Multiple sequence alignment - TraesCS1B01G036400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G036400 chr1B 100.000 6817 0 0 1 6817 17358093 17351277 0.000000e+00 12589.0
1 TraesCS1B01G036400 chr1B 95.138 2674 79 23 1634 4266 16922342 16919679 0.000000e+00 4170.0
2 TraesCS1B01G036400 chr1B 96.233 1858 55 7 4965 6817 16851515 16849668 0.000000e+00 3029.0
3 TraesCS1B01G036400 chr1B 90.799 1576 79 28 5292 6808 16914927 16913359 0.000000e+00 2047.0
4 TraesCS1B01G036400 chr1B 93.381 423 17 4 4877 5296 16919487 16919073 3.490000e-172 616.0
5 TraesCS1B01G036400 chr1B 90.705 312 23 5 6161 6467 16742470 16742160 1.770000e-110 411.0
6 TraesCS1B01G036400 chr1B 94.286 210 11 1 4347 4556 16919683 16919475 3.070000e-83 320.0
7 TraesCS1B01G036400 chr1B 97.727 176 3 1 4553 4728 449828212 449828386 1.110000e-77 302.0
8 TraesCS1B01G036400 chr1B 98.630 146 1 1 4735 4880 565662597 565662741 2.440000e-64 257.0
9 TraesCS1B01G036400 chr1A 88.745 2319 152 43 1 2260 13675848 13673580 0.000000e+00 2736.0
10 TraesCS1B01G036400 chr1A 95.159 1570 48 11 4877 6441 13671382 13669836 0.000000e+00 2453.0
11 TraesCS1B01G036400 chr1A 84.412 1251 119 43 3322 4556 13672560 13671370 0.000000e+00 1160.0
12 TraesCS1B01G036400 chr1A 92.371 485 26 7 2598 3071 13673048 13672564 0.000000e+00 680.0
13 TraesCS1B01G036400 chr1A 90.064 312 25 5 6161 6467 13420451 13420141 3.830000e-107 399.0
14 TraesCS1B01G036400 chr1A 86.667 300 22 3 2261 2546 13673338 13673043 3.970000e-82 316.0
15 TraesCS1B01G036400 chr1A 98.830 171 2 0 4550 4720 208903961 208903791 8.590000e-79 305.0
16 TraesCS1B01G036400 chr1A 78.065 155 32 2 4399 4553 490778264 490778112 5.630000e-16 97.1
17 TraesCS1B01G036400 chr1D 88.939 1989 110 40 4877 6815 11545431 11543503 0.000000e+00 2353.0
18 TraesCS1B01G036400 chr1D 91.267 1649 100 24 633 2246 11549594 11547955 0.000000e+00 2207.0
19 TraesCS1B01G036400 chr1D 91.412 850 66 4 3711 4556 11546266 11545420 0.000000e+00 1158.0
20 TraesCS1B01G036400 chr1D 90.270 555 38 12 2531 3071 11547346 11546794 0.000000e+00 712.0
21 TraesCS1B01G036400 chr1D 88.400 500 37 7 1 497 11550152 11549671 3.540000e-162 582.0
22 TraesCS1B01G036400 chr1D 78.710 155 31 2 4399 4553 276797528 276797376 1.210000e-17 102.0
23 TraesCS1B01G036400 chr1D 77.419 155 33 2 4399 4553 225401965 225402117 2.620000e-14 91.6
24 TraesCS1B01G036400 chr1D 80.328 122 20 4 4399 4518 250211940 250212059 9.420000e-14 89.8
25 TraesCS1B01G036400 chr3A 88.912 478 38 12 5881 6351 750729541 750729072 5.930000e-160 575.0
26 TraesCS1B01G036400 chr3A 78.736 348 66 8 2723 3065 740353103 740352759 6.880000e-55 226.0
27 TraesCS1B01G036400 chr3A 90.076 131 10 3 5732 5862 750730107 750729980 4.230000e-37 167.0
28 TraesCS1B01G036400 chr3A 80.255 157 27 4 4399 4553 561333726 561333880 1.550000e-21 115.0
29 TraesCS1B01G036400 chr3A 97.059 34 1 0 4363 4396 497947285 497947252 2.660000e-04 58.4
30 TraesCS1B01G036400 chr3A 92.105 38 3 0 5620 5657 750730244 750730207 3.000000e-03 54.7
31 TraesCS1B01G036400 chr3D 80.294 477 64 24 3730 4201 608068168 608067717 3.940000e-87 333.0
32 TraesCS1B01G036400 chr3D 78.917 351 60 8 2723 3065 608069134 608068790 6.880000e-55 226.0
33 TraesCS1B01G036400 chr3B 80.086 467 63 23 3730 4191 817823902 817823461 3.070000e-83 320.0
34 TraesCS1B01G036400 chr3B 96.703 182 5 1 4553 4734 168268209 168268389 1.110000e-77 302.0
35 TraesCS1B01G036400 chr3B 79.429 350 60 9 2723 3065 817824720 817824376 3.180000e-58 237.0
36 TraesCS1B01G036400 chr3B 86.935 199 24 2 5510 5706 817822329 817822131 8.900000e-54 222.0
37 TraesCS1B01G036400 chr7A 98.830 171 2 0 4553 4723 639786703 639786533 8.590000e-79 305.0
38 TraesCS1B01G036400 chr7A 80.645 155 24 6 4401 4553 665742352 665742502 1.550000e-21 115.0
39 TraesCS1B01G036400 chr5A 98.824 170 2 0 4551 4720 439421078 439420909 3.090000e-78 303.0
40 TraesCS1B01G036400 chr5A 97.740 177 2 2 4545 4720 680850638 680850813 3.090000e-78 303.0
41 TraesCS1B01G036400 chr5A 81.013 158 25 5 4399 4553 493816056 493816211 3.340000e-23 121.0
42 TraesCS1B01G036400 chr5A 80.851 141 25 2 2748 2887 484080636 484080497 7.230000e-20 110.0
43 TraesCS1B01G036400 chr5A 97.059 34 1 0 4363 4396 691814720 691814687 2.660000e-04 58.4
44 TraesCS1B01G036400 chr4B 91.228 228 13 4 3853 4076 406211170 406211394 3.090000e-78 303.0
45 TraesCS1B01G036400 chr4B 84.390 205 18 4 3633 3825 406210971 406211173 9.030000e-44 189.0
46 TraesCS1B01G036400 chr6A 98.266 173 2 1 4554 4726 64065217 64065388 1.110000e-77 302.0
47 TraesCS1B01G036400 chr6A 97.727 176 2 2 4545 4720 582491251 582491078 1.110000e-77 302.0
48 TraesCS1B01G036400 chr6A 97.059 34 1 0 4363 4396 77111291 77111258 2.660000e-04 58.4
49 TraesCS1B01G036400 chr4A 96.648 179 4 2 4552 4730 3725996 3725820 5.170000e-76 296.0
50 TraesCS1B01G036400 chr4A 100.000 137 0 0 4735 4871 229501633 229501769 3.160000e-63 254.0
51 TraesCS1B01G036400 chr4A 84.034 119 18 1 4399 4517 286747778 286747661 5.590000e-21 113.0
52 TraesCS1B01G036400 chr4A 77.576 165 33 4 4399 4563 742356810 742356650 5.630000e-16 97.1
53 TraesCS1B01G036400 chr7B 98.013 151 2 1 4735 4884 183306551 183306701 1.890000e-65 261.0
54 TraesCS1B01G036400 chr7B 96.178 157 3 3 4735 4890 624944871 624944717 3.160000e-63 254.0
55 TraesCS1B01G036400 chr2A 99.306 144 0 1 4735 4878 385446466 385446608 6.780000e-65 259.0
56 TraesCS1B01G036400 chr2A 97.143 35 1 0 4362 4396 25078412 25078378 7.380000e-05 60.2
57 TraesCS1B01G036400 chr5B 100.000 139 0 0 4735 4873 128671441 128671579 2.440000e-64 257.0
58 TraesCS1B01G036400 chr5B 94.479 163 6 3 4735 4894 554754512 554754674 1.470000e-61 248.0
59 TraesCS1B01G036400 chr5B 80.142 141 26 2 2748 2887 460267522 460267383 3.360000e-18 104.0
60 TraesCS1B01G036400 chr5B 97.143 35 1 0 4362 4396 562455992 562456026 7.380000e-05 60.2
61 TraesCS1B01G036400 chr2B 97.351 151 1 3 4735 4885 522079021 522079168 3.160000e-63 254.0
62 TraesCS1B01G036400 chr2B 97.931 145 1 2 4739 4881 316008066 316008210 4.080000e-62 250.0
63 TraesCS1B01G036400 chr2B 84.615 156 17 7 4400 4553 740319119 740319269 1.530000e-31 148.0
64 TraesCS1B01G036400 chr2D 81.132 159 25 4 4399 4556 627516638 627516484 9.280000e-24 122.0
65 TraesCS1B01G036400 chr2D 80.255 157 25 5 4399 4553 393585419 393585571 5.590000e-21 113.0
66 TraesCS1B01G036400 chr2D 81.955 133 23 1 4402 4534 16177849 16177718 2.010000e-20 111.0
67 TraesCS1B01G036400 chr2D 79.618 157 28 4 4399 4554 50400568 50400721 7.230000e-20 110.0
68 TraesCS1B01G036400 chr2D 97.143 35 1 0 4362 4396 637738387 637738353 7.380000e-05 60.2
69 TraesCS1B01G036400 chr6D 80.769 156 26 4 4399 4553 123267960 123268112 1.200000e-22 119.0
70 TraesCS1B01G036400 chr6D 81.618 136 22 2 4399 4534 402325126 402325258 7.230000e-20 110.0
71 TraesCS1B01G036400 chr6D 78.431 153 31 2 4401 4553 117361953 117362103 1.560000e-16 99.0
72 TraesCS1B01G036400 chr6D 80.672 119 19 4 4399 4515 35257889 35257773 9.420000e-14 89.8
73 TraesCS1B01G036400 chr6D 78.295 129 21 7 4399 4523 35294436 35294311 7.330000e-10 76.8
74 TraesCS1B01G036400 chr6D 88.000 50 4 1 4487 4536 109723171 109723124 2.660000e-04 58.4
75 TraesCS1B01G036400 chr4D 80.519 154 27 2 4399 4552 428482010 428481860 1.550000e-21 115.0
76 TraesCS1B01G036400 chr4D 82.727 110 15 3 4402 4509 316913470 316913363 2.020000e-15 95.3
77 TraesCS1B01G036400 chr4D 78.761 113 20 4 4399 4509 19642523 19642633 9.480000e-09 73.1
78 TraesCS1B01G036400 chr5D 80.851 141 25 2 2748 2887 383778004 383777865 7.230000e-20 110.0
79 TraesCS1B01G036400 chr5D 78.710 155 28 4 4399 4553 38729872 38729723 1.560000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G036400 chr1B 17351277 17358093 6816 True 12589.000000 12589 100.000000 1 6817 1 chr1B.!!$R4 6816
1 TraesCS1B01G036400 chr1B 16849668 16851515 1847 True 3029.000000 3029 96.233000 4965 6817 1 chr1B.!!$R2 1852
2 TraesCS1B01G036400 chr1B 16913359 16914927 1568 True 2047.000000 2047 90.799000 5292 6808 1 chr1B.!!$R3 1516
3 TraesCS1B01G036400 chr1B 16919073 16922342 3269 True 1702.000000 4170 94.268333 1634 5296 3 chr1B.!!$R5 3662
4 TraesCS1B01G036400 chr1A 13669836 13675848 6012 True 1469.000000 2736 89.470800 1 6441 5 chr1A.!!$R4 6440
5 TraesCS1B01G036400 chr1D 11543503 11550152 6649 True 1402.400000 2353 90.057600 1 6815 5 chr1D.!!$R2 6814
6 TraesCS1B01G036400 chr3A 750729072 750730244 1172 True 265.566667 575 90.364333 5620 6351 3 chr3A.!!$R3 731
7 TraesCS1B01G036400 chr3D 608067717 608069134 1417 True 279.500000 333 79.605500 2723 4201 2 chr3D.!!$R1 1478
8 TraesCS1B01G036400 chr3B 817822131 817824720 2589 True 259.666667 320 82.150000 2723 5706 3 chr3B.!!$R1 2983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 408 0.036765 TTGCGTCGGAGGCATACTTT 60.037 50.000 24.01 0.0 38.88 2.66 F
739 758 0.042708 GCATCTATGCGTCTGTTGCG 60.043 55.000 0.00 0.0 44.67 4.85 F
1386 1446 0.325577 TGGTGGCTGCTCTATCTGGA 60.326 55.000 0.00 0.0 0.00 3.86 F
2001 2070 0.322008 CAAGTCCTGTTCTGCCCTCC 60.322 60.000 0.00 0.0 0.00 4.30 F
2332 2651 2.293399 GCACACGAATCCTCCTTTGTTT 59.707 45.455 0.00 0.0 0.00 2.83 F
3818 4855 1.537202 GTTGCTGAACTGGATGGACAC 59.463 52.381 0.00 0.0 0.00 3.67 F
4260 5317 0.036952 ATGCTGCTTCACTACTGCGT 60.037 50.000 0.00 0.0 33.87 5.24 F
4839 6306 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1461 0.394565 GCCCATTACCAGCTCTCGAT 59.605 55.000 0.00 0.00 0.00 3.59 R
1983 2052 0.474660 AGGAGGGCAGAACAGGACTT 60.475 55.000 0.00 0.00 0.00 3.01 R
2613 3029 1.235724 GGTCAGTACCCTGTGCAAAC 58.764 55.000 0.00 0.00 40.21 2.93 R
3818 4855 0.025384 CACGTACACAGCGCATGATG 59.975 55.000 17.51 5.75 37.57 3.07 R
4093 5150 0.676466 TTATCTGCTGCGTTGTGGGG 60.676 55.000 0.00 0.00 0.00 4.96 R
4680 6147 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16 R
5356 6844 0.942962 CAATCAAGATCTGCCGCTCC 59.057 55.000 0.00 0.00 0.00 4.70 R
6714 8769 3.691118 CACAAGGGTATGGACAGTTCATG 59.309 47.826 4.35 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 3.910767 CAGCAAGCAAAGATCTCGTTTTC 59.089 43.478 0.00 0.00 0.00 2.29
106 107 3.482786 CAAGCAAAGATCTCGTTTTCCG 58.517 45.455 0.00 0.00 38.13 4.30
111 112 4.666908 GCAAAGATCTCGTTTTCCGTCTTC 60.667 45.833 0.00 0.00 37.94 2.87
144 149 9.224267 CAGCATGCTATTATTAGTATTGGTTCT 57.776 33.333 22.19 0.00 29.35 3.01
155 160 1.242076 ATTGGTTCTGCAGTGCTGTC 58.758 50.000 17.60 12.77 0.00 3.51
234 243 7.278868 GTCAACTGAATAGTCCAAGTTCATAGG 59.721 40.741 0.00 0.00 35.69 2.57
294 306 3.300765 GCAGGTTGCTGCTGGCTT 61.301 61.111 0.00 0.00 46.04 4.35
302 314 2.686915 GTTGCTGCTGGCTTCTTCATAT 59.313 45.455 0.00 0.00 42.39 1.78
340 355 4.701171 TGCAAAGTTCATACATCATGAGCA 59.299 37.500 0.09 0.00 44.85 4.26
371 386 5.166398 GCTCTTGCAGCTGTTTGATTTATT 58.834 37.500 16.64 0.00 45.83 1.40
377 392 5.349270 TGCAGCTGTTTGATTTATTGATTGC 59.651 36.000 16.64 0.00 0.00 3.56
380 395 5.801947 AGCTGTTTGATTTATTGATTGCGTC 59.198 36.000 0.00 0.00 0.00 5.19
389 404 0.176910 TTGATTGCGTCGGAGGCATA 59.823 50.000 24.01 15.58 38.88 3.14
393 408 0.036765 TTGCGTCGGAGGCATACTTT 60.037 50.000 24.01 0.00 38.88 2.66
396 411 1.739371 GCGTCGGAGGCATACTTTTCT 60.739 52.381 17.06 0.00 0.00 2.52
413 428 6.729187 ACTTTTCTGTGTGATTTGAAGTAGC 58.271 36.000 0.00 0.00 0.00 3.58
414 429 6.318648 ACTTTTCTGTGTGATTTGAAGTAGCA 59.681 34.615 0.00 0.00 0.00 3.49
415 430 6.882610 TTTCTGTGTGATTTGAAGTAGCAT 57.117 33.333 0.00 0.00 0.00 3.79
416 431 7.977789 TTTCTGTGTGATTTGAAGTAGCATA 57.022 32.000 0.00 0.00 0.00 3.14
417 432 8.565896 TTTCTGTGTGATTTGAAGTAGCATAT 57.434 30.769 0.00 0.00 0.00 1.78
418 433 9.665719 TTTCTGTGTGATTTGAAGTAGCATATA 57.334 29.630 0.00 0.00 0.00 0.86
419 434 8.877808 TCTGTGTGATTTGAAGTAGCATATAG 57.122 34.615 0.00 0.00 0.00 1.31
420 435 7.439356 TCTGTGTGATTTGAAGTAGCATATAGC 59.561 37.037 0.00 0.00 46.19 2.97
443 458 7.560368 AGCCATATATAGGAATGTTCTGTAGC 58.440 38.462 0.00 0.00 0.00 3.58
500 515 5.738619 TTCAGTTTGAGTGCTGGATAGTA 57.261 39.130 0.00 0.00 33.81 1.82
504 519 5.295292 CAGTTTGAGTGCTGGATAGTATTGG 59.705 44.000 0.00 0.00 0.00 3.16
505 520 3.475566 TGAGTGCTGGATAGTATTGGC 57.524 47.619 0.00 0.00 0.00 4.52
510 525 3.999663 GTGCTGGATAGTATTGGCTGATC 59.000 47.826 0.00 0.00 0.00 2.92
522 537 7.971201 AGTATTGGCTGATCTATGAATTCTCA 58.029 34.615 7.05 0.68 35.56 3.27
523 538 8.095792 AGTATTGGCTGATCTATGAATTCTCAG 58.904 37.037 14.32 14.32 37.10 3.35
539 554 4.156455 TCTCAGAGCCAGTGTTTCTTTT 57.844 40.909 0.00 0.00 0.00 2.27
544 563 4.576463 CAGAGCCAGTGTTTCTTTTGTAGT 59.424 41.667 0.00 0.00 0.00 2.73
548 567 7.502561 AGAGCCAGTGTTTCTTTTGTAGTATTT 59.497 33.333 0.00 0.00 0.00 1.40
553 572 9.944663 CAGTGTTTCTTTTGTAGTATTTGCTTA 57.055 29.630 0.00 0.00 0.00 3.09
559 578 9.733556 TTCTTTTGTAGTATTTGCTTAGATGGA 57.266 29.630 0.00 0.00 0.00 3.41
619 638 8.622948 AATCTTTCCTTATTTACCGGATCATC 57.377 34.615 9.46 0.00 0.00 2.92
626 645 3.904800 TTTACCGGATCATCAGAAGCA 57.095 42.857 9.46 0.00 0.00 3.91
628 647 0.179000 ACCGGATCATCAGAAGCACC 59.821 55.000 9.46 0.00 0.00 5.01
659 678 8.146053 TCCTGAATAACCTCTCTGAATTTACA 57.854 34.615 0.00 0.00 0.00 2.41
661 680 8.260818 CCTGAATAACCTCTCTGAATTTACAGA 58.739 37.037 0.00 0.00 43.39 3.41
718 737 8.397575 TGTTCTGTTTGTATAATGCCTGTTTA 57.602 30.769 0.00 0.00 0.00 2.01
738 757 3.814049 GCATCTATGCGTCTGTTGC 57.186 52.632 0.00 0.00 44.67 4.17
739 758 0.042708 GCATCTATGCGTCTGTTGCG 60.043 55.000 0.00 0.00 44.67 4.85
740 759 1.280982 CATCTATGCGTCTGTTGCGT 58.719 50.000 0.00 0.00 35.38 5.24
741 760 2.459934 CATCTATGCGTCTGTTGCGTA 58.540 47.619 0.00 0.00 32.85 4.42
743 762 1.471287 TCTATGCGTCTGTTGCGTAGT 59.529 47.619 16.65 0.00 46.90 2.73
744 763 2.679336 TCTATGCGTCTGTTGCGTAGTA 59.321 45.455 16.65 6.90 46.90 1.82
745 764 2.579207 ATGCGTCTGTTGCGTAGTAT 57.421 45.000 0.00 0.00 34.24 2.12
746 765 1.904144 TGCGTCTGTTGCGTAGTATC 58.096 50.000 0.00 0.00 34.24 2.24
747 766 1.197910 GCGTCTGTTGCGTAGTATCC 58.802 55.000 0.00 0.00 0.00 2.59
749 768 2.798499 GCGTCTGTTGCGTAGTATCCAT 60.798 50.000 0.00 0.00 0.00 3.41
750 769 3.444916 CGTCTGTTGCGTAGTATCCATT 58.555 45.455 0.00 0.00 0.00 3.16
751 770 3.242944 CGTCTGTTGCGTAGTATCCATTG 59.757 47.826 0.00 0.00 0.00 2.82
753 772 3.449377 TCTGTTGCGTAGTATCCATTGGA 59.551 43.478 8.08 8.08 35.55 3.53
754 773 3.527533 TGTTGCGTAGTATCCATTGGAC 58.472 45.455 7.76 0.00 32.98 4.02
755 774 2.870411 GTTGCGTAGTATCCATTGGACC 59.130 50.000 7.76 1.65 32.98 4.46
756 775 2.112190 TGCGTAGTATCCATTGGACCA 58.888 47.619 7.76 0.00 32.98 4.02
757 776 2.102420 TGCGTAGTATCCATTGGACCAG 59.898 50.000 7.76 0.00 32.98 4.00
758 777 2.755650 CGTAGTATCCATTGGACCAGC 58.244 52.381 7.76 0.00 32.98 4.85
759 778 2.102420 CGTAGTATCCATTGGACCAGCA 59.898 50.000 7.76 0.00 32.98 4.41
760 779 3.431626 CGTAGTATCCATTGGACCAGCAA 60.432 47.826 7.76 0.00 32.98 3.91
761 780 3.004752 AGTATCCATTGGACCAGCAAC 57.995 47.619 7.76 0.37 32.98 4.17
785 804 7.491682 ACTTTGTTCTAGCATGTTTGTTTCAT 58.508 30.769 0.00 0.00 0.00 2.57
791 810 6.514947 TCTAGCATGTTTGTTTCATTTTGCT 58.485 32.000 0.00 0.00 0.00 3.91
796 815 7.441760 AGCATGTTTGTTTCATTTTGCTATTCA 59.558 29.630 0.00 0.00 0.00 2.57
819 838 2.036958 TGGATGAACCAATACCTGCG 57.963 50.000 0.00 0.00 46.75 5.18
842 861 5.006746 CGTTAGGCAGGTAGAAATTAGCTTG 59.993 44.000 0.00 0.00 0.00 4.01
843 862 4.576330 AGGCAGGTAGAAATTAGCTTGT 57.424 40.909 0.00 0.00 0.00 3.16
844 863 4.923415 AGGCAGGTAGAAATTAGCTTGTT 58.077 39.130 0.00 0.00 0.00 2.83
845 864 5.325239 AGGCAGGTAGAAATTAGCTTGTTT 58.675 37.500 0.00 0.00 0.00 2.83
847 866 7.119387 AGGCAGGTAGAAATTAGCTTGTTTAT 58.881 34.615 0.00 0.00 0.00 1.40
850 869 9.290483 GCAGGTAGAAATTAGCTTGTTTATTTC 57.710 33.333 0.00 1.00 37.30 2.17
873 917 7.974243 TCATTTTGCTATTTGATCATGTTCG 57.026 32.000 0.00 0.00 0.00 3.95
877 921 6.603237 TTGCTATTTGATCATGTTCGTAGG 57.397 37.500 0.00 0.00 0.00 3.18
882 926 2.837498 TGATCATGTTCGTAGGCCATG 58.163 47.619 5.01 0.00 37.36 3.66
884 928 2.309528 TCATGTTCGTAGGCCATGTC 57.690 50.000 5.01 0.00 37.33 3.06
915 959 5.911752 TCCATGTTACAACTGCAAACAATT 58.088 33.333 5.09 0.00 36.75 2.32
925 969 4.959723 ACTGCAAACAATTTAATGTGGCT 58.040 34.783 0.00 0.00 36.17 4.75
929 973 6.723282 TGCAAACAATTTAATGTGGCTTTTC 58.277 32.000 0.00 0.00 36.17 2.29
933 977 4.244862 CAATTTAATGTGGCTTTTCGGCT 58.755 39.130 0.00 0.00 39.32 5.52
938 982 1.975660 TGTGGCTTTTCGGCTAGTTT 58.024 45.000 0.00 0.00 39.32 2.66
982 1032 9.696572 ATATTATGCAAGATGGCTTATCAGATT 57.303 29.630 0.00 0.00 38.31 2.40
985 1035 4.202080 TGCAAGATGGCTTATCAGATTTGC 60.202 41.667 13.79 13.79 40.70 3.68
1026 1080 1.821753 CAGGAGGACTCTCAACGTGAT 59.178 52.381 0.00 0.00 41.69 3.06
1042 1096 5.950758 ACGTGATATGGATAGACAGAGTC 57.049 43.478 0.00 0.00 0.00 3.36
1043 1097 5.626142 ACGTGATATGGATAGACAGAGTCT 58.374 41.667 4.93 4.93 45.54 3.24
1047 1101 7.094420 CGTGATATGGATAGACAGAGTCTCAAT 60.094 40.741 2.48 0.00 42.40 2.57
1119 1173 1.028905 GCGAGACTGGAGCTATGAGT 58.971 55.000 0.00 0.00 0.00 3.41
1134 1188 4.996434 AGTGGCCTGCAGCGTGAC 62.996 66.667 8.66 0.00 45.17 3.67
1140 1194 2.250485 CTGCAGCGTGACAGCAAC 59.750 61.111 0.00 0.00 40.66 4.17
1239 1293 0.533755 GAAGTGCATCCCCAGATCCG 60.534 60.000 0.00 0.00 0.00 4.18
1386 1446 0.325577 TGGTGGCTGCTCTATCTGGA 60.326 55.000 0.00 0.00 0.00 3.86
1401 1461 4.849813 ATCTGGAATGAACCTGTCATCA 57.150 40.909 0.00 0.00 46.80 3.07
1527 1587 1.553248 TCCTTCATGAAACGTCCCGAT 59.447 47.619 9.88 0.00 0.00 4.18
1776 1845 4.706035 CAGCTTCTCTTCAGATGCCTATT 58.294 43.478 6.32 0.00 46.49 1.73
1782 1851 4.903649 TCTCTTCAGATGCCTATTGATCCA 59.096 41.667 0.00 0.00 0.00 3.41
1953 2022 4.022503 GGCTGCTATGGAAATCTTGGATTC 60.023 45.833 0.00 0.00 0.00 2.52
2001 2070 0.322008 CAAGTCCTGTTCTGCCCTCC 60.322 60.000 0.00 0.00 0.00 4.30
2208 2277 3.054139 TCTCTGAAATAGCTGGGCATGTT 60.054 43.478 0.00 0.00 0.00 2.71
2290 2604 5.753713 GCATATGCATCGTACAGTCTTAG 57.246 43.478 22.84 0.00 41.59 2.18
2332 2651 2.293399 GCACACGAATCCTCCTTTGTTT 59.707 45.455 0.00 0.00 0.00 2.83
2333 2652 3.500680 GCACACGAATCCTCCTTTGTTTA 59.499 43.478 0.00 0.00 0.00 2.01
2334 2653 4.156008 GCACACGAATCCTCCTTTGTTTAT 59.844 41.667 0.00 0.00 0.00 1.40
2335 2654 5.335661 GCACACGAATCCTCCTTTGTTTATT 60.336 40.000 0.00 0.00 0.00 1.40
2613 3029 3.118542 GTCTTTTCTGCAGTTTGCCAAG 58.881 45.455 14.67 8.03 44.23 3.61
3113 3540 4.530875 AGGAAAGCATTAGGACATCCTTG 58.469 43.478 5.58 0.29 46.09 3.61
3407 4242 6.967199 GGCAAAGTAGCATTTACAATCACTAC 59.033 38.462 0.00 0.00 35.83 2.73
3464 4300 8.100164 TCATGTCTTGTTGAGATTGGTATACAA 58.900 33.333 5.01 0.00 44.54 2.41
3530 4372 3.914435 ACCCCTTTCCACTAACATGTACT 59.086 43.478 0.00 0.00 0.00 2.73
3728 4765 3.370840 TTGCTGGAAGAGTAATGGCAT 57.629 42.857 0.00 0.00 34.07 4.40
3785 4822 4.640771 AGAGGTTGTGGATTTAGCTCAA 57.359 40.909 0.00 0.00 38.52 3.02
3806 4843 5.592282 TCAACAGACTAAAATGGTTGCTGAA 59.408 36.000 0.00 0.00 38.87 3.02
3818 4855 1.537202 GTTGCTGAACTGGATGGACAC 59.463 52.381 0.00 0.00 0.00 3.67
3914 4951 5.408299 CGTTATCCAGTTCATTGTCTCAACA 59.592 40.000 0.00 0.00 0.00 3.33
4093 5150 2.464682 GCTGGAGCACTGTGATGAC 58.535 57.895 12.86 1.01 41.59 3.06
4102 5159 0.250295 ACTGTGATGACCCCACAACG 60.250 55.000 0.00 0.00 43.07 4.10
4129 5186 7.608376 CAGCAGATAATGATGGATGAGATTCTT 59.392 37.037 0.00 0.00 41.75 2.52
4132 5189 9.503399 CAGATAATGATGGATGAGATTCTTCAA 57.497 33.333 0.00 0.00 0.00 2.69
4153 5210 1.677576 TCTGTTTGTTTGCTGGCTCAG 59.322 47.619 0.00 0.00 34.12 3.35
4183 5240 8.612619 CAATATGGTAACTATGTTGTTCAGGTC 58.387 37.037 0.00 0.00 37.61 3.85
4242 5299 5.006386 CCTTGAACTTGTCCAAGCTTCTAT 58.994 41.667 6.94 0.00 41.99 1.98
4250 5307 2.354199 GTCCAAGCTTCTATGCTGCTTC 59.646 50.000 0.00 0.00 44.04 3.86
4258 5315 3.170791 TCTATGCTGCTTCACTACTGC 57.829 47.619 0.00 0.00 0.00 4.40
4260 5317 0.036952 ATGCTGCTTCACTACTGCGT 60.037 50.000 0.00 0.00 33.87 5.24
4283 5749 6.551736 GTGGTGTAATGTAGTTGGCTATTTG 58.448 40.000 0.00 0.00 0.00 2.32
4347 5813 7.698130 GCTTGAAAATTACTAGTAACTGCATGG 59.302 37.037 17.45 9.46 0.00 3.66
4510 5977 8.693625 TGATTTGGCATTGTGAATGTTGATATA 58.306 29.630 0.00 0.00 41.01 0.86
4542 6009 7.556275 TCTGTAAACTTGGTCAAACTTCAGAAT 59.444 33.333 0.00 0.00 0.00 2.40
4543 6010 7.479980 TGTAAACTTGGTCAAACTTCAGAATG 58.520 34.615 0.00 0.00 37.54 2.67
4545 6012 6.530019 AACTTGGTCAAACTTCAGAATGTT 57.470 33.333 0.00 0.00 37.40 2.71
4548 6015 6.813152 ACTTGGTCAAACTTCAGAATGTTTTG 59.187 34.615 7.58 6.77 37.40 2.44
4549 6016 6.522625 TGGTCAAACTTCAGAATGTTTTGA 57.477 33.333 9.27 9.27 37.75 2.69
4554 6021 9.567848 GTCAAACTTCAGAATGTTTTGACTTAA 57.432 29.630 23.15 3.83 46.03 1.85
4555 6022 9.787532 TCAAACTTCAGAATGTTTTGACTTAAG 57.212 29.630 0.00 0.00 36.37 1.85
4556 6023 9.023967 CAAACTTCAGAATGTTTTGACTTAAGG 57.976 33.333 7.53 0.00 35.17 2.69
4557 6024 7.277174 ACTTCAGAATGTTTTGACTTAAGGG 57.723 36.000 7.53 0.00 37.40 3.95
4558 6025 7.060421 ACTTCAGAATGTTTTGACTTAAGGGA 58.940 34.615 7.53 0.00 37.40 4.20
4559 6026 6.877611 TCAGAATGTTTTGACTTAAGGGAC 57.122 37.500 7.53 0.00 37.40 4.46
4560 6027 6.361433 TCAGAATGTTTTGACTTAAGGGACA 58.639 36.000 7.53 4.55 37.40 4.02
4561 6028 6.486657 TCAGAATGTTTTGACTTAAGGGACAG 59.513 38.462 7.53 0.00 37.40 3.51
4562 6029 6.486657 CAGAATGTTTTGACTTAAGGGACAGA 59.513 38.462 7.53 0.00 0.00 3.41
4563 6030 6.486993 AGAATGTTTTGACTTAAGGGACAGAC 59.513 38.462 7.53 7.51 0.00 3.51
4564 6031 4.457466 TGTTTTGACTTAAGGGACAGACC 58.543 43.478 7.53 0.00 38.08 3.85
4574 6041 3.768633 GGACAGACCCAGTGCATAG 57.231 57.895 0.00 0.00 0.00 2.23
4575 6042 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
4576 6043 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
4577 6044 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
4578 6045 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
4579 6046 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
4580 6047 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
4581 6048 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
4582 6049 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
4583 6050 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
4584 6051 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
4585 6052 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
4586 6053 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
4587 6054 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
4588 6055 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
4589 6056 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
4590 6057 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
4591 6058 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
4599 6066 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
4600 6067 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
4601 6068 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
4602 6069 2.153401 CACAAGGTGGGGTCTGGGA 61.153 63.158 0.00 0.00 0.00 4.37
4603 6070 1.386772 ACAAGGTGGGGTCTGGGAA 60.387 57.895 0.00 0.00 0.00 3.97
4604 6071 1.380302 CAAGGTGGGGTCTGGGAAG 59.620 63.158 0.00 0.00 0.00 3.46
4605 6072 1.852626 AAGGTGGGGTCTGGGAAGG 60.853 63.158 0.00 0.00 0.00 3.46
4606 6073 3.339093 GGTGGGGTCTGGGAAGGG 61.339 72.222 0.00 0.00 0.00 3.95
4607 6074 2.204090 GTGGGGTCTGGGAAGGGA 60.204 66.667 0.00 0.00 0.00 4.20
4608 6075 1.619669 GTGGGGTCTGGGAAGGGAT 60.620 63.158 0.00 0.00 0.00 3.85
4609 6076 1.165782 TGGGGTCTGGGAAGGGATT 59.834 57.895 0.00 0.00 0.00 3.01
4610 6077 0.423956 TGGGGTCTGGGAAGGGATTA 59.576 55.000 0.00 0.00 0.00 1.75
4611 6078 1.012049 TGGGGTCTGGGAAGGGATTAT 59.988 52.381 0.00 0.00 0.00 1.28
4612 6079 2.254293 TGGGGTCTGGGAAGGGATTATA 59.746 50.000 0.00 0.00 0.00 0.98
4613 6080 2.913617 GGGGTCTGGGAAGGGATTATAG 59.086 54.545 0.00 0.00 0.00 1.31
4614 6081 2.913617 GGGTCTGGGAAGGGATTATAGG 59.086 54.545 0.00 0.00 0.00 2.57
4615 6082 3.441054 GGGTCTGGGAAGGGATTATAGGA 60.441 52.174 0.00 0.00 0.00 2.94
4616 6083 4.240323 GGTCTGGGAAGGGATTATAGGAA 58.760 47.826 0.00 0.00 0.00 3.36
4617 6084 4.041815 GGTCTGGGAAGGGATTATAGGAAC 59.958 50.000 0.00 0.00 0.00 3.62
4618 6085 4.041815 GTCTGGGAAGGGATTATAGGAACC 59.958 50.000 0.00 0.00 0.00 3.62
4619 6086 4.077387 TCTGGGAAGGGATTATAGGAACCT 60.077 45.833 0.00 0.00 0.00 3.50
4620 6087 5.138996 TCTGGGAAGGGATTATAGGAACCTA 59.861 44.000 2.93 2.93 0.00 3.08
4621 6088 5.412384 TGGGAAGGGATTATAGGAACCTAG 58.588 45.833 6.72 0.00 31.45 3.02
4622 6089 5.102346 TGGGAAGGGATTATAGGAACCTAGT 60.102 44.000 6.72 0.00 31.45 2.57
4623 6090 5.484644 GGGAAGGGATTATAGGAACCTAGTC 59.515 48.000 6.72 4.93 31.45 2.59
4624 6091 6.324544 GGAAGGGATTATAGGAACCTAGTCT 58.675 44.000 6.72 0.00 31.45 3.24
4625 6092 6.788456 GGAAGGGATTATAGGAACCTAGTCTT 59.212 42.308 6.72 4.18 31.45 3.01
4626 6093 7.954620 GGAAGGGATTATAGGAACCTAGTCTTA 59.045 40.741 6.72 0.00 31.45 2.10
4627 6094 8.724113 AAGGGATTATAGGAACCTAGTCTTAC 57.276 38.462 6.72 0.00 31.45 2.34
4628 6095 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
4629 6096 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
4630 6097 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
4631 6098 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
4632 6099 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
4633 6100 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
4634 6101 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
4635 6102 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
4636 6103 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
4637 6104 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
4638 6105 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
4639 6106 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
4640 6107 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
4651 6118 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
4652 6119 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
4653 6120 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
4654 6121 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
4656 6123 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
4657 6124 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
4658 6125 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
4659 6126 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
4660 6127 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
4661 6128 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
4662 6129 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
4663 6130 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
4672 6139 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
4673 6140 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
4674 6141 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
4675 6142 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
4676 6143 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
4677 6144 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
4678 6145 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
4679 6146 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
4680 6147 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
4681 6148 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
4692 6159 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
4693 6160 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
4694 6161 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
4695 6162 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
4696 6163 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
4697 6164 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
4698 6165 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
4704 6171 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
4705 6172 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
4706 6173 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
4707 6174 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
4708 6175 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
4709 6176 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
4710 6177 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
4724 6191 4.247380 CAGGCCTGCCCTCCGATC 62.247 72.222 22.33 0.00 44.09 3.69
4725 6192 4.804420 AGGCCTGCCCTCCGATCA 62.804 66.667 3.11 0.00 41.21 2.92
4726 6193 4.247380 GGCCTGCCCTCCGATCAG 62.247 72.222 0.00 0.00 0.00 2.90
4727 6194 3.474570 GCCTGCCCTCCGATCAGT 61.475 66.667 0.00 0.00 0.00 3.41
4728 6195 2.134287 GCCTGCCCTCCGATCAGTA 61.134 63.158 0.00 0.00 0.00 2.74
4729 6196 1.686325 GCCTGCCCTCCGATCAGTAA 61.686 60.000 0.00 0.00 0.00 2.24
4730 6197 0.390860 CCTGCCCTCCGATCAGTAAG 59.609 60.000 0.00 0.00 0.00 2.34
4731 6198 1.403814 CTGCCCTCCGATCAGTAAGA 58.596 55.000 0.00 0.00 0.00 2.10
4732 6199 1.757118 CTGCCCTCCGATCAGTAAGAA 59.243 52.381 0.00 0.00 0.00 2.52
4733 6200 2.366916 CTGCCCTCCGATCAGTAAGAAT 59.633 50.000 0.00 0.00 0.00 2.40
4734 6201 2.103094 TGCCCTCCGATCAGTAAGAATG 59.897 50.000 0.00 0.00 0.00 2.67
4735 6202 2.548920 GCCCTCCGATCAGTAAGAATGG 60.549 54.545 0.00 0.00 0.00 3.16
4736 6203 2.037772 CCCTCCGATCAGTAAGAATGGG 59.962 54.545 0.00 0.00 0.00 4.00
4737 6204 2.965831 CCTCCGATCAGTAAGAATGGGA 59.034 50.000 0.00 0.00 0.00 4.37
4738 6205 3.388024 CCTCCGATCAGTAAGAATGGGAA 59.612 47.826 0.00 0.00 0.00 3.97
4739 6206 4.502259 CCTCCGATCAGTAAGAATGGGAAG 60.502 50.000 0.00 0.00 0.00 3.46
4740 6207 3.388024 TCCGATCAGTAAGAATGGGAAGG 59.612 47.826 0.00 0.00 0.00 3.46
4741 6208 3.495100 CCGATCAGTAAGAATGGGAAGGG 60.495 52.174 0.00 0.00 0.00 3.95
4742 6209 3.134804 CGATCAGTAAGAATGGGAAGGGT 59.865 47.826 0.00 0.00 0.00 4.34
4743 6210 4.709250 GATCAGTAAGAATGGGAAGGGTC 58.291 47.826 0.00 0.00 0.00 4.46
4744 6211 2.844348 TCAGTAAGAATGGGAAGGGTCC 59.156 50.000 0.00 0.00 44.10 4.46
4745 6212 1.838077 AGTAAGAATGGGAAGGGTCCG 59.162 52.381 0.00 0.00 46.04 4.79
4746 6213 1.835531 GTAAGAATGGGAAGGGTCCGA 59.164 52.381 0.00 0.00 46.04 4.55
4747 6214 0.618981 AAGAATGGGAAGGGTCCGAC 59.381 55.000 0.00 0.00 46.04 4.79
4748 6215 1.223763 GAATGGGAAGGGTCCGACC 59.776 63.158 9.30 9.30 46.04 4.79
4749 6216 1.540367 AATGGGAAGGGTCCGACCA 60.540 57.895 19.43 0.00 46.04 4.02
4750 6217 1.848886 AATGGGAAGGGTCCGACCAC 61.849 60.000 19.43 8.70 46.04 4.16
4751 6218 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4752 6219 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4753 6220 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4754 6221 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4755 6222 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4756 6223 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4757 6224 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4767 6234 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
4768 6235 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
4769 6236 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
4770 6237 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
4771 6238 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
4772 6239 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
4773 6240 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
4774 6241 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
4775 6242 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
4776 6243 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
4777 6244 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
4778 6245 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
4779 6246 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
4780 6247 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
4781 6248 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
4782 6249 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
4783 6250 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
4784 6251 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
4785 6252 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
4786 6253 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
4787 6254 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
4788 6255 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
4789 6256 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
4790 6257 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
4791 6258 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
4792 6259 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
4793 6260 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
4805 6272 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
4806 6273 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
4807 6274 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
4808 6275 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
4809 6276 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
4810 6277 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
4811 6278 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
4812 6279 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
4813 6280 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4814 6281 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4815 6282 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
4816 6283 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
4817 6284 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
4818 6285 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
4819 6286 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
4820 6287 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
4821 6288 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
4822 6289 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
4823 6290 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
4824 6291 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
4825 6292 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
4826 6293 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
4838 6305 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4839 6306 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
4840 6307 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
4841 6308 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4842 6309 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4843 6310 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
4844 6311 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4845 6312 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
4846 6313 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
4847 6314 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4848 6315 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4849 6316 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4850 6317 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4851 6318 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4852 6319 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4853 6320 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4857 6324 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
4858 6325 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
4859 6326 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
4860 6327 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
4861 6328 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
4862 6329 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
4863 6330 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
4864 6331 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
4963 6430 3.198068 TCTTCAAGTGTCTTGCAGTGAC 58.802 45.455 13.02 13.02 35.21 3.67
4987 6459 2.739379 GCACTAGTCTGCCTTCTGTTTC 59.261 50.000 0.00 0.00 0.00 2.78
4989 6461 2.628657 ACTAGTCTGCCTTCTGTTTCGT 59.371 45.455 0.00 0.00 0.00 3.85
5028 6500 1.271217 TGCTGCACTGATCTTTCTGCT 60.271 47.619 0.00 0.00 0.00 4.24
5029 6501 1.811359 GCTGCACTGATCTTTCTGCTT 59.189 47.619 0.00 0.00 0.00 3.91
5030 6502 3.005554 GCTGCACTGATCTTTCTGCTTA 58.994 45.455 0.00 0.00 0.00 3.09
5031 6503 3.181512 GCTGCACTGATCTTTCTGCTTAC 60.182 47.826 0.00 0.00 0.00 2.34
5032 6504 2.995939 TGCACTGATCTTTCTGCTTACG 59.004 45.455 0.00 0.00 0.00 3.18
5033 6505 2.996621 GCACTGATCTTTCTGCTTACGT 59.003 45.455 0.00 0.00 0.00 3.57
5034 6506 4.174009 GCACTGATCTTTCTGCTTACGTA 58.826 43.478 0.00 0.00 0.00 3.57
5035 6507 4.625742 GCACTGATCTTTCTGCTTACGTAA 59.374 41.667 7.94 7.94 0.00 3.18
5036 6508 5.292101 GCACTGATCTTTCTGCTTACGTAAT 59.708 40.000 8.76 0.00 0.00 1.89
5037 6509 6.700020 CACTGATCTTTCTGCTTACGTAATG 58.300 40.000 8.76 4.59 0.00 1.90
5038 6510 5.292101 ACTGATCTTTCTGCTTACGTAATGC 59.708 40.000 8.76 14.27 0.00 3.56
5039 6511 5.419542 TGATCTTTCTGCTTACGTAATGCT 58.580 37.500 21.86 7.68 0.00 3.79
5040 6512 5.874810 TGATCTTTCTGCTTACGTAATGCTT 59.125 36.000 21.86 6.57 0.00 3.91
5041 6513 7.039270 TGATCTTTCTGCTTACGTAATGCTTA 58.961 34.615 21.86 12.35 0.00 3.09
5042 6514 6.642683 TCTTTCTGCTTACGTAATGCTTAC 57.357 37.500 21.86 6.52 0.00 2.34
5043 6515 6.395629 TCTTTCTGCTTACGTAATGCTTACT 58.604 36.000 21.86 0.00 33.98 2.24
5044 6516 6.310467 TCTTTCTGCTTACGTAATGCTTACTG 59.690 38.462 21.86 13.55 33.98 2.74
5045 6517 5.068234 TCTGCTTACGTAATGCTTACTGT 57.932 39.130 21.86 0.00 33.98 3.55
5110 6598 3.304057 GGACTGCTTACTGTTTGCTGTTC 60.304 47.826 14.47 10.84 38.60 3.18
5148 6636 1.155042 CTGGACTTTGCACTCTCAGC 58.845 55.000 0.00 0.00 0.00 4.26
5218 6706 4.114073 TGACAATGCTTGCTGAACTTTTG 58.886 39.130 0.00 0.00 0.00 2.44
5356 6844 3.057526 GCTTAGCTTTTGGTAACCCTGTG 60.058 47.826 0.00 0.00 37.46 3.66
5395 6883 3.674997 TGGTGAAATGCTTGAGTCTACC 58.325 45.455 0.00 0.00 0.00 3.18
5426 6914 3.199946 TGAACCTCTTGAGGTCTGTGTTT 59.800 43.478 21.04 5.32 42.20 2.83
5489 6977 5.931146 TGCCAAATATTTGTTAACCTTGCTG 59.069 36.000 23.24 7.60 36.45 4.41
5490 6978 6.162777 GCCAAATATTTGTTAACCTTGCTGA 58.837 36.000 23.24 0.00 36.45 4.26
5491 6979 6.818142 GCCAAATATTTGTTAACCTTGCTGAT 59.182 34.615 23.24 0.00 36.45 2.90
5492 6980 7.201548 GCCAAATATTTGTTAACCTTGCTGATG 60.202 37.037 23.24 6.53 36.45 3.07
5493 6981 7.818930 CCAAATATTTGTTAACCTTGCTGATGT 59.181 33.333 23.24 0.00 36.45 3.06
5495 6983 9.855021 AAATATTTGTTAACCTTGCTGATGTAC 57.145 29.630 2.48 0.00 0.00 2.90
5496 6984 6.892658 ATTTGTTAACCTTGCTGATGTACA 57.107 33.333 0.00 0.00 0.00 2.90
5497 6985 6.892658 TTTGTTAACCTTGCTGATGTACAT 57.107 33.333 8.43 8.43 0.00 2.29
5704 7242 4.009675 TGCTGGAGGTATGTTTTGTCATC 58.990 43.478 0.00 0.00 0.00 2.92
6391 8410 8.413229 CAAGTTTTTCTTTCACCCAGATTCTTA 58.587 33.333 0.00 0.00 33.63 2.10
6714 8769 3.942130 AACTGAGCTAAAATTGTGGCC 57.058 42.857 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.254462 GCTGGGAGGAAGGAAGGAAG 59.746 60.000 0.00 0.00 0.00 3.46
67 68 0.475632 TGCTGGGAGGAAGGAAGGAA 60.476 55.000 0.00 0.00 0.00 3.36
68 69 0.475632 TTGCTGGGAGGAAGGAAGGA 60.476 55.000 0.00 0.00 0.00 3.36
69 70 0.034670 CTTGCTGGGAGGAAGGAAGG 60.035 60.000 0.00 0.00 39.61 3.46
70 71 0.679321 GCTTGCTGGGAGGAAGGAAG 60.679 60.000 6.93 0.85 42.93 3.46
106 107 1.537202 AGCATGCTGAAAACGGAAGAC 59.463 47.619 21.98 0.00 0.00 3.01
111 112 6.959361 ACTAATAATAGCATGCTGAAAACGG 58.041 36.000 30.42 16.44 31.96 4.44
144 149 2.037641 AGTCATAACAGACAGCACTGCA 59.962 45.455 3.30 0.00 40.98 4.41
155 160 6.815641 ACTTCACTCATAGCAAGTCATAACAG 59.184 38.462 0.00 0.00 0.00 3.16
261 273 0.947244 CTGCAAGGTGTGAACTGGTC 59.053 55.000 0.00 0.00 0.00 4.02
286 298 3.370840 AACCATATGAAGAAGCCAGCA 57.629 42.857 3.65 0.00 0.00 4.41
294 306 8.264347 TGCACTATTCAGTTAACCATATGAAGA 58.736 33.333 3.65 7.85 35.31 2.87
302 314 6.544197 TGAACTTTGCACTATTCAGTTAACCA 59.456 34.615 0.88 0.00 30.46 3.67
371 386 0.529773 GTATGCCTCCGACGCAATCA 60.530 55.000 0.00 0.00 40.22 2.57
377 392 1.927174 CAGAAAAGTATGCCTCCGACG 59.073 52.381 0.00 0.00 0.00 5.12
380 395 2.416547 CACACAGAAAAGTATGCCTCCG 59.583 50.000 0.00 0.00 0.00 4.63
389 404 6.318648 TGCTACTTCAAATCACACAGAAAAGT 59.681 34.615 0.00 0.00 0.00 2.66
393 408 9.317936 CTATATGCTACTTCAAATCACACAGAA 57.682 33.333 0.00 0.00 0.00 3.02
396 411 6.483307 GGCTATATGCTACTTCAAATCACACA 59.517 38.462 0.00 0.00 42.39 3.72
417 432 8.696374 GCTACAGAACATTCCTATATATGGCTA 58.304 37.037 0.00 0.00 0.00 3.93
418 433 7.365117 GGCTACAGAACATTCCTATATATGGCT 60.365 40.741 0.00 0.00 0.00 4.75
419 434 6.763610 GGCTACAGAACATTCCTATATATGGC 59.236 42.308 0.00 0.00 0.00 4.40
420 435 7.851228 TGGCTACAGAACATTCCTATATATGG 58.149 38.462 0.00 0.00 0.00 2.74
442 457 2.123428 CACCCCTGCAAGCTATGGC 61.123 63.158 0.00 0.00 39.06 4.40
443 458 1.454479 CCACCCCTGCAAGCTATGG 60.454 63.158 0.00 0.00 0.00 2.74
500 515 7.075851 TCTGAGAATTCATAGATCAGCCAAT 57.924 36.000 13.97 0.00 37.81 3.16
504 519 4.931002 GGCTCTGAGAATTCATAGATCAGC 59.069 45.833 9.28 12.12 37.81 4.26
505 520 6.099159 TGGCTCTGAGAATTCATAGATCAG 57.901 41.667 9.28 11.22 38.97 2.90
510 525 5.021033 ACACTGGCTCTGAGAATTCATAG 57.979 43.478 9.28 5.48 32.32 2.23
522 537 4.781934 ACTACAAAAGAAACACTGGCTCT 58.218 39.130 0.00 0.00 0.00 4.09
523 538 6.803154 ATACTACAAAAGAAACACTGGCTC 57.197 37.500 0.00 0.00 0.00 4.70
539 554 9.276590 CAATGATCCATCTAAGCAAATACTACA 57.723 33.333 0.00 0.00 0.00 2.74
544 563 9.851686 AGTTACAATGATCCATCTAAGCAAATA 57.148 29.630 0.00 0.00 0.00 1.40
548 567 6.653020 ACAGTTACAATGATCCATCTAAGCA 58.347 36.000 0.00 0.00 0.00 3.91
553 572 8.489489 AGTGATAACAGTTACAATGATCCATCT 58.511 33.333 0.00 0.00 0.00 2.90
587 606 8.784043 CCGGTAAATAAGGAAAGATTATTCAGG 58.216 37.037 0.00 0.00 32.90 3.86
595 614 7.745717 TGATGATCCGGTAAATAAGGAAAGAT 58.254 34.615 0.00 0.00 37.62 2.40
596 615 7.070696 TCTGATGATCCGGTAAATAAGGAAAGA 59.929 37.037 0.00 0.00 37.62 2.52
601 620 5.409826 GCTTCTGATGATCCGGTAAATAAGG 59.590 44.000 0.00 0.00 0.00 2.69
603 622 5.758296 GTGCTTCTGATGATCCGGTAAATAA 59.242 40.000 0.00 0.00 0.00 1.40
608 627 1.412710 GGTGCTTCTGATGATCCGGTA 59.587 52.381 0.00 0.00 0.00 4.02
611 630 0.103026 TCGGTGCTTCTGATGATCCG 59.897 55.000 15.19 15.19 38.16 4.18
619 638 0.671781 CAGGAACCTCGGTGCTTCTG 60.672 60.000 0.00 0.00 0.00 3.02
659 678 9.270640 GCAATAGACAATATTTCTCATGACTCT 57.729 33.333 0.00 0.00 0.00 3.24
661 680 9.624373 AAGCAATAGACAATATTTCTCATGACT 57.376 29.630 0.00 0.00 0.00 3.41
662 681 9.875675 GAAGCAATAGACAATATTTCTCATGAC 57.124 33.333 0.00 0.00 0.00 3.06
682 701 5.070770 ACAAACAGAACATTGTGAAGCAA 57.929 34.783 0.00 0.00 38.29 3.91
697 716 7.257003 TGCATAAACAGGCATTATACAAACAG 58.743 34.615 0.00 0.00 34.58 3.16
698 717 7.163001 TGCATAAACAGGCATTATACAAACA 57.837 32.000 0.00 0.00 34.58 2.83
735 754 2.502130 TGGTCCAATGGATACTACGCAA 59.498 45.455 4.81 0.00 32.73 4.85
737 756 2.755650 CTGGTCCAATGGATACTACGC 58.244 52.381 4.81 0.00 32.73 4.42
738 757 2.102420 TGCTGGTCCAATGGATACTACG 59.898 50.000 4.81 0.00 32.73 3.51
739 758 3.838244 TGCTGGTCCAATGGATACTAC 57.162 47.619 4.81 0.00 32.73 2.73
740 759 3.780294 AGTTGCTGGTCCAATGGATACTA 59.220 43.478 4.81 0.00 32.73 1.82
741 760 2.578021 AGTTGCTGGTCCAATGGATACT 59.422 45.455 4.81 0.21 32.73 2.12
743 762 3.737559 AAGTTGCTGGTCCAATGGATA 57.262 42.857 4.81 0.00 32.73 2.59
744 763 2.564062 CAAAGTTGCTGGTCCAATGGAT 59.436 45.455 4.81 0.00 32.73 3.41
745 764 1.962807 CAAAGTTGCTGGTCCAATGGA 59.037 47.619 0.00 0.00 0.00 3.41
746 765 1.688197 ACAAAGTTGCTGGTCCAATGG 59.312 47.619 0.00 0.00 0.00 3.16
747 766 3.068590 AGAACAAAGTTGCTGGTCCAATG 59.931 43.478 0.00 0.00 30.29 2.82
749 768 2.733956 AGAACAAAGTTGCTGGTCCAA 58.266 42.857 0.00 0.00 30.29 3.53
750 769 2.435372 AGAACAAAGTTGCTGGTCCA 57.565 45.000 0.00 0.00 30.29 4.02
751 770 2.226674 GCTAGAACAAAGTTGCTGGTCC 59.773 50.000 0.00 0.00 30.29 4.46
753 772 2.930950 TGCTAGAACAAAGTTGCTGGT 58.069 42.857 0.00 0.00 0.00 4.00
754 773 3.254166 ACATGCTAGAACAAAGTTGCTGG 59.746 43.478 0.00 0.00 0.00 4.85
755 774 4.494350 ACATGCTAGAACAAAGTTGCTG 57.506 40.909 0.00 0.00 0.00 4.41
756 775 5.163519 ACAAACATGCTAGAACAAAGTTGCT 60.164 36.000 0.00 0.00 0.00 3.91
757 776 5.043248 ACAAACATGCTAGAACAAAGTTGC 58.957 37.500 0.00 0.00 0.00 4.17
758 777 7.275341 TGAAACAAACATGCTAGAACAAAGTTG 59.725 33.333 0.00 0.00 0.00 3.16
759 778 7.319646 TGAAACAAACATGCTAGAACAAAGTT 58.680 30.769 0.00 0.00 0.00 2.66
760 779 6.862209 TGAAACAAACATGCTAGAACAAAGT 58.138 32.000 0.00 0.00 0.00 2.66
761 780 7.935338 ATGAAACAAACATGCTAGAACAAAG 57.065 32.000 0.00 0.00 0.00 2.77
785 804 6.014755 TGGTTCATCCAACATGAATAGCAAAA 60.015 34.615 0.00 0.00 44.12 2.44
819 838 5.880887 ACAAGCTAATTTCTACCTGCCTAAC 59.119 40.000 0.00 0.00 0.00 2.34
847 866 8.862074 CGAACATGATCAAATAGCAAAATGAAA 58.138 29.630 0.00 0.00 0.00 2.69
850 869 7.745022 ACGAACATGATCAAATAGCAAAATG 57.255 32.000 0.00 0.00 0.00 2.32
851 870 8.131100 CCTACGAACATGATCAAATAGCAAAAT 58.869 33.333 0.00 0.00 0.00 1.82
852 871 7.471721 CCTACGAACATGATCAAATAGCAAAA 58.528 34.615 0.00 0.00 0.00 2.44
853 872 6.458206 GCCTACGAACATGATCAAATAGCAAA 60.458 38.462 0.00 0.00 0.00 3.68
859 878 3.884895 TGGCCTACGAACATGATCAAAT 58.115 40.909 3.32 0.00 0.00 2.32
861 880 3.205338 CATGGCCTACGAACATGATCAA 58.795 45.455 3.32 0.00 43.46 2.57
873 917 0.912486 AACCAGGAGACATGGCCTAC 59.088 55.000 3.32 0.00 41.87 3.18
877 921 0.257039 ATGGAACCAGGAGACATGGC 59.743 55.000 0.00 0.00 41.87 4.40
882 926 3.695830 TGTAACATGGAACCAGGAGAC 57.304 47.619 12.42 9.36 0.00 3.36
884 928 3.753272 CAGTTGTAACATGGAACCAGGAG 59.247 47.826 12.42 1.40 0.00 3.69
915 959 3.681593 ACTAGCCGAAAAGCCACATTAA 58.318 40.909 0.00 0.00 0.00 1.40
925 969 8.385898 TGAAGAGAAATAAAACTAGCCGAAAA 57.614 30.769 0.00 0.00 0.00 2.29
929 973 6.969828 ACTGAAGAGAAATAAAACTAGCCG 57.030 37.500 0.00 0.00 0.00 5.52
968 1018 5.864418 ATTGTGCAAATCTGATAAGCCAT 57.136 34.783 10.51 0.67 0.00 4.40
969 1019 5.664294 AATTGTGCAAATCTGATAAGCCA 57.336 34.783 10.51 6.57 0.00 4.75
985 1035 5.406175 CCTGGAACATTTACAGCAAATTGTG 59.594 40.000 0.00 0.00 38.20 3.33
1026 1080 7.062957 TGTGATTGAGACTCTGTCTATCCATA 58.937 38.462 3.68 0.00 43.53 2.74
1042 1096 2.485426 AGTCATTGCGGTTGTGATTGAG 59.515 45.455 0.00 0.00 0.00 3.02
1043 1097 2.503331 AGTCATTGCGGTTGTGATTGA 58.497 42.857 0.00 0.00 0.00 2.57
1047 1101 1.202758 AGGAAGTCATTGCGGTTGTGA 60.203 47.619 0.00 0.00 0.00 3.58
1119 1173 4.994471 CTGTCACGCTGCAGGCCA 62.994 66.667 17.12 0.00 37.74 5.36
1134 1188 0.518636 CCATGGTCTGTTCGTTGCTG 59.481 55.000 2.57 0.00 0.00 4.41
1140 1194 2.602257 TATCAGCCATGGTCTGTTCG 57.398 50.000 25.67 9.36 33.48 3.95
1201 1255 2.000803 TCTAGAGAGTGAGGGTCCCAA 58.999 52.381 11.55 0.00 0.00 4.12
1239 1293 1.001760 TACCCTCCTCACCAGCTCC 59.998 63.158 0.00 0.00 0.00 4.70
1347 1407 2.674852 CAGATCATCAGGTTCACCAACG 59.325 50.000 0.00 0.00 38.89 4.10
1386 1446 4.691175 CTCTCGATGATGACAGGTTCATT 58.309 43.478 0.00 0.00 45.67 2.57
1401 1461 0.394565 GCCCATTACCAGCTCTCGAT 59.605 55.000 0.00 0.00 0.00 3.59
1527 1587 1.555967 GTGCCCTAAAATGCCCTTGA 58.444 50.000 0.00 0.00 0.00 3.02
1590 1659 6.539826 CAGATGATGTGAAGTTACCAGCATTA 59.460 38.462 6.48 0.00 0.00 1.90
1650 1719 1.678970 GGACCTTGCGCCAATCCTT 60.679 57.895 4.18 0.00 0.00 3.36
1776 1845 7.661437 GCAAGGTACTGAACATATAATGGATCA 59.339 37.037 0.00 0.00 40.86 2.92
1782 1851 5.765182 GGCAGCAAGGTACTGAACATATAAT 59.235 40.000 0.00 0.00 40.86 1.28
1818 1887 5.537674 GGCCATGAAAGGATCATCATAACTT 59.462 40.000 0.00 0.00 45.91 2.66
1983 2052 0.474660 AGGAGGGCAGAACAGGACTT 60.475 55.000 0.00 0.00 0.00 3.01
2001 2070 2.625737 CTACCAGATGCAACAGGTGAG 58.374 52.381 19.46 9.93 35.62 3.51
2208 2277 4.693283 CAGAAGTGTACCTGAACTCAACA 58.307 43.478 0.00 0.00 32.37 3.33
2290 2604 1.931635 TTCTGTTGGGTATTTGGCCC 58.068 50.000 0.00 0.00 46.26 5.80
2332 2651 9.699410 ACTTTTCATTATTGGGTGATCAGAATA 57.301 29.630 0.00 0.00 0.00 1.75
2333 2652 8.472413 CACTTTTCATTATTGGGTGATCAGAAT 58.528 33.333 0.00 0.00 0.00 2.40
2334 2653 7.451255 ACACTTTTCATTATTGGGTGATCAGAA 59.549 33.333 0.00 0.00 0.00 3.02
2335 2654 6.947733 ACACTTTTCATTATTGGGTGATCAGA 59.052 34.615 0.00 0.00 0.00 3.27
2613 3029 1.235724 GGTCAGTACCCTGTGCAAAC 58.764 55.000 0.00 0.00 40.21 2.93
3232 4067 3.069586 CCCAATCTCAACACGCTATAGGA 59.930 47.826 1.04 0.00 0.00 2.94
3242 4077 5.867903 AAAATGAACACCCAATCTCAACA 57.132 34.783 0.00 0.00 0.00 3.33
3279 4114 9.878667 TGTTTTCCTAGATAACGTATGAATCAA 57.121 29.630 0.00 0.00 0.00 2.57
3407 4242 6.795399 TCAAGCTACAGAAAAGTCAAAAAGG 58.205 36.000 0.00 0.00 0.00 3.11
3530 4372 5.072193 TGCTTGCTCCAGAAATCCTCATATA 59.928 40.000 0.00 0.00 0.00 0.86
3630 4481 7.654520 GGTTATATGTTTGAGCGTTCCAGTATA 59.345 37.037 0.00 0.00 0.00 1.47
3640 4504 4.747108 CAGGAGAGGTTATATGTTTGAGCG 59.253 45.833 0.00 0.00 0.00 5.03
3723 4760 5.038651 TCATCACATGACATAAGATGCCA 57.961 39.130 17.95 5.86 36.81 4.92
3785 4822 5.009010 CAGTTCAGCAACCATTTTAGTCTGT 59.991 40.000 0.00 0.00 32.22 3.41
3806 4843 1.744798 CGCATGATGTGTCCATCCAGT 60.745 52.381 0.00 0.00 45.78 4.00
3818 4855 0.025384 CACGTACACAGCGCATGATG 59.975 55.000 17.51 5.75 37.57 3.07
3914 4951 3.441572 GCAGCACAACTTGACCATAGAAT 59.558 43.478 0.00 0.00 0.00 2.40
3988 5033 6.623486 TCAAAATGTATCAAGGAGCATGTTG 58.377 36.000 0.00 0.00 37.70 3.33
4041 5098 7.279536 GGTAATTCACATGATATGATGAGCGAT 59.720 37.037 9.30 0.00 0.00 4.58
4093 5150 0.676466 TTATCTGCTGCGTTGTGGGG 60.676 55.000 0.00 0.00 0.00 4.96
4102 5159 4.576879 TCTCATCCATCATTATCTGCTGC 58.423 43.478 0.00 0.00 0.00 5.25
4129 5186 2.694628 AGCCAGCAAACAAACAGATTGA 59.305 40.909 0.00 0.00 41.85 2.57
4132 5189 2.295349 CTGAGCCAGCAAACAAACAGAT 59.705 45.455 0.00 0.00 0.00 2.90
4141 5198 2.519771 ATTGATCCTGAGCCAGCAAA 57.480 45.000 0.00 0.00 0.00 3.68
4153 5210 9.337396 TGAACAACATAGTTACCATATTGATCC 57.663 33.333 0.00 0.00 0.00 3.36
4201 5258 4.154015 TCAAGGTATGCAACAATGTTCGAG 59.846 41.667 0.00 0.00 0.00 4.04
4242 5299 0.945743 CACGCAGTAGTGAAGCAGCA 60.946 55.000 0.42 0.00 41.61 4.41
4258 5315 2.695359 AGCCAACTACATTACACCACG 58.305 47.619 0.00 0.00 0.00 4.94
4260 5317 5.650266 CCAAATAGCCAACTACATTACACCA 59.350 40.000 0.00 0.00 0.00 4.17
4283 5749 3.550437 ACCTTCAGATGATACTGCACC 57.450 47.619 0.00 0.00 37.75 5.01
4347 5813 5.704515 GGAGGGAGTACAAAAGGAAAACTAC 59.295 44.000 0.00 0.00 0.00 2.73
4424 5890 7.716799 TTGGATTTATTTGGTATTGCAGACT 57.283 32.000 1.37 0.00 0.00 3.24
4480 5946 7.876582 TCAACATTCACAATGCCAAATCAATAA 59.123 29.630 0.00 0.00 42.69 1.40
4489 5955 9.887629 AAAAATATATCAACATTCACAATGCCA 57.112 25.926 0.00 0.00 42.69 4.92
4519 5986 7.480810 ACATTCTGAAGTTTGACCAAGTTTAC 58.519 34.615 0.00 0.00 0.00 2.01
4542 6009 4.457466 GGTCTGTCCCTTAAGTCAAAACA 58.543 43.478 0.97 0.00 0.00 2.83
4556 6023 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
4557 6024 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
4558 6025 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
4559 6026 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
4560 6027 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
4561 6028 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
4562 6029 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
4563 6030 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
4564 6031 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
4565 6032 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
4566 6033 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
4567 6034 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
4568 6035 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
4569 6036 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
4570 6037 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
4571 6038 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
4572 6039 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
4573 6040 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
4574 6041 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
4575 6042 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
4582 6049 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
4583 6050 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
4584 6051 1.715019 TTCCCAGACCCCACCTTGTG 61.715 60.000 0.00 0.00 0.00 3.33
4585 6052 1.386772 TTCCCAGACCCCACCTTGT 60.387 57.895 0.00 0.00 0.00 3.16
4586 6053 1.380302 CTTCCCAGACCCCACCTTG 59.620 63.158 0.00 0.00 0.00 3.61
4587 6054 1.852626 CCTTCCCAGACCCCACCTT 60.853 63.158 0.00 0.00 0.00 3.50
4588 6055 2.204151 CCTTCCCAGACCCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
4589 6056 3.339093 CCCTTCCCAGACCCCACC 61.339 72.222 0.00 0.00 0.00 4.61
4590 6057 1.214992 AATCCCTTCCCAGACCCCAC 61.215 60.000 0.00 0.00 0.00 4.61
4591 6058 0.423956 TAATCCCTTCCCAGACCCCA 59.576 55.000 0.00 0.00 0.00 4.96
4592 6059 1.834540 ATAATCCCTTCCCAGACCCC 58.165 55.000 0.00 0.00 0.00 4.95
4593 6060 2.913617 CCTATAATCCCTTCCCAGACCC 59.086 54.545 0.00 0.00 0.00 4.46
4594 6061 3.870559 TCCTATAATCCCTTCCCAGACC 58.129 50.000 0.00 0.00 0.00 3.85
4595 6062 4.041815 GGTTCCTATAATCCCTTCCCAGAC 59.958 50.000 0.00 0.00 0.00 3.51
4596 6063 4.077387 AGGTTCCTATAATCCCTTCCCAGA 60.077 45.833 0.00 0.00 0.00 3.86
4597 6064 4.243643 AGGTTCCTATAATCCCTTCCCAG 58.756 47.826 0.00 0.00 0.00 4.45
4598 6065 4.311208 AGGTTCCTATAATCCCTTCCCA 57.689 45.455 0.00 0.00 0.00 4.37
4599 6066 5.413277 ACTAGGTTCCTATAATCCCTTCCC 58.587 45.833 0.00 0.00 0.00 3.97
4600 6067 6.324544 AGACTAGGTTCCTATAATCCCTTCC 58.675 44.000 0.00 0.00 0.00 3.46
4601 6068 7.859026 AAGACTAGGTTCCTATAATCCCTTC 57.141 40.000 0.00 0.00 0.00 3.46
4602 6069 7.733955 GGTAAGACTAGGTTCCTATAATCCCTT 59.266 40.741 0.00 0.00 0.00 3.95
4603 6070 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
4604 6071 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
4605 6072 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
4606 6073 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
4607 6074 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
4608 6075 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
4609 6076 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
4610 6077 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
4611 6078 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
4612 6079 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
4613 6080 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
4614 6081 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
4615 6082 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
4616 6083 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
4617 6084 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
4618 6085 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
4619 6086 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
4620 6087 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
4621 6088 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
4622 6089 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
4632 6099 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
4633 6100 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
4634 6101 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
4635 6102 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
4636 6103 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
4637 6104 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
4638 6105 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
4639 6106 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
4640 6107 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
4641 6108 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
4642 6109 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
4643 6110 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
4644 6111 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
4645 6112 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
4656 6123 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
4657 6124 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
4658 6125 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
4659 6126 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
4660 6127 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
4661 6128 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
4662 6129 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
4663 6130 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
4664 6131 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
4665 6132 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
4666 6133 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
4667 6134 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
4668 6135 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
4669 6136 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
4670 6137 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
4671 6138 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
4672 6139 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
4673 6140 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
4674 6141 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
4675 6142 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
4676 6143 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
4677 6144 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
4678 6145 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
4679 6146 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
4680 6147 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
4681 6148 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
4682 6149 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
4683 6150 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
4684 6151 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
4685 6152 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
4686 6153 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
4687 6154 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
4688 6155 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
4689 6156 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
4690 6157 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
4691 6158 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
4692 6159 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
4693 6160 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
4707 6174 4.247380 GATCGGAGGGCAGGCCTG 62.247 72.222 29.34 29.34 36.10 4.85
4708 6175 4.804420 TGATCGGAGGGCAGGCCT 62.804 66.667 17.36 17.36 36.10 5.19
4709 6176 4.247380 CTGATCGGAGGGCAGGCC 62.247 72.222 4.33 4.33 0.00 5.19
4710 6177 1.686325 TTACTGATCGGAGGGCAGGC 61.686 60.000 9.00 0.00 34.39 4.85
4711 6178 0.390860 CTTACTGATCGGAGGGCAGG 59.609 60.000 9.00 0.00 34.39 4.85
4712 6179 1.403814 TCTTACTGATCGGAGGGCAG 58.596 55.000 9.00 0.00 35.75 4.85
4713 6180 1.860641 TTCTTACTGATCGGAGGGCA 58.139 50.000 9.00 0.00 0.00 5.36
4714 6181 2.548920 CCATTCTTACTGATCGGAGGGC 60.549 54.545 9.00 0.00 0.00 5.19
4715 6182 2.037772 CCCATTCTTACTGATCGGAGGG 59.962 54.545 9.00 3.98 0.00 4.30
4716 6183 2.965831 TCCCATTCTTACTGATCGGAGG 59.034 50.000 9.00 0.00 0.00 4.30
4717 6184 4.502259 CCTTCCCATTCTTACTGATCGGAG 60.502 50.000 9.00 0.00 0.00 4.63
4718 6185 3.388024 CCTTCCCATTCTTACTGATCGGA 59.612 47.826 9.00 0.00 0.00 4.55
4719 6186 3.495100 CCCTTCCCATTCTTACTGATCGG 60.495 52.174 0.00 0.00 0.00 4.18
4720 6187 3.134804 ACCCTTCCCATTCTTACTGATCG 59.865 47.826 0.00 0.00 0.00 3.69
4721 6188 4.445019 GGACCCTTCCCATTCTTACTGATC 60.445 50.000 0.00 0.00 35.57 2.92
4722 6189 3.459969 GGACCCTTCCCATTCTTACTGAT 59.540 47.826 0.00 0.00 35.57 2.90
4723 6190 2.844348 GGACCCTTCCCATTCTTACTGA 59.156 50.000 0.00 0.00 35.57 3.41
4724 6191 2.420129 CGGACCCTTCCCATTCTTACTG 60.420 54.545 0.00 0.00 38.99 2.74
4725 6192 1.838077 CGGACCCTTCCCATTCTTACT 59.162 52.381 0.00 0.00 38.99 2.24
4726 6193 1.835531 TCGGACCCTTCCCATTCTTAC 59.164 52.381 0.00 0.00 38.99 2.34
4727 6194 1.835531 GTCGGACCCTTCCCATTCTTA 59.164 52.381 0.00 0.00 38.99 2.10
4728 6195 0.618981 GTCGGACCCTTCCCATTCTT 59.381 55.000 0.00 0.00 38.99 2.52
4729 6196 1.272554 GGTCGGACCCTTCCCATTCT 61.273 60.000 16.55 0.00 38.99 2.40
4730 6197 1.223763 GGTCGGACCCTTCCCATTC 59.776 63.158 16.55 0.00 38.99 2.67
4731 6198 1.540367 TGGTCGGACCCTTCCCATT 60.540 57.895 23.81 0.00 38.99 3.16
4732 6199 2.124085 TGGTCGGACCCTTCCCAT 59.876 61.111 23.81 0.00 38.99 4.00
4733 6200 2.926242 GTGGTCGGACCCTTCCCA 60.926 66.667 23.81 1.47 38.99 4.37
4734 6201 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4735 6202 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4736 6203 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4737 6204 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4738 6205 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4739 6206 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4740 6207 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4741 6208 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4746 6213 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
4747 6214 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
4748 6215 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
4749 6216 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
4750 6217 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
4751 6218 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
4752 6219 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
4753 6220 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
4754 6221 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
4755 6222 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
4756 6223 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
4757 6224 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
4758 6225 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
4759 6226 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
4760 6227 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
4761 6228 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
4762 6229 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
4763 6230 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
4764 6231 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
4765 6232 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
4766 6233 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
4767 6234 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
4768 6235 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
4769 6236 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
4770 6237 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
4771 6238 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
4772 6239 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
4773 6240 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
4774 6241 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
4775 6242 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
4776 6243 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
4777 6244 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
4778 6245 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
4779 6246 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
4780 6247 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
4781 6248 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
4782 6249 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
4783 6250 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
4797 6264 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
4798 6265 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
4799 6266 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
4800 6267 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
4801 6268 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
4802 6269 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
4803 6270 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
4804 6271 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
4805 6272 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
4806 6273 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
4821 6288 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
4822 6289 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
4823 6290 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
4824 6291 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
4825 6292 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
4826 6293 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
4827 6294 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4828 6295 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4829 6296 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4830 6297 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
4831 6298 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
4832 6299 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
4833 6300 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
4834 6301 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
4835 6302 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
4840 6307 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
4841 6308 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
4842 6309 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
4843 6310 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
4844 6311 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
4845 6312 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
4846 6313 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
4854 6321 1.910580 TAAGAAGGGGAGCCTTGGCG 61.911 60.000 5.95 0.00 0.00 5.69
4855 6322 0.331616 TTAAGAAGGGGAGCCTTGGC 59.668 55.000 2.97 2.97 0.00 4.52
4856 6323 2.024941 ACATTAAGAAGGGGAGCCTTGG 60.025 50.000 0.00 0.00 0.00 3.61
4857 6324 3.372440 ACATTAAGAAGGGGAGCCTTG 57.628 47.619 0.00 0.00 0.00 3.61
4858 6325 4.404185 AAACATTAAGAAGGGGAGCCTT 57.596 40.909 0.00 0.00 0.00 4.35
4859 6326 4.089361 CAAAACATTAAGAAGGGGAGCCT 58.911 43.478 0.00 0.00 0.00 4.58
4860 6327 4.082190 GTCAAAACATTAAGAAGGGGAGCC 60.082 45.833 0.00 0.00 0.00 4.70
4861 6328 4.767409 AGTCAAAACATTAAGAAGGGGAGC 59.233 41.667 0.00 0.00 0.00 4.70
4862 6329 6.901081 AAGTCAAAACATTAAGAAGGGGAG 57.099 37.500 0.00 0.00 0.00 4.30
4863 6330 8.221944 TCTTAAGTCAAAACATTAAGAAGGGGA 58.778 33.333 1.63 0.00 40.66 4.81
4864 6331 8.297426 GTCTTAAGTCAAAACATTAAGAAGGGG 58.703 37.037 1.63 0.00 43.46 4.79
4865 6332 8.846211 TGTCTTAAGTCAAAACATTAAGAAGGG 58.154 33.333 1.63 0.00 43.46 3.95
4963 6430 0.901124 AGAAGGCAGACTAGTGCAGG 59.099 55.000 0.00 0.00 45.93 4.85
4987 6459 1.845266 CCTGCAGATGCTACTACACG 58.155 55.000 17.39 0.00 42.66 4.49
4989 6461 1.137675 CAGCCTGCAGATGCTACTACA 59.862 52.381 17.39 0.00 42.66 2.74
5033 6505 9.550406 ACAGTAAACAGTAAACAGTAAGCATTA 57.450 29.630 0.00 0.00 0.00 1.90
5034 6506 8.446599 ACAGTAAACAGTAAACAGTAAGCATT 57.553 30.769 0.00 0.00 0.00 3.56
5035 6507 8.446599 AACAGTAAACAGTAAACAGTAAGCAT 57.553 30.769 0.00 0.00 0.00 3.79
5036 6508 7.852971 AACAGTAAACAGTAAACAGTAAGCA 57.147 32.000 0.00 0.00 0.00 3.91
5043 6515 9.828852 CACTTGTTAAACAGTAAACAGTAAACA 57.171 29.630 2.56 3.77 36.96 2.83
5044 6516 9.281075 CCACTTGTTAAACAGTAAACAGTAAAC 57.719 33.333 2.56 0.00 36.96 2.01
5045 6517 9.228949 TCCACTTGTTAAACAGTAAACAGTAAA 57.771 29.630 2.56 0.00 36.96 2.01
5110 6598 7.499292 AGTCCAGATCTCAGTATTCATCAAAG 58.501 38.462 0.00 0.00 0.00 2.77
5148 6636 7.094592 GGGAACAGAAGGTTAAAAATCTCAGAG 60.095 40.741 0.00 0.00 40.63 3.35
5356 6844 0.942962 CAATCAAGATCTGCCGCTCC 59.057 55.000 0.00 0.00 0.00 4.70
5395 6883 3.812053 CCTCAAGAGGTTCACTTTCAGTG 59.188 47.826 7.98 0.00 44.15 3.66
5489 6977 5.455392 GCAAGGACATATGCAATGTACATC 58.545 41.667 19.74 0.00 42.12 3.06
5490 6978 5.443185 GCAAGGACATATGCAATGTACAT 57.557 39.130 19.74 1.41 42.12 2.29
5491 6979 4.898829 GCAAGGACATATGCAATGTACA 57.101 40.909 19.74 0.00 42.12 2.90
5704 7242 7.927048 TCTTCATGCTGAATCTGTGAATATTG 58.073 34.615 0.00 0.00 35.59 1.90
6391 8410 4.022329 GCTTGGCAGTAAATACCAAACACT 60.022 41.667 0.00 0.00 42.65 3.55
6714 8769 3.691118 CACAAGGGTATGGACAGTTCATG 59.309 47.826 4.35 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.