Multiple sequence alignment - TraesCS1B01G037700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G037700 chr1B 100.000 4254 0 0 1 4254 17796176 17791923 0.000000e+00 7856.0
1 TraesCS1B01G037700 chr1B 93.421 76 4 1 1914 1989 476332865 476332791 1.250000e-20 111.0
2 TraesCS1B01G037700 chr1D 88.404 2018 143 40 765 2768 12317640 12315700 0.000000e+00 2346.0
3 TraesCS1B01G037700 chr1D 92.572 727 32 11 3529 4254 12315003 12314298 0.000000e+00 1024.0
4 TraesCS1B01G037700 chr1D 90.930 441 27 7 3123 3563 12315431 12315004 7.930000e-162 580.0
5 TraesCS1B01G037700 chr1D 88.554 332 31 5 1 331 12318853 12318528 3.080000e-106 396.0
6 TraesCS1B01G037700 chr1A 91.731 1173 60 17 3086 4253 14144013 14142873 0.000000e+00 1594.0
7 TraesCS1B01G037700 chr1A 90.931 816 45 19 2119 2927 14144802 14144009 0.000000e+00 1070.0
8 TraesCS1B01G037700 chr1A 82.660 842 72 44 586 1407 14146225 14145438 0.000000e+00 678.0
9 TraesCS1B01G037700 chr1A 86.424 604 65 8 1437 2024 14145441 14144839 0.000000e+00 645.0
10 TraesCS1B01G037700 chr1A 86.131 274 23 8 186 447 14146771 14146501 9.010000e-72 281.0
11 TraesCS1B01G037700 chr1A 90.698 43 2 2 2044 2086 68690109 68690149 5.940000e-04 56.5
12 TraesCS1B01G037700 chr3A 97.041 169 5 0 2925 3093 744921111 744920943 6.960000e-73 285.0
13 TraesCS1B01G037700 chr2D 97.041 169 5 0 2922 3090 161907019 161906851 6.960000e-73 285.0
14 TraesCS1B01G037700 chr2D 93.182 44 1 2 2113 2154 459298792 459298835 3.550000e-06 63.9
15 TraesCS1B01G037700 chr4D 97.024 168 5 0 2925 3092 93338042 93338209 2.500000e-72 283.0
16 TraesCS1B01G037700 chr4D 96.970 165 5 0 2925 3089 75782217 75782053 1.160000e-70 278.0
17 TraesCS1B01G037700 chr4D 94.350 177 10 0 2918 3094 377455499 377455675 5.420000e-69 272.0
18 TraesCS1B01G037700 chr4D 92.683 41 2 1 2036 2076 190221337 190221298 1.650000e-04 58.4
19 TraesCS1B01G037700 chr4D 90.698 43 2 2 2044 2086 253410311 253410271 5.940000e-04 56.5
20 TraesCS1B01G037700 chr5D 96.491 171 5 1 2925 3095 274578176 274578007 9.010000e-72 281.0
21 TraesCS1B01G037700 chr5A 95.930 172 7 0 2923 3094 429513631 429513460 3.240000e-71 279.0
22 TraesCS1B01G037700 chr5A 94.595 37 1 1 2050 2086 382779573 382779608 5.940000e-04 56.5
23 TraesCS1B01G037700 chr7A 94.444 180 8 2 2925 3102 115807523 115807702 4.190000e-70 276.0
24 TraesCS1B01G037700 chr7A 89.655 87 6 1 1922 2008 459178991 459178908 1.620000e-19 108.0
25 TraesCS1B01G037700 chr4A 94.915 177 8 1 2914 3089 582530153 582529977 4.190000e-70 276.0
26 TraesCS1B01G037700 chr4A 100.000 28 0 0 2049 2076 66936953 66936980 8.000000e-03 52.8
27 TraesCS1B01G037700 chr7B 94.521 73 4 0 1918 1990 218537437 218537365 3.480000e-21 113.0
28 TraesCS1B01G037700 chr7B 90.476 84 4 3 1910 1990 677886510 677886592 1.620000e-19 108.0
29 TraesCS1B01G037700 chr5B 93.421 76 5 0 1915 1990 512980708 512980783 3.480000e-21 113.0
30 TraesCS1B01G037700 chr6D 94.444 72 4 0 1921 1992 419274043 419274114 1.250000e-20 111.0
31 TraesCS1B01G037700 chr6D 95.000 40 1 1 2113 2151 249454667 249454706 1.280000e-05 62.1
32 TraesCS1B01G037700 chr4B 91.358 81 5 2 1912 1990 643784566 643784486 4.500000e-20 110.0
33 TraesCS1B01G037700 chr4B 85.714 49 7 0 2049 2097 518381814 518381766 8.000000e-03 52.8
34 TraesCS1B01G037700 chr2B 88.636 88 6 2 1921 2008 115856373 115856456 2.090000e-18 104.0
35 TraesCS1B01G037700 chr6B 93.182 44 1 2 2113 2154 503547002 503546959 3.550000e-06 63.9
36 TraesCS1B01G037700 chrUn 95.000 40 1 1 2113 2151 186910923 186910962 1.280000e-05 62.1
37 TraesCS1B01G037700 chrUn 95.000 40 1 1 2113 2151 267270675 267270714 1.280000e-05 62.1
38 TraesCS1B01G037700 chrUn 95.000 40 1 1 2113 2151 400989468 400989429 1.280000e-05 62.1
39 TraesCS1B01G037700 chrUn 95.000 40 1 1 2113 2151 477203818 477203779 1.280000e-05 62.1
40 TraesCS1B01G037700 chr7D 95.000 40 1 1 2047 2086 80270107 80270069 1.280000e-05 62.1
41 TraesCS1B01G037700 chr7D 92.683 41 2 1 2036 2076 274579811 274579772 1.650000e-04 58.4
42 TraesCS1B01G037700 chr6A 95.000 40 1 1 2047 2086 23356235 23356197 1.280000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G037700 chr1B 17791923 17796176 4253 True 7856.0 7856 100.0000 1 4254 1 chr1B.!!$R1 4253
1 TraesCS1B01G037700 chr1D 12314298 12318853 4555 True 1086.5 2346 90.1150 1 4254 4 chr1D.!!$R1 4253
2 TraesCS1B01G037700 chr1A 14142873 14146771 3898 True 853.6 1594 87.5754 186 4253 5 chr1A.!!$R1 4067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 861 0.107263 TCTGTCTGTGCTGCCAAACA 60.107 50.0 0.00 0.00 0.00 2.83 F
518 865 0.181114 TCTGTGCTGCCAAACACTCT 59.819 50.0 0.00 0.00 37.68 3.24 F
867 1411 0.252742 AAACCCCAACCACCAACCAA 60.253 50.0 0.00 0.00 0.00 3.67 F
1617 2179 0.671163 GGTTGTACCGGATGCGTCAA 60.671 55.0 9.46 5.53 0.00 3.18 F
2463 3080 0.939106 AATGCGTGCAAGGTTTTCGC 60.939 50.0 8.48 8.48 45.70 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 2206 0.170561 CCAGAGCACAGCATTTCTGC 59.829 55.0 0.0 0.0 46.76 4.26 R
2370 2987 0.393808 CAAGAACCATACACCCCGGG 60.394 60.0 15.8 15.8 0.00 5.73 R
2588 3206 0.683973 CCTGTGAGAAGTCAGGCAGT 59.316 55.0 0.0 0.0 43.45 4.40 R
2597 3215 0.951040 GGCCACGAACCTGTGAGAAG 60.951 60.0 0.0 0.0 42.55 2.85 R
4202 5006 0.108992 TCGCATCCGAGGTAACACAC 60.109 55.0 0.0 0.0 38.82 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.369394 CCTGACCTGGCCAAACTAATC 58.631 52.381 7.01 0.00 0.00 1.75
42 43 1.992557 TGACCTGGCCAAACTAATCCT 59.007 47.619 7.01 0.00 0.00 3.24
51 52 4.036380 GGCCAAACTAATCCTTAACCGATG 59.964 45.833 0.00 0.00 0.00 3.84
53 54 5.220796 GCCAAACTAATCCTTAACCGATGAC 60.221 44.000 0.00 0.00 0.00 3.06
59 60 1.065709 TCCTTAACCGATGACTTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
76 77 2.203126 CATCCCGCTCTTCCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
82 83 2.563427 GCTCTTCCCTGCAAACGC 59.437 61.111 0.00 0.00 0.00 4.84
124 125 2.203470 TCGTTCAACCCCCATTAACC 57.797 50.000 0.00 0.00 0.00 2.85
125 126 1.179152 CGTTCAACCCCCATTAACCC 58.821 55.000 0.00 0.00 0.00 4.11
148 149 4.582240 CCCCCAAAGAGAATGCTATTCTTC 59.418 45.833 11.18 6.56 31.16 2.87
151 152 5.221009 CCCAAAGAGAATGCTATTCTTCAGC 60.221 44.000 11.18 0.00 39.56 4.26
162 163 2.597578 TTCTTCAGCCCCCTTTAACC 57.402 50.000 0.00 0.00 0.00 2.85
167 168 0.323451 CAGCCCCCTTTAACCTCCAC 60.323 60.000 0.00 0.00 0.00 4.02
172 173 1.408266 CCCCTTTAACCTCCACGGATG 60.408 57.143 0.00 0.00 36.31 3.51
174 175 1.379527 CTTTAACCTCCACGGATGGC 58.620 55.000 0.00 0.00 46.80 4.40
203 204 2.358737 CGGAAAGCCTGCGGAGTT 60.359 61.111 2.36 0.00 34.79 3.01
206 207 1.578206 GGAAAGCCTGCGGAGTTGTC 61.578 60.000 2.36 0.00 0.00 3.18
213 214 1.004277 CTGCGGAGTTGTCTGTCGAC 61.004 60.000 9.11 9.11 40.64 4.20
252 253 3.621805 TGGCCTCCGAAGCGTTGA 61.622 61.111 3.32 0.00 0.00 3.18
273 274 5.539979 TGATGTGATTTTGGACATGGTTTG 58.460 37.500 0.00 0.00 32.85 2.93
287 288 4.323477 TTTGTGTCGCGGGGAGGG 62.323 66.667 6.13 0.00 0.00 4.30
327 493 2.156098 TGTAATTCTGGGCGTGGTTTC 58.844 47.619 0.00 0.00 0.00 2.78
376 553 0.593128 GAGCCGTGCAATGTTGTTCT 59.407 50.000 0.00 0.00 0.00 3.01
378 555 0.387239 GCCGTGCAATGTTGTTCTCC 60.387 55.000 0.00 0.00 0.00 3.71
380 557 1.541147 CCGTGCAATGTTGTTCTCCAT 59.459 47.619 0.00 0.00 0.00 3.41
404 582 2.460918 CGAGATCTTCGGCGTATGTTT 58.539 47.619 6.85 0.00 45.54 2.83
405 583 2.216488 CGAGATCTTCGGCGTATGTTTG 59.784 50.000 6.85 0.00 45.54 2.93
417 595 3.486875 GCGTATGTTTGGTTCATAGCCAC 60.487 47.826 0.00 0.00 35.46 5.01
447 625 6.256321 CCAATTTGCATCTGTTTATGGCTAAC 59.744 38.462 0.00 0.00 0.00 2.34
448 626 5.973899 TTTGCATCTGTTTATGGCTAACA 57.026 34.783 0.00 0.00 34.55 2.41
450 628 4.588899 TGCATCTGTTTATGGCTAACACT 58.411 39.130 0.00 0.00 32.46 3.55
451 629 4.635765 TGCATCTGTTTATGGCTAACACTC 59.364 41.667 0.00 0.00 32.46 3.51
454 632 6.344500 CATCTGTTTATGGCTAACACTCTCT 58.656 40.000 0.00 0.00 32.46 3.10
455 633 5.967088 TCTGTTTATGGCTAACACTCTCTC 58.033 41.667 0.00 0.00 32.46 3.20
456 634 5.717178 TCTGTTTATGGCTAACACTCTCTCT 59.283 40.000 0.00 0.00 32.46 3.10
457 635 5.724328 TGTTTATGGCTAACACTCTCTCTG 58.276 41.667 0.00 0.00 30.96 3.35
458 636 5.112686 GTTTATGGCTAACACTCTCTCTGG 58.887 45.833 0.00 0.00 0.00 3.86
468 815 0.248825 CTCTCTCTGGTTCATCGGCG 60.249 60.000 0.00 0.00 0.00 6.46
496 843 7.997773 ACCTCTTGGTAAAGATTACCTTTTC 57.002 36.000 17.56 0.00 46.43 2.29
498 845 7.665974 ACCTCTTGGTAAAGATTACCTTTTCTG 59.334 37.037 17.56 7.09 46.43 3.02
500 847 8.617290 TCTTGGTAAAGATTACCTTTTCTGTC 57.383 34.615 17.56 0.00 42.13 3.51
504 851 7.444183 TGGTAAAGATTACCTTTTCTGTCTGTG 59.556 37.037 17.56 0.00 42.13 3.66
507 854 4.999950 AGATTACCTTTTCTGTCTGTGCTG 59.000 41.667 0.00 0.00 0.00 4.41
509 856 0.595095 CCTTTTCTGTCTGTGCTGCC 59.405 55.000 0.00 0.00 0.00 4.85
510 857 1.311859 CTTTTCTGTCTGTGCTGCCA 58.688 50.000 0.00 0.00 0.00 4.92
511 858 1.677576 CTTTTCTGTCTGTGCTGCCAA 59.322 47.619 0.00 0.00 0.00 4.52
512 859 1.761449 TTTCTGTCTGTGCTGCCAAA 58.239 45.000 0.00 0.00 0.00 3.28
513 860 1.024271 TTCTGTCTGTGCTGCCAAAC 58.976 50.000 0.00 0.00 0.00 2.93
514 861 0.107263 TCTGTCTGTGCTGCCAAACA 60.107 50.000 0.00 0.00 0.00 2.83
516 863 0.394216 TGTCTGTGCTGCCAAACACT 60.394 50.000 0.00 0.00 37.68 3.55
517 864 0.308993 GTCTGTGCTGCCAAACACTC 59.691 55.000 0.00 0.00 37.68 3.51
518 865 0.181114 TCTGTGCTGCCAAACACTCT 59.819 50.000 0.00 0.00 37.68 3.24
541 888 6.652481 TCTCACTCTCTGGTTCAAAATTCATC 59.348 38.462 0.00 0.00 0.00 2.92
562 909 8.985315 TCATCTGGTTTTCTAAATCATATGCT 57.015 30.769 0.00 0.00 0.00 3.79
563 910 9.060347 TCATCTGGTTTTCTAAATCATATGCTC 57.940 33.333 0.00 0.00 0.00 4.26
564 911 7.807977 TCTGGTTTTCTAAATCATATGCTCC 57.192 36.000 0.00 0.00 0.00 4.70
579 926 8.670521 TCATATGCTCCTAAGATCCAAGATAA 57.329 34.615 0.00 0.00 0.00 1.75
580 927 8.535335 TCATATGCTCCTAAGATCCAAGATAAC 58.465 37.037 0.00 0.00 0.00 1.89
581 928 6.753913 ATGCTCCTAAGATCCAAGATAACA 57.246 37.500 0.00 0.00 0.00 2.41
583 930 4.985409 GCTCCTAAGATCCAAGATAACACG 59.015 45.833 0.00 0.00 0.00 4.49
591 938 4.594123 TCCAAGATAACACGACACTTCA 57.406 40.909 0.00 0.00 0.00 3.02
595 942 5.444613 CCAAGATAACACGACACTTCAATCG 60.445 44.000 0.00 0.00 43.97 3.34
602 949 3.585748 CGACACTTCAATCGTGTGTTT 57.414 42.857 0.00 0.00 44.95 2.83
604 951 3.718864 CGACACTTCAATCGTGTGTTTTG 59.281 43.478 0.00 0.00 44.95 2.44
617 964 2.096174 TGTGTTTTGTATATTCCCGCGC 59.904 45.455 0.00 0.00 0.00 6.86
625 972 5.159399 TGTATATTCCCGCGCTTTAAAAC 57.841 39.130 5.56 0.00 0.00 2.43
634 986 0.726787 CGCTTTAAAACCCCGCGAAC 60.727 55.000 8.23 0.00 45.99 3.95
643 995 1.376683 CCCCGCGAACTGAAATGGA 60.377 57.895 8.23 0.00 0.00 3.41
666 1018 8.572185 TGGACATTATCGAAAAACAAGATTTCA 58.428 29.630 0.00 0.00 36.75 2.69
719 1261 0.804989 GGCTCTGAACCGAACAATGG 59.195 55.000 0.00 0.00 0.00 3.16
724 1266 2.228582 TCTGAACCGAACAATGGCAATG 59.771 45.455 0.00 0.00 0.00 2.82
727 1269 3.068732 TGAACCGAACAATGGCAATGAAA 59.931 39.130 10.01 0.00 0.00 2.69
728 1270 3.959535 ACCGAACAATGGCAATGAAAT 57.040 38.095 10.01 0.00 0.00 2.17
729 1271 3.587923 ACCGAACAATGGCAATGAAATG 58.412 40.909 10.01 0.00 0.00 2.32
730 1272 3.257873 ACCGAACAATGGCAATGAAATGA 59.742 39.130 10.01 0.00 0.00 2.57
731 1273 4.244066 CCGAACAATGGCAATGAAATGAA 58.756 39.130 10.01 0.00 0.00 2.57
732 1274 4.327898 CCGAACAATGGCAATGAAATGAAG 59.672 41.667 10.01 0.00 0.00 3.02
733 1275 4.201647 CGAACAATGGCAATGAAATGAAGC 60.202 41.667 10.01 0.00 0.00 3.86
734 1276 4.274602 ACAATGGCAATGAAATGAAGCA 57.725 36.364 10.01 0.00 0.00 3.91
789 1331 0.544833 TGGTGGGCCAATGATTTGCT 60.545 50.000 8.40 0.00 42.83 3.91
811 1354 6.013812 TGCTTTTTCACTTTTTAGGGGCATAT 60.014 34.615 0.00 0.00 0.00 1.78
823 1366 8.865420 TTTTAGGGGCATATACGCAATATTTA 57.135 30.769 0.00 0.00 0.00 1.40
867 1411 0.252742 AAACCCCAACCACCAACCAA 60.253 50.000 0.00 0.00 0.00 3.67
874 1418 1.950973 AACCACCAACCAAACACGCC 61.951 55.000 0.00 0.00 0.00 5.68
891 1435 1.407258 CGCCCGAGATCTTCTTCTTCT 59.593 52.381 0.00 0.00 0.00 2.85
892 1436 2.542824 CGCCCGAGATCTTCTTCTTCTC 60.543 54.545 0.00 0.00 33.98 2.87
902 1446 5.630415 TCTTCTTCTTCTCCAGTCCAAAA 57.370 39.130 0.00 0.00 0.00 2.44
928 1472 4.323257 GGGAAAGACGACTATTTTCCTCCA 60.323 45.833 13.86 0.00 45.78 3.86
949 1493 2.417516 CGATCCCATCGCCGTCTT 59.582 61.111 0.00 0.00 46.55 3.01
1252 1806 2.803817 TAAGCGCCCCGAATCTCCC 61.804 63.158 2.29 0.00 0.00 4.30
1281 1843 2.027653 CCCCGCTTCTTCTTCTCTCTTT 60.028 50.000 0.00 0.00 0.00 2.52
1353 1915 1.228184 TATCCGCTCTCCTCGACCC 60.228 63.158 0.00 0.00 0.00 4.46
1577 2139 1.001020 GGTGGATGTGGTGGATGCA 60.001 57.895 0.00 0.00 0.00 3.96
1605 2167 2.125793 GGACGCGGGAGGTTGTAC 60.126 66.667 12.47 0.00 0.00 2.90
1614 2176 1.217244 GAGGTTGTACCGGATGCGT 59.783 57.895 9.46 0.00 44.90 5.24
1616 2178 1.079681 GGTTGTACCGGATGCGTCA 60.080 57.895 9.46 0.00 0.00 4.35
1617 2179 0.671163 GGTTGTACCGGATGCGTCAA 60.671 55.000 9.46 5.53 0.00 3.18
1618 2180 1.149987 GTTGTACCGGATGCGTCAAA 58.850 50.000 9.46 0.00 0.00 2.69
1644 2206 4.749310 AGCAGAGACTTGCCGGCG 62.749 66.667 23.90 11.34 45.18 6.46
1660 2222 4.759564 CGCAGAAATGCTGTGCTC 57.240 55.556 0.00 0.00 46.94 4.26
1664 2226 1.817357 CAGAAATGCTGTGCTCTGGA 58.183 50.000 0.00 0.00 39.85 3.86
1694 2256 0.952984 GCCGCTCTTGCTCTTCTTGT 60.953 55.000 0.00 0.00 36.97 3.16
1812 2384 1.700042 GCGGGAGAGATGGGGAATGT 61.700 60.000 0.00 0.00 0.00 2.71
1834 2406 2.980246 TGTGGAAGAGGAGACAGAGA 57.020 50.000 0.00 0.00 0.00 3.10
1847 2419 1.683917 GACAGAGACAGGAGTGTGTGT 59.316 52.381 0.00 0.00 46.18 3.72
1851 2423 1.409064 GAGACAGGAGTGTGTGTGTGA 59.591 52.381 0.00 0.00 36.88 3.58
1853 2425 1.409064 GACAGGAGTGTGTGTGTGAGA 59.591 52.381 0.00 0.00 36.88 3.27
1859 2435 1.339610 AGTGTGTGTGTGAGAGAGAGC 59.660 52.381 0.00 0.00 0.00 4.09
1918 2494 3.399330 TGAAAACTAGCCGTTGGAGAAG 58.601 45.455 0.00 0.00 35.61 2.85
1990 2580 1.057851 AAGGGTCCGACCACTTTGGA 61.058 55.000 19.43 0.00 40.96 3.53
2065 2655 1.376086 CTGGCCCACATGTCAGTGA 59.624 57.895 0.00 0.00 42.05 3.41
2162 2776 0.951040 CCCGTGACTCCAACAGCTTC 60.951 60.000 0.00 0.00 0.00 3.86
2201 2815 1.210722 CCCTTCCTTGGAGAACTAGCC 59.789 57.143 0.00 0.00 0.00 3.93
2341 2958 7.387673 CACATGTTCTTGTAGTACCTCAATTGA 59.612 37.037 8.12 8.12 0.00 2.57
2384 3001 3.407967 CTGCCCGGGGTGTATGGT 61.408 66.667 25.28 0.00 0.00 3.55
2409 3026 2.817258 TGCCGTTTCAGTTATTTCTGGG 59.183 45.455 0.00 0.00 36.25 4.45
2450 3067 4.024977 GCTGTTTTCAAATTTGGAATGCGT 60.025 37.500 17.90 0.00 0.00 5.24
2463 3080 0.939106 AATGCGTGCAAGGTTTTCGC 60.939 50.000 8.48 8.48 45.70 4.70
2469 3087 2.370281 TGCAAGGTTTTCGCACAAAA 57.630 40.000 0.00 0.00 0.00 2.44
2587 3205 7.966812 TGTATGTGAGCTCTTGATGGTTATAT 58.033 34.615 16.19 0.00 0.00 0.86
2588 3206 9.088987 TGTATGTGAGCTCTTGATGGTTATATA 57.911 33.333 16.19 0.00 0.00 0.86
2589 3207 9.360093 GTATGTGAGCTCTTGATGGTTATATAC 57.640 37.037 16.19 5.78 0.00 1.47
2597 3215 6.759272 TCTTGATGGTTATATACTGCCTGAC 58.241 40.000 0.00 0.00 0.00 3.51
2787 3405 6.998074 TGTTTCATCAGTTCCAATCTAGTTGT 59.002 34.615 0.00 0.00 36.01 3.32
2788 3406 7.041167 TGTTTCATCAGTTCCAATCTAGTTGTG 60.041 37.037 0.00 0.00 36.01 3.33
2807 3425 3.703556 TGTGTCCCAAGCAAATCTGAAAA 59.296 39.130 0.00 0.00 0.00 2.29
2815 3433 6.312918 CCCAAGCAAATCTGAAAATCATTCTG 59.687 38.462 0.00 0.00 0.00 3.02
2833 3451 1.882623 CTGAAACCCAGACTGCCTTTC 59.117 52.381 12.79 12.79 45.78 2.62
2849 3467 3.188667 GCCTTTCTTGGTTCTTTCTACCG 59.811 47.826 0.00 0.00 38.55 4.02
2862 3480 1.921243 TCTACCGTCATGATGTTGCG 58.079 50.000 13.81 5.00 0.00 4.85
2864 3482 3.889227 CCGTCATGATGTTGCGGT 58.111 55.556 13.81 0.00 37.87 5.68
2865 3483 2.170738 CCGTCATGATGTTGCGGTT 58.829 52.632 13.81 0.00 37.87 4.44
2866 3484 0.096976 CCGTCATGATGTTGCGGTTC 59.903 55.000 13.81 0.00 37.87 3.62
2867 3485 1.078709 CGTCATGATGTTGCGGTTCT 58.921 50.000 6.77 0.00 0.00 3.01
2868 3486 1.061131 CGTCATGATGTTGCGGTTCTC 59.939 52.381 6.77 0.00 0.00 2.87
2869 3487 2.076100 GTCATGATGTTGCGGTTCTCA 58.924 47.619 0.00 0.00 0.00 3.27
2870 3488 2.076100 TCATGATGTTGCGGTTCTCAC 58.924 47.619 0.00 0.00 0.00 3.51
2932 3550 2.588027 GCAGTAGCAAGTACTCCCTC 57.412 55.000 0.00 0.00 40.27 4.30
2933 3551 1.137282 GCAGTAGCAAGTACTCCCTCC 59.863 57.143 0.00 0.00 40.27 4.30
2934 3552 1.405821 CAGTAGCAAGTACTCCCTCCG 59.594 57.143 0.00 0.00 40.27 4.63
2935 3553 1.005687 AGTAGCAAGTACTCCCTCCGT 59.994 52.381 0.00 0.00 37.41 4.69
2936 3554 1.823610 GTAGCAAGTACTCCCTCCGTT 59.176 52.381 0.00 0.00 0.00 4.44
2937 3555 0.896226 AGCAAGTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
2938 3556 0.108281 GCAAGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
2939 3557 1.558233 CAAGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
2940 3558 2.731572 CAAGTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
2941 3559 3.094572 CAAGTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
2942 3560 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2943 3561 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2944 3562 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2945 3563 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2946 3564 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2947 3565 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2948 3566 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2949 3567 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2950 3568 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2951 3569 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2952 3570 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2953 3571 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2954 3572 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2955 3573 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2956 3574 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2957 3575 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2958 3576 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2968 3586 6.598753 TTTGTCTTTCTAGAGGTTTCAACG 57.401 37.500 0.00 0.00 0.00 4.10
2969 3587 5.524971 TGTCTTTCTAGAGGTTTCAACGA 57.475 39.130 0.00 0.00 0.00 3.85
2970 3588 5.529791 TGTCTTTCTAGAGGTTTCAACGAG 58.470 41.667 0.00 0.00 0.00 4.18
2971 3589 5.068723 TGTCTTTCTAGAGGTTTCAACGAGT 59.931 40.000 0.00 0.00 0.00 4.18
2972 3590 5.402867 GTCTTTCTAGAGGTTTCAACGAGTG 59.597 44.000 0.00 0.00 0.00 3.51
2973 3591 5.301045 TCTTTCTAGAGGTTTCAACGAGTGA 59.699 40.000 0.00 0.00 0.00 3.41
2974 3592 4.500603 TCTAGAGGTTTCAACGAGTGAC 57.499 45.455 0.00 0.00 35.39 3.67
2975 3593 4.142790 TCTAGAGGTTTCAACGAGTGACT 58.857 43.478 0.00 0.00 35.39 3.41
2976 3594 5.311265 TCTAGAGGTTTCAACGAGTGACTA 58.689 41.667 0.00 0.00 35.39 2.59
2977 3595 4.240175 AGAGGTTTCAACGAGTGACTAC 57.760 45.455 0.00 0.00 35.39 2.73
2978 3596 3.635373 AGAGGTTTCAACGAGTGACTACA 59.365 43.478 0.00 0.00 35.39 2.74
2979 3597 4.281182 AGAGGTTTCAACGAGTGACTACAT 59.719 41.667 0.00 0.00 35.39 2.29
2980 3598 5.475909 AGAGGTTTCAACGAGTGACTACATA 59.524 40.000 0.00 0.00 35.39 2.29
2981 3599 5.467705 AGGTTTCAACGAGTGACTACATAC 58.532 41.667 0.00 0.00 35.39 2.39
2982 3600 4.322804 GGTTTCAACGAGTGACTACATACG 59.677 45.833 0.00 0.00 35.39 3.06
2983 3601 3.752412 TCAACGAGTGACTACATACGG 57.248 47.619 0.00 0.00 34.15 4.02
2984 3602 3.337358 TCAACGAGTGACTACATACGGA 58.663 45.455 0.00 0.00 34.15 4.69
2985 3603 3.373130 TCAACGAGTGACTACATACGGAG 59.627 47.826 0.00 0.00 34.15 4.63
2986 3604 1.669779 ACGAGTGACTACATACGGAGC 59.330 52.381 0.00 0.00 34.15 4.70
2987 3605 1.669265 CGAGTGACTACATACGGAGCA 59.331 52.381 0.00 0.00 0.00 4.26
2988 3606 2.096980 CGAGTGACTACATACGGAGCAA 59.903 50.000 0.00 0.00 0.00 3.91
2989 3607 3.427098 CGAGTGACTACATACGGAGCAAA 60.427 47.826 0.00 0.00 0.00 3.68
2990 3608 4.491676 GAGTGACTACATACGGAGCAAAA 58.508 43.478 0.00 0.00 0.00 2.44
2991 3609 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2992 3610 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2993 3611 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2994 3612 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2995 3613 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2996 3614 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2997 3615 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2998 3616 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2999 3617 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3000 3618 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3001 3619 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3002 3620 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3003 3621 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3004 3622 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3005 3623 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3044 3662 9.788889 CTATATACATCCGTATATGGTAGTCCA 57.211 37.037 10.85 3.57 46.31 4.02
3061 3679 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3065 3683 8.507249 AGTCCATTTGAAATCTCTAAAAAGACG 58.493 33.333 0.00 0.00 0.00 4.18
3066 3684 7.750903 GTCCATTTGAAATCTCTAAAAAGACGG 59.249 37.037 0.00 0.00 0.00 4.79
3067 3685 7.663905 TCCATTTGAAATCTCTAAAAAGACGGA 59.336 33.333 0.00 0.00 0.00 4.69
3068 3686 8.462016 CCATTTGAAATCTCTAAAAAGACGGAT 58.538 33.333 0.00 0.00 0.00 4.18
3078 3696 9.813446 TCTCTAAAAAGACGGATATTTAGGAAC 57.187 33.333 10.89 0.00 36.48 3.62
3079 3697 8.638685 TCTAAAAAGACGGATATTTAGGAACG 57.361 34.615 10.89 0.00 36.48 3.95
3080 3698 6.673154 AAAAAGACGGATATTTAGGAACGG 57.327 37.500 0.00 0.00 0.00 4.44
3081 3699 5.603170 AAAGACGGATATTTAGGAACGGA 57.397 39.130 0.00 0.00 0.00 4.69
3082 3700 4.850347 AGACGGATATTTAGGAACGGAG 57.150 45.455 0.00 0.00 0.00 4.63
3083 3701 3.573110 AGACGGATATTTAGGAACGGAGG 59.427 47.826 0.00 0.00 0.00 4.30
3084 3702 2.631545 ACGGATATTTAGGAACGGAGGG 59.368 50.000 0.00 0.00 0.00 4.30
3096 3714 4.533311 AGGAACGGAGGGAGTACATAAAAA 59.467 41.667 0.00 0.00 0.00 1.94
3115 3733 6.619801 AAAAACTTGAAGTAGTGGTAGCAG 57.380 37.500 0.00 0.00 0.00 4.24
3158 3919 5.855740 TTGGCAATGCATATTCAATCAGA 57.144 34.783 7.79 0.00 0.00 3.27
3200 3961 6.455360 AACTGACAAGATGATTGTTGTTGT 57.545 33.333 10.21 0.00 39.27 3.32
3202 3963 6.267817 ACTGACAAGATGATTGTTGTTGTTG 58.732 36.000 0.00 0.00 39.27 3.33
3203 3964 6.127647 ACTGACAAGATGATTGTTGTTGTTGT 60.128 34.615 0.00 0.00 39.27 3.32
3204 3965 6.035217 TGACAAGATGATTGTTGTTGTTGTG 58.965 36.000 0.00 0.00 39.27 3.33
3205 3966 5.964758 ACAAGATGATTGTTGTTGTTGTGT 58.035 33.333 0.00 0.00 35.98 3.72
3206 3967 6.397272 ACAAGATGATTGTTGTTGTTGTGTT 58.603 32.000 0.00 0.00 35.98 3.32
3207 3968 6.310956 ACAAGATGATTGTTGTTGTTGTGTTG 59.689 34.615 0.00 0.00 35.98 3.33
3208 3969 4.805192 AGATGATTGTTGTTGTTGTGTTGC 59.195 37.500 0.00 0.00 0.00 4.17
3262 4023 2.163211 GGCTCACTTTTGATGAGAAGCC 59.837 50.000 6.19 0.00 45.46 4.35
3301 4062 1.215173 TGATTTGGGATCGGATTGGCT 59.785 47.619 0.00 0.00 0.00 4.75
3303 4064 0.395586 TTTGGGATCGGATTGGCTGG 60.396 55.000 0.00 0.00 0.00 4.85
3304 4065 1.278302 TTGGGATCGGATTGGCTGGA 61.278 55.000 0.00 0.00 0.00 3.86
3305 4066 1.072159 GGGATCGGATTGGCTGGAG 59.928 63.158 0.00 0.00 0.00 3.86
3306 4067 1.410850 GGGATCGGATTGGCTGGAGA 61.411 60.000 0.00 0.00 0.00 3.71
3307 4068 0.034616 GGATCGGATTGGCTGGAGAG 59.965 60.000 0.00 0.00 0.00 3.20
3308 4069 1.043816 GATCGGATTGGCTGGAGAGA 58.956 55.000 0.00 0.00 0.00 3.10
3369 4130 5.125417 GCCCTAGAACAGCATTGTATCAAAA 59.875 40.000 0.00 0.00 36.23 2.44
3383 4144 0.881118 TCAAAATCGGTTCAGGCAGC 59.119 50.000 0.00 0.00 0.00 5.25
3386 4147 0.598065 AAATCGGTTCAGGCAGCAAC 59.402 50.000 0.00 0.00 0.00 4.17
3389 4150 2.946762 GGTTCAGGCAGCAACGTC 59.053 61.111 0.00 0.00 0.00 4.34
3422 4183 7.881775 ATCCCAGTGTAATTTTGATAGAACC 57.118 36.000 0.00 0.00 0.00 3.62
3438 4199 7.326454 TGATAGAACCATCTTAGCATATCAGC 58.674 38.462 0.00 0.00 37.10 4.26
3457 4218 1.664016 GCTGTTGGCAGAACATGTTCG 60.664 52.381 28.18 23.37 45.28 3.95
3501 4262 2.989840 GGATATCATTCTCTTGCGTCGG 59.010 50.000 4.83 0.00 0.00 4.79
3605 4403 2.224281 TGAACAGACGAGCATGAGGTTT 60.224 45.455 0.00 0.00 0.00 3.27
3606 4404 2.550830 ACAGACGAGCATGAGGTTTT 57.449 45.000 0.00 0.00 0.00 2.43
3607 4405 2.146342 ACAGACGAGCATGAGGTTTTG 58.854 47.619 0.00 0.00 0.00 2.44
3609 4407 2.158449 CAGACGAGCATGAGGTTTTGAC 59.842 50.000 0.00 0.00 0.00 3.18
3611 4409 2.548057 GACGAGCATGAGGTTTTGACAA 59.452 45.455 0.00 0.00 0.00 3.18
3613 4411 3.243068 ACGAGCATGAGGTTTTGACAAAC 60.243 43.478 0.00 0.00 41.57 2.93
3614 4412 3.243035 CGAGCATGAGGTTTTGACAAACA 60.243 43.478 0.00 0.00 43.76 2.83
3615 4413 4.681744 GAGCATGAGGTTTTGACAAACAA 58.318 39.130 0.00 0.00 43.76 2.83
3616 4414 4.685924 AGCATGAGGTTTTGACAAACAAG 58.314 39.130 0.00 0.00 43.76 3.16
3617 4415 4.402155 AGCATGAGGTTTTGACAAACAAGA 59.598 37.500 0.00 0.00 43.76 3.02
3618 4416 4.504097 GCATGAGGTTTTGACAAACAAGAC 59.496 41.667 0.00 0.00 43.76 3.01
3619 4417 4.349663 TGAGGTTTTGACAAACAAGACG 57.650 40.909 0.00 0.00 43.76 4.18
3666 4464 8.687242 TCAAACATTTTACATCCAAGTTACACA 58.313 29.630 0.00 0.00 0.00 3.72
3668 4466 9.474920 AAACATTTTACATCCAAGTTACACATG 57.525 29.630 0.00 0.00 0.00 3.21
3712 4510 8.029522 CACAGTAAATTAGTTGTCTAGCTCTCA 58.970 37.037 0.00 0.00 0.00 3.27
3725 4523 3.413846 AGCTCTCATGAGTTTCTTGCA 57.586 42.857 21.92 0.00 42.13 4.08
3788 4587 0.322975 GGTGCTGTCTCCTGTGTGAT 59.677 55.000 0.00 0.00 0.00 3.06
3999 4798 5.182570 CACCATGAAAATCTTCTTCAGCTCA 59.817 40.000 0.00 0.00 36.30 4.26
4002 4801 3.748048 TGAAAATCTTCTTCAGCTCACCG 59.252 43.478 0.00 0.00 32.33 4.94
4044 4843 0.034670 GCCAGGAACAGAAGGCATCT 60.035 55.000 0.00 0.00 46.26 2.90
4070 4869 3.056891 GCAAGCTTATTTGTTGTGGCCTA 60.057 43.478 3.32 0.00 0.00 3.93
4079 4882 5.755409 TTTGTTGTGGCCTAGATAAGAGA 57.245 39.130 3.32 0.00 0.00 3.10
4083 4886 6.817184 TGTTGTGGCCTAGATAAGAGAATAC 58.183 40.000 3.32 0.00 0.00 1.89
4093 4896 8.178964 CCTAGATAAGAGAATACGATAGCACAC 58.821 40.741 0.00 0.00 42.67 3.82
4122 4925 4.252073 AGATCGGCAGAAGCATGATATTC 58.748 43.478 0.00 0.00 44.61 1.75
4132 4936 7.112565 GCAGAAGCATGATATTCACAATAAACG 59.887 37.037 0.00 0.00 41.58 3.60
4133 4937 8.124823 CAGAAGCATGATATTCACAATAAACGT 58.875 33.333 0.00 0.00 0.00 3.99
4153 4957 0.729690 GCAATCGGAGCTGTTCTTCC 59.270 55.000 0.00 0.00 0.00 3.46
4166 4970 3.357203 TGTTCTTCCAGCTACTCGAGAT 58.643 45.455 21.68 6.08 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.226974 CAGGTCAGGGTACGCATCG 60.227 63.158 12.95 0.34 0.00 3.84
40 41 1.339631 TGGCCAAGTCATCGGTTAAGG 60.340 52.381 0.61 0.00 0.00 2.69
42 43 2.639065 GATGGCCAAGTCATCGGTTAA 58.361 47.619 10.96 0.00 34.95 2.01
51 52 2.514824 GAGCGGGATGGCCAAGTC 60.515 66.667 10.96 2.88 35.15 3.01
53 54 1.821332 GAAGAGCGGGATGGCCAAG 60.821 63.158 10.96 2.58 35.15 3.61
59 60 2.203126 GCAGGGAAGAGCGGGATG 60.203 66.667 0.00 0.00 0.00 3.51
88 89 3.214250 GATAGCCGGGTCTCCTGCG 62.214 68.421 10.79 0.00 46.20 5.18
93 94 0.458669 TTGAACGATAGCCGGGTCTC 59.541 55.000 10.79 9.63 43.93 3.36
98 99 1.523032 GGGGTTGAACGATAGCCGG 60.523 63.158 0.00 0.00 43.93 6.13
106 107 1.179152 GGGTTAATGGGGGTTGAACG 58.821 55.000 0.00 0.00 0.00 3.95
125 126 4.176120 AGAATAGCATTCTCTTTGGGGG 57.824 45.455 5.80 0.00 0.00 5.40
142 143 2.654896 AGGTTAAAGGGGGCTGAAGAAT 59.345 45.455 0.00 0.00 0.00 2.40
148 149 0.323451 GTGGAGGTTAAAGGGGGCTG 60.323 60.000 0.00 0.00 0.00 4.85
151 152 1.202769 TCCGTGGAGGTTAAAGGGGG 61.203 60.000 0.00 0.00 41.99 5.40
206 207 3.235195 CTCTGTTCTAAACGGTCGACAG 58.765 50.000 18.91 16.61 38.89 3.51
213 214 3.875134 ACACCAAACTCTGTTCTAAACGG 59.125 43.478 0.00 0.00 39.17 4.44
252 253 5.163322 ACACAAACCATGTCCAAAATCACAT 60.163 36.000 0.00 0.00 41.46 3.21
298 299 2.654863 CCCAGAATTACATCCGCCTTT 58.345 47.619 0.00 0.00 0.00 3.11
303 304 0.937304 CACGCCCAGAATTACATCCG 59.063 55.000 0.00 0.00 0.00 4.18
339 505 3.501445 GGCTCAACAATAGATCCTGCATC 59.499 47.826 0.00 0.00 0.00 3.91
343 509 2.868583 CACGGCTCAACAATAGATCCTG 59.131 50.000 0.00 0.00 0.00 3.86
404 582 0.392461 GGCGAAGTGGCTATGAACCA 60.392 55.000 0.00 0.00 40.72 3.67
405 583 0.392461 TGGCGAAGTGGCTATGAACC 60.392 55.000 0.00 0.00 45.14 3.62
417 595 2.642139 ACAGATGCAAATTGGCGAAG 57.358 45.000 0.00 0.00 36.28 3.79
447 625 1.470632 GCCGATGAACCAGAGAGAGTG 60.471 57.143 0.00 0.00 0.00 3.51
448 626 0.820871 GCCGATGAACCAGAGAGAGT 59.179 55.000 0.00 0.00 0.00 3.24
450 628 1.809869 CGCCGATGAACCAGAGAGA 59.190 57.895 0.00 0.00 0.00 3.10
451 629 1.880340 GCGCCGATGAACCAGAGAG 60.880 63.158 0.00 0.00 0.00 3.20
454 632 4.812476 CCGCGCCGATGAACCAGA 62.812 66.667 0.00 0.00 0.00 3.86
455 633 4.812476 TCCGCGCCGATGAACCAG 62.812 66.667 0.00 0.00 0.00 4.00
458 636 4.814294 AGGTCCGCGCCGATGAAC 62.814 66.667 0.00 0.00 0.00 3.18
485 832 4.378874 GCAGCACAGACAGAAAAGGTAATC 60.379 45.833 0.00 0.00 0.00 1.75
491 838 1.311859 TGGCAGCACAGACAGAAAAG 58.688 50.000 0.00 0.00 0.00 2.27
496 843 0.029834 GTGTTTGGCAGCACAGACAG 59.970 55.000 16.04 0.00 36.33 3.51
498 845 0.308993 GAGTGTTTGGCAGCACAGAC 59.691 55.000 20.79 11.25 38.02 3.51
500 847 0.590195 GAGAGTGTTTGGCAGCACAG 59.410 55.000 20.79 0.00 38.02 3.66
504 851 0.871057 GAGTGAGAGTGTTTGGCAGC 59.129 55.000 0.00 0.00 0.00 5.25
507 854 2.411904 CAGAGAGTGAGAGTGTTTGGC 58.588 52.381 0.00 0.00 0.00 4.52
509 856 3.742433 ACCAGAGAGTGAGAGTGTTTG 57.258 47.619 0.00 0.00 0.00 2.93
510 857 3.706594 TGAACCAGAGAGTGAGAGTGTTT 59.293 43.478 0.00 0.00 0.00 2.83
511 858 3.300388 TGAACCAGAGAGTGAGAGTGTT 58.700 45.455 0.00 0.00 0.00 3.32
512 859 2.950781 TGAACCAGAGAGTGAGAGTGT 58.049 47.619 0.00 0.00 0.00 3.55
513 860 4.327982 TTTGAACCAGAGAGTGAGAGTG 57.672 45.455 0.00 0.00 0.00 3.51
514 861 5.559148 ATTTTGAACCAGAGAGTGAGAGT 57.441 39.130 0.00 0.00 0.00 3.24
516 863 5.928976 TGAATTTTGAACCAGAGAGTGAGA 58.071 37.500 0.00 0.00 0.00 3.27
517 864 6.654161 AGATGAATTTTGAACCAGAGAGTGAG 59.346 38.462 0.00 0.00 0.00 3.51
518 865 6.429078 CAGATGAATTTTGAACCAGAGAGTGA 59.571 38.462 0.00 0.00 0.00 3.41
541 888 7.814264 AGGAGCATATGATTTAGAAAACCAG 57.186 36.000 6.97 0.00 0.00 4.00
560 907 4.985409 CGTGTTATCTTGGATCTTAGGAGC 59.015 45.833 0.00 0.00 0.00 4.70
561 908 6.183360 TGTCGTGTTATCTTGGATCTTAGGAG 60.183 42.308 0.00 0.00 0.00 3.69
562 909 5.655090 TGTCGTGTTATCTTGGATCTTAGGA 59.345 40.000 0.00 0.00 0.00 2.94
563 910 5.749109 GTGTCGTGTTATCTTGGATCTTAGG 59.251 44.000 0.00 0.00 0.00 2.69
564 911 6.565234 AGTGTCGTGTTATCTTGGATCTTAG 58.435 40.000 0.00 0.00 0.00 2.18
591 938 5.448089 GCGGGAATATACAAAACACACGATT 60.448 40.000 0.00 0.00 0.00 3.34
595 942 3.676540 CGCGGGAATATACAAAACACAC 58.323 45.455 0.00 0.00 0.00 3.82
602 949 5.448904 GGTTTTAAAGCGCGGGAATATACAA 60.449 40.000 8.83 0.00 0.00 2.41
604 951 4.530388 GGTTTTAAAGCGCGGGAATATAC 58.470 43.478 8.83 0.00 0.00 1.47
617 964 1.874872 TCAGTTCGCGGGGTTTTAAAG 59.125 47.619 6.13 0.00 0.00 1.85
625 972 1.376683 TCCATTTCAGTTCGCGGGG 60.377 57.895 6.13 0.00 0.00 5.73
634 986 8.741101 TTGTTTTTCGATAATGTCCATTTCAG 57.259 30.769 0.00 0.00 32.50 3.02
719 1261 6.094719 TCATTAGTGTGCTTCATTTCATTGC 58.905 36.000 0.00 0.00 0.00 3.56
724 1266 8.457261 AGAGAAATCATTAGTGTGCTTCATTTC 58.543 33.333 0.00 0.00 0.00 2.17
727 1269 9.453572 TTTAGAGAAATCATTAGTGTGCTTCAT 57.546 29.630 0.00 0.00 0.00 2.57
728 1270 8.846943 TTTAGAGAAATCATTAGTGTGCTTCA 57.153 30.769 0.00 0.00 0.00 3.02
772 1314 2.477845 AAAGCAAATCATTGGCCCAC 57.522 45.000 0.00 0.00 37.02 4.61
789 1331 7.540299 CGTATATGCCCCTAAAAAGTGAAAAA 58.460 34.615 0.00 0.00 0.00 1.94
811 1354 6.367695 CCTCGGATGATGTTAAATATTGCGTA 59.632 38.462 0.00 0.00 0.00 4.42
823 1366 1.528824 CAGGCCCTCGGATGATGTT 59.471 57.895 0.00 0.00 0.00 2.71
867 1411 0.608640 AAGAAGATCTCGGGCGTGTT 59.391 50.000 0.00 0.00 0.00 3.32
874 1418 3.699038 ACTGGAGAAGAAGAAGATCTCGG 59.301 47.826 0.00 0.00 40.37 4.63
891 1435 3.053077 TCTTTCCCTCTTTTGGACTGGA 58.947 45.455 0.00 0.00 0.00 3.86
892 1436 3.149981 GTCTTTCCCTCTTTTGGACTGG 58.850 50.000 0.00 0.00 0.00 4.00
902 1446 4.778427 AGGAAAATAGTCGTCTTTCCCTCT 59.222 41.667 8.77 0.00 46.22 3.69
949 1493 2.365105 GGATCGAGGTGTGGGGGA 60.365 66.667 0.00 0.00 0.00 4.81
985 1530 4.764771 CATGGTGGGTGGGGGCAG 62.765 72.222 0.00 0.00 0.00 4.85
1119 1673 2.610859 AGCCGGTCCTTGTCCCAT 60.611 61.111 1.90 0.00 0.00 4.00
1219 1773 0.530870 GCTTACAGGACGATCCAGGC 60.531 60.000 6.78 0.00 39.61 4.85
1268 1830 3.434984 CGGGCAAGAAAAGAGAGAAGAAG 59.565 47.826 0.00 0.00 0.00 2.85
1274 1836 1.160137 CCACGGGCAAGAAAAGAGAG 58.840 55.000 0.00 0.00 0.00 3.20
1281 1843 2.342279 CGACTCCACGGGCAAGAA 59.658 61.111 0.00 0.00 0.00 2.52
1559 2121 1.001020 TGCATCCACCACATCCACC 60.001 57.895 0.00 0.00 0.00 4.61
1605 2167 0.389817 TCTGTCTTTGACGCATCCGG 60.390 55.000 0.00 0.00 39.22 5.14
1614 2176 2.560542 GTCTCTGCTCCTCTGTCTTTGA 59.439 50.000 0.00 0.00 0.00 2.69
1616 2178 2.888212 AGTCTCTGCTCCTCTGTCTTT 58.112 47.619 0.00 0.00 0.00 2.52
1617 2179 2.562298 CAAGTCTCTGCTCCTCTGTCTT 59.438 50.000 0.00 0.00 0.00 3.01
1618 2180 2.170166 CAAGTCTCTGCTCCTCTGTCT 58.830 52.381 0.00 0.00 0.00 3.41
1644 2206 0.170561 CCAGAGCACAGCATTTCTGC 59.829 55.000 0.00 0.00 46.76 4.26
1650 2212 1.906253 CTCCTCCAGAGCACAGCAT 59.094 57.895 0.00 0.00 35.31 3.79
1694 2256 0.466007 ACATGGCCGCAATCATAGCA 60.466 50.000 0.00 0.00 0.00 3.49
1776 2338 2.976840 GCAACGAAATGAGCCGCCA 61.977 57.895 0.00 0.00 0.00 5.69
1812 2384 3.095332 CTCTGTCTCCTCTTCCACATCA 58.905 50.000 0.00 0.00 0.00 3.07
1834 2406 1.410517 CTCTCACACACACACTCCTGT 59.589 52.381 0.00 0.00 0.00 4.00
1847 2419 1.552792 TCTCTCTCGCTCTCTCTCACA 59.447 52.381 0.00 0.00 0.00 3.58
1851 2423 3.307691 CCCATATCTCTCTCGCTCTCTCT 60.308 52.174 0.00 0.00 0.00 3.10
1853 2425 2.290896 CCCCATATCTCTCTCGCTCTCT 60.291 54.545 0.00 0.00 0.00 3.10
1859 2435 3.093057 TCATCCCCCATATCTCTCTCG 57.907 52.381 0.00 0.00 0.00 4.04
1960 2538 3.725032 GACCCTTCCCCGAACCCC 61.725 72.222 0.00 0.00 0.00 4.95
1961 2539 3.725032 GGACCCTTCCCCGAACCC 61.725 72.222 0.00 0.00 35.57 4.11
1967 2545 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
1968 2546 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1969 2547 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1970 2548 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1971 2549 1.057851 TCCAAAGTGGTCGGACCCTT 61.058 55.000 23.81 21.08 39.03 3.95
1990 2580 1.278127 CACCTCCGTACCAAAGACCAT 59.722 52.381 0.00 0.00 0.00 3.55
2082 2672 1.002011 GAGGCTCCCCTGACAAACC 60.002 63.158 2.15 0.00 43.12 3.27
2085 2675 1.613630 GAGGAGGCTCCCCTGACAA 60.614 63.158 29.62 0.00 43.12 3.18
2086 2676 2.039624 GAGGAGGCTCCCCTGACA 59.960 66.667 29.62 0.00 43.12 3.58
2187 2801 3.587797 TGTAACGGCTAGTTCTCCAAG 57.412 47.619 1.62 0.00 43.06 3.61
2201 2815 6.557110 CACCCCCTAAATAACATTTGTAACG 58.443 40.000 0.00 0.00 0.00 3.18
2370 2987 0.393808 CAAGAACCATACACCCCGGG 60.394 60.000 15.80 15.80 0.00 5.73
2384 3001 5.278266 CCAGAAATAACTGAAACGGCAAGAA 60.278 40.000 0.00 0.00 39.94 2.52
2450 3067 2.370281 TTTTGTGCGAAAACCTTGCA 57.630 40.000 0.00 0.00 36.02 4.08
2463 3080 4.682860 GCAACACTGGATCTCAATTTTGTG 59.317 41.667 0.00 0.00 0.00 3.33
2519 3137 9.573166 CCCTAATGACTGAAAACATATATTCCA 57.427 33.333 0.00 0.00 0.00 3.53
2521 3139 8.515414 GGCCCTAATGACTGAAAACATATATTC 58.485 37.037 0.00 0.00 0.00 1.75
2522 3140 7.451566 GGGCCCTAATGACTGAAAACATATATT 59.548 37.037 17.04 0.00 0.00 1.28
2523 3141 6.948309 GGGCCCTAATGACTGAAAACATATAT 59.052 38.462 17.04 0.00 0.00 0.86
2524 3142 6.102615 AGGGCCCTAATGACTGAAAACATATA 59.897 38.462 27.42 0.00 0.00 0.86
2535 3153 2.557452 CCAAAACAGGGCCCTAATGACT 60.557 50.000 28.13 3.96 0.00 3.41
2538 3156 1.194218 CCCAAAACAGGGCCCTAATG 58.806 55.000 28.13 19.91 43.10 1.90
2557 3175 4.720649 TCAAGAGCTCACATACAGGTAC 57.279 45.455 17.77 0.00 0.00 3.34
2587 3205 1.895798 CCTGTGAGAAGTCAGGCAGTA 59.104 52.381 0.00 0.00 43.45 2.74
2588 3206 0.683973 CCTGTGAGAAGTCAGGCAGT 59.316 55.000 0.00 0.00 43.45 4.40
2589 3207 3.529252 CCTGTGAGAAGTCAGGCAG 57.471 57.895 0.00 0.00 43.45 4.85
2597 3215 0.951040 GGCCACGAACCTGTGAGAAG 60.951 60.000 0.00 0.00 42.55 2.85
2787 3405 4.588106 TGATTTTCAGATTTGCTTGGGACA 59.412 37.500 0.00 0.00 0.00 4.02
2788 3406 5.138125 TGATTTTCAGATTTGCTTGGGAC 57.862 39.130 0.00 0.00 0.00 4.46
2815 3433 2.278332 AGAAAGGCAGTCTGGGTTTC 57.722 50.000 1.14 0.00 0.00 2.78
2829 3447 5.054477 TGACGGTAGAAAGAACCAAGAAAG 58.946 41.667 0.00 0.00 36.78 2.62
2833 3451 4.566004 TCATGACGGTAGAAAGAACCAAG 58.434 43.478 0.00 0.00 36.78 3.61
2849 3467 2.076100 TGAGAACCGCAACATCATGAC 58.924 47.619 0.00 0.00 0.00 3.06
2862 3480 4.602340 TGGTTACAGAGAAGTGAGAACC 57.398 45.455 0.00 0.00 37.42 3.62
2864 3482 6.267699 TCAGAATGGTTACAGAGAAGTGAGAA 59.732 38.462 0.00 0.00 36.16 2.87
2865 3483 5.775195 TCAGAATGGTTACAGAGAAGTGAGA 59.225 40.000 0.00 0.00 36.16 3.27
2866 3484 6.030548 TCAGAATGGTTACAGAGAAGTGAG 57.969 41.667 0.00 0.00 36.16 3.51
2867 3485 6.419484 TTCAGAATGGTTACAGAGAAGTGA 57.581 37.500 0.00 0.00 36.16 3.41
2868 3486 7.148340 GGATTTCAGAATGGTTACAGAGAAGTG 60.148 40.741 0.00 0.00 36.16 3.16
2869 3487 6.881602 GGATTTCAGAATGGTTACAGAGAAGT 59.118 38.462 0.00 0.00 36.16 3.01
2870 3488 6.881065 TGGATTTCAGAATGGTTACAGAGAAG 59.119 38.462 0.00 0.00 36.16 2.85
2922 3540 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
2923 3541 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
2924 3542 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2925 3543 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2926 3544 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2927 3545 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2928 3546 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2929 3547 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2930 3548 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2931 3549 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2932 3550 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2942 3560 8.936864 CGTTGAAACCTCTAGAAAGACAAATAT 58.063 33.333 0.00 0.00 0.00 1.28
2943 3561 8.145767 TCGTTGAAACCTCTAGAAAGACAAATA 58.854 33.333 0.00 0.00 0.00 1.40
2944 3562 6.990349 TCGTTGAAACCTCTAGAAAGACAAAT 59.010 34.615 0.00 0.00 0.00 2.32
2945 3563 6.342906 TCGTTGAAACCTCTAGAAAGACAAA 58.657 36.000 0.00 0.00 0.00 2.83
2946 3564 5.909477 TCGTTGAAACCTCTAGAAAGACAA 58.091 37.500 0.00 0.00 0.00 3.18
2947 3565 5.068723 ACTCGTTGAAACCTCTAGAAAGACA 59.931 40.000 0.00 0.00 0.00 3.41
2948 3566 5.402867 CACTCGTTGAAACCTCTAGAAAGAC 59.597 44.000 0.00 0.00 0.00 3.01
2949 3567 5.301045 TCACTCGTTGAAACCTCTAGAAAGA 59.699 40.000 0.00 0.00 0.00 2.52
2950 3568 5.402867 GTCACTCGTTGAAACCTCTAGAAAG 59.597 44.000 0.00 0.00 35.39 2.62
2951 3569 5.068723 AGTCACTCGTTGAAACCTCTAGAAA 59.931 40.000 0.00 0.00 35.39 2.52
2952 3570 4.583489 AGTCACTCGTTGAAACCTCTAGAA 59.417 41.667 0.00 0.00 35.39 2.10
2953 3571 4.142790 AGTCACTCGTTGAAACCTCTAGA 58.857 43.478 0.00 0.00 35.39 2.43
2954 3572 4.506886 AGTCACTCGTTGAAACCTCTAG 57.493 45.455 0.00 0.00 35.39 2.43
2955 3573 4.823442 TGTAGTCACTCGTTGAAACCTCTA 59.177 41.667 0.00 0.00 35.39 2.43
2956 3574 3.635373 TGTAGTCACTCGTTGAAACCTCT 59.365 43.478 0.00 0.00 35.39 3.69
2957 3575 3.973657 TGTAGTCACTCGTTGAAACCTC 58.026 45.455 0.00 0.00 35.39 3.85
2958 3576 4.602340 ATGTAGTCACTCGTTGAAACCT 57.398 40.909 0.00 0.00 35.39 3.50
2959 3577 4.322804 CGTATGTAGTCACTCGTTGAAACC 59.677 45.833 0.00 0.00 35.39 3.27
2960 3578 4.322804 CCGTATGTAGTCACTCGTTGAAAC 59.677 45.833 0.00 0.00 35.39 2.78
2961 3579 4.216042 TCCGTATGTAGTCACTCGTTGAAA 59.784 41.667 0.00 0.00 35.39 2.69
2962 3580 3.752747 TCCGTATGTAGTCACTCGTTGAA 59.247 43.478 0.00 0.00 35.39 2.69
2963 3581 3.337358 TCCGTATGTAGTCACTCGTTGA 58.663 45.455 0.00 0.00 0.00 3.18
2964 3582 3.681855 CTCCGTATGTAGTCACTCGTTG 58.318 50.000 0.00 0.00 0.00 4.10
2965 3583 2.097142 GCTCCGTATGTAGTCACTCGTT 59.903 50.000 0.00 0.00 0.00 3.85
2966 3584 1.669779 GCTCCGTATGTAGTCACTCGT 59.330 52.381 0.00 0.00 0.00 4.18
2967 3585 1.669265 TGCTCCGTATGTAGTCACTCG 59.331 52.381 0.00 0.00 0.00 4.18
2968 3586 3.777465 TTGCTCCGTATGTAGTCACTC 57.223 47.619 0.00 0.00 0.00 3.51
2969 3587 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2970 3588 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2971 3589 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2972 3590 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2973 3591 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2974 3592 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2975 3593 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2976 3594 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2977 3595 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2978 3596 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2979 3597 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2980 3598 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2981 3599 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2982 3600 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2983 3601 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3039 3657 8.507249 CGTCTTTTTAGAGATTTCAAATGGACT 58.493 33.333 0.00 0.00 0.00 3.85
3040 3658 7.750903 CCGTCTTTTTAGAGATTTCAAATGGAC 59.249 37.037 0.00 0.00 0.00 4.02
3041 3659 7.663905 TCCGTCTTTTTAGAGATTTCAAATGGA 59.336 33.333 0.00 0.00 0.00 3.41
3042 3660 7.816640 TCCGTCTTTTTAGAGATTTCAAATGG 58.183 34.615 0.00 0.00 0.00 3.16
3052 3670 9.813446 GTTCCTAAATATCCGTCTTTTTAGAGA 57.187 33.333 0.00 0.00 34.90 3.10
3053 3671 8.753175 CGTTCCTAAATATCCGTCTTTTTAGAG 58.247 37.037 0.00 0.00 34.90 2.43
3054 3672 7.707893 CCGTTCCTAAATATCCGTCTTTTTAGA 59.292 37.037 0.00 0.00 34.90 2.10
3055 3673 7.707893 TCCGTTCCTAAATATCCGTCTTTTTAG 59.292 37.037 0.00 0.00 33.47 1.85
3056 3674 7.555087 TCCGTTCCTAAATATCCGTCTTTTTA 58.445 34.615 0.00 0.00 0.00 1.52
3057 3675 6.408869 TCCGTTCCTAAATATCCGTCTTTTT 58.591 36.000 0.00 0.00 0.00 1.94
3058 3676 5.981174 TCCGTTCCTAAATATCCGTCTTTT 58.019 37.500 0.00 0.00 0.00 2.27
3059 3677 5.452917 CCTCCGTTCCTAAATATCCGTCTTT 60.453 44.000 0.00 0.00 0.00 2.52
3060 3678 4.038883 CCTCCGTTCCTAAATATCCGTCTT 59.961 45.833 0.00 0.00 0.00 3.01
3061 3679 3.573110 CCTCCGTTCCTAAATATCCGTCT 59.427 47.826 0.00 0.00 0.00 4.18
3062 3680 3.305881 CCCTCCGTTCCTAAATATCCGTC 60.306 52.174 0.00 0.00 0.00 4.79
3063 3681 2.631545 CCCTCCGTTCCTAAATATCCGT 59.368 50.000 0.00 0.00 0.00 4.69
3064 3682 2.895404 TCCCTCCGTTCCTAAATATCCG 59.105 50.000 0.00 0.00 0.00 4.18
3065 3683 3.902467 ACTCCCTCCGTTCCTAAATATCC 59.098 47.826 0.00 0.00 0.00 2.59
3066 3684 5.537674 TGTACTCCCTCCGTTCCTAAATATC 59.462 44.000 0.00 0.00 0.00 1.63
3067 3685 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3068 3686 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3069 3687 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3070 3688 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3071 3689 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3072 3690 4.524802 TTATGTACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
3073 3691 3.393426 TTATGTACTCCCTCCGTTCCT 57.607 47.619 0.00 0.00 0.00 3.36
3074 3692 4.476628 TTTTATGTACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
3075 3693 5.485620 AGTTTTTATGTACTCCCTCCGTTC 58.514 41.667 0.00 0.00 0.00 3.95
3076 3694 5.494390 AGTTTTTATGTACTCCCTCCGTT 57.506 39.130 0.00 0.00 0.00 4.44
3077 3695 5.012354 TCAAGTTTTTATGTACTCCCTCCGT 59.988 40.000 0.00 0.00 0.00 4.69
3078 3696 5.484715 TCAAGTTTTTATGTACTCCCTCCG 58.515 41.667 0.00 0.00 0.00 4.63
3079 3697 6.940867 ACTTCAAGTTTTTATGTACTCCCTCC 59.059 38.462 0.00 0.00 0.00 4.30
3080 3698 7.981102 ACTTCAAGTTTTTATGTACTCCCTC 57.019 36.000 0.00 0.00 0.00 4.30
3081 3699 8.657712 ACTACTTCAAGTTTTTATGTACTCCCT 58.342 33.333 0.00 0.00 0.00 4.20
3082 3700 8.718734 CACTACTTCAAGTTTTTATGTACTCCC 58.281 37.037 0.00 0.00 0.00 4.30
3083 3701 8.718734 CCACTACTTCAAGTTTTTATGTACTCC 58.281 37.037 0.00 0.00 0.00 3.85
3084 3702 9.269453 ACCACTACTTCAAGTTTTTATGTACTC 57.731 33.333 0.00 0.00 0.00 2.59
3096 3714 5.163499 GCTATCTGCTACCACTACTTCAAGT 60.163 44.000 0.00 0.00 38.95 3.16
3115 3733 6.638468 GCCAAATAAGTAATGTGCTTGCTATC 59.362 38.462 0.00 0.00 0.00 2.08
3158 3919 6.428159 GTCAGTTTGTCAGTAACCATCATCTT 59.572 38.462 0.00 0.00 0.00 2.40
3173 3934 6.498304 ACAACAATCATCTTGTCAGTTTGTC 58.502 36.000 0.00 0.00 0.00 3.18
3208 3969 2.376109 AGGATCCATGAAAGCTGCAAG 58.624 47.619 15.82 0.00 0.00 4.01
3262 4023 3.142951 TCACGGTATGTTCAACAAAGGG 58.857 45.455 0.00 0.00 0.00 3.95
3369 4130 2.034879 CGTTGCTGCCTGAACCGAT 61.035 57.895 0.00 0.00 0.00 4.18
3383 4144 2.139917 TGGGATTCAGAAACGACGTTG 58.860 47.619 15.01 2.58 0.00 4.10
3386 4147 1.726791 CACTGGGATTCAGAAACGACG 59.273 52.381 0.00 0.00 46.18 5.12
3389 4150 5.880054 AATTACACTGGGATTCAGAAACG 57.120 39.130 0.00 0.00 46.18 3.60
3422 4183 4.083431 GCCAACAGCTGATATGCTAAGATG 60.083 45.833 23.35 3.24 41.98 2.90
3438 4199 1.069022 CCGAACATGTTCTGCCAACAG 60.069 52.381 30.45 15.53 45.95 3.16
3457 4218 6.765989 TCCAATAGTTACATGTCAAGCATACC 59.234 38.462 0.00 0.00 35.74 2.73
3605 4403 6.277605 TCATAACTCTCGTCTTGTTTGTCAA 58.722 36.000 0.00 0.00 34.61 3.18
3606 4404 5.838529 TCATAACTCTCGTCTTGTTTGTCA 58.161 37.500 0.00 0.00 0.00 3.58
3607 4405 6.586463 TGATCATAACTCTCGTCTTGTTTGTC 59.414 38.462 0.00 0.00 0.00 3.18
3609 4407 6.951256 TGATCATAACTCTCGTCTTGTTTG 57.049 37.500 0.00 0.00 0.00 2.93
3611 4409 7.378966 TCTTTGATCATAACTCTCGTCTTGTT 58.621 34.615 0.00 0.00 0.00 2.83
3613 4411 9.521503 TTATCTTTGATCATAACTCTCGTCTTG 57.478 33.333 0.00 0.00 0.00 3.02
3615 4413 9.906660 GATTATCTTTGATCATAACTCTCGTCT 57.093 33.333 0.00 0.00 0.00 4.18
3616 4414 9.684448 TGATTATCTTTGATCATAACTCTCGTC 57.316 33.333 0.00 0.00 0.00 4.20
3666 4464 2.964464 TGCAACCACAGGATTTTGTCAT 59.036 40.909 0.00 0.00 0.00 3.06
3668 4466 2.100584 TGTGCAACCACAGGATTTTGTC 59.899 45.455 0.00 0.00 46.51 3.18
3788 4587 6.452757 TTCCCATATGGCAATAGAAGATCA 57.547 37.500 16.97 0.00 0.00 2.92
4044 4843 3.005684 CCACAACAAATAAGCTTGCCAGA 59.994 43.478 9.86 0.00 0.00 3.86
4070 4869 7.753309 AGTGTGCTATCGTATTCTCTTATCT 57.247 36.000 0.00 0.00 0.00 1.98
4079 4882 5.720202 TCTCAACAAGTGTGCTATCGTATT 58.280 37.500 0.00 0.00 0.00 1.89
4083 4886 3.241553 CGATCTCAACAAGTGTGCTATCG 59.758 47.826 0.00 0.00 0.00 2.92
4093 4896 1.396301 GCTTCTGCCGATCTCAACAAG 59.604 52.381 0.00 0.00 0.00 3.16
4122 4925 3.416277 CTCCGATTGCACGTTTATTGTG 58.584 45.455 0.00 0.00 40.32 3.33
4132 4936 1.129437 GAAGAACAGCTCCGATTGCAC 59.871 52.381 0.00 0.00 0.00 4.57
4133 4937 1.442769 GAAGAACAGCTCCGATTGCA 58.557 50.000 0.00 0.00 0.00 4.08
4153 4957 1.406898 TCTTGCCATCTCGAGTAGCTG 59.593 52.381 13.13 10.63 0.00 4.24
4162 4966 0.460987 CGGTGGACTCTTGCCATCTC 60.461 60.000 0.00 0.00 37.81 2.75
4166 4970 1.371183 CTTCGGTGGACTCTTGCCA 59.629 57.895 0.00 0.00 0.00 4.92
4193 4997 5.856156 TCCGAGGTAACACACATCTTTTTA 58.144 37.500 0.00 0.00 35.77 1.52
4200 5004 1.739035 CGCATCCGAGGTAACACACAT 60.739 52.381 0.00 0.00 41.41 3.21
4201 5005 0.389296 CGCATCCGAGGTAACACACA 60.389 55.000 0.00 0.00 41.41 3.72
4202 5006 0.108992 TCGCATCCGAGGTAACACAC 60.109 55.000 0.00 0.00 38.82 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.