
1091 1375 1.142748 GACCACGCTCTCCTGATGG 59.857 63.158 0.0 0.0 36.46 3.51 F
1092 1376 1.608717 GACCACGCTCTCCTGATGGT 61.609 60.000 0.0 0.0 46.37 3.55 F
2438 3449 1.686355 TTTCCACAATCCACAACGCT 58.314 45.000 0.0 0.0 0.00 5.07 F
2443 3454 2.487762 CCACAATCCACAACGCTTATGT 59.512 45.455 0.0 0.0 0.00 2.29 F
2616 3652 2.857186 TCATCTGGTTAGCACTGCAA 57.143 45.000 3.3 0.0 0.00 4.08 F
4430 6996 3.192844 TCACCTAGAGCTGGTAAGTTTCG 59.807 47.826 0.0 0.0 35.80 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2867 0.179000 CTAGTGTGTCCATCCAGGGC 59.821 60.000 0.00 0.00 44.53 5.19 R
1942 2942 2.986492 GGTGTCAGCTAGGTACCCA 58.014 57.895 8.74 0.00 0.00 4.51 R
2616 3652 0.185901 AACTGTCCCAGCAATGGTGT 59.814 50.000 11.69 0.00 34.37 4.16 R
3601 5512 5.926542 GTCCTTCACGCTGCTATATAATTGA 59.073 40.000 0.00 0.00 0.00 2.57 R
4773 8843 1.214923 TGGAGCCATGGCATGTGAATA 59.785 47.619 37.18 12.26 44.88 1.75 R
4855 8944 7.119699 CAGACAGTAAGCATGATTGGTTAAGAA 59.880 37.037 6.43 0.00 44.82 2.52 R
4993 9082 1.318576 ACCAAGGAACAGAAAAGCCG 58.681 50.000 0.00 0.00 0.00 5.52 R
6198 11199 0.095245 GAATCCATGTCACACGCACG 59.905 55.000 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 0.535328 TGAGAGCGAGGAGATACGGG 60.535 60.000 0.00 0.00 0.00 5.28
142 154 4.135153 GGCGCGGCAGAAGAGAGA 62.135 66.667 29.32 0.00 0.00 3.10
143 155 2.581953 GCGCGGCAGAAGAGAGAG 60.582 66.667 8.83 0.00 0.00 3.20
144 156 2.581953 CGCGGCAGAAGAGAGAGC 60.582 66.667 0.00 0.00 0.00 4.09
145 157 2.202864 GCGGCAGAAGAGAGAGCC 60.203 66.667 0.00 0.00 43.61 4.70
147 159 4.930592 GGCAGAAGAGAGAGCCAC 57.069 61.111 0.00 0.00 46.26 5.01
148 160 1.978473 GGCAGAAGAGAGAGCCACA 59.022 57.895 0.00 0.00 46.26 4.17
149 161 0.108233 GGCAGAAGAGAGAGCCACAG 60.108 60.000 0.00 0.00 46.26 3.66
150 162 0.894141 GCAGAAGAGAGAGCCACAGA 59.106 55.000 0.00 0.00 0.00 3.41
151 163 1.135024 GCAGAAGAGAGAGCCACAGAG 60.135 57.143 0.00 0.00 0.00 3.35
152 164 1.477700 CAGAAGAGAGAGCCACAGAGG 59.522 57.143 0.00 0.00 41.84 3.69
176 188 1.883084 CGGCTGCGACCAGGTTATC 60.883 63.158 0.00 0.00 39.54 1.75
181 193 1.414181 CTGCGACCAGGTTATCCATCT 59.586 52.381 0.00 0.00 35.38 2.90
183 195 2.364324 TGCGACCAGGTTATCCATCTAC 59.636 50.000 0.00 0.00 35.89 2.59
208 220 0.803117 CTCTGTCCGTCAGTTAGCGA 59.197 55.000 0.00 0.00 43.97 4.93
209 221 1.199327 CTCTGTCCGTCAGTTAGCGAA 59.801 52.381 0.00 0.00 43.97 4.70
210 222 1.816835 TCTGTCCGTCAGTTAGCGAAT 59.183 47.619 0.00 0.00 43.97 3.34
212 224 1.278238 GTCCGTCAGTTAGCGAATGG 58.722 55.000 0.00 0.00 0.00 3.16
217 229 3.065786 CCGTCAGTTAGCGAATGGTACTA 59.934 47.826 0.00 0.00 0.00 1.82
218 230 4.033684 CGTCAGTTAGCGAATGGTACTAC 58.966 47.826 0.00 0.00 0.00 2.73
219 231 4.201891 CGTCAGTTAGCGAATGGTACTACT 60.202 45.833 0.00 0.00 0.00 2.57
220 232 5.648572 GTCAGTTAGCGAATGGTACTACTT 58.351 41.667 0.00 0.00 0.00 2.24
221 233 5.515626 GTCAGTTAGCGAATGGTACTACTTG 59.484 44.000 0.00 0.00 0.00 3.16
222 234 5.184479 TCAGTTAGCGAATGGTACTACTTGT 59.816 40.000 0.00 0.00 0.00 3.16
244 256 6.768483 TGTACTGGTTGTATGGATGGATATG 58.232 40.000 0.00 0.00 33.23 1.78
268 290 4.405548 AGCTGCAGAGAGGAAATTCTTTT 58.594 39.130 20.43 0.00 0.00 2.27
273 295 5.159925 GCAGAGAGGAAATTCTTTTTCTGC 58.840 41.667 20.54 20.54 35.53 4.26
315 363 2.069273 CGTTCCTGTACTTTGCCTCTG 58.931 52.381 0.00 0.00 0.00 3.35
321 369 2.221169 TGTACTTTGCCTCTGCTTGTG 58.779 47.619 0.00 0.00 38.71 3.33
325 385 2.816087 ACTTTGCCTCTGCTTGTGTATG 59.184 45.455 0.00 0.00 38.71 2.39
327 387 0.983467 TGCCTCTGCTTGTGTATGGA 59.017 50.000 0.00 0.00 38.71 3.41
347 407 3.545703 GATGGATTGGTGGAGAAATCGT 58.454 45.455 0.00 0.00 34.28 3.73
349 409 3.081061 TGGATTGGTGGAGAAATCGTTG 58.919 45.455 0.00 0.00 34.28 4.10
369 429 1.186917 TTTCTTCGTGGGTAGGGCGA 61.187 55.000 0.00 0.00 0.00 5.54
384 449 0.530870 GGCGACAGTGGAGGATTAGC 60.531 60.000 0.00 0.00 0.00 3.09
446 511 4.530161 AGGAGTAGATTGAGTGCTCTGTTT 59.470 41.667 0.00 0.00 0.00 2.83
447 512 4.629200 GGAGTAGATTGAGTGCTCTGTTTG 59.371 45.833 0.00 0.00 0.00 2.93
448 513 3.999663 AGTAGATTGAGTGCTCTGTTTGC 59.000 43.478 0.00 0.00 0.00 3.68
547 796 6.904954 ATACGTACGAGTTTTGCAAAATTG 57.095 33.333 26.24 19.89 0.00 2.32
580 830 3.193479 GCAAAGTGATAGTTTCCCCCTTG 59.807 47.826 0.00 0.00 0.00 3.61
633 894 5.523438 AGACTGCAGGAAGCTTATACTAC 57.477 43.478 19.93 0.00 45.94 2.73
634 895 5.205056 AGACTGCAGGAAGCTTATACTACT 58.795 41.667 19.93 0.00 45.94 2.57
635 896 6.366340 AGACTGCAGGAAGCTTATACTACTA 58.634 40.000 19.93 0.00 45.94 1.82
652 914 3.252974 ACTAGGGAATTTCAGTGAGCG 57.747 47.619 0.00 0.00 0.00 5.03
738 1008 7.388776 TCATTCTAGTTCAGTTCAAATGAGTGG 59.611 37.037 0.00 0.00 30.53 4.00
746 1016 3.822735 AGTTCAAATGAGTGGGTGTGATG 59.177 43.478 0.00 0.00 0.00 3.07
781 1052 9.883142 ATCTCAGTTTTTCCTTAGTATTCTGAG 57.117 33.333 10.77 10.77 44.05 3.35
855 1138 2.224523 CCCTCTGACTGCAGGTGTTTTA 60.225 50.000 19.93 0.00 42.53 1.52
898 1181 1.601903 CAGTCTTACCGTTTTGCTGCA 59.398 47.619 0.00 0.00 0.00 4.41
963 1247 2.559440 GCTCCTGATTGGACAGACATC 58.441 52.381 0.00 0.00 40.56 3.06
965 1249 3.740764 GCTCCTGATTGGACAGACATCTC 60.741 52.174 0.00 0.00 40.56 2.75
1091 1375 1.142748 GACCACGCTCTCCTGATGG 59.857 63.158 0.00 0.00 36.46 3.51
1092 1376 1.608717 GACCACGCTCTCCTGATGGT 61.609 60.000 0.00 0.00 46.37 3.55
1159 1443 2.952310 GGTTTGCCACTTTCTCTGTCTT 59.048 45.455 0.00 0.00 34.09 3.01
1200 1485 4.890088 AGAGTAAATTACACGCTGGTCAA 58.110 39.130 5.89 0.00 0.00 3.18
1209 1495 3.472652 ACACGCTGGTCAATAAACTTGA 58.527 40.909 0.00 0.00 0.00 3.02
1441 2419 8.712285 TGCTGTAGTAGTTCATTTGGTTATAC 57.288 34.615 0.00 0.00 0.00 1.47
1598 2598 2.202623 CTCTCCCGTTCGCTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
1844 2844 2.281070 CGTCCTGTGGCTTGCTGT 60.281 61.111 0.00 0.00 0.00 4.40
1867 2867 6.377996 TGTGAAATTGGGAACATGATTAGAGG 59.622 38.462 0.00 0.00 42.32 3.69
1942 2942 3.144506 CAAATGTGCAAGTCAGGAGAGT 58.855 45.455 0.00 0.00 0.00 3.24
2004 3006 7.378181 ACCTTTCAACATAATTTGCAACCTAG 58.622 34.615 0.00 0.00 0.00 3.02
2020 3025 7.903145 TGCAACCTAGTTTTAGATCACTTCTA 58.097 34.615 0.00 0.00 35.79 2.10
2248 3254 6.098409 CAGTTCCCAAAGCTAGAGAAGGTATA 59.902 42.308 0.00 0.00 33.87 1.47
2260 3266 6.924913 AGAGAAGGTATATGCATGCTCTAA 57.075 37.500 20.33 0.00 30.37 2.10
2261 3267 7.493499 AGAGAAGGTATATGCATGCTCTAAT 57.507 36.000 20.33 6.35 30.37 1.73
2262 3268 7.915930 AGAGAAGGTATATGCATGCTCTAATT 58.084 34.615 20.33 5.12 30.37 1.40
2263 3269 7.823310 AGAGAAGGTATATGCATGCTCTAATTG 59.177 37.037 20.33 0.00 30.37 2.32
2264 3270 7.456725 AGAAGGTATATGCATGCTCTAATTGT 58.543 34.615 20.33 1.25 0.00 2.71
2435 3446 5.841810 TGAATCTTTTCCACAATCCACAAC 58.158 37.500 0.00 0.00 0.00 3.32
2438 3449 1.686355 TTTCCACAATCCACAACGCT 58.314 45.000 0.00 0.00 0.00 5.07
2439 3450 1.686355 TTCCACAATCCACAACGCTT 58.314 45.000 0.00 0.00 0.00 4.68
2440 3451 2.552599 TCCACAATCCACAACGCTTA 57.447 45.000 0.00 0.00 0.00 3.09
2441 3452 3.066291 TCCACAATCCACAACGCTTAT 57.934 42.857 0.00 0.00 0.00 1.73
2442 3453 2.746904 TCCACAATCCACAACGCTTATG 59.253 45.455 0.00 0.00 0.00 1.90
2443 3454 2.487762 CCACAATCCACAACGCTTATGT 59.512 45.455 0.00 0.00 0.00 2.29
2444 3455 3.687212 CCACAATCCACAACGCTTATGTA 59.313 43.478 0.00 0.00 0.00 2.29
2445 3456 4.335315 CCACAATCCACAACGCTTATGTAT 59.665 41.667 0.00 0.00 0.00 2.29
2446 3457 5.265477 CACAATCCACAACGCTTATGTATG 58.735 41.667 0.00 0.00 0.00 2.39
2447 3458 5.064579 CACAATCCACAACGCTTATGTATGA 59.935 40.000 0.00 0.00 0.00 2.15
2448 3459 5.822519 ACAATCCACAACGCTTATGTATGAT 59.177 36.000 0.00 0.00 0.00 2.45
2449 3460 5.929697 ATCCACAACGCTTATGTATGATG 57.070 39.130 0.00 0.00 0.00 3.07
2450 3461 4.765273 TCCACAACGCTTATGTATGATGT 58.235 39.130 0.00 0.00 0.00 3.06
2451 3462 4.570369 TCCACAACGCTTATGTATGATGTG 59.430 41.667 0.00 0.00 37.31 3.21
2452 3463 4.332543 CCACAACGCTTATGTATGATGTGT 59.667 41.667 0.00 0.00 36.17 3.72
2453 3464 5.257864 CACAACGCTTATGTATGATGTGTG 58.742 41.667 0.00 0.00 33.93 3.82
2454 3465 5.063312 CACAACGCTTATGTATGATGTGTGA 59.937 40.000 0.00 0.00 33.93 3.58
2455 3466 5.641636 ACAACGCTTATGTATGATGTGTGAA 59.358 36.000 0.00 0.00 0.00 3.18
2456 3467 6.316140 ACAACGCTTATGTATGATGTGTGAAT 59.684 34.615 0.00 0.00 0.00 2.57
2457 3468 6.925610 ACGCTTATGTATGATGTGTGAATT 57.074 33.333 0.00 0.00 0.00 2.17
2458 3469 7.320443 ACGCTTATGTATGATGTGTGAATTT 57.680 32.000 0.00 0.00 0.00 1.82
2459 3470 8.432110 ACGCTTATGTATGATGTGTGAATTTA 57.568 30.769 0.00 0.00 0.00 1.40
2460 3471 8.551205 ACGCTTATGTATGATGTGTGAATTTAG 58.449 33.333 0.00 0.00 0.00 1.85
2461 3472 8.764287 CGCTTATGTATGATGTGTGAATTTAGA 58.236 33.333 0.00 0.00 0.00 2.10
2616 3652 2.857186 TCATCTGGTTAGCACTGCAA 57.143 45.000 3.30 0.00 0.00 4.08
3601 5512 5.133221 ACACAGCCTTTCATTTTACAGTCT 58.867 37.500 0.00 0.00 0.00 3.24
3607 5518 8.514594 CAGCCTTTCATTTTACAGTCTCAATTA 58.485 33.333 0.00 0.00 0.00 1.40
4156 6654 5.128663 ACCTTGTTTAACAAACCAAGCTCAT 59.871 36.000 11.80 0.00 37.69 2.90
4184 6682 6.594788 ACTGAACTGCAAATTTACCATCAT 57.405 33.333 0.00 0.00 0.00 2.45
4185 6683 7.701539 ACTGAACTGCAAATTTACCATCATA 57.298 32.000 0.00 0.00 0.00 2.15
4271 6835 7.534085 TTCGTACTACAAGCTTTAATGGATG 57.466 36.000 0.00 0.00 0.00 3.51
4399 6965 3.591023 TCTGCGTTCGAAATTGGATGTA 58.409 40.909 0.00 0.00 0.00 2.29
4430 6996 3.192844 TCACCTAGAGCTGGTAAGTTTCG 59.807 47.826 0.00 0.00 35.80 3.46
4472 7045 5.181748 AGTGTTGATCCTGCAGAATTCTAC 58.818 41.667 17.39 14.95 0.00 2.59
4650 8720 4.261031 GGCTTTTCACGTCTTCTGCTTTTA 60.261 41.667 0.00 0.00 0.00 1.52
4771 8841 4.647611 TCGTTATCATGGGTGTTTCTGTT 58.352 39.130 0.00 0.00 0.00 3.16
4772 8842 4.454161 TCGTTATCATGGGTGTTTCTGTTG 59.546 41.667 0.00 0.00 0.00 3.33
4773 8843 4.215399 CGTTATCATGGGTGTTTCTGTTGT 59.785 41.667 0.00 0.00 0.00 3.32
4879 8968 6.985188 TCTTAACCAATCATGCTTACTGTC 57.015 37.500 0.00 0.00 0.00 3.51
4993 9082 0.908198 ATCCCAGGTCTGCACTTCTC 59.092 55.000 0.00 0.00 0.00 2.87
5151 9243 1.352687 TGCCTGCAAGTTGGGTACATA 59.647 47.619 4.75 0.00 0.00 2.29
5154 9246 4.141274 TGCCTGCAAGTTGGGTACATATAT 60.141 41.667 4.75 0.00 0.00 0.86
5156 9248 5.643777 GCCTGCAAGTTGGGTACATATATAG 59.356 44.000 4.75 0.00 0.00 1.31
5157 9249 6.173339 CCTGCAAGTTGGGTACATATATAGG 58.827 44.000 4.75 0.00 0.00 2.57
5158 9250 6.121776 TGCAAGTTGGGTACATATATAGGG 57.878 41.667 4.75 0.00 0.00 3.53
5159 9251 5.847265 TGCAAGTTGGGTACATATATAGGGA 59.153 40.000 4.75 0.00 0.00 4.20
5162 9254 7.386851 CAAGTTGGGTACATATATAGGGACAG 58.613 42.308 11.69 0.00 0.00 3.51
5163 9255 6.871035 AGTTGGGTACATATATAGGGACAGA 58.129 40.000 11.69 0.00 0.00 3.41
5166 9258 4.338682 GGGTACATATATAGGGACAGAGCG 59.661 50.000 11.69 0.00 0.00 5.03
5167 9259 4.202030 GGTACATATATAGGGACAGAGCGC 60.202 50.000 11.69 0.00 0.00 5.92
5169 9261 3.832490 ACATATATAGGGACAGAGCGCAA 59.168 43.478 11.47 0.00 0.00 4.85
5170 9262 4.467795 ACATATATAGGGACAGAGCGCAAT 59.532 41.667 11.47 0.00 0.00 3.56
5172 9264 2.717639 ATAGGGACAGAGCGCAATTT 57.282 45.000 11.47 0.00 0.00 1.82
5174 9266 2.029838 AGGGACAGAGCGCAATTTAG 57.970 50.000 11.47 0.00 0.00 1.85
5176 9268 1.666189 GGGACAGAGCGCAATTTAGTC 59.334 52.381 11.47 8.47 0.00 2.59
5178 9270 3.003480 GGACAGAGCGCAATTTAGTCTT 58.997 45.455 11.47 0.00 0.00 3.01
5233 9325 2.684927 GCCCATGAACTTGCATAGGTCT 60.685 50.000 12.94 0.30 41.45 3.85
5234 9326 2.947652 CCCATGAACTTGCATAGGTCTG 59.052 50.000 12.94 9.36 41.45 3.51
5243 9335 4.080356 ACTTGCATAGGTCTGGCAAATAGA 60.080 41.667 11.15 0.00 45.78 1.98
5369 9549 2.684001 TGGGACCATGAACGATGTAC 57.316 50.000 0.00 0.00 0.00 2.90
5374 9554 3.865745 GGACCATGAACGATGTACTTCAG 59.134 47.826 9.22 4.78 30.04 3.02
5380 9560 5.400066 TGAACGATGTACTTCAGGAATGA 57.600 39.130 9.22 0.00 0.00 2.57
5451 9642 6.350277 CGGGTTATTCTAGATGGGCTACTAAG 60.350 46.154 0.00 0.00 0.00 2.18
5542 9733 6.241645 AGGAAGGAAGTTCTTTCATTACTGG 58.758 40.000 24.20 0.00 46.23 4.00
5543 9734 5.416013 GGAAGGAAGTTCTTTCATTACTGGG 59.584 44.000 24.20 0.00 39.70 4.45
5653 9844 0.608130 TCTGATTGGGTCTGGTCACG 59.392 55.000 0.00 0.00 0.00 4.35
5692 9883 2.434185 CCGGCTTACTTGCTCGCA 60.434 61.111 0.00 0.00 0.00 5.10
5726 9917 4.832248 TGATAGACACACCTTTGGATCAC 58.168 43.478 0.00 0.00 0.00 3.06
5728 9919 3.131709 AGACACACCTTTGGATCACAG 57.868 47.619 0.00 0.00 0.00 3.66
5729 9920 1.537202 GACACACCTTTGGATCACAGC 59.463 52.381 0.00 0.00 0.00 4.40
5733 9924 3.068590 CACACCTTTGGATCACAGCTTTT 59.931 43.478 0.00 0.00 0.00 2.27
5746 9937 5.821204 TCACAGCTTTTTCTTAGCAGTTTC 58.179 37.500 0.00 0.00 41.11 2.78
5748 9939 4.644685 ACAGCTTTTTCTTAGCAGTTTCCA 59.355 37.500 0.00 0.00 41.11 3.53
5778 9969 8.602424 TCTTCAGATAAGAACACCATTTTCCTA 58.398 33.333 0.00 0.00 0.00 2.94
5817 10008 9.574516 AAAGTAGTCAGAGTTTATTTGATTGGT 57.425 29.630 0.00 0.00 0.00 3.67
5818 10009 9.574516 AAGTAGTCAGAGTTTATTTGATTGGTT 57.425 29.630 0.00 0.00 0.00 3.67
5819 10010 9.220767 AGTAGTCAGAGTTTATTTGATTGGTTC 57.779 33.333 0.00 0.00 0.00 3.62
5855 10046 8.534496 TCTTTAAGGTCAATTAGTAGGGTGTAC 58.466 37.037 0.00 0.00 0.00 2.90
5906 10551 2.879103 TCTTGAAAGGGAGCCGAAAT 57.121 45.000 0.00 0.00 0.00 2.17
5921 10689 8.665685 GGGAGCCGAAATATGTATATTAAGTTG 58.334 37.037 0.00 0.00 32.91 3.16
6013 11008 2.352960 GTCACATCATTCGGCTTCCTTC 59.647 50.000 0.00 0.00 0.00 3.46
6014 11009 1.672881 CACATCATTCGGCTTCCTTCC 59.327 52.381 0.00 0.00 0.00 3.46
6016 11011 2.025887 ACATCATTCGGCTTCCTTCCTT 60.026 45.455 0.00 0.00 0.00 3.36
6017 11012 3.199946 ACATCATTCGGCTTCCTTCCTTA 59.800 43.478 0.00 0.00 0.00 2.69
6021 11016 2.710096 TCGGCTTCCTTCCTTAATGG 57.290 50.000 0.00 0.00 37.10 3.16
6024 11019 2.618045 CGGCTTCCTTCCTTAATGGTGT 60.618 50.000 0.00 0.00 37.07 4.16
6026 11021 4.686122 CGGCTTCCTTCCTTAATGGTGTAT 60.686 45.833 0.00 0.00 37.07 2.29
6028 11023 5.398012 GGCTTCCTTCCTTAATGGTGTATCT 60.398 44.000 0.00 0.00 37.07 1.98
6030 11025 6.706716 GCTTCCTTCCTTAATGGTGTATCTAC 59.293 42.308 0.00 0.00 37.07 2.59
6031 11026 7.635089 GCTTCCTTCCTTAATGGTGTATCTACA 60.635 40.741 0.00 0.00 37.07 2.74
6033 11028 7.562135 TCCTTCCTTAATGGTGTATCTACAAC 58.438 38.462 0.00 0.00 44.02 3.32
6035 11030 8.701895 CCTTCCTTAATGGTGTATCTACAACTA 58.298 37.037 6.92 0.00 44.09 2.24
6081 11076 5.585500 TTTTGGACGAGTAATTCTGAACG 57.415 39.130 0.00 0.00 0.00 3.95
6082 11077 3.226346 TGGACGAGTAATTCTGAACGG 57.774 47.619 0.00 0.00 0.00 4.44
6083 11078 2.821378 TGGACGAGTAATTCTGAACGGA 59.179 45.455 0.00 0.00 0.00 4.69
6084 11079 3.119602 TGGACGAGTAATTCTGAACGGAG 60.120 47.826 0.00 0.00 0.00 4.63
6085 11080 3.436496 GACGAGTAATTCTGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
6086 11081 2.165845 ACGAGTAATTCTGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
6087 11082 2.426024 CGAGTAATTCTGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
6088 11083 3.489398 CGAGTAATTCTGAACGGAGGGAG 60.489 52.174 0.00 0.00 0.00 4.30
6111 11106 7.282224 GGAGTACCATGCTCACACAAATTATTA 59.718 37.037 1.93 0.00 34.83 0.98
6138 11133 5.407407 TGTCCTCCTAAAAAGAGCTAGTG 57.593 43.478 0.00 0.00 0.00 2.74
6147 11142 6.147985 CCTAAAAAGAGCTAGTGACAAAGACC 59.852 42.308 0.00 0.00 0.00 3.85
6195 11196 2.954318 CCCATGCCTAAGGATGTCAAAG 59.046 50.000 0.00 0.00 0.00 2.77
6196 11197 3.624777 CCATGCCTAAGGATGTCAAAGT 58.375 45.455 0.00 0.00 0.00 2.66
6197 11198 3.629398 CCATGCCTAAGGATGTCAAAGTC 59.371 47.826 0.00 0.00 0.00 3.01
6198 11199 3.350219 TGCCTAAGGATGTCAAAGTCC 57.650 47.619 0.00 0.00 34.64 3.85
6304 11309 0.321671 TCAAGGAGGTGAGGCGAAAG 59.678 55.000 0.00 0.00 0.00 2.62
6309 11314 1.549170 GGAGGTGAGGCGAAAGTAAGA 59.451 52.381 0.00 0.00 0.00 2.10
6332 13726 6.491403 AGATGAAAGTAACCAGCAATGTCTTT 59.509 34.615 0.00 0.00 0.00 2.52
6333 13727 6.463995 TGAAAGTAACCAGCAATGTCTTTT 57.536 33.333 0.00 0.00 0.00 2.27
6334 13728 6.872920 TGAAAGTAACCAGCAATGTCTTTTT 58.127 32.000 0.00 0.00 0.00 1.94
6422 13816 7.721402 ACTAGAATAGAATTGAGAGTTGCGAT 58.279 34.615 0.00 0.00 42.77 4.58
6426 13820 4.462508 AGAATTGAGAGTTGCGATGAGA 57.537 40.909 0.00 0.00 0.00 3.27
6430 13824 2.897436 TGAGAGTTGCGATGAGATTGG 58.103 47.619 0.00 0.00 0.00 3.16
6437 13831 1.412710 TGCGATGAGATTGGTACCCTC 59.587 52.381 10.07 9.51 0.00 4.30
6439 13833 2.546795 GCGATGAGATTGGTACCCTCAG 60.547 54.545 19.89 11.42 39.89 3.35
6452 13846 1.513158 CCTCAGTGGTGTAGGAGCG 59.487 63.158 0.00 0.00 31.64 5.03
6484 14229 5.936956 GTGAGTTGGACATGAAGAGAGAAAT 59.063 40.000 0.00 0.00 0.00 2.17
6489 14234 5.975282 TGGACATGAAGAGAGAAATGAGAG 58.025 41.667 0.00 0.00 0.00 3.20
6490 14235 5.718607 TGGACATGAAGAGAGAAATGAGAGA 59.281 40.000 0.00 0.00 0.00 3.10
6496 14241 5.011431 TGAAGAGAGAAATGAGAGAGCAACA 59.989 40.000 0.00 0.00 0.00 3.33
6533 14278 9.753674 TGTTAATTTTACTCCTCCAGATTTCAT 57.246 29.630 0.00 0.00 0.00 2.57
6543 14288 5.012239 CCTCCAGATTTCATCAAGACCAAA 58.988 41.667 0.00 0.00 0.00 3.28
6546 14291 6.748132 TCCAGATTTCATCAAGACCAAAAAC 58.252 36.000 0.00 0.00 0.00 2.43
6547 14292 6.550854 TCCAGATTTCATCAAGACCAAAAACT 59.449 34.615 0.00 0.00 0.00 2.66
6589 14334 4.624125 GCAACCTAGGCTCATGTACTCTTT 60.624 45.833 9.30 0.00 0.00 2.52
6595 14340 7.125811 ACCTAGGCTCATGTACTCTTTTCATTA 59.874 37.037 9.30 0.00 0.00 1.90
6596 14341 7.655328 CCTAGGCTCATGTACTCTTTTCATTAG 59.345 40.741 0.00 0.00 0.00 1.73
6600 14345 8.897752 GGCTCATGTACTCTTTTCATTAGAAAT 58.102 33.333 0.00 0.00 42.90 2.17
6636 14381 3.618690 ACTAATGGAGCACCTGTCTTC 57.381 47.619 0.71 0.00 37.04 2.87
6646 14391 2.353605 GCACCTGTCTTCTCTCTCCTTG 60.354 54.545 0.00 0.00 0.00 3.61
6650 14395 4.202631 ACCTGTCTTCTCTCTCCTTGTACT 60.203 45.833 0.00 0.00 0.00 2.73
6651 14396 4.398044 CCTGTCTTCTCTCTCCTTGTACTC 59.602 50.000 0.00 0.00 0.00 2.59
6652 14397 4.337145 TGTCTTCTCTCTCCTTGTACTCC 58.663 47.826 0.00 0.00 0.00 3.85
6653 14398 4.043561 TGTCTTCTCTCTCCTTGTACTCCT 59.956 45.833 0.00 0.00 0.00 3.69
6654 14399 5.251005 TGTCTTCTCTCTCCTTGTACTCCTA 59.749 44.000 0.00 0.00 0.00 2.94
6655 14400 5.587443 GTCTTCTCTCTCCTTGTACTCCTAC 59.413 48.000 0.00 0.00 0.00 3.18
6656 14401 4.506937 TCTCTCTCCTTGTACTCCTACC 57.493 50.000 0.00 0.00 0.00 3.18
6657 14402 4.113085 TCTCTCTCCTTGTACTCCTACCT 58.887 47.826 0.00 0.00 0.00 3.08
6658 14403 4.164604 TCTCTCTCCTTGTACTCCTACCTC 59.835 50.000 0.00 0.00 0.00 3.85
6659 14404 3.118334 TCTCTCCTTGTACTCCTACCTCG 60.118 52.174 0.00 0.00 0.00 4.63
6660 14405 2.842496 TCTCCTTGTACTCCTACCTCGA 59.158 50.000 0.00 0.00 0.00 4.04
6661 14406 3.458857 TCTCCTTGTACTCCTACCTCGAT 59.541 47.826 0.00 0.00 0.00 3.59
6662 14407 3.552875 TCCTTGTACTCCTACCTCGATG 58.447 50.000 0.00 0.00 0.00 3.84
6663 14408 2.623889 CCTTGTACTCCTACCTCGATGG 59.376 54.545 0.00 0.00 42.93 3.51
6664 14409 3.552875 CTTGTACTCCTACCTCGATGGA 58.447 50.000 7.76 2.88 39.71 3.41
6665 14410 3.878237 TGTACTCCTACCTCGATGGAT 57.122 47.619 7.76 0.00 39.71 3.41
6666 14411 4.180377 TGTACTCCTACCTCGATGGATT 57.820 45.455 7.76 1.27 39.71 3.01
6667 14412 5.314718 TGTACTCCTACCTCGATGGATTA 57.685 43.478 7.76 0.47 39.71 1.75
6668 14413 5.068636 TGTACTCCTACCTCGATGGATTAC 58.931 45.833 7.76 10.83 39.71 1.89
6669 14414 4.456662 ACTCCTACCTCGATGGATTACT 57.543 45.455 7.76 0.00 39.71 2.24
6670 14415 4.805744 ACTCCTACCTCGATGGATTACTT 58.194 43.478 7.76 0.00 39.71 2.24
6671 14416 4.828387 ACTCCTACCTCGATGGATTACTTC 59.172 45.833 7.76 0.00 39.71 3.01
6672 14417 5.063017 TCCTACCTCGATGGATTACTTCT 57.937 43.478 7.76 0.00 39.71 2.85
6673 14418 5.071370 TCCTACCTCGATGGATTACTTCTC 58.929 45.833 7.76 0.00 39.71 2.87
6674 14419 3.992260 ACCTCGATGGATTACTTCTCG 57.008 47.619 7.76 0.00 39.71 4.04
6675 14420 3.288964 ACCTCGATGGATTACTTCTCGT 58.711 45.455 7.76 0.00 39.71 4.18
6676 14421 3.315749 ACCTCGATGGATTACTTCTCGTC 59.684 47.826 7.76 0.00 39.71 4.20
6677 14422 3.566322 CCTCGATGGATTACTTCTCGTCT 59.434 47.826 0.00 0.00 38.35 4.18
6678 14423 4.319911 CCTCGATGGATTACTTCTCGTCTC 60.320 50.000 0.00 0.00 38.35 3.36
6679 14424 3.564644 TCGATGGATTACTTCTCGTCTCC 59.435 47.826 0.00 0.00 0.00 3.71
6680 14425 3.566322 CGATGGATTACTTCTCGTCTCCT 59.434 47.826 0.00 0.00 31.85 3.69
6681 14426 4.319911 CGATGGATTACTTCTCGTCTCCTC 60.320 50.000 0.00 0.00 31.85 3.71
6682 14427 3.288964 TGGATTACTTCTCGTCTCCTCC 58.711 50.000 0.00 0.00 31.85 4.30
6683 14428 3.053544 TGGATTACTTCTCGTCTCCTCCT 60.054 47.826 0.00 0.00 31.85 3.69
6684 14429 3.566742 GGATTACTTCTCGTCTCCTCCTC 59.433 52.174 0.00 0.00 0.00 3.71
6685 14430 4.457466 GATTACTTCTCGTCTCCTCCTCT 58.543 47.826 0.00 0.00 0.00 3.69
6686 14431 2.891191 ACTTCTCGTCTCCTCCTCTT 57.109 50.000 0.00 0.00 0.00 2.85
6687 14432 5.432680 TTACTTCTCGTCTCCTCCTCTTA 57.567 43.478 0.00 0.00 0.00 2.10
6688 14433 3.613030 ACTTCTCGTCTCCTCCTCTTAC 58.387 50.000 0.00 0.00 0.00 2.34
6689 14434 3.264964 ACTTCTCGTCTCCTCCTCTTACT 59.735 47.826 0.00 0.00 0.00 2.24
6690 14435 4.263594 ACTTCTCGTCTCCTCCTCTTACTT 60.264 45.833 0.00 0.00 0.00 2.24
6691 14436 4.304048 TCTCGTCTCCTCCTCTTACTTT 57.696 45.455 0.00 0.00 0.00 2.66
6692 14437 4.011023 TCTCGTCTCCTCCTCTTACTTTG 58.989 47.826 0.00 0.00 0.00 2.77
6693 14438 3.759618 CTCGTCTCCTCCTCTTACTTTGT 59.240 47.826 0.00 0.00 0.00 2.83
6694 14439 4.914983 TCGTCTCCTCCTCTTACTTTGTA 58.085 43.478 0.00 0.00 0.00 2.41
6695 14440 4.942483 TCGTCTCCTCCTCTTACTTTGTAG 59.058 45.833 0.00 0.00 0.00 2.74
6696 14441 4.701171 CGTCTCCTCCTCTTACTTTGTAGT 59.299 45.833 0.00 0.00 38.44 2.73
6697 14442 5.163733 CGTCTCCTCCTCTTACTTTGTAGTC 60.164 48.000 0.00 0.00 35.78 2.59
6698 14443 5.125900 GTCTCCTCCTCTTACTTTGTAGTCC 59.874 48.000 0.00 0.00 35.78 3.85
6699 14444 5.006896 TCCTCCTCTTACTTTGTAGTCCA 57.993 43.478 0.00 0.00 35.78 4.02
6700 14445 5.399991 TCCTCCTCTTACTTTGTAGTCCAA 58.600 41.667 0.00 0.00 35.78 3.53
6701 14446 6.023603 TCCTCCTCTTACTTTGTAGTCCAAT 58.976 40.000 0.00 0.00 35.78 3.16
6702 14447 6.070767 TCCTCCTCTTACTTTGTAGTCCAATG 60.071 42.308 0.00 0.00 35.78 2.82
6703 14448 6.070767 CCTCCTCTTACTTTGTAGTCCAATGA 60.071 42.308 0.00 0.00 35.78 2.57
6704 14449 6.698380 TCCTCTTACTTTGTAGTCCAATGAC 58.302 40.000 0.00 0.00 42.09 3.06
6705 14450 5.577164 CCTCTTACTTTGTAGTCCAATGACG 59.423 44.000 0.00 0.00 46.51 4.35
6706 14451 5.475719 TCTTACTTTGTAGTCCAATGACGG 58.524 41.667 0.00 0.00 46.51 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 0.551396 TATCTCCTCGCTCTCACCCA 59.449 55.000 0.00 0.00 0.00 4.51
34 36 0.589223 CGTATCTCCTCGCTCTCACC 59.411 60.000 0.00 0.00 0.00 4.02
35 37 0.589223 CCGTATCTCCTCGCTCTCAC 59.411 60.000 0.00 0.00 0.00 3.51
36 38 0.535328 CCCGTATCTCCTCGCTCTCA 60.535 60.000 0.00 0.00 0.00 3.27
40 42 2.203509 CCCCCGTATCTCCTCGCT 60.204 66.667 0.00 0.00 0.00 4.93
91 103 0.035820 GTCCGGGGTAATTGCAGACA 60.036 55.000 0.00 0.00 0.00 3.41
132 144 1.477700 CCTCTGTGGCTCTCTCTTCTG 59.522 57.143 0.00 0.00 0.00 3.02
133 145 1.851304 CCTCTGTGGCTCTCTCTTCT 58.149 55.000 0.00 0.00 0.00 2.85
157 169 4.752879 TAACCTGGTCGCAGCCGC 62.753 66.667 0.00 0.00 0.00 6.53
158 170 1.883084 GATAACCTGGTCGCAGCCG 60.883 63.158 0.00 0.00 0.00 5.52
159 171 1.523938 GGATAACCTGGTCGCAGCC 60.524 63.158 0.00 0.00 0.00 4.85
176 188 2.036475 CGGACAGAGATTGGGTAGATGG 59.964 54.545 0.00 0.00 0.00 3.51
181 193 2.225382 TGACGGACAGAGATTGGGTA 57.775 50.000 0.00 0.00 0.00 3.69
217 229 4.534500 TCCATCCATACAACCAGTACAAGT 59.466 41.667 0.00 0.00 35.05 3.16
218 230 5.097742 TCCATCCATACAACCAGTACAAG 57.902 43.478 0.00 0.00 35.05 3.16
219 231 5.708736 ATCCATCCATACAACCAGTACAA 57.291 39.130 0.00 0.00 35.05 2.41
220 232 6.328934 ACATATCCATCCATACAACCAGTACA 59.671 38.462 0.00 0.00 35.05 2.90
221 233 6.769512 ACATATCCATCCATACAACCAGTAC 58.230 40.000 0.00 0.00 35.05 2.73
222 234 7.310423 GCTACATATCCATCCATACAACCAGTA 60.310 40.741 0.00 0.00 37.06 2.74
224 236 5.877012 GCTACATATCCATCCATACAACCAG 59.123 44.000 0.00 0.00 0.00 4.00
227 239 5.352569 GCAGCTACATATCCATCCATACAAC 59.647 44.000 0.00 0.00 0.00 3.32
228 240 5.012975 TGCAGCTACATATCCATCCATACAA 59.987 40.000 0.00 0.00 0.00 2.41
229 241 4.531732 TGCAGCTACATATCCATCCATACA 59.468 41.667 0.00 0.00 0.00 2.29
231 243 5.025453 TCTGCAGCTACATATCCATCCATA 58.975 41.667 9.47 0.00 0.00 2.74
244 256 4.135747 AGAATTTCCTCTCTGCAGCTAC 57.864 45.455 9.47 0.00 0.00 3.58
273 295 7.757097 ACGAGCACAAATTCTGTACTAATAG 57.243 36.000 0.00 0.00 36.10 1.73
284 309 3.746492 AGTACAGGAACGAGCACAAATTC 59.254 43.478 0.00 0.00 0.00 2.17
315 363 3.067180 CACCAATCCATCCATACACAAGC 59.933 47.826 0.00 0.00 0.00 4.01
321 369 4.437682 TTCTCCACCAATCCATCCATAC 57.562 45.455 0.00 0.00 0.00 2.39
325 385 2.880890 CGATTTCTCCACCAATCCATCC 59.119 50.000 0.00 0.00 0.00 3.51
327 387 3.652057 ACGATTTCTCCACCAATCCAT 57.348 42.857 0.00 0.00 0.00 3.41
347 407 1.543871 GCCCTACCCACGAAGAAACAA 60.544 52.381 0.00 0.00 0.00 2.83
349 409 1.017701 CGCCCTACCCACGAAGAAAC 61.018 60.000 0.00 0.00 0.00 2.78
369 429 0.176680 CTGCGCTAATCCTCCACTGT 59.823 55.000 9.73 0.00 0.00 3.55
384 449 0.100325 TGCAAGGTTTGTTGTCTGCG 59.900 50.000 0.00 0.00 0.00 5.18
446 511 1.273606 GTAGTCTCTGAACCTGCAGCA 59.726 52.381 8.66 0.00 35.86 4.41
447 512 1.548269 AGTAGTCTCTGAACCTGCAGC 59.452 52.381 8.66 0.00 35.86 5.25
448 513 3.951775 AAGTAGTCTCTGAACCTGCAG 57.048 47.619 6.78 6.78 37.24 4.41
547 796 4.878397 ACTATCACTTTGCTAATCCACTGC 59.122 41.667 0.00 0.00 0.00 4.40
580 830 0.108945 GCAATTCAGGCACCTTGCTC 60.109 55.000 4.22 0.00 44.28 4.26
633 894 3.252974 ACGCTCACTGAAATTCCCTAG 57.747 47.619 0.00 0.00 0.00 3.02
634 895 3.244422 ACAACGCTCACTGAAATTCCCTA 60.244 43.478 0.00 0.00 0.00 3.53
635 896 2.154462 CAACGCTCACTGAAATTCCCT 58.846 47.619 0.00 0.00 0.00 4.20
650 912 0.322187 ACATAAGGGGTGGACAACGC 60.322 55.000 0.00 0.00 40.94 4.84
652 914 2.871453 ACAACATAAGGGGTGGACAAC 58.129 47.619 0.00 0.00 0.00 3.32
706 969 8.731275 TTTGAACTGAACTAGAATGACTTGAA 57.269 30.769 0.00 0.00 0.00 2.69
707 970 8.777413 CATTTGAACTGAACTAGAATGACTTGA 58.223 33.333 0.00 0.00 0.00 3.02
738 1008 3.181462 TGAGATACAGATGGCATCACACC 60.181 47.826 27.93 13.12 0.00 4.16
778 1049 5.768164 GGAAATGGTTTAGGAAACTCACTCA 59.232 40.000 2.39 0.00 43.67 3.41
779 1050 5.768164 TGGAAATGGTTTAGGAAACTCACTC 59.232 40.000 2.39 1.32 43.67 3.51
780 1051 5.701224 TGGAAATGGTTTAGGAAACTCACT 58.299 37.500 2.39 0.00 43.67 3.41
781 1052 6.590234 ATGGAAATGGTTTAGGAAACTCAC 57.410 37.500 2.39 0.00 43.67 3.51
817 1100 5.104360 TCAGAGGGATTCCAATAAGTCTTGG 60.104 44.000 4.80 0.00 45.91 3.61
855 1138 5.417580 TGGTTACTTGTGAGCTGAAAGTTTT 59.582 36.000 9.77 0.00 35.77 2.43
898 1181 0.622665 CCTGGAGCTTCCTTCCACAT 59.377 55.000 0.00 0.00 39.74 3.21
963 1247 4.412796 TGGCATGAGACAAATAGGAGAG 57.587 45.455 0.00 0.00 0.00 3.20
965 1249 4.970711 AGATGGCATGAGACAAATAGGAG 58.029 43.478 3.81 0.00 35.50 3.69
1091 1375 2.287788 CCTTGTGAACTTGTGGCATCAC 60.288 50.000 10.47 10.47 43.87 3.06
1092 1376 1.955778 CCTTGTGAACTTGTGGCATCA 59.044 47.619 0.00 0.00 0.00 3.07
1209 1495 5.582269 CGGTGATCTATTTGACACACTTGAT 59.418 40.000 0.00 0.00 36.38 2.57
1227 1513 5.556915 TGTGGAAATTAAGAGAACGGTGAT 58.443 37.500 0.00 0.00 0.00 3.06
1276 1563 1.361668 CTGGTGCTGATACACGGTGC 61.362 60.000 8.30 0.00 41.65 5.01
1441 2419 6.092807 GCTACAAGACCAATTTTCTAGGAGTG 59.907 42.308 0.00 0.00 0.00 3.51
1844 2844 5.360714 GCCTCTAATCATGTTCCCAATTTCA 59.639 40.000 0.00 0.00 0.00 2.69
1867 2867 0.179000 CTAGTGTGTCCATCCAGGGC 59.821 60.000 0.00 0.00 44.53 5.19
1942 2942 2.986492 GGTGTCAGCTAGGTACCCA 58.014 57.895 8.74 0.00 0.00 4.51
2020 3025 5.308014 TGATGTTGACTGTCTAATGCAACT 58.692 37.500 9.51 0.00 39.50 3.16
2087 3092 3.690422 TGTCATTCAGTGCAACGTTTTC 58.310 40.909 0.00 0.00 45.86 2.29
2435 3446 8.764287 TCTAAATTCACACATCATACATAAGCG 58.236 33.333 0.00 0.00 0.00 4.68
2616 3652 0.185901 AACTGTCCCAGCAATGGTGT 59.814 50.000 11.69 0.00 34.37 4.16
3601 5512 5.926542 GTCCTTCACGCTGCTATATAATTGA 59.073 40.000 0.00 0.00 0.00 2.57
3607 5518 2.036475 CCTGTCCTTCACGCTGCTATAT 59.964 50.000 0.00 0.00 0.00 0.86
3847 6109 5.163723 TGTCTTTCTTCAGTGACTGCAAAAG 60.164 40.000 19.19 19.19 31.65 2.27
4156 6654 5.300539 TGGTAAATTTGCAGTTCAGTTAGCA 59.699 36.000 8.59 5.71 34.79 3.49
4185 6683 8.651389 ACATTAGCTACATATTGGTGTGTCTAT 58.349 33.333 0.00 0.00 33.62 1.98
4271 6835 5.116882 ACACTCAGTGTAAGAAAGGAACAC 58.883 41.667 9.30 0.00 45.56 3.32
4399 6965 3.433314 CCAGCTCTAGGTGATCAATGCTT 60.433 47.826 10.65 0.00 45.66 3.91
4430 6996 3.686726 CACTCATCTCCAGTTAACTTGCC 59.313 47.826 5.07 0.00 0.00 4.52
4472 7045 4.752146 ACGATTCTACGGAAAGGTTAAGG 58.248 43.478 0.00 0.00 37.61 2.69
4613 8681 3.815401 TGAAAAGCCTTGTTAGAGCAGTC 59.185 43.478 0.00 0.00 0.00 3.51
4771 8841 2.300433 GAGCCATGGCATGTGAATACA 58.700 47.619 37.18 0.00 44.88 2.29
4772 8842 1.610522 GGAGCCATGGCATGTGAATAC 59.389 52.381 37.18 13.09 44.88 1.89
4773 8843 1.214923 TGGAGCCATGGCATGTGAATA 59.785 47.619 37.18 12.26 44.88 1.75
4842 8931 9.513906 TGATTGGTTAAGAACATAAACTCATCA 57.486 29.630 0.00 0.00 0.00 3.07
4855 8944 7.119699 CAGACAGTAAGCATGATTGGTTAAGAA 59.880 37.037 6.43 0.00 44.82 2.52
4993 9082 1.318576 ACCAAGGAACAGAAAAGCCG 58.681 50.000 0.00 0.00 0.00 5.52
5151 9243 4.357918 AAATTGCGCTCTGTCCCTATAT 57.642 40.909 9.73 0.00 0.00 0.86
5154 9246 2.500098 ACTAAATTGCGCTCTGTCCCTA 59.500 45.455 9.73 0.00 0.00 3.53
5156 9248 1.666189 GACTAAATTGCGCTCTGTCCC 59.334 52.381 9.73 0.00 0.00 4.46
5157 9249 2.622436 AGACTAAATTGCGCTCTGTCC 58.378 47.619 9.73 0.00 0.00 4.02
5158 9250 5.520288 TCATAAGACTAAATTGCGCTCTGTC 59.480 40.000 9.73 8.52 0.00 3.51
5159 9251 5.419542 TCATAAGACTAAATTGCGCTCTGT 58.580 37.500 9.73 0.00 0.00 3.41
5162 9254 6.036083 TGACTTCATAAGACTAAATTGCGCTC 59.964 38.462 9.73 0.00 0.00 5.03
5163 9255 5.874810 TGACTTCATAAGACTAAATTGCGCT 59.125 36.000 9.73 0.00 0.00 5.92
5166 9258 9.922305 GTACATGACTTCATAAGACTAAATTGC 57.078 33.333 0.00 0.00 34.26 3.56
5178 9270 9.513906 TCCAATTTTCAAGTACATGACTTCATA 57.486 29.630 0.00 0.00 45.81 2.15
5233 9325 5.435686 ACCACTTCTGTATCTATTTGCCA 57.564 39.130 0.00 0.00 0.00 4.92
5234 9326 6.759497 AAACCACTTCTGTATCTATTTGCC 57.241 37.500 0.00 0.00 0.00 4.52
5243 9335 7.907389 TGTCAGATAGAAAACCACTTCTGTAT 58.093 34.615 0.00 0.00 36.34 2.29
5262 9442 9.631257 AAACATCCATAAATATGTGATGTCAGA 57.369 29.630 23.06 6.28 44.41 3.27
5328 9508 6.183360 CCCAAAGTATGTACATGGATTCAACC 60.183 42.308 18.81 0.00 37.53 3.77
5332 9512 5.531287 GGTCCCAAAGTATGTACATGGATTC 59.469 44.000 18.81 8.02 37.53 2.52
5369 9549 3.118334 ACCTGATGAGCTCATTCCTGAAG 60.118 47.826 29.26 18.09 36.57 3.02
5374 9554 4.070716 CCATAACCTGATGAGCTCATTCC 58.929 47.826 29.26 18.16 36.57 3.01
5380 9560 5.189736 TCAAACTACCATAACCTGATGAGCT 59.810 40.000 0.00 0.00 0.00 4.09
5451 9642 9.575783 AGAGAAATCGAAACTCTAAGTAATCAC 57.424 33.333 14.59 0.00 38.91 3.06
5542 9733 1.447314 CCTTGTACTTCCGACGGCC 60.447 63.158 9.66 0.00 0.00 6.13
5543 9734 0.458025 CTCCTTGTACTTCCGACGGC 60.458 60.000 9.66 0.00 0.00 5.68
5653 9844 2.944349 TGGGTGTTTGAACCGTCTTTAC 59.056 45.455 0.00 0.00 41.52 2.01
5692 9883 5.877012 GGTGTGTCTATCAATCTGTTGACAT 59.123 40.000 0.00 0.00 46.43 3.06
5726 9917 5.186996 TGGAAACTGCTAAGAAAAAGCTG 57.813 39.130 0.00 0.00 42.63 4.24
5746 9937 4.633565 GGTGTTCTTATCTGAAGAAGCTGG 59.366 45.833 0.06 0.00 36.99 4.85
5748 9939 5.489792 TGGTGTTCTTATCTGAAGAAGCT 57.510 39.130 0.06 0.00 36.99 3.74
5778 9969 5.023533 TGACTACTTTTTGCTGACTCAGT 57.976 39.130 7.89 0.00 33.43 3.41
5817 10008 5.630121 TGACCTTAAAGAATGCAGGAAGAA 58.370 37.500 0.00 0.00 0.00 2.52
5818 10009 5.241403 TGACCTTAAAGAATGCAGGAAGA 57.759 39.130 0.00 0.00 0.00 2.87
5819 10010 5.964958 TTGACCTTAAAGAATGCAGGAAG 57.035 39.130 0.00 0.00 0.00 3.46
5877 10068 4.626287 GCTCCCTTTCAAGATCACCATACA 60.626 45.833 0.00 0.00 0.00 2.29
5883 10528 1.066143 TCGGCTCCCTTTCAAGATCAC 60.066 52.381 0.00 0.00 0.00 3.06
5921 10689 6.812160 CAGAGTAACCAACCTTCATGTAGTAC 59.188 42.308 0.00 0.00 0.00 2.73
5979 10848 7.226523 CCGAATGATGTGACCATTAATTCTACA 59.773 37.037 0.00 0.00 34.95 2.74
5980 10849 7.576236 CCGAATGATGTGACCATTAATTCTAC 58.424 38.462 0.00 0.00 34.95 2.59
5982 10851 5.009010 GCCGAATGATGTGACCATTAATTCT 59.991 40.000 0.00 0.00 34.95 2.40
5983 10852 5.009010 AGCCGAATGATGTGACCATTAATTC 59.991 40.000 0.00 0.00 34.67 2.17
5984 10853 4.889409 AGCCGAATGATGTGACCATTAATT 59.111 37.500 0.00 0.00 34.67 1.40
5985 10854 4.464008 AGCCGAATGATGTGACCATTAAT 58.536 39.130 0.00 0.00 34.67 1.40
6058 11053 5.049954 CCGTTCAGAATTACTCGTCCAAAAA 60.050 40.000 0.00 0.00 0.00 1.94
6059 11054 4.449743 CCGTTCAGAATTACTCGTCCAAAA 59.550 41.667 0.00 0.00 0.00 2.44
6060 11055 3.991773 CCGTTCAGAATTACTCGTCCAAA 59.008 43.478 0.00 0.00 0.00 3.28
6061 11056 3.256383 TCCGTTCAGAATTACTCGTCCAA 59.744 43.478 0.00 0.00 0.00 3.53
6062 11057 2.821378 TCCGTTCAGAATTACTCGTCCA 59.179 45.455 0.00 0.00 0.00 4.02
6063 11058 3.436496 CTCCGTTCAGAATTACTCGTCC 58.564 50.000 0.00 0.00 0.00 4.79
6064 11059 3.436496 CCTCCGTTCAGAATTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
6065 11060 2.165845 CCCTCCGTTCAGAATTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
6066 11061 2.426024 TCCCTCCGTTCAGAATTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
6067 11062 3.447944 ACTCCCTCCGTTCAGAATTACTC 59.552 47.826 0.00 0.00 0.00 2.59
6068 11063 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6069 11064 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6070 11065 3.703052 GGTACTCCCTCCGTTCAGAATTA 59.297 47.826 0.00 0.00 0.00 1.40
6071 11066 2.500504 GGTACTCCCTCCGTTCAGAATT 59.499 50.000 0.00 0.00 0.00 2.17
6072 11067 2.108970 GGTACTCCCTCCGTTCAGAAT 58.891 52.381 0.00 0.00 0.00 2.40
6073 11068 1.203087 TGGTACTCCCTCCGTTCAGAA 60.203 52.381 0.00 0.00 0.00 3.02
6074 11069 0.406750 TGGTACTCCCTCCGTTCAGA 59.593 55.000 0.00 0.00 0.00 3.27
6075 11070 1.137086 CATGGTACTCCCTCCGTTCAG 59.863 57.143 0.00 0.00 0.00 3.02
6076 11071 1.191535 CATGGTACTCCCTCCGTTCA 58.808 55.000 0.00 0.00 0.00 3.18
6077 11072 0.179081 GCATGGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
6078 11073 0.617820 AGCATGGTACTCCCTCCGTT 60.618 55.000 0.00 0.00 0.00 4.44
6079 11074 1.001760 AGCATGGTACTCCCTCCGT 59.998 57.895 0.00 0.00 0.00 4.69
6080 11075 1.043116 TGAGCATGGTACTCCCTCCG 61.043 60.000 0.00 0.00 32.98 4.63
6081 11076 0.466124 GTGAGCATGGTACTCCCTCC 59.534 60.000 0.00 0.00 32.98 4.30
6082 11077 1.134670 GTGTGAGCATGGTACTCCCTC 60.135 57.143 0.00 0.00 32.98 4.30
6083 11078 0.905357 GTGTGAGCATGGTACTCCCT 59.095 55.000 0.00 0.00 32.98 4.20
6084 11079 0.613260 TGTGTGAGCATGGTACTCCC 59.387 55.000 0.00 0.00 32.98 4.30
6085 11080 2.472695 TTGTGTGAGCATGGTACTCC 57.527 50.000 0.00 0.00 32.98 3.85
6086 11081 6.683974 ATAATTTGTGTGAGCATGGTACTC 57.316 37.500 0.00 0.00 34.62 2.59
6087 11082 8.752005 ATAATAATTTGTGTGAGCATGGTACT 57.248 30.769 0.00 0.00 0.00 2.73
6088 11083 9.801873 AAATAATAATTTGTGTGAGCATGGTAC 57.198 29.630 0.00 0.00 33.97 3.34
6111 11106 7.945109 ACTAGCTCTTTTTAGGAGGACAAAAAT 59.055 33.333 0.00 0.00 34.20 1.82
6138 11133 5.906113 TCTACTCATCTCTGGTCTTTGTC 57.094 43.478 0.00 0.00 0.00 3.18
6195 11196 2.667318 CCATGTCACACGCACGGAC 61.667 63.158 0.00 0.00 0.00 4.79
6196 11197 2.166130 ATCCATGTCACACGCACGGA 62.166 55.000 0.00 0.00 0.00 4.69
6197 11198 1.298157 AATCCATGTCACACGCACGG 61.298 55.000 0.00 0.00 0.00 4.94
6198 11199 0.095245 GAATCCATGTCACACGCACG 59.905 55.000 0.00 0.00 0.00 5.34
6246 11247 8.305046 TGTTTTCCTCCAATATTTTAGATGGG 57.695 34.615 0.00 0.00 33.66 4.00
6276 11281 1.980765 TCACCTCCTTGACTCTTGCAT 59.019 47.619 0.00 0.00 0.00 3.96
6304 11309 7.119846 AGACATTGCTGGTTACTTTCATCTTAC 59.880 37.037 0.00 0.00 0.00 2.34
6309 11314 6.655078 AAAGACATTGCTGGTTACTTTCAT 57.345 33.333 0.00 0.00 0.00 2.57
6337 13731 1.339438 TGCAAGTGGGCAAAGCAAAAA 60.339 42.857 0.00 0.00 41.65 1.94
6406 13800 5.499935 CAATCTCATCGCAACTCTCAATTC 58.500 41.667 0.00 0.00 0.00 2.17
6407 13801 4.334759 CCAATCTCATCGCAACTCTCAATT 59.665 41.667 0.00 0.00 0.00 2.32
6408 13802 3.875727 CCAATCTCATCGCAACTCTCAAT 59.124 43.478 0.00 0.00 0.00 2.57
6412 13806 3.430929 GGTACCAATCTCATCGCAACTCT 60.431 47.826 7.15 0.00 0.00 3.24
6430 13824 2.100989 CTCCTACACCACTGAGGGTAC 58.899 57.143 0.00 0.00 43.89 3.34
6437 13831 0.670546 CAACCGCTCCTACACCACTG 60.671 60.000 0.00 0.00 0.00 3.66
6439 13833 0.249398 ATCAACCGCTCCTACACCAC 59.751 55.000 0.00 0.00 0.00 4.16
6452 13846 2.270352 TGTCCAACTCACCATCAACC 57.730 50.000 0.00 0.00 0.00 3.77
6484 14229 4.756502 CATCTTCAGATGTTGCTCTCTCA 58.243 43.478 8.45 0.00 45.10 3.27
6496 14241 9.965902 AGGAGTAAAATTAACACATCTTCAGAT 57.034 29.630 0.00 0.00 34.56 2.90
6512 14257 8.331740 TCTTGATGAAATCTGGAGGAGTAAAAT 58.668 33.333 0.00 0.00 45.81 1.82
6546 14291 8.632679 AGGTTGCACAAAATTATATATGTCCAG 58.367 33.333 0.00 0.00 0.00 3.86
6547 14292 8.532186 AGGTTGCACAAAATTATATATGTCCA 57.468 30.769 0.00 0.00 0.00 4.02
6550 14295 8.576442 GCCTAGGTTGCACAAAATTATATATGT 58.424 33.333 11.31 0.00 0.00 2.29
6551 14296 8.796475 AGCCTAGGTTGCACAAAATTATATATG 58.204 33.333 11.31 0.00 0.00 1.78
6552 14297 8.940397 AGCCTAGGTTGCACAAAATTATATAT 57.060 30.769 11.31 0.00 0.00 0.86
6553 14298 7.996066 TGAGCCTAGGTTGCACAAAATTATATA 59.004 33.333 11.31 0.00 0.00 0.86
6555 14300 6.184068 TGAGCCTAGGTTGCACAAAATTATA 58.816 36.000 11.31 0.00 0.00 0.98
6556 14301 5.016173 TGAGCCTAGGTTGCACAAAATTAT 58.984 37.500 11.31 0.00 0.00 1.28
6557 14302 4.402829 TGAGCCTAGGTTGCACAAAATTA 58.597 39.130 11.31 0.00 0.00 1.40
6558 14303 3.230134 TGAGCCTAGGTTGCACAAAATT 58.770 40.909 11.31 0.00 0.00 1.82
6559 14304 2.875296 TGAGCCTAGGTTGCACAAAAT 58.125 42.857 11.31 0.00 0.00 1.82
6560 14305 2.356665 TGAGCCTAGGTTGCACAAAA 57.643 45.000 11.31 0.00 0.00 2.44
6604 14349 8.594550 AGGTGCTCCATTAGTTATACGATTATT 58.405 33.333 7.70 0.00 35.89 1.40
6606 14351 7.014905 ACAGGTGCTCCATTAGTTATACGATTA 59.985 37.037 7.70 0.00 35.89 1.75
6607 14352 6.183360 ACAGGTGCTCCATTAGTTATACGATT 60.183 38.462 7.70 0.00 35.89 3.34
6608 14353 5.304614 ACAGGTGCTCCATTAGTTATACGAT 59.695 40.000 7.70 0.00 35.89 3.73
6609 14354 4.647853 ACAGGTGCTCCATTAGTTATACGA 59.352 41.667 7.70 0.00 35.89 3.43
6610 14355 4.945246 ACAGGTGCTCCATTAGTTATACG 58.055 43.478 7.70 0.00 35.89 3.06
6611 14356 6.163135 AGACAGGTGCTCCATTAGTTATAC 57.837 41.667 7.70 0.00 35.89 1.47
6618 14363 3.445008 AGAGAAGACAGGTGCTCCATTA 58.555 45.455 7.70 0.00 35.89 1.90
6626 14371 2.896685 ACAAGGAGAGAGAAGACAGGTG 59.103 50.000 0.00 0.00 0.00 4.00
6628 14373 4.340617 AGTACAAGGAGAGAGAAGACAGG 58.659 47.826 0.00 0.00 0.00 4.00
6636 14381 4.457466 GAGGTAGGAGTACAAGGAGAGAG 58.543 52.174 0.00 0.00 0.00 3.20
6646 14391 5.625921 GTAATCCATCGAGGTAGGAGTAC 57.374 47.826 15.71 15.71 43.10 2.73
6650 14395 5.063017 AGAAGTAATCCATCGAGGTAGGA 57.937 43.478 0.00 0.00 39.02 2.94
6651 14396 4.083217 CGAGAAGTAATCCATCGAGGTAGG 60.083 50.000 0.00 0.00 39.02 3.18
6652 14397 4.515944 ACGAGAAGTAATCCATCGAGGTAG 59.484 45.833 0.00 0.00 39.02 3.18
6653 14398 4.458397 ACGAGAAGTAATCCATCGAGGTA 58.542 43.478 0.00 0.00 39.02 3.08
6654 14399 3.288964 ACGAGAAGTAATCCATCGAGGT 58.711 45.455 0.00 0.00 39.02 3.85
6655 14400 3.566322 AGACGAGAAGTAATCCATCGAGG 59.434 47.826 0.00 0.00 37.16 4.63
6656 14401 4.319911 GGAGACGAGAAGTAATCCATCGAG 60.320 50.000 0.00 0.00 38.21 4.04
6657 14402 3.564644 GGAGACGAGAAGTAATCCATCGA 59.435 47.826 0.00 0.00 38.21 3.59
6658 14403 3.566322 AGGAGACGAGAAGTAATCCATCG 59.434 47.826 0.00 0.00 39.85 3.84
6659 14404 4.022676 GGAGGAGACGAGAAGTAATCCATC 60.023 50.000 0.00 0.00 39.85 3.51
6660 14405 3.892588 GGAGGAGACGAGAAGTAATCCAT 59.107 47.826 0.00 0.00 39.85 3.41
6661 14406 3.053544 AGGAGGAGACGAGAAGTAATCCA 60.054 47.826 0.00 0.00 39.85 3.41
6662 14407 3.558033 AGGAGGAGACGAGAAGTAATCC 58.442 50.000 0.00 0.00 38.46 3.01
6663 14408 4.457466 AGAGGAGGAGACGAGAAGTAATC 58.543 47.826 0.00 0.00 0.00 1.75
6664 14409 4.513406 AGAGGAGGAGACGAGAAGTAAT 57.487 45.455 0.00 0.00 0.00 1.89
6665 14410 4.304048 AAGAGGAGGAGACGAGAAGTAA 57.696 45.455 0.00 0.00 0.00 2.24
6666 14411 4.470664 AGTAAGAGGAGGAGACGAGAAGTA 59.529 45.833 0.00 0.00 0.00 2.24
6667 14412 2.891191 AAGAGGAGGAGACGAGAAGT 57.109 50.000 0.00 0.00 0.00 3.01
6668 14413 3.881220 AGTAAGAGGAGGAGACGAGAAG 58.119 50.000 0.00 0.00 0.00 2.85
6669 14414 4.304048 AAGTAAGAGGAGGAGACGAGAA 57.696 45.455 0.00 0.00 0.00 2.87
6670 14415 4.011023 CAAAGTAAGAGGAGGAGACGAGA 58.989 47.826 0.00 0.00 0.00 4.04
6671 14416 3.759618 ACAAAGTAAGAGGAGGAGACGAG 59.240 47.826 0.00 0.00 0.00 4.18
6672 14417 3.764218 ACAAAGTAAGAGGAGGAGACGA 58.236 45.455 0.00 0.00 0.00 4.20
6673 14418 4.701171 ACTACAAAGTAAGAGGAGGAGACG 59.299 45.833 0.00 0.00 32.84 4.18
6674 14419 5.125900 GGACTACAAAGTAAGAGGAGGAGAC 59.874 48.000 0.00 0.00 35.56 3.36
6675 14420 5.222275 TGGACTACAAAGTAAGAGGAGGAGA 60.222 44.000 0.00 0.00 35.56 3.71
6676 14421 5.017490 TGGACTACAAAGTAAGAGGAGGAG 58.983 45.833 0.00 0.00 35.56 3.69
6677 14422 5.006896 TGGACTACAAAGTAAGAGGAGGA 57.993 43.478 0.00 0.00 35.56 3.71
6678 14423 5.740290 TTGGACTACAAAGTAAGAGGAGG 57.260 43.478 0.00 0.00 35.56 4.30
6679 14424 6.814146 GTCATTGGACTACAAAGTAAGAGGAG 59.186 42.308 0.00 0.00 43.46 3.69
6680 14425 6.571731 CGTCATTGGACTACAAAGTAAGAGGA 60.572 42.308 0.00 0.00 43.46 3.71
6681 14426 5.577164 CGTCATTGGACTACAAAGTAAGAGG 59.423 44.000 0.00 0.00 43.46 3.69
6682 14427 5.577164 CCGTCATTGGACTACAAAGTAAGAG 59.423 44.000 0.00 0.00 43.46 2.85
6683 14428 5.475719 CCGTCATTGGACTACAAAGTAAGA 58.524 41.667 0.00 0.00 43.46 2.10
6684 14429 5.779806 CCGTCATTGGACTACAAAGTAAG 57.220 43.478 0.00 0.00 43.46 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.