Multiple sequence alignment - TraesCS1B01G036300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G036300 chr1B 100.000 5400 0 0 1 5400 17342494 17347893 0.000000e+00 9973
1 TraesCS1B01G036300 chr1B 87.761 1724 188 14 1 1716 17016644 17014936 0.000000e+00 1993
2 TraesCS1B01G036300 chr1B 87.191 1741 217 4 1 1740 16892444 16894179 0.000000e+00 1975
3 TraesCS1B01G036300 chr1B 89.014 1602 165 7 1 1596 16858644 16860240 0.000000e+00 1973
4 TraesCS1B01G036300 chr1B 91.683 1022 63 14 1994 3001 16843753 16844766 0.000000e+00 1397
5 TraesCS1B01G036300 chr1B 90.873 1019 72 13 1994 3001 16894477 16895485 0.000000e+00 1347
6 TraesCS1B01G036300 chr1B 92.244 851 51 8 3837 4687 16895485 16896320 0.000000e+00 1192
7 TraesCS1B01G036300 chr1B 89.677 959 53 13 3837 4788 16844766 16845685 0.000000e+00 1181
8 TraesCS1B01G036300 chr1B 88.341 669 52 13 2343 3001 16694084 16694736 0.000000e+00 780
9 TraesCS1B01G036300 chr1B 91.129 372 5 10 4787 5158 16845986 16846329 3.780000e-131 479
10 TraesCS1B01G036300 chr1B 75.875 514 59 36 3946 4414 16694436 16694929 9.170000e-48 202
11 TraesCS1B01G036300 chrUn 100.000 1740 0 0 1 1740 2471984 2470245 0.000000e+00 3214
12 TraesCS1B01G036300 chrUn 100.000 1740 0 0 1 1740 345525279 345527018 0.000000e+00 3214
13 TraesCS1B01G036300 chrUn 99.813 1603 3 0 1752 3354 385680082 385678480 0.000000e+00 2944
14 TraesCS1B01G036300 chrUn 88.235 323 27 9 4358 4676 104470779 104470464 5.110000e-100 375
15 TraesCS1B01G036300 chr1A 88.585 1717 188 4 1 1716 13571799 13573508 0.000000e+00 2078
16 TraesCS1B01G036300 chr1A 88.809 1662 177 5 3 1663 13455292 13456945 0.000000e+00 2030
17 TraesCS1B01G036300 chr1A 87.914 1721 194 10 1 1716 13416243 13417954 0.000000e+00 2013
18 TraesCS1B01G036300 chr1A 81.647 850 95 35 3042 3837 505557316 505558158 0.000000e+00 649
19 TraesCS1B01G036300 chr1A 84.385 602 61 20 4087 4677 13319431 13320010 1.310000e-155 560
20 TraesCS1B01G036300 chr1A 81.004 558 59 31 4083 4638 13574715 13575227 3.030000e-107 399
21 TraesCS1B01G036300 chr1A 94.239 243 12 2 5160 5400 60804661 60804903 2.380000e-98 370
22 TraesCS1B01G036300 chr1D 89.900 1604 160 2 1 1604 11456222 11457823 0.000000e+00 2063
23 TraesCS1B01G036300 chr1D 80.837 908 93 32 3000 3837 456131576 456130680 5.900000e-179 638
24 TraesCS1B01G036300 chr1D 88.235 323 27 9 4358 4676 475030355 475030670 5.110000e-100 375
25 TraesCS1B01G036300 chr1D 88.235 323 27 9 4358 4676 482642019 482641704 5.110000e-100 375
26 TraesCS1B01G036300 chr1D 93.642 173 9 2 1828 1998 39871983 39871811 1.930000e-64 257
27 TraesCS1B01G036300 chr3D 86.333 878 57 30 2999 3837 553398591 553397738 0.000000e+00 898
28 TraesCS1B01G036300 chr3D 83.371 878 88 35 3001 3838 507776343 507775484 0.000000e+00 760
29 TraesCS1B01G036300 chr3D 95.142 247 10 2 5156 5400 519301314 519301560 6.560000e-104 388
30 TraesCS1B01G036300 chr5B 83.710 884 84 36 2999 3837 51865367 51864499 0.000000e+00 780
31 TraesCS1B01G036300 chr5B 80.964 851 102 36 3003 3813 123024184 123023354 2.140000e-173 619
32 TraesCS1B01G036300 chr5B 79.650 914 104 35 3003 3843 281447525 281446621 2.800000e-162 582
33 TraesCS1B01G036300 chr5B 82.377 488 50 26 3383 3840 476786864 476787345 5.070000e-105 392
34 TraesCS1B01G036300 chr5B 83.427 356 34 7 3501 3837 51626475 51626126 1.890000e-79 307
35 TraesCS1B01G036300 chr6B 81.105 905 95 31 3000 3835 659813481 659812584 0.000000e+00 654
36 TraesCS1B01G036300 chr2B 81.406 882 87 48 2987 3814 616929179 616930037 0.000000e+00 649
37 TraesCS1B01G036300 chr2B 88.281 512 38 16 3003 3502 635201435 635200934 1.300000e-165 593
38 TraesCS1B01G036300 chr2B 92.105 228 16 2 3611 3837 635200843 635200617 2.430000e-83 320
39 TraesCS1B01G036300 chr7B 81.293 866 101 33 3009 3837 255998769 255997928 0.000000e+00 645
40 TraesCS1B01G036300 chr7B 86.032 630 52 26 2998 3609 70826285 70825674 1.270000e-180 643
41 TraesCS1B01G036300 chr7B 93.902 246 13 2 5157 5400 632179431 632179676 2.380000e-98 370
42 TraesCS1B01G036300 chr5A 81.308 856 107 32 2999 3813 504564248 504565091 0.000000e+00 645
43 TraesCS1B01G036300 chr4B 79.791 861 94 41 3000 3816 667421877 667421053 2.200000e-153 553
44 TraesCS1B01G036300 chr4B 94.239 243 12 2 5160 5400 385954111 385954353 2.380000e-98 370
45 TraesCS1B01G036300 chr2D 86.520 408 39 11 2999 3393 550209838 550210242 8.310000e-118 435
46 TraesCS1B01G036300 chr2D 86.241 407 42 10 2999 3393 549710942 549711346 3.860000e-116 429
47 TraesCS1B01G036300 chr5D 88.545 323 26 9 4358 4676 38453736 38454051 1.100000e-101 381
48 TraesCS1B01G036300 chr5D 91.005 189 13 4 1828 2013 12986011 12985824 8.980000e-63 252
49 TraesCS1B01G036300 chr3B 95.062 243 11 1 5159 5400 690854686 690854444 1.100000e-101 381
50 TraesCS1B01G036300 chr3B 90.452 199 12 5 1806 1998 68347362 68347165 6.940000e-64 255
51 TraesCS1B01G036300 chr3B 91.444 187 12 4 1817 2002 571752702 571752519 2.500000e-63 254
52 TraesCS1B01G036300 chr7D 94.355 248 12 2 5155 5400 219837021 219836774 3.950000e-101 379
53 TraesCS1B01G036300 chr7D 93.227 251 14 3 5152 5400 429473219 429472970 3.070000e-97 366
54 TraesCS1B01G036300 chr7D 92.857 182 11 2 1823 2002 192936011 192936192 4.150000e-66 263
55 TraesCS1B01G036300 chr6D 88.235 323 27 9 4358 4676 44114524 44114839 5.110000e-100 375
56 TraesCS1B01G036300 chr6D 92.147 191 12 3 1823 2010 218383972 218383782 3.210000e-67 267
57 TraesCS1B01G036300 chr6D 95.758 165 7 0 1831 1995 302057021 302057185 3.210000e-67 267
58 TraesCS1B01G036300 chr6D 89.899 198 14 6 1832 2028 82196660 82196852 3.230000e-62 250
59 TraesCS1B01G036300 chr3A 94.650 243 11 2 5160 5400 209408144 209407902 5.110000e-100 375
60 TraesCS1B01G036300 chr4A 94.286 245 13 1 5157 5400 588511429 588511673 1.840000e-99 374
61 TraesCS1B01G036300 chr7A 85.666 293 23 10 3565 3838 65087497 65087789 1.900000e-74 291
62 TraesCS1B01G036300 chr7A 92.029 138 9 1 3700 3837 194045921 194045786 5.520000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G036300 chr1B 17342494 17347893 5399 False 9973.000000 9973 100.000000 1 5400 1 chr1B.!!$F2 5399
1 TraesCS1B01G036300 chr1B 17014936 17016644 1708 True 1993.000000 1993 87.761000 1 1716 1 chr1B.!!$R1 1715
2 TraesCS1B01G036300 chr1B 16858644 16860240 1596 False 1973.000000 1973 89.014000 1 1596 1 chr1B.!!$F1 1595
3 TraesCS1B01G036300 chr1B 16892444 16896320 3876 False 1504.666667 1975 90.102667 1 4687 3 chr1B.!!$F5 4686
4 TraesCS1B01G036300 chr1B 16843753 16846329 2576 False 1019.000000 1397 90.829667 1994 5158 3 chr1B.!!$F4 3164
5 TraesCS1B01G036300 chr1B 16694084 16694929 845 False 491.000000 780 82.108000 2343 4414 2 chr1B.!!$F3 2071
6 TraesCS1B01G036300 chrUn 2470245 2471984 1739 True 3214.000000 3214 100.000000 1 1740 1 chrUn.!!$R1 1739
7 TraesCS1B01G036300 chrUn 345525279 345527018 1739 False 3214.000000 3214 100.000000 1 1740 1 chrUn.!!$F1 1739
8 TraesCS1B01G036300 chrUn 385678480 385680082 1602 True 2944.000000 2944 99.813000 1752 3354 1 chrUn.!!$R3 1602
9 TraesCS1B01G036300 chr1A 13455292 13456945 1653 False 2030.000000 2030 88.809000 3 1663 1 chr1A.!!$F3 1660
10 TraesCS1B01G036300 chr1A 13416243 13417954 1711 False 2013.000000 2013 87.914000 1 1716 1 chr1A.!!$F2 1715
11 TraesCS1B01G036300 chr1A 13571799 13575227 3428 False 1238.500000 2078 84.794500 1 4638 2 chr1A.!!$F6 4637
12 TraesCS1B01G036300 chr1A 505557316 505558158 842 False 649.000000 649 81.647000 3042 3837 1 chr1A.!!$F5 795
13 TraesCS1B01G036300 chr1A 13319431 13320010 579 False 560.000000 560 84.385000 4087 4677 1 chr1A.!!$F1 590
14 TraesCS1B01G036300 chr1D 11456222 11457823 1601 False 2063.000000 2063 89.900000 1 1604 1 chr1D.!!$F1 1603
15 TraesCS1B01G036300 chr1D 456130680 456131576 896 True 638.000000 638 80.837000 3000 3837 1 chr1D.!!$R2 837
16 TraesCS1B01G036300 chr3D 553397738 553398591 853 True 898.000000 898 86.333000 2999 3837 1 chr3D.!!$R2 838
17 TraesCS1B01G036300 chr3D 507775484 507776343 859 True 760.000000 760 83.371000 3001 3838 1 chr3D.!!$R1 837
18 TraesCS1B01G036300 chr5B 51864499 51865367 868 True 780.000000 780 83.710000 2999 3837 1 chr5B.!!$R2 838
19 TraesCS1B01G036300 chr5B 123023354 123024184 830 True 619.000000 619 80.964000 3003 3813 1 chr5B.!!$R3 810
20 TraesCS1B01G036300 chr5B 281446621 281447525 904 True 582.000000 582 79.650000 3003 3843 1 chr5B.!!$R4 840
21 TraesCS1B01G036300 chr6B 659812584 659813481 897 True 654.000000 654 81.105000 3000 3835 1 chr6B.!!$R1 835
22 TraesCS1B01G036300 chr2B 616929179 616930037 858 False 649.000000 649 81.406000 2987 3814 1 chr2B.!!$F1 827
23 TraesCS1B01G036300 chr2B 635200617 635201435 818 True 456.500000 593 90.193000 3003 3837 2 chr2B.!!$R1 834
24 TraesCS1B01G036300 chr7B 255997928 255998769 841 True 645.000000 645 81.293000 3009 3837 1 chr7B.!!$R2 828
25 TraesCS1B01G036300 chr7B 70825674 70826285 611 True 643.000000 643 86.032000 2998 3609 1 chr7B.!!$R1 611
26 TraesCS1B01G036300 chr5A 504564248 504565091 843 False 645.000000 645 81.308000 2999 3813 1 chr5A.!!$F1 814
27 TraesCS1B01G036300 chr4B 667421053 667421877 824 True 553.000000 553 79.791000 3000 3816 1 chr4B.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1754 5.126222 TGTCTGATAGTGATGAGGACAACTC 59.874 44.0 0.00 0.0 46.78 3.01 F
3516 4054 0.033920 TGAGCTTCGTGTGCTGACAT 59.966 50.0 4.55 0.0 41.30 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3609 4148 0.449786 TGTTGTGTGGTTGTGAAGCG 59.550 50.0 0.0 0.0 0.00 4.68 R
5298 6211 0.037046 CCGTTTACTAACTGGGCCGT 60.037 55.0 0.0 0.0 31.89 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1740 1754 5.126222 TGTCTGATAGTGATGAGGACAACTC 59.874 44.000 0.00 0.00 46.78 3.01
1750 1842 6.484977 GTGATGAGGACAACTCTCTTTCTTTT 59.515 38.462 0.00 0.00 46.72 2.27
3462 3982 3.262915 AGCTAGCAGTGAGGTGAGAAAAT 59.737 43.478 18.83 0.00 0.00 1.82
3475 4003 8.145767 TGAGGTGAGAAAATAAACTAAACGAGA 58.854 33.333 0.00 0.00 0.00 4.04
3516 4054 0.033920 TGAGCTTCGTGTGCTGACAT 59.966 50.000 4.55 0.00 41.30 3.06
3517 4055 1.272212 TGAGCTTCGTGTGCTGACATA 59.728 47.619 4.55 0.00 41.30 2.29
3518 4056 2.094026 TGAGCTTCGTGTGCTGACATAT 60.094 45.455 4.55 0.00 41.30 1.78
3519 4057 2.274437 AGCTTCGTGTGCTGACATATG 58.726 47.619 0.00 0.00 39.56 1.78
3528 4066 2.289820 GTGCTGACATATGCATGTGAGG 59.710 50.000 27.77 17.08 45.58 3.86
3580 4119 7.234355 ACATGAAATAAGAACTCCCAAGAAGT 58.766 34.615 0.00 0.00 0.00 3.01
3626 4184 0.449786 CACGCTTCACAACCACACAA 59.550 50.000 0.00 0.00 0.00 3.33
3634 4192 5.752955 GCTTCACAACCACACAACAAATAAT 59.247 36.000 0.00 0.00 0.00 1.28
3854 4444 6.599638 CCTCTAGTTTGGTCTATTTGGGAAAG 59.400 42.308 0.00 0.00 0.00 2.62
3858 4448 7.050970 AGTTTGGTCTATTTGGGAAAGAAAC 57.949 36.000 0.00 0.00 0.00 2.78
3859 4449 6.609616 AGTTTGGTCTATTTGGGAAAGAAACA 59.390 34.615 0.00 0.00 0.00 2.83
3861 4451 7.425224 TTGGTCTATTTGGGAAAGAAACAAA 57.575 32.000 0.00 0.00 38.33 2.83
3862 4452 7.049799 TGGTCTATTTGGGAAAGAAACAAAG 57.950 36.000 0.00 0.00 37.50 2.77
3863 4453 6.041523 TGGTCTATTTGGGAAAGAAACAAAGG 59.958 38.462 0.00 0.00 37.50 3.11
3864 4454 6.455647 GTCTATTTGGGAAAGAAACAAAGGG 58.544 40.000 0.00 0.00 37.50 3.95
3890 4480 6.327154 TGATGCATGCTTCAGAAGTATTTTG 58.673 36.000 27.21 3.83 31.04 2.44
3905 4495 0.413037 TTTTGCCCATGGATCCCAGT 59.587 50.000 15.22 0.00 36.75 4.00
3912 4502 2.654863 CCATGGATCCCAGTGGTTTAC 58.345 52.381 5.56 0.00 36.75 2.01
4031 4621 6.128795 GGCAATCTGAATCTTATACGTAGTGC 60.129 42.308 0.08 0.00 45.73 4.40
4041 4631 2.385013 TACGTAGTGCGGTACAGAGA 57.615 50.000 5.41 0.00 45.73 3.10
4042 4632 1.527034 ACGTAGTGCGGTACAGAGAA 58.473 50.000 5.41 0.00 46.52 2.87
4043 4633 1.881973 ACGTAGTGCGGTACAGAGAAA 59.118 47.619 5.41 0.00 46.52 2.52
4074 4664 6.480320 GTCTTTCTTGCTGTAGAAAAGAGTCA 59.520 38.462 9.43 0.00 42.01 3.41
4144 4734 3.428045 GGAATAATGTGCAGTGTGCCTTC 60.428 47.826 0.00 0.00 44.23 3.46
4190 4781 3.423539 TGGAGGGACTTTGTGATTGAG 57.576 47.619 0.00 0.00 41.55 3.02
4227 4819 5.751990 GGTAGTGTATCGACAGTTATTTGGG 59.248 44.000 0.00 0.00 39.95 4.12
4228 4820 5.416271 AGTGTATCGACAGTTATTTGGGT 57.584 39.130 0.00 0.00 35.60 4.51
4229 4821 5.416947 AGTGTATCGACAGTTATTTGGGTC 58.583 41.667 0.00 0.00 35.60 4.46
4278 4870 5.048083 TGCTTGCTTCGGAAATATTTTCACT 60.048 36.000 7.26 0.00 0.00 3.41
4279 4871 6.150307 TGCTTGCTTCGGAAATATTTTCACTA 59.850 34.615 7.26 0.00 0.00 2.74
4280 4872 7.148086 TGCTTGCTTCGGAAATATTTTCACTAT 60.148 33.333 7.26 0.00 0.00 2.12
4281 4873 8.342634 GCTTGCTTCGGAAATATTTTCACTATA 58.657 33.333 7.26 0.00 0.00 1.31
4531 5141 2.989422 ACGCTGGAAGTTAATTGTGC 57.011 45.000 0.00 0.00 35.30 4.57
4555 5165 5.118664 CGATGAGCTTCTTTTAAACGACAGA 59.881 40.000 0.00 0.00 0.00 3.41
4558 5168 5.006358 TGAGCTTCTTTTAAACGACAGACAC 59.994 40.000 0.00 0.00 0.00 3.67
4559 5169 5.116882 AGCTTCTTTTAAACGACAGACACT 58.883 37.500 0.00 0.00 0.00 3.55
4561 5171 5.677178 GCTTCTTTTAAACGACAGACACTTG 59.323 40.000 0.00 0.00 0.00 3.16
4562 5172 5.151632 TCTTTTAAACGACAGACACTTGC 57.848 39.130 0.00 0.00 0.00 4.01
4563 5173 4.632251 TCTTTTAAACGACAGACACTTGCA 59.368 37.500 0.00 0.00 0.00 4.08
4564 5174 4.530094 TTTAAACGACAGACACTTGCAG 57.470 40.909 0.00 0.00 0.00 4.41
4565 5175 2.024176 AAACGACAGACACTTGCAGT 57.976 45.000 0.00 0.00 0.00 4.40
4568 5178 2.470821 ACGACAGACACTTGCAGTAAC 58.529 47.619 0.00 0.00 0.00 2.50
4569 5179 2.159156 ACGACAGACACTTGCAGTAACA 60.159 45.455 0.00 0.00 0.00 2.41
4570 5180 2.218759 CGACAGACACTTGCAGTAACAC 59.781 50.000 0.00 0.00 0.00 3.32
4678 5289 1.130955 GCCATCGTTGTTGCTTTGTG 58.869 50.000 0.00 0.00 0.00 3.33
4681 5292 3.186119 CCATCGTTGTTGCTTTGTGTTT 58.814 40.909 0.00 0.00 0.00 2.83
4698 5309 3.057315 GTGTTTGCATGCTGGTGTTCTAT 60.057 43.478 20.33 0.00 0.00 1.98
4705 5316 7.637631 TGCATGCTGGTGTTCTATTTATTTA 57.362 32.000 20.33 0.00 0.00 1.40
4706 5317 8.236585 TGCATGCTGGTGTTCTATTTATTTAT 57.763 30.769 20.33 0.00 0.00 1.40
4707 5318 8.694540 TGCATGCTGGTGTTCTATTTATTTATT 58.305 29.630 20.33 0.00 0.00 1.40
4708 5319 9.185192 GCATGCTGGTGTTCTATTTATTTATTC 57.815 33.333 11.37 0.00 0.00 1.75
4860 5773 9.487790 CCAAATGAAGCCTAAATTCTACAAAAA 57.512 29.630 0.00 0.00 0.00 1.94
5158 6071 5.897377 TTCCTTTTTGTATAGGCTTGAGC 57.103 39.130 0.00 0.00 41.14 4.26
5159 6072 4.917385 TCCTTTTTGTATAGGCTTGAGCA 58.083 39.130 5.24 0.00 44.36 4.26
5160 6073 5.509498 TCCTTTTTGTATAGGCTTGAGCAT 58.491 37.500 5.24 0.00 44.36 3.79
5161 6074 6.658849 TCCTTTTTGTATAGGCTTGAGCATA 58.341 36.000 5.24 2.33 44.36 3.14
5162 6075 6.542370 TCCTTTTTGTATAGGCTTGAGCATAC 59.458 38.462 5.24 6.03 40.26 2.39
5163 6076 6.238759 CCTTTTTGTATAGGCTTGAGCATACC 60.239 42.308 5.24 0.00 40.26 2.73
5164 6077 5.630415 TTTGTATAGGCTTGAGCATACCT 57.370 39.130 5.24 0.00 40.26 3.08
5165 6078 4.607293 TGTATAGGCTTGAGCATACCTG 57.393 45.455 5.24 0.00 40.26 4.00
5166 6079 3.324846 TGTATAGGCTTGAGCATACCTGG 59.675 47.826 5.24 0.00 40.26 4.45
5167 6080 0.469917 TAGGCTTGAGCATACCTGGC 59.530 55.000 5.24 0.00 44.36 4.85
5168 6081 1.825622 GGCTTGAGCATACCTGGCC 60.826 63.158 5.24 0.00 44.36 5.36
5169 6082 1.077501 GCTTGAGCATACCTGGCCA 60.078 57.895 4.71 4.71 41.59 5.36
5170 6083 0.680921 GCTTGAGCATACCTGGCCAA 60.681 55.000 7.01 0.00 41.59 4.52
5171 6084 1.838112 CTTGAGCATACCTGGCCAAA 58.162 50.000 7.01 0.00 0.00 3.28
5172 6085 1.474077 CTTGAGCATACCTGGCCAAAC 59.526 52.381 7.01 0.00 0.00 2.93
5173 6086 0.676466 TGAGCATACCTGGCCAAACG 60.676 55.000 7.01 0.00 0.00 3.60
5174 6087 1.376609 GAGCATACCTGGCCAAACGG 61.377 60.000 7.01 7.56 0.00 4.44
5175 6088 2.414785 GCATACCTGGCCAAACGGG 61.415 63.158 7.01 7.12 42.81 5.28
5210 6123 4.265056 GGCCCGGCCCGTCATAAT 62.265 66.667 18.83 0.00 44.06 1.28
5211 6124 2.668550 GCCCGGCCCGTCATAATC 60.669 66.667 0.85 0.00 0.00 1.75
5212 6125 2.357034 CCCGGCCCGTCATAATCG 60.357 66.667 0.85 0.00 0.00 3.34
5213 6126 2.420043 CCGGCCCGTCATAATCGT 59.580 61.111 0.85 0.00 0.00 3.73
5214 6127 1.954146 CCGGCCCGTCATAATCGTG 60.954 63.158 0.85 0.00 0.00 4.35
5215 6128 2.594962 CGGCCCGTCATAATCGTGC 61.595 63.158 0.00 0.00 0.00 5.34
5216 6129 2.251642 GGCCCGTCATAATCGTGCC 61.252 63.158 0.00 0.00 43.26 5.01
5217 6130 1.227556 GCCCGTCATAATCGTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
5218 6131 1.498865 GCCCGTCATAATCGTGCCTG 61.499 60.000 0.00 0.00 0.00 4.85
5219 6132 0.880278 CCCGTCATAATCGTGCCTGG 60.880 60.000 0.00 0.00 0.00 4.45
5220 6133 1.498865 CCGTCATAATCGTGCCTGGC 61.499 60.000 12.87 12.87 0.00 4.85
5221 6134 1.498865 CGTCATAATCGTGCCTGGCC 61.499 60.000 17.53 6.66 0.00 5.36
5222 6135 1.148273 TCATAATCGTGCCTGGCCC 59.852 57.895 17.53 2.94 0.00 5.80
5223 6136 2.111043 ATAATCGTGCCTGGCCCG 59.889 61.111 17.67 17.67 0.00 6.13
5224 6137 3.476031 ATAATCGTGCCTGGCCCGG 62.476 63.158 22.84 9.24 0.00 5.73
5248 6161 3.749981 CCGCCAGGGCATGATTAC 58.250 61.111 11.42 0.00 42.06 1.89
5249 6162 1.149174 CCGCCAGGGCATGATTACT 59.851 57.895 11.42 0.00 42.06 2.24
5250 6163 0.396435 CCGCCAGGGCATGATTACTA 59.604 55.000 11.42 0.00 42.06 1.82
5251 6164 1.003580 CCGCCAGGGCATGATTACTAT 59.996 52.381 11.42 0.00 42.06 2.12
5252 6165 2.236146 CCGCCAGGGCATGATTACTATA 59.764 50.000 11.42 0.00 42.06 1.31
5253 6166 3.262420 CGCCAGGGCATGATTACTATAC 58.738 50.000 11.42 0.00 42.06 1.47
5254 6167 3.262420 GCCAGGGCATGATTACTATACG 58.738 50.000 5.20 0.00 41.49 3.06
5255 6168 3.861840 CCAGGGCATGATTACTATACGG 58.138 50.000 0.00 0.00 0.00 4.02
5256 6169 3.369471 CCAGGGCATGATTACTATACGGG 60.369 52.174 0.00 0.00 0.00 5.28
5257 6170 2.236395 AGGGCATGATTACTATACGGGC 59.764 50.000 0.00 0.00 0.00 6.13
5258 6171 2.629051 GGCATGATTACTATACGGGCC 58.371 52.381 0.00 0.00 0.00 5.80
5259 6172 2.268298 GCATGATTACTATACGGGCCG 58.732 52.381 27.06 27.06 0.00 6.13
5260 6173 2.353406 GCATGATTACTATACGGGCCGT 60.353 50.000 35.91 35.91 44.35 5.68
5261 6174 3.250744 CATGATTACTATACGGGCCGTG 58.749 50.000 39.80 26.05 41.39 4.94
5262 6175 1.000060 TGATTACTATACGGGCCGTGC 60.000 52.381 39.80 18.18 41.39 5.34
5312 6225 2.983791 GGCACGGCCCAGTTAGTA 59.016 61.111 0.00 0.00 44.06 1.82
5313 6226 1.297364 GGCACGGCCCAGTTAGTAA 59.703 57.895 0.00 0.00 44.06 2.24
5314 6227 0.321830 GGCACGGCCCAGTTAGTAAA 60.322 55.000 0.00 0.00 44.06 2.01
5315 6228 0.800631 GCACGGCCCAGTTAGTAAAC 59.199 55.000 0.00 0.00 35.72 2.01
5316 6229 1.073177 CACGGCCCAGTTAGTAAACG 58.927 55.000 0.00 0.00 40.73 3.60
5317 6230 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.000 0.00 0.00 40.73 4.44
5318 6231 0.741927 CGGCCCAGTTAGTAAACGGG 60.742 60.000 11.93 11.93 46.88 5.28
5321 6234 1.734163 CCCAGTTAGTAAACGGGCTG 58.266 55.000 5.20 0.00 46.22 4.85
5322 6235 1.677820 CCCAGTTAGTAAACGGGCTGG 60.678 57.143 8.78 8.78 46.22 4.85
5323 6236 1.084289 CAGTTAGTAAACGGGCTGGC 58.916 55.000 0.00 0.00 40.73 4.85
5324 6237 0.688487 AGTTAGTAAACGGGCTGGCA 59.312 50.000 2.88 0.00 40.73 4.92
5325 6238 0.800631 GTTAGTAAACGGGCTGGCAC 59.199 55.000 2.88 0.00 0.00 5.01
5336 6249 2.590575 CTGGCACGTTGACCCGTT 60.591 61.111 0.00 0.00 39.45 4.44
5337 6250 2.124653 TGGCACGTTGACCCGTTT 60.125 55.556 0.00 0.00 39.45 3.60
5338 6251 0.881159 CTGGCACGTTGACCCGTTTA 60.881 55.000 0.00 0.00 39.45 2.01
5339 6252 0.881159 TGGCACGTTGACCCGTTTAG 60.881 55.000 0.00 0.00 39.45 1.85
5340 6253 1.205820 GCACGTTGACCCGTTTAGC 59.794 57.895 0.00 0.00 39.45 3.09
5341 6254 1.500512 GCACGTTGACCCGTTTAGCA 61.501 55.000 0.00 0.00 39.45 3.49
5342 6255 1.153353 CACGTTGACCCGTTTAGCAT 58.847 50.000 0.00 0.00 39.45 3.79
5343 6256 1.136085 CACGTTGACCCGTTTAGCATG 60.136 52.381 0.00 0.00 39.45 4.06
5344 6257 0.446222 CGTTGACCCGTTTAGCATGG 59.554 55.000 0.00 0.00 0.00 3.66
5345 6258 1.530323 GTTGACCCGTTTAGCATGGT 58.470 50.000 1.62 1.62 0.00 3.55
5346 6259 1.199097 GTTGACCCGTTTAGCATGGTG 59.801 52.381 7.89 0.00 0.00 4.17
5347 6260 0.322098 TGACCCGTTTAGCATGGTGG 60.322 55.000 7.89 1.85 0.00 4.61
5348 6261 1.001393 ACCCGTTTAGCATGGTGGG 60.001 57.895 14.76 14.76 42.50 4.61
5349 6262 2.414785 CCCGTTTAGCATGGTGGGC 61.415 63.158 7.89 0.00 0.00 5.36
5350 6263 2.414785 CCGTTTAGCATGGTGGGCC 61.415 63.158 7.89 0.00 0.00 5.80
5351 6264 2.760159 CGTTTAGCATGGTGGGCCG 61.760 63.158 7.89 0.80 37.67 6.13
5352 6265 2.753849 TTTAGCATGGTGGGCCGC 60.754 61.111 9.05 9.05 37.67 6.53
5353 6266 3.575703 TTTAGCATGGTGGGCCGCA 62.576 57.895 20.39 5.52 37.67 5.69
5354 6267 2.852563 TTTAGCATGGTGGGCCGCAT 62.853 55.000 20.39 7.78 37.67 4.73
5355 6268 1.988982 TTAGCATGGTGGGCCGCATA 61.989 55.000 20.39 7.63 37.67 3.14
5356 6269 1.778017 TAGCATGGTGGGCCGCATAT 61.778 55.000 20.39 9.81 37.67 1.78
5357 6270 2.202395 GCATGGTGGGCCGCATATT 61.202 57.895 20.39 0.00 37.67 1.28
5358 6271 1.747325 GCATGGTGGGCCGCATATTT 61.747 55.000 20.39 0.00 37.67 1.40
5359 6272 0.752054 CATGGTGGGCCGCATATTTT 59.248 50.000 20.39 0.00 37.67 1.82
5360 6273 1.138661 CATGGTGGGCCGCATATTTTT 59.861 47.619 20.39 0.00 37.67 1.94
5361 6274 2.145397 TGGTGGGCCGCATATTTTTA 57.855 45.000 20.39 0.00 37.67 1.52
5362 6275 2.028130 TGGTGGGCCGCATATTTTTAG 58.972 47.619 20.39 0.00 37.67 1.85
5363 6276 1.269569 GGTGGGCCGCATATTTTTAGC 60.270 52.381 20.39 0.00 0.00 3.09
5364 6277 1.036707 TGGGCCGCATATTTTTAGCC 58.963 50.000 0.00 0.00 39.73 3.93
5365 6278 1.328279 GGGCCGCATATTTTTAGCCT 58.672 50.000 0.00 0.00 40.32 4.58
5366 6279 1.000274 GGGCCGCATATTTTTAGCCTG 60.000 52.381 0.00 0.00 40.32 4.85
5367 6280 1.681264 GGCCGCATATTTTTAGCCTGT 59.319 47.619 0.00 0.00 37.42 4.00
5368 6281 2.100749 GGCCGCATATTTTTAGCCTGTT 59.899 45.455 0.00 0.00 37.42 3.16
5369 6282 3.316868 GGCCGCATATTTTTAGCCTGTTA 59.683 43.478 0.00 0.00 37.42 2.41
5370 6283 4.022329 GGCCGCATATTTTTAGCCTGTTAT 60.022 41.667 0.00 0.00 37.42 1.89
5371 6284 5.508994 GGCCGCATATTTTTAGCCTGTTATT 60.509 40.000 0.00 0.00 37.42 1.40
5372 6285 5.983118 GCCGCATATTTTTAGCCTGTTATTT 59.017 36.000 0.00 0.00 0.00 1.40
5373 6286 6.074356 GCCGCATATTTTTAGCCTGTTATTTG 60.074 38.462 0.00 0.00 0.00 2.32
5374 6287 7.199766 CCGCATATTTTTAGCCTGTTATTTGA 58.800 34.615 0.00 0.00 0.00 2.69
5375 6288 7.167468 CCGCATATTTTTAGCCTGTTATTTGAC 59.833 37.037 0.00 0.00 0.00 3.18
5376 6289 7.097047 CGCATATTTTTAGCCTGTTATTTGACG 60.097 37.037 0.00 0.00 0.00 4.35
5377 6290 7.305993 GCATATTTTTAGCCTGTTATTTGACGC 60.306 37.037 0.00 0.00 0.00 5.19
5378 6291 5.440234 TTTTTAGCCTGTTATTTGACGCA 57.560 34.783 0.00 0.00 0.00 5.24
5379 6292 4.413495 TTTAGCCTGTTATTTGACGCAC 57.587 40.909 0.00 0.00 0.00 5.34
5380 6293 2.185004 AGCCTGTTATTTGACGCACT 57.815 45.000 0.00 0.00 0.00 4.40
5381 6294 1.806542 AGCCTGTTATTTGACGCACTG 59.193 47.619 0.00 0.00 0.00 3.66
5382 6295 1.804151 GCCTGTTATTTGACGCACTGA 59.196 47.619 0.00 0.00 0.00 3.41
5383 6296 2.159653 GCCTGTTATTTGACGCACTGAG 60.160 50.000 0.00 0.00 0.00 3.35
5384 6297 2.159653 CCTGTTATTTGACGCACTGAGC 60.160 50.000 0.00 0.00 40.87 4.26
5394 6307 3.384702 GCACTGAGCGTTTTTAGCC 57.615 52.632 0.00 0.00 34.64 3.93
5395 6308 0.875059 GCACTGAGCGTTTTTAGCCT 59.125 50.000 0.00 0.00 34.64 4.58
5396 6309 2.073816 GCACTGAGCGTTTTTAGCCTA 58.926 47.619 0.00 0.00 34.64 3.93
5397 6310 2.678336 GCACTGAGCGTTTTTAGCCTAT 59.322 45.455 0.00 0.00 34.64 2.57
5398 6311 3.127030 GCACTGAGCGTTTTTAGCCTATT 59.873 43.478 0.00 0.00 34.64 1.73
5399 6312 4.379499 GCACTGAGCGTTTTTAGCCTATTT 60.379 41.667 0.00 0.00 34.64 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1750 1842 4.138290 CAAGCGGAACTCTAGAGATAGGA 58.862 47.826 26.57 0.00 0.00 2.94
3462 3982 5.924825 GTGCTCCTCTTTCTCGTTTAGTTTA 59.075 40.000 0.00 0.00 0.00 2.01
3475 4003 1.768684 TTGGCTCCGTGCTCCTCTTT 61.769 55.000 0.00 0.00 42.39 2.52
3528 4066 4.466015 ACCCATGGAATTGTTATTGTGACC 59.534 41.667 15.22 0.00 0.00 4.02
3580 4119 1.323412 CCCGGTGGTGATTGTTTGAA 58.677 50.000 0.00 0.00 0.00 2.69
3609 4148 0.449786 TGTTGTGTGGTTGTGAAGCG 59.550 50.000 0.00 0.00 0.00 4.68
3626 4184 9.799106 TTTCAAGAGAAGAGAGGAATTATTTGT 57.201 29.630 0.00 0.00 34.71 2.83
3655 4213 6.307776 TGTTGGGTTGATGTTGGAGTATTAA 58.692 36.000 0.00 0.00 0.00 1.40
3723 4295 5.988561 TGTTTTGATTTTATCTGTGTTGGCC 59.011 36.000 0.00 0.00 0.00 5.36
3854 4444 3.118884 AGCATGCATCATCCCTTTGTTTC 60.119 43.478 21.98 0.00 0.00 2.78
3858 4448 2.429250 TGAAGCATGCATCATCCCTTTG 59.571 45.455 20.99 0.00 0.00 2.77
3859 4449 2.693591 CTGAAGCATGCATCATCCCTTT 59.306 45.455 24.46 4.38 0.00 3.11
3861 4451 1.493446 TCTGAAGCATGCATCATCCCT 59.507 47.619 24.46 0.00 0.00 4.20
3862 4452 1.977056 TCTGAAGCATGCATCATCCC 58.023 50.000 24.46 0.00 0.00 3.85
3863 4453 2.950309 ACTTCTGAAGCATGCATCATCC 59.050 45.455 24.46 5.24 0.00 3.51
3864 4454 5.943706 ATACTTCTGAAGCATGCATCATC 57.056 39.130 24.46 14.49 0.00 2.92
3890 4480 2.196776 CCACTGGGATCCATGGGC 59.803 66.667 15.23 4.31 35.59 5.36
4024 4614 2.624316 TTTCTCTGTACCGCACTACG 57.376 50.000 0.00 0.00 43.15 3.51
4042 4632 9.651913 TTTTCTACAGCAAGAAAGACAATTTTT 57.348 25.926 8.36 0.00 44.15 1.94
4043 4633 9.305925 CTTTTCTACAGCAAGAAAGACAATTTT 57.694 29.630 8.36 0.00 44.15 1.82
4074 4664 9.846248 GACAATTAAAAGAAGATATTGTGCACT 57.154 29.630 19.41 0.28 38.97 4.40
4190 4781 6.978659 TCGATACACTACCAGAAATTCATCAC 59.021 38.462 0.00 0.00 0.00 3.06
4279 4871 9.373450 CTAACTACATAGCTGGGATCCATATAT 57.627 37.037 15.23 3.26 30.82 0.86
4280 4872 8.344546 ACTAACTACATAGCTGGGATCCATATA 58.655 37.037 15.23 0.77 30.82 0.86
4281 4873 7.192628 ACTAACTACATAGCTGGGATCCATAT 58.807 38.462 15.23 3.27 30.82 1.78
4320 4922 6.993079 TCTCTGTTAGCTAGACAAAACATCA 58.007 36.000 0.00 0.00 31.88 3.07
4468 5077 4.792702 TCAATTCTTTGCATAAATCGTGCG 59.207 37.500 0.00 0.00 45.37 5.34
4531 5141 5.118664 TCTGTCGTTTAAAAGAAGCTCATCG 59.881 40.000 5.37 0.00 0.00 3.84
4555 5165 4.199310 ACAATCTGTGTTACTGCAAGTGT 58.801 39.130 0.00 0.00 42.36 3.55
4568 5178 7.543868 TCTGTTACAAAAACCAAACAATCTGTG 59.456 33.333 0.00 0.00 31.90 3.66
4569 5179 7.544217 GTCTGTTACAAAAACCAAACAATCTGT 59.456 33.333 0.00 0.00 31.90 3.41
4570 5180 7.759433 AGTCTGTTACAAAAACCAAACAATCTG 59.241 33.333 0.00 0.00 31.90 2.90
4678 5289 3.855689 ATAGAACACCAGCATGCAAAC 57.144 42.857 21.98 3.85 31.97 2.93
4681 5292 6.528537 AAATAAATAGAACACCAGCATGCA 57.471 33.333 21.98 0.00 31.97 3.96
4705 5316 6.015010 TGTCCGGTCCAACAAAATAAATGAAT 60.015 34.615 0.00 0.00 0.00 2.57
4706 5317 5.302059 TGTCCGGTCCAACAAAATAAATGAA 59.698 36.000 0.00 0.00 0.00 2.57
4707 5318 4.827835 TGTCCGGTCCAACAAAATAAATGA 59.172 37.500 0.00 0.00 0.00 2.57
4708 5319 5.127693 TGTCCGGTCCAACAAAATAAATG 57.872 39.130 0.00 0.00 0.00 2.32
4722 5333 0.531311 AACGTCAGGTTTGTCCGGTC 60.531 55.000 0.00 0.00 41.99 4.79
5001 5914 5.405935 AGGACAAAGCAACAAAAGAACTT 57.594 34.783 0.00 0.00 0.00 2.66
5158 6071 3.918544 CCCGTTTGGCCAGGTATG 58.081 61.111 5.11 0.95 0.00 2.39
5194 6107 2.668550 GATTATGACGGGCCGGGC 60.669 66.667 31.78 22.00 0.00 6.13
5195 6108 2.357034 CGATTATGACGGGCCGGG 60.357 66.667 31.78 3.37 0.00 5.73
5196 6109 1.954146 CACGATTATGACGGGCCGG 60.954 63.158 31.78 12.10 34.93 6.13
5197 6110 3.625232 CACGATTATGACGGGCCG 58.375 61.111 27.06 27.06 34.93 6.13
5200 6113 0.880278 CCAGGCACGATTATGACGGG 60.880 60.000 0.00 0.00 36.56 5.28
5201 6114 1.498865 GCCAGGCACGATTATGACGG 61.499 60.000 6.55 0.00 30.43 4.79
5202 6115 1.498865 GGCCAGGCACGATTATGACG 61.499 60.000 15.19 0.00 30.43 4.35
5203 6116 1.166531 GGGCCAGGCACGATTATGAC 61.167 60.000 15.19 0.00 0.00 3.06
5204 6117 1.148273 GGGCCAGGCACGATTATGA 59.852 57.895 15.19 0.00 0.00 2.15
5205 6118 3.749981 GGGCCAGGCACGATTATG 58.250 61.111 15.19 0.00 0.00 1.90
5231 6144 0.396435 TAGTAATCATGCCCTGGCGG 59.604 55.000 3.32 0.00 45.51 6.13
5232 6145 2.479566 ATAGTAATCATGCCCTGGCG 57.520 50.000 3.32 0.00 45.51 5.69
5233 6146 3.262420 CGTATAGTAATCATGCCCTGGC 58.738 50.000 0.00 0.00 42.35 4.85
5234 6147 3.369471 CCCGTATAGTAATCATGCCCTGG 60.369 52.174 0.00 0.00 0.00 4.45
5235 6148 3.861840 CCCGTATAGTAATCATGCCCTG 58.138 50.000 0.00 0.00 0.00 4.45
5236 6149 2.236395 GCCCGTATAGTAATCATGCCCT 59.764 50.000 0.00 0.00 0.00 5.19
5237 6150 2.629051 GCCCGTATAGTAATCATGCCC 58.371 52.381 0.00 0.00 0.00 5.36
5238 6151 2.629051 GGCCCGTATAGTAATCATGCC 58.371 52.381 0.00 0.00 0.00 4.40
5239 6152 2.268298 CGGCCCGTATAGTAATCATGC 58.732 52.381 0.00 0.00 0.00 4.06
5240 6153 3.250744 CACGGCCCGTATAGTAATCATG 58.749 50.000 9.25 0.00 38.32 3.07
5241 6154 2.353406 GCACGGCCCGTATAGTAATCAT 60.353 50.000 9.25 0.00 38.32 2.45
5242 6155 1.000060 GCACGGCCCGTATAGTAATCA 60.000 52.381 9.25 0.00 38.32 2.57
5243 6156 1.670967 GGCACGGCCCGTATAGTAATC 60.671 57.143 9.25 0.00 44.06 1.75
5244 6157 0.319405 GGCACGGCCCGTATAGTAAT 59.681 55.000 9.25 0.00 44.06 1.89
5245 6158 1.741525 GGCACGGCCCGTATAGTAA 59.258 57.895 9.25 0.00 44.06 2.24
5246 6159 3.447040 GGCACGGCCCGTATAGTA 58.553 61.111 9.25 0.00 44.06 1.82
5296 6209 0.800631 GTTTACTAACTGGGCCGTGC 59.199 55.000 0.00 0.00 0.00 5.34
5297 6210 1.073177 CGTTTACTAACTGGGCCGTG 58.927 55.000 0.00 0.00 31.89 4.94
5298 6211 0.037046 CCGTTTACTAACTGGGCCGT 60.037 55.000 0.00 0.00 31.89 5.68
5299 6212 0.741927 CCCGTTTACTAACTGGGCCG 60.742 60.000 0.00 0.00 39.48 6.13
5300 6213 3.164026 CCCGTTTACTAACTGGGCC 57.836 57.895 0.00 0.00 39.48 5.80
5302 6215 1.677820 CCAGCCCGTTTACTAACTGGG 60.678 57.143 11.19 11.19 44.21 4.45
5303 6216 1.734163 CCAGCCCGTTTACTAACTGG 58.266 55.000 0.00 0.00 40.48 4.00
5304 6217 1.084289 GCCAGCCCGTTTACTAACTG 58.916 55.000 0.00 0.00 31.89 3.16
5305 6218 0.688487 TGCCAGCCCGTTTACTAACT 59.312 50.000 0.00 0.00 31.89 2.24
5306 6219 0.800631 GTGCCAGCCCGTTTACTAAC 59.199 55.000 0.00 0.00 0.00 2.34
5307 6220 0.671163 CGTGCCAGCCCGTTTACTAA 60.671 55.000 0.00 0.00 0.00 2.24
5308 6221 1.079681 CGTGCCAGCCCGTTTACTA 60.080 57.895 0.00 0.00 0.00 1.82
5309 6222 2.358247 CGTGCCAGCCCGTTTACT 60.358 61.111 0.00 0.00 0.00 2.24
5310 6223 2.255881 AACGTGCCAGCCCGTTTAC 61.256 57.895 7.07 0.00 44.16 2.01
5311 6224 2.111460 AACGTGCCAGCCCGTTTA 59.889 55.556 7.07 0.00 44.16 2.01
5312 6225 3.591835 CAACGTGCCAGCCCGTTT 61.592 61.111 10.16 0.00 44.16 3.60
5325 6238 0.446222 CCATGCTAAACGGGTCAACG 59.554 55.000 0.00 0.00 40.31 4.10
5326 6239 1.199097 CACCATGCTAAACGGGTCAAC 59.801 52.381 0.00 0.00 0.00 3.18
5327 6240 1.529226 CACCATGCTAAACGGGTCAA 58.471 50.000 0.00 0.00 0.00 3.18
5328 6241 0.322098 CCACCATGCTAAACGGGTCA 60.322 55.000 0.00 0.00 0.00 4.02
5329 6242 1.029947 CCCACCATGCTAAACGGGTC 61.030 60.000 0.00 0.00 0.00 4.46
5330 6243 1.001393 CCCACCATGCTAAACGGGT 60.001 57.895 0.00 0.00 0.00 5.28
5331 6244 2.414785 GCCCACCATGCTAAACGGG 61.415 63.158 0.00 0.00 36.71 5.28
5332 6245 2.414785 GGCCCACCATGCTAAACGG 61.415 63.158 0.00 0.00 35.26 4.44
5333 6246 2.760159 CGGCCCACCATGCTAAACG 61.760 63.158 0.00 0.00 34.57 3.60
5334 6247 3.063743 GCGGCCCACCATGCTAAAC 62.064 63.158 0.00 0.00 34.57 2.01
5335 6248 2.753849 GCGGCCCACCATGCTAAA 60.754 61.111 0.00 0.00 34.57 1.85
5336 6249 1.988982 TATGCGGCCCACCATGCTAA 61.989 55.000 0.00 0.00 34.57 3.09
5337 6250 1.778017 ATATGCGGCCCACCATGCTA 61.778 55.000 0.00 0.00 34.57 3.49
5338 6251 2.645394 AATATGCGGCCCACCATGCT 62.645 55.000 0.00 0.00 34.57 3.79
5339 6252 1.747325 AAATATGCGGCCCACCATGC 61.747 55.000 0.00 0.00 34.57 4.06
5340 6253 0.752054 AAAATATGCGGCCCACCATG 59.248 50.000 0.00 0.00 34.57 3.66
5341 6254 1.494960 AAAAATATGCGGCCCACCAT 58.505 45.000 0.00 0.00 34.57 3.55
5342 6255 2.028130 CTAAAAATATGCGGCCCACCA 58.972 47.619 0.00 0.00 34.57 4.17
5343 6256 1.269569 GCTAAAAATATGCGGCCCACC 60.270 52.381 0.00 0.00 0.00 4.61
5344 6257 1.269569 GGCTAAAAATATGCGGCCCAC 60.270 52.381 0.00 0.00 34.19 4.61
5345 6258 1.036707 GGCTAAAAATATGCGGCCCA 58.963 50.000 0.00 0.00 34.19 5.36
5346 6259 1.000274 CAGGCTAAAAATATGCGGCCC 60.000 52.381 0.00 0.00 40.32 5.80
5347 6260 1.681264 ACAGGCTAAAAATATGCGGCC 59.319 47.619 0.00 0.00 39.82 6.13
5348 6261 3.436700 AACAGGCTAAAAATATGCGGC 57.563 42.857 0.00 0.00 0.00 6.53
5349 6262 7.167468 GTCAAATAACAGGCTAAAAATATGCGG 59.833 37.037 0.00 0.00 0.00 5.69
5350 6263 7.097047 CGTCAAATAACAGGCTAAAAATATGCG 60.097 37.037 0.00 0.00 0.00 4.73
5351 6264 7.305993 GCGTCAAATAACAGGCTAAAAATATGC 60.306 37.037 0.00 0.00 0.00 3.14
5352 6265 7.700234 TGCGTCAAATAACAGGCTAAAAATATG 59.300 33.333 0.00 0.00 0.00 1.78
5353 6266 7.700656 GTGCGTCAAATAACAGGCTAAAAATAT 59.299 33.333 0.00 0.00 0.00 1.28
5354 6267 7.024768 GTGCGTCAAATAACAGGCTAAAAATA 58.975 34.615 0.00 0.00 0.00 1.40
5355 6268 5.861787 GTGCGTCAAATAACAGGCTAAAAAT 59.138 36.000 0.00 0.00 0.00 1.82
5356 6269 5.009210 AGTGCGTCAAATAACAGGCTAAAAA 59.991 36.000 0.00 0.00 0.00 1.94
5357 6270 4.517453 AGTGCGTCAAATAACAGGCTAAAA 59.483 37.500 0.00 0.00 0.00 1.52
5358 6271 4.069304 AGTGCGTCAAATAACAGGCTAAA 58.931 39.130 0.00 0.00 0.00 1.85
5359 6272 3.435327 CAGTGCGTCAAATAACAGGCTAA 59.565 43.478 0.00 0.00 0.00 3.09
5360 6273 3.000041 CAGTGCGTCAAATAACAGGCTA 59.000 45.455 0.00 0.00 0.00 3.93
5361 6274 1.806542 CAGTGCGTCAAATAACAGGCT 59.193 47.619 0.00 0.00 0.00 4.58
5362 6275 1.804151 TCAGTGCGTCAAATAACAGGC 59.196 47.619 0.00 0.00 0.00 4.85
5363 6276 2.159653 GCTCAGTGCGTCAAATAACAGG 60.160 50.000 0.00 0.00 0.00 4.00
5364 6277 3.109230 GCTCAGTGCGTCAAATAACAG 57.891 47.619 0.00 0.00 0.00 3.16
5376 6289 0.875059 AGGCTAAAAACGCTCAGTGC 59.125 50.000 0.00 0.00 38.57 4.40
5377 6290 4.946784 AATAGGCTAAAAACGCTCAGTG 57.053 40.909 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.