Multiple sequence alignment - TraesCS1B01G034100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G034100 chr1B 100.000 2685 0 0 1 2685 16477350 16480034 0.000000e+00 4959.0
1 TraesCS1B01G034100 chr1B 93.590 1560 85 14 444 1993 16692507 16694061 0.000000e+00 2313.0
2 TraesCS1B01G034100 chr1B 92.340 1436 84 11 1220 2649 16645423 16646838 0.000000e+00 2019.0
3 TraesCS1B01G034100 chr1B 94.059 202 12 0 55 256 16466525 16466726 9.340000e-80 307.0
4 TraesCS1B01G034100 chr1B 90.000 80 8 0 1 80 28055637 28055558 1.310000e-18 104.0
5 TraesCS1B01G034100 chr1A 91.485 2290 165 21 409 2685 22634729 22632457 0.000000e+00 3121.0
6 TraesCS1B01G034100 chr1A 91.722 1063 80 8 914 1972 12698839 12697781 0.000000e+00 1469.0
7 TraesCS1B01G034100 chr1A 91.471 340 17 6 2055 2393 12688957 12688629 8.760000e-125 457.0
8 TraesCS1B01G034100 chr1A 93.617 141 5 2 2383 2523 12686710 12686574 9.740000e-50 207.0
9 TraesCS1B01G034100 chr1D 91.050 2324 157 33 382 2685 11123100 11125392 0.000000e+00 3092.0
10 TraesCS1B01G034100 chr1D 87.285 755 77 12 382 1122 11040410 11041159 0.000000e+00 845.0
11 TraesCS1B01G034100 chr1D 89.844 640 25 9 2046 2685 11041514 11042113 0.000000e+00 785.0
12 TraesCS1B01G034100 chr1D 89.392 641 27 9 2046 2685 11090228 11090828 0.000000e+00 769.0
13 TraesCS1B01G034100 chr1D 86.467 702 67 18 432 1122 11089186 11089870 0.000000e+00 745.0
14 TraesCS1B01G034100 chr1D 78.231 294 39 11 799 1069 11197338 11197629 5.950000e-37 165.0
15 TraesCS1B01G034100 chr1D 96.774 31 1 0 1134 1164 11175637 11175607 5.000000e-03 52.8
16 TraesCS1B01G034100 chr7D 96.094 256 9 1 1 256 637756037 637756291 1.490000e-112 416.0
17 TraesCS1B01G034100 chr7D 94.118 204 12 0 53 256 637749538 637749741 7.220000e-81 311.0
18 TraesCS1B01G034100 chr7D 82.264 265 24 6 1 258 631883611 631883363 9.740000e-50 207.0
19 TraesCS1B01G034100 chr7D 96.970 66 2 0 1 66 21802505 21802570 7.860000e-21 111.0
20 TraesCS1B01G034100 chr7B 93.617 141 5 2 2383 2523 192786231 192786095 9.740000e-50 207.0
21 TraesCS1B01G034100 chr2B 93.617 141 5 2 2383 2523 47184053 47184189 9.740000e-50 207.0
22 TraesCS1B01G034100 chr4A 98.462 65 1 0 1 65 562500483 562500419 6.070000e-22 115.0
23 TraesCS1B01G034100 chr3B 98.462 65 1 0 1 65 5340888 5340824 6.070000e-22 115.0
24 TraesCS1B01G034100 chrUn 96.923 65 2 0 1 65 328439946 328440010 2.830000e-20 110.0
25 TraesCS1B01G034100 chrUn 96.923 65 2 0 1 65 359637433 359637497 2.830000e-20 110.0
26 TraesCS1B01G034100 chr3D 81.967 122 14 7 1 116 561727950 561728069 2.200000e-16 97.1
27 TraesCS1B01G034100 chr2A 90.196 51 3 2 1112 1161 18029545 18029594 6.200000e-07 65.8
28 TraesCS1B01G034100 chr6D 96.970 33 1 0 1129 1161 429489360 429489328 3.730000e-04 56.5
29 TraesCS1B01G034100 chr6B 100.000 28 0 0 1129 1156 647172683 647172656 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G034100 chr1B 16477350 16480034 2684 False 4959 4959 100.0000 1 2685 1 chr1B.!!$F2 2684
1 TraesCS1B01G034100 chr1B 16692507 16694061 1554 False 2313 2313 93.5900 444 1993 1 chr1B.!!$F4 1549
2 TraesCS1B01G034100 chr1B 16645423 16646838 1415 False 2019 2019 92.3400 1220 2649 1 chr1B.!!$F3 1429
3 TraesCS1B01G034100 chr1A 22632457 22634729 2272 True 3121 3121 91.4850 409 2685 1 chr1A.!!$R2 2276
4 TraesCS1B01G034100 chr1A 12697781 12698839 1058 True 1469 1469 91.7220 914 1972 1 chr1A.!!$R1 1058
5 TraesCS1B01G034100 chr1A 12686574 12688957 2383 True 332 457 92.5440 2055 2523 2 chr1A.!!$R3 468
6 TraesCS1B01G034100 chr1D 11123100 11125392 2292 False 3092 3092 91.0500 382 2685 1 chr1D.!!$F1 2303
7 TraesCS1B01G034100 chr1D 11040410 11042113 1703 False 815 845 88.5645 382 2685 2 chr1D.!!$F3 2303
8 TraesCS1B01G034100 chr1D 11089186 11090828 1642 False 757 769 87.9295 432 2685 2 chr1D.!!$F4 2253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 402 0.032017 AGTCCTCCCCGCTTATCTGT 60.032 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2199 0.03716 GTAGCGGAAGGTGGGGAAAA 59.963 55.0 0.0 0.0 44.53 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.798975 AATGTAGGATAGTTGAGATTAAGGGA 57.201 34.615 0.00 0.00 0.00 4.20
51 52 7.841282 TGTAGGATAGTTGAGATTAAGGGAG 57.159 40.000 0.00 0.00 0.00 4.30
52 53 6.782988 TGTAGGATAGTTGAGATTAAGGGAGG 59.217 42.308 0.00 0.00 0.00 4.30
53 54 5.158889 AGGATAGTTGAGATTAAGGGAGGG 58.841 45.833 0.00 0.00 0.00 4.30
54 55 4.908481 GGATAGTTGAGATTAAGGGAGGGT 59.092 45.833 0.00 0.00 0.00 4.34
55 56 5.221742 GGATAGTTGAGATTAAGGGAGGGTG 60.222 48.000 0.00 0.00 0.00 4.61
56 57 3.532102 AGTTGAGATTAAGGGAGGGTGT 58.468 45.455 0.00 0.00 0.00 4.16
57 58 3.916989 AGTTGAGATTAAGGGAGGGTGTT 59.083 43.478 0.00 0.00 0.00 3.32
58 59 5.098663 AGTTGAGATTAAGGGAGGGTGTTA 58.901 41.667 0.00 0.00 0.00 2.41
59 60 5.189934 AGTTGAGATTAAGGGAGGGTGTTAG 59.810 44.000 0.00 0.00 0.00 2.34
60 61 4.955335 TGAGATTAAGGGAGGGTGTTAGA 58.045 43.478 0.00 0.00 0.00 2.10
61 62 4.715297 TGAGATTAAGGGAGGGTGTTAGAC 59.285 45.833 0.00 0.00 0.00 2.59
62 63 4.695606 AGATTAAGGGAGGGTGTTAGACA 58.304 43.478 0.00 0.00 0.00 3.41
63 64 5.289510 AGATTAAGGGAGGGTGTTAGACAT 58.710 41.667 0.00 0.00 0.00 3.06
64 65 6.449956 AGATTAAGGGAGGGTGTTAGACATA 58.550 40.000 0.00 0.00 0.00 2.29
65 66 7.082972 AGATTAAGGGAGGGTGTTAGACATAT 58.917 38.462 0.00 0.00 0.00 1.78
66 67 7.572861 AGATTAAGGGAGGGTGTTAGACATATT 59.427 37.037 0.00 0.00 0.00 1.28
67 68 5.373812 AAGGGAGGGTGTTAGACATATTG 57.626 43.478 0.00 0.00 0.00 1.90
68 69 3.716872 AGGGAGGGTGTTAGACATATTGG 59.283 47.826 0.00 0.00 0.00 3.16
69 70 3.458487 GGGAGGGTGTTAGACATATTGGT 59.542 47.826 0.00 0.00 0.00 3.67
70 71 4.079958 GGGAGGGTGTTAGACATATTGGTT 60.080 45.833 0.00 0.00 0.00 3.67
71 72 5.123936 GGAGGGTGTTAGACATATTGGTTC 58.876 45.833 0.00 0.00 0.00 3.62
72 73 5.104485 GGAGGGTGTTAGACATATTGGTTCT 60.104 44.000 0.00 0.00 0.00 3.01
73 74 5.745227 AGGGTGTTAGACATATTGGTTCTG 58.255 41.667 0.00 0.00 0.00 3.02
74 75 5.250774 AGGGTGTTAGACATATTGGTTCTGT 59.749 40.000 0.00 0.00 0.00 3.41
75 76 6.442564 AGGGTGTTAGACATATTGGTTCTGTA 59.557 38.462 0.00 0.00 0.00 2.74
76 77 6.537660 GGGTGTTAGACATATTGGTTCTGTAC 59.462 42.308 0.00 0.00 0.00 2.90
77 78 7.328737 GGTGTTAGACATATTGGTTCTGTACT 58.671 38.462 0.00 0.00 0.00 2.73
78 79 7.491696 GGTGTTAGACATATTGGTTCTGTACTC 59.508 40.741 0.00 0.00 0.00 2.59
79 80 8.251721 GTGTTAGACATATTGGTTCTGTACTCT 58.748 37.037 0.00 0.00 0.00 3.24
80 81 9.470399 TGTTAGACATATTGGTTCTGTACTCTA 57.530 33.333 0.00 0.00 0.00 2.43
91 92 9.483489 TTGGTTCTGTACTCTATTAATACTCCA 57.517 33.333 0.00 0.00 0.00 3.86
92 93 9.656323 TGGTTCTGTACTCTATTAATACTCCAT 57.344 33.333 0.00 0.00 0.00 3.41
93 94 9.915629 GGTTCTGTACTCTATTAATACTCCATG 57.084 37.037 0.00 0.00 0.00 3.66
107 108 4.762289 ACTCCATGTTATCTCAACCTCC 57.238 45.455 0.00 0.00 0.00 4.30
108 109 4.366267 ACTCCATGTTATCTCAACCTCCT 58.634 43.478 0.00 0.00 0.00 3.69
109 110 4.785376 ACTCCATGTTATCTCAACCTCCTT 59.215 41.667 0.00 0.00 0.00 3.36
110 111 5.104735 ACTCCATGTTATCTCAACCTCCTTC 60.105 44.000 0.00 0.00 0.00 3.46
111 112 5.032846 TCCATGTTATCTCAACCTCCTTCT 58.967 41.667 0.00 0.00 0.00 2.85
112 113 5.104776 TCCATGTTATCTCAACCTCCTTCTG 60.105 44.000 0.00 0.00 0.00 3.02
113 114 5.338708 CCATGTTATCTCAACCTCCTTCTGT 60.339 44.000 0.00 0.00 0.00 3.41
114 115 6.127054 CCATGTTATCTCAACCTCCTTCTGTA 60.127 42.308 0.00 0.00 0.00 2.74
115 116 7.419518 CCATGTTATCTCAACCTCCTTCTGTAT 60.420 40.741 0.00 0.00 0.00 2.29
116 117 7.113658 TGTTATCTCAACCTCCTTCTGTATC 57.886 40.000 0.00 0.00 0.00 2.24
117 118 6.897966 TGTTATCTCAACCTCCTTCTGTATCT 59.102 38.462 0.00 0.00 0.00 1.98
118 119 7.068839 TGTTATCTCAACCTCCTTCTGTATCTC 59.931 40.741 0.00 0.00 0.00 2.75
119 120 5.199982 TCTCAACCTCCTTCTGTATCTCT 57.800 43.478 0.00 0.00 0.00 3.10
120 121 5.584913 TCTCAACCTCCTTCTGTATCTCTT 58.415 41.667 0.00 0.00 0.00 2.85
121 122 6.019748 TCTCAACCTCCTTCTGTATCTCTTT 58.980 40.000 0.00 0.00 0.00 2.52
122 123 6.153680 TCTCAACCTCCTTCTGTATCTCTTTC 59.846 42.308 0.00 0.00 0.00 2.62
123 124 5.780282 TCAACCTCCTTCTGTATCTCTTTCA 59.220 40.000 0.00 0.00 0.00 2.69
124 125 6.270000 TCAACCTCCTTCTGTATCTCTTTCAA 59.730 38.462 0.00 0.00 0.00 2.69
125 126 6.688073 ACCTCCTTCTGTATCTCTTTCAAA 57.312 37.500 0.00 0.00 0.00 2.69
126 127 6.468543 ACCTCCTTCTGTATCTCTTTCAAAC 58.531 40.000 0.00 0.00 0.00 2.93
127 128 6.271159 ACCTCCTTCTGTATCTCTTTCAAACT 59.729 38.462 0.00 0.00 0.00 2.66
128 129 6.816140 CCTCCTTCTGTATCTCTTTCAAACTC 59.184 42.308 0.00 0.00 0.00 3.01
129 130 7.310361 CCTCCTTCTGTATCTCTTTCAAACTCT 60.310 40.741 0.00 0.00 0.00 3.24
130 131 7.967908 TCCTTCTGTATCTCTTTCAAACTCTT 58.032 34.615 0.00 0.00 0.00 2.85
131 132 7.875041 TCCTTCTGTATCTCTTTCAAACTCTTG 59.125 37.037 0.00 0.00 0.00 3.02
132 133 7.360776 CCTTCTGTATCTCTTTCAAACTCTTGC 60.361 40.741 0.00 0.00 32.14 4.01
133 134 5.934625 TCTGTATCTCTTTCAAACTCTTGCC 59.065 40.000 0.00 0.00 32.14 4.52
134 135 5.869579 TGTATCTCTTTCAAACTCTTGCCT 58.130 37.500 0.00 0.00 32.14 4.75
135 136 7.004555 TGTATCTCTTTCAAACTCTTGCCTA 57.995 36.000 0.00 0.00 32.14 3.93
136 137 7.099764 TGTATCTCTTTCAAACTCTTGCCTAG 58.900 38.462 0.00 0.00 32.14 3.02
137 138 4.319177 TCTCTTTCAAACTCTTGCCTAGC 58.681 43.478 0.00 0.00 32.14 3.42
138 139 3.412386 TCTTTCAAACTCTTGCCTAGCC 58.588 45.455 0.00 0.00 32.14 3.93
139 140 2.200373 TTCAAACTCTTGCCTAGCCC 57.800 50.000 0.00 0.00 32.14 5.19
140 141 0.036388 TCAAACTCTTGCCTAGCCCG 60.036 55.000 0.00 0.00 32.14 6.13
141 142 0.036388 CAAACTCTTGCCTAGCCCGA 60.036 55.000 0.00 0.00 0.00 5.14
142 143 0.912486 AAACTCTTGCCTAGCCCGAT 59.088 50.000 0.00 0.00 0.00 4.18
143 144 0.466124 AACTCTTGCCTAGCCCGATC 59.534 55.000 0.00 0.00 0.00 3.69
144 145 0.687757 ACTCTTGCCTAGCCCGATCA 60.688 55.000 0.00 0.00 0.00 2.92
145 146 0.033228 CTCTTGCCTAGCCCGATCAG 59.967 60.000 0.00 0.00 0.00 2.90
146 147 0.397114 TCTTGCCTAGCCCGATCAGA 60.397 55.000 0.00 0.00 0.00 3.27
147 148 0.683973 CTTGCCTAGCCCGATCAGAT 59.316 55.000 0.00 0.00 0.00 2.90
148 149 0.681733 TTGCCTAGCCCGATCAGATC 59.318 55.000 0.00 0.00 0.00 2.75
149 150 0.469892 TGCCTAGCCCGATCAGATCA 60.470 55.000 11.12 0.00 0.00 2.92
150 151 0.246086 GCCTAGCCCGATCAGATCAG 59.754 60.000 11.12 0.00 0.00 2.90
151 152 0.894141 CCTAGCCCGATCAGATCAGG 59.106 60.000 11.12 9.65 0.00 3.86
152 153 1.548809 CCTAGCCCGATCAGATCAGGA 60.549 57.143 16.03 0.00 0.00 3.86
153 154 2.242926 CTAGCCCGATCAGATCAGGAA 58.757 52.381 16.03 3.00 0.00 3.36
154 155 1.727062 AGCCCGATCAGATCAGGAAT 58.273 50.000 16.03 1.47 0.00 3.01
155 156 1.622811 AGCCCGATCAGATCAGGAATC 59.377 52.381 16.03 7.92 34.30 2.52
156 157 1.671261 GCCCGATCAGATCAGGAATCG 60.671 57.143 16.03 3.98 39.55 3.34
157 158 1.889170 CCCGATCAGATCAGGAATCGA 59.111 52.381 17.89 0.00 39.55 3.59
158 159 2.495270 CCCGATCAGATCAGGAATCGAT 59.505 50.000 17.89 0.00 39.55 3.59
159 160 3.428725 CCCGATCAGATCAGGAATCGATC 60.429 52.174 17.89 0.00 39.55 3.69
161 162 4.693538 GATCAGATCAGGAATCGATCGA 57.306 45.455 21.86 21.86 43.35 3.59
162 163 4.661125 GATCAGATCAGGAATCGATCGAG 58.339 47.826 23.84 9.43 43.35 4.04
163 164 3.481453 TCAGATCAGGAATCGATCGAGT 58.519 45.455 23.84 21.64 43.35 4.18
164 165 3.500299 TCAGATCAGGAATCGATCGAGTC 59.500 47.826 31.52 31.52 43.35 3.36
170 171 2.500509 GAATCGATCGAGTCCTTGCT 57.499 50.000 29.85 6.04 33.67 3.91
171 172 2.815478 GAATCGATCGAGTCCTTGCTT 58.185 47.619 29.85 14.30 33.67 3.91
172 173 2.215907 ATCGATCGAGTCCTTGCTTG 57.784 50.000 23.84 0.00 0.00 4.01
173 174 0.888619 TCGATCGAGTCCTTGCTTGT 59.111 50.000 15.15 0.00 0.00 3.16
174 175 2.089201 TCGATCGAGTCCTTGCTTGTA 58.911 47.619 15.15 0.00 0.00 2.41
175 176 2.159421 TCGATCGAGTCCTTGCTTGTAC 60.159 50.000 15.15 0.00 0.00 2.90
176 177 2.186076 GATCGAGTCCTTGCTTGTACG 58.814 52.381 0.00 0.00 0.00 3.67
177 178 0.388134 TCGAGTCCTTGCTTGTACGC 60.388 55.000 0.00 0.00 0.00 4.42
178 179 1.352156 CGAGTCCTTGCTTGTACGCC 61.352 60.000 0.00 0.00 0.00 5.68
179 180 0.320421 GAGTCCTTGCTTGTACGCCA 60.320 55.000 0.00 0.00 0.00 5.69
180 181 0.602905 AGTCCTTGCTTGTACGCCAC 60.603 55.000 0.00 0.00 0.00 5.01
181 182 1.666553 TCCTTGCTTGTACGCCACG 60.667 57.895 0.00 0.00 0.00 4.94
182 183 1.666553 CCTTGCTTGTACGCCACGA 60.667 57.895 0.00 0.00 0.00 4.35
183 184 1.491563 CTTGCTTGTACGCCACGAC 59.508 57.895 0.00 0.00 0.00 4.34
184 185 2.210524 CTTGCTTGTACGCCACGACG 62.211 60.000 0.00 0.00 39.50 5.12
185 186 2.429571 GCTTGTACGCCACGACGA 60.430 61.111 0.00 0.00 36.70 4.20
186 187 2.434134 GCTTGTACGCCACGACGAG 61.434 63.158 0.00 0.00 36.70 4.18
187 188 1.800315 CTTGTACGCCACGACGAGG 60.800 63.158 6.99 6.99 36.70 4.63
188 189 3.271706 TTGTACGCCACGACGAGGG 62.272 63.158 13.38 9.45 36.70 4.30
193 194 4.070552 GCCACGACGAGGGCTTCT 62.071 66.667 22.08 0.00 46.74 2.85
194 195 2.182030 CCACGACGAGGGCTTCTC 59.818 66.667 0.00 0.00 39.10 2.87
205 206 2.981859 GGGCTTCTCGTCCTCAATAA 57.018 50.000 0.00 0.00 33.40 1.40
206 207 3.261981 GGGCTTCTCGTCCTCAATAAA 57.738 47.619 0.00 0.00 33.40 1.40
207 208 3.809905 GGGCTTCTCGTCCTCAATAAAT 58.190 45.455 0.00 0.00 33.40 1.40
208 209 4.957296 GGGCTTCTCGTCCTCAATAAATA 58.043 43.478 0.00 0.00 33.40 1.40
209 210 5.552178 GGGCTTCTCGTCCTCAATAAATAT 58.448 41.667 0.00 0.00 33.40 1.28
210 211 6.698380 GGGCTTCTCGTCCTCAATAAATATA 58.302 40.000 0.00 0.00 33.40 0.86
211 212 6.590677 GGGCTTCTCGTCCTCAATAAATATAC 59.409 42.308 0.00 0.00 33.40 1.47
212 213 7.152645 GGCTTCTCGTCCTCAATAAATATACA 58.847 38.462 0.00 0.00 0.00 2.29
213 214 7.656137 GGCTTCTCGTCCTCAATAAATATACAA 59.344 37.037 0.00 0.00 0.00 2.41
214 215 8.488764 GCTTCTCGTCCTCAATAAATATACAAC 58.511 37.037 0.00 0.00 0.00 3.32
215 216 9.529325 CTTCTCGTCCTCAATAAATATACAACA 57.471 33.333 0.00 0.00 0.00 3.33
217 218 9.476202 TCTCGTCCTCAATAAATATACAACATG 57.524 33.333 0.00 0.00 0.00 3.21
218 219 8.083462 TCGTCCTCAATAAATATACAACATGC 57.917 34.615 0.00 0.00 0.00 4.06
219 220 7.009440 CGTCCTCAATAAATATACAACATGCG 58.991 38.462 0.00 0.00 0.00 4.73
220 221 7.298122 GTCCTCAATAAATATACAACATGCGG 58.702 38.462 0.00 0.00 0.00 5.69
221 222 6.072728 TCCTCAATAAATATACAACATGCGGC 60.073 38.462 0.00 0.00 0.00 6.53
222 223 6.072508 CCTCAATAAATATACAACATGCGGCT 60.073 38.462 0.00 0.00 0.00 5.52
223 224 6.898041 TCAATAAATATACAACATGCGGCTC 58.102 36.000 0.00 0.00 0.00 4.70
224 225 5.880054 ATAAATATACAACATGCGGCTCC 57.120 39.130 0.00 0.00 0.00 4.70
225 226 2.185004 ATATACAACATGCGGCTCCC 57.815 50.000 0.00 0.00 0.00 4.30
226 227 1.128200 TATACAACATGCGGCTCCCT 58.872 50.000 0.00 0.00 0.00 4.20
227 228 0.179045 ATACAACATGCGGCTCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
228 229 1.264749 TACAACATGCGGCTCCCTCT 61.265 55.000 0.00 0.00 0.00 3.69
229 230 2.110967 CAACATGCGGCTCCCTCTG 61.111 63.158 0.00 0.00 0.00 3.35
230 231 3.335356 AACATGCGGCTCCCTCTGG 62.335 63.158 0.00 0.00 0.00 3.86
231 232 4.559063 CATGCGGCTCCCTCTGGG 62.559 72.222 0.00 0.00 46.11 4.45
242 243 1.817209 CCTCTGGGAGTAGGAACGC 59.183 63.158 0.00 0.00 34.58 4.84
243 244 0.684805 CCTCTGGGAGTAGGAACGCT 60.685 60.000 0.00 0.00 34.58 5.07
244 245 1.187087 CTCTGGGAGTAGGAACGCTT 58.813 55.000 0.00 0.00 0.00 4.68
245 246 1.135333 CTCTGGGAGTAGGAACGCTTC 59.865 57.143 0.00 0.00 0.00 3.86
257 258 3.955771 GAACGCTTCCAACTTTACACA 57.044 42.857 0.00 0.00 0.00 3.72
258 259 4.483476 GAACGCTTCCAACTTTACACAT 57.517 40.909 0.00 0.00 0.00 3.21
259 260 5.600908 GAACGCTTCCAACTTTACACATA 57.399 39.130 0.00 0.00 0.00 2.29
260 261 6.178239 GAACGCTTCCAACTTTACACATAT 57.822 37.500 0.00 0.00 0.00 1.78
261 262 5.796350 ACGCTTCCAACTTTACACATATC 57.204 39.130 0.00 0.00 0.00 1.63
262 263 5.242434 ACGCTTCCAACTTTACACATATCA 58.758 37.500 0.00 0.00 0.00 2.15
263 264 5.121768 ACGCTTCCAACTTTACACATATCAC 59.878 40.000 0.00 0.00 0.00 3.06
264 265 5.447279 CGCTTCCAACTTTACACATATCACC 60.447 44.000 0.00 0.00 0.00 4.02
265 266 5.648092 GCTTCCAACTTTACACATATCACCT 59.352 40.000 0.00 0.00 0.00 4.00
266 267 6.183360 GCTTCCAACTTTACACATATCACCTC 60.183 42.308 0.00 0.00 0.00 3.85
267 268 5.741011 TCCAACTTTACACATATCACCTCC 58.259 41.667 0.00 0.00 0.00 4.30
268 269 5.487488 TCCAACTTTACACATATCACCTCCT 59.513 40.000 0.00 0.00 0.00 3.69
269 270 6.012858 TCCAACTTTACACATATCACCTCCTT 60.013 38.462 0.00 0.00 0.00 3.36
270 271 7.181305 TCCAACTTTACACATATCACCTCCTTA 59.819 37.037 0.00 0.00 0.00 2.69
271 272 7.993183 CCAACTTTACACATATCACCTCCTTAT 59.007 37.037 0.00 0.00 0.00 1.73
272 273 9.046296 CAACTTTACACATATCACCTCCTTATC 57.954 37.037 0.00 0.00 0.00 1.75
273 274 8.554490 ACTTTACACATATCACCTCCTTATCT 57.446 34.615 0.00 0.00 0.00 1.98
274 275 8.643324 ACTTTACACATATCACCTCCTTATCTC 58.357 37.037 0.00 0.00 0.00 2.75
275 276 5.713792 ACACATATCACCTCCTTATCTCG 57.286 43.478 0.00 0.00 0.00 4.04
276 277 4.021894 ACACATATCACCTCCTTATCTCGC 60.022 45.833 0.00 0.00 0.00 5.03
277 278 3.511934 ACATATCACCTCCTTATCTCGCC 59.488 47.826 0.00 0.00 0.00 5.54
278 279 2.390225 ATCACCTCCTTATCTCGCCT 57.610 50.000 0.00 0.00 0.00 5.52
279 280 1.693627 TCACCTCCTTATCTCGCCTC 58.306 55.000 0.00 0.00 0.00 4.70
280 281 1.215673 TCACCTCCTTATCTCGCCTCT 59.784 52.381 0.00 0.00 0.00 3.69
281 282 2.442126 TCACCTCCTTATCTCGCCTCTA 59.558 50.000 0.00 0.00 0.00 2.43
282 283 2.817258 CACCTCCTTATCTCGCCTCTAG 59.183 54.545 0.00 0.00 0.00 2.43
283 284 1.816224 CCTCCTTATCTCGCCTCTAGC 59.184 57.143 0.00 0.00 38.52 3.42
284 285 2.554344 CCTCCTTATCTCGCCTCTAGCT 60.554 54.545 0.00 0.00 40.39 3.32
285 286 2.747446 CTCCTTATCTCGCCTCTAGCTC 59.253 54.545 0.00 0.00 40.39 4.09
286 287 2.106684 TCCTTATCTCGCCTCTAGCTCA 59.893 50.000 0.00 0.00 40.39 4.26
287 288 2.887783 CCTTATCTCGCCTCTAGCTCAA 59.112 50.000 0.00 0.00 40.39 3.02
288 289 3.057596 CCTTATCTCGCCTCTAGCTCAAG 60.058 52.174 0.00 0.00 40.39 3.02
289 290 2.356665 ATCTCGCCTCTAGCTCAAGA 57.643 50.000 0.00 0.00 40.39 3.02
290 291 1.384525 TCTCGCCTCTAGCTCAAGAC 58.615 55.000 0.00 0.00 40.39 3.01
291 292 1.098869 CTCGCCTCTAGCTCAAGACA 58.901 55.000 0.00 0.00 40.39 3.41
292 293 1.680735 CTCGCCTCTAGCTCAAGACAT 59.319 52.381 0.00 0.00 40.39 3.06
293 294 2.100584 CTCGCCTCTAGCTCAAGACATT 59.899 50.000 0.00 0.00 40.39 2.71
294 295 2.099921 TCGCCTCTAGCTCAAGACATTC 59.900 50.000 0.00 0.00 40.39 2.67
295 296 2.159184 CGCCTCTAGCTCAAGACATTCA 60.159 50.000 0.00 0.00 40.39 2.57
296 297 3.492309 CGCCTCTAGCTCAAGACATTCAT 60.492 47.826 0.00 0.00 40.39 2.57
297 298 3.808726 GCCTCTAGCTCAAGACATTCATG 59.191 47.826 0.00 0.00 38.99 3.07
298 299 4.442612 GCCTCTAGCTCAAGACATTCATGA 60.443 45.833 0.00 0.00 38.99 3.07
299 300 5.049167 CCTCTAGCTCAAGACATTCATGAC 58.951 45.833 0.00 0.00 0.00 3.06
300 301 5.394993 CCTCTAGCTCAAGACATTCATGACA 60.395 44.000 0.00 0.00 0.00 3.58
301 302 6.041423 TCTAGCTCAAGACATTCATGACAA 57.959 37.500 0.00 0.00 0.00 3.18
302 303 6.104665 TCTAGCTCAAGACATTCATGACAAG 58.895 40.000 0.00 0.00 0.00 3.16
303 304 4.649692 AGCTCAAGACATTCATGACAAGT 58.350 39.130 0.00 0.00 0.00 3.16
304 305 5.068636 AGCTCAAGACATTCATGACAAGTT 58.931 37.500 0.00 0.00 0.00 2.66
305 306 5.533903 AGCTCAAGACATTCATGACAAGTTT 59.466 36.000 0.00 0.00 0.00 2.66
306 307 6.712095 AGCTCAAGACATTCATGACAAGTTTA 59.288 34.615 0.00 0.00 0.00 2.01
307 308 7.229306 AGCTCAAGACATTCATGACAAGTTTAA 59.771 33.333 0.00 0.00 0.00 1.52
308 309 7.536622 GCTCAAGACATTCATGACAAGTTTAAG 59.463 37.037 0.00 0.00 0.00 1.85
309 310 7.362662 TCAAGACATTCATGACAAGTTTAAGC 58.637 34.615 0.00 0.00 0.00 3.09
310 311 6.882610 AGACATTCATGACAAGTTTAAGCA 57.117 33.333 0.00 0.00 0.00 3.91
311 312 7.458409 AGACATTCATGACAAGTTTAAGCAT 57.542 32.000 0.00 0.00 0.00 3.79
312 313 7.533426 AGACATTCATGACAAGTTTAAGCATC 58.467 34.615 0.00 0.00 0.00 3.91
313 314 7.175467 AGACATTCATGACAAGTTTAAGCATCA 59.825 33.333 0.00 0.00 0.00 3.07
314 315 7.086376 ACATTCATGACAAGTTTAAGCATCAC 58.914 34.615 0.00 0.00 0.00 3.06
315 316 5.627499 TCATGACAAGTTTAAGCATCACC 57.373 39.130 0.00 0.00 0.00 4.02
316 317 4.154015 TCATGACAAGTTTAAGCATCACCG 59.846 41.667 0.00 0.00 0.00 4.94
317 318 2.811431 TGACAAGTTTAAGCATCACCGG 59.189 45.455 0.00 0.00 0.00 5.28
318 319 2.812011 GACAAGTTTAAGCATCACCGGT 59.188 45.455 0.00 0.00 0.00 5.28
319 320 2.552315 ACAAGTTTAAGCATCACCGGTG 59.448 45.455 29.26 29.26 0.00 4.94
320 321 2.552315 CAAGTTTAAGCATCACCGGTGT 59.448 45.455 32.74 18.15 0.00 4.16
321 322 3.688694 AGTTTAAGCATCACCGGTGTA 57.311 42.857 32.74 20.21 0.00 2.90
322 323 4.010667 AGTTTAAGCATCACCGGTGTAA 57.989 40.909 32.74 20.49 0.00 2.41
323 324 4.585879 AGTTTAAGCATCACCGGTGTAAT 58.414 39.130 32.74 18.27 0.00 1.89
324 325 5.007682 AGTTTAAGCATCACCGGTGTAATT 58.992 37.500 32.74 23.35 0.00 1.40
325 326 6.174760 AGTTTAAGCATCACCGGTGTAATTA 58.825 36.000 32.74 22.44 0.00 1.40
326 327 6.826741 AGTTTAAGCATCACCGGTGTAATTAT 59.173 34.615 32.74 16.75 0.00 1.28
327 328 6.854496 TTAAGCATCACCGGTGTAATTATC 57.146 37.500 32.74 15.84 0.00 1.75
328 329 4.689612 AGCATCACCGGTGTAATTATCT 57.310 40.909 32.74 17.59 0.00 1.98
329 330 4.632153 AGCATCACCGGTGTAATTATCTC 58.368 43.478 32.74 12.78 0.00 2.75
330 331 3.746492 GCATCACCGGTGTAATTATCTCC 59.254 47.826 32.74 6.84 0.00 3.71
331 332 4.315803 CATCACCGGTGTAATTATCTCCC 58.684 47.826 32.74 0.00 0.00 4.30
332 333 3.649843 TCACCGGTGTAATTATCTCCCT 58.350 45.455 32.74 0.00 0.00 4.20
333 334 4.035112 TCACCGGTGTAATTATCTCCCTT 58.965 43.478 32.74 0.00 0.00 3.95
334 335 4.127171 CACCGGTGTAATTATCTCCCTTG 58.873 47.826 26.95 0.00 0.00 3.61
335 336 3.135895 ACCGGTGTAATTATCTCCCTTGG 59.864 47.826 6.12 0.00 0.00 3.61
336 337 3.139077 CGGTGTAATTATCTCCCTTGGC 58.861 50.000 0.00 0.00 0.00 4.52
337 338 3.487372 GGTGTAATTATCTCCCTTGGCC 58.513 50.000 0.00 0.00 0.00 5.36
338 339 3.117663 GGTGTAATTATCTCCCTTGGCCA 60.118 47.826 0.00 0.00 0.00 5.36
339 340 4.532834 GTGTAATTATCTCCCTTGGCCAA 58.467 43.478 19.25 19.25 0.00 4.52
340 341 5.140454 GTGTAATTATCTCCCTTGGCCAAT 58.860 41.667 20.85 5.30 0.00 3.16
341 342 5.241728 GTGTAATTATCTCCCTTGGCCAATC 59.758 44.000 20.85 0.00 0.00 2.67
342 343 4.821532 AATTATCTCCCTTGGCCAATCT 57.178 40.909 20.85 2.88 0.00 2.40
343 344 3.582998 TTATCTCCCTTGGCCAATCTG 57.417 47.619 20.85 10.60 0.00 2.90
344 345 0.554792 ATCTCCCTTGGCCAATCTGG 59.445 55.000 20.85 19.28 41.55 3.86
345 346 0.549902 TCTCCCTTGGCCAATCTGGA 60.550 55.000 20.85 22.22 40.96 3.86
346 347 0.332632 CTCCCTTGGCCAATCTGGAA 59.667 55.000 20.85 0.00 40.96 3.53
347 348 0.039618 TCCCTTGGCCAATCTGGAAC 59.960 55.000 20.85 0.00 40.96 3.62
348 349 1.315257 CCCTTGGCCAATCTGGAACG 61.315 60.000 20.85 4.20 40.96 3.95
349 350 1.315257 CCTTGGCCAATCTGGAACGG 61.315 60.000 20.85 10.33 40.96 4.44
358 359 2.662309 TCTGGAACGGAGGTGGTAC 58.338 57.895 0.00 0.00 39.80 3.34
359 360 0.178955 TCTGGAACGGAGGTGGTACA 60.179 55.000 0.00 0.00 39.80 2.90
360 361 0.682852 CTGGAACGGAGGTGGTACAA 59.317 55.000 0.00 0.00 36.99 2.41
361 362 1.071071 CTGGAACGGAGGTGGTACAAA 59.929 52.381 0.00 0.00 36.99 2.83
362 363 1.489649 TGGAACGGAGGTGGTACAAAA 59.510 47.619 0.00 0.00 44.16 2.44
363 364 2.092538 TGGAACGGAGGTGGTACAAAAA 60.093 45.455 0.00 0.00 44.16 1.94
386 387 2.427812 AGTTCTTCCGCTAGCTTAGTCC 59.572 50.000 13.93 3.00 0.00 3.85
401 402 0.032017 AGTCCTCCCCGCTTATCTGT 60.032 55.000 0.00 0.00 0.00 3.41
402 403 1.217183 AGTCCTCCCCGCTTATCTGTA 59.783 52.381 0.00 0.00 0.00 2.74
407 408 4.165372 TCCTCCCCGCTTATCTGTATTTTT 59.835 41.667 0.00 0.00 0.00 1.94
417 419 7.280205 CGCTTATCTGTATTTTTGTTACTCCCT 59.720 37.037 0.00 0.00 0.00 4.20
424 426 6.834451 TGTATTTTTGTTACTCCCTTTGTCCA 59.166 34.615 0.00 0.00 0.00 4.02
438 440 5.339990 CCTTTGTCCAGTTTTATTATGCCG 58.660 41.667 0.00 0.00 0.00 5.69
439 441 5.124776 CCTTTGTCCAGTTTTATTATGCCGA 59.875 40.000 0.00 0.00 0.00 5.54
441 443 6.576662 TTGTCCAGTTTTATTATGCCGAAA 57.423 33.333 0.00 0.00 0.00 3.46
539 542 7.385752 TGTGAATTCTCTTTTGAATGCAAATCC 59.614 33.333 7.05 0.00 41.93 3.01
667 690 4.494811 CGCAAGTAGCCGACATGA 57.505 55.556 0.00 0.00 41.38 3.07
668 691 2.977700 CGCAAGTAGCCGACATGAT 58.022 52.632 0.00 0.00 41.38 2.45
669 692 0.855349 CGCAAGTAGCCGACATGATC 59.145 55.000 0.00 0.00 41.38 2.92
670 693 1.536922 CGCAAGTAGCCGACATGATCT 60.537 52.381 0.00 0.00 41.38 2.75
671 694 2.287608 CGCAAGTAGCCGACATGATCTA 60.288 50.000 0.00 0.00 41.38 1.98
672 695 3.053455 GCAAGTAGCCGACATGATCTAC 58.947 50.000 0.00 5.17 37.23 2.59
673 696 3.490933 GCAAGTAGCCGACATGATCTACA 60.491 47.826 0.00 0.00 35.19 2.74
674 697 3.992260 AGTAGCCGACATGATCTACAC 57.008 47.619 0.00 0.00 35.19 2.90
675 698 2.623889 AGTAGCCGACATGATCTACACC 59.376 50.000 0.00 0.00 35.19 4.16
676 699 0.385751 AGCCGACATGATCTACACCG 59.614 55.000 0.00 0.00 0.00 4.94
677 700 0.384309 GCCGACATGATCTACACCGA 59.616 55.000 0.00 0.00 0.00 4.69
678 701 1.600663 GCCGACATGATCTACACCGAG 60.601 57.143 0.00 0.00 0.00 4.63
679 702 1.676529 CCGACATGATCTACACCGAGT 59.323 52.381 0.00 0.00 0.00 4.18
684 707 5.647589 GACATGATCTACACCGAGTTACAA 58.352 41.667 0.00 0.00 0.00 2.41
953 981 4.046489 AGCATCCTATCCCCATCTTCTCTA 59.954 45.833 0.00 0.00 0.00 2.43
981 1009 7.354942 TGATAGATCTTCCCTATAGATAGGCCT 59.645 40.741 11.78 11.78 46.88 5.19
984 1013 5.132043 TCTTCCCTATAGATAGGCCTAGC 57.868 47.826 20.69 20.69 46.88 3.42
1005 1034 4.698276 GCGTTATGCAAATACTCATACCG 58.302 43.478 0.00 0.00 45.45 4.02
1020 1049 3.056821 TCATACCGGTCAAGTTCAGAGTG 60.057 47.826 12.40 0.00 0.00 3.51
1031 1060 1.271102 GTTCAGAGTGAGCTCGAGGTT 59.729 52.381 19.66 2.22 46.03 3.50
1060 1089 3.861840 CTGGTGAGTAGTGTTGGGTATG 58.138 50.000 0.00 0.00 0.00 2.39
1079 1114 9.308000 TGGGTATGTATTCCATATTTTCCATTC 57.692 33.333 0.00 0.00 38.29 2.67
1122 1157 2.492019 TTCTCTGTATGCATCGTCCG 57.508 50.000 0.19 0.00 0.00 4.79
1124 1159 1.271446 CTCTGTATGCATCGTCCGCG 61.271 60.000 0.19 0.00 39.92 6.46
1127 1162 2.279186 TATGCATCGTCCGCGTGG 60.279 61.111 9.28 9.28 39.49 4.94
1319 1356 0.249238 GAATCGAGGATGAGCTGCGT 60.249 55.000 0.00 0.00 0.00 5.24
1365 1402 1.205893 GAGAAGAAGACGTCATGGCCT 59.794 52.381 19.50 8.83 0.00 5.19
1383 1420 2.257207 CCTGAGGTAGTGGGAAAGTCA 58.743 52.381 0.00 0.00 0.00 3.41
1454 1491 0.034670 GATGTCCTTCCTGCTGGCTT 60.035 55.000 4.42 0.00 0.00 4.35
1509 1546 1.531058 CGCATCATCGTCGACACTGTA 60.531 52.381 17.16 3.21 0.00 2.74
1516 1553 1.874562 GTCGACACTGTAGCGACCT 59.125 57.895 11.55 0.00 46.15 3.85
1652 1689 3.184541 GGCGTGTGTCGATGTACTTATT 58.815 45.455 0.00 0.00 42.86 1.40
1654 1691 3.000078 GCGTGTGTCGATGTACTTATTGG 60.000 47.826 0.00 0.00 42.86 3.16
1656 1693 5.334319 CGTGTGTCGATGTACTTATTGGTA 58.666 41.667 0.00 0.00 42.86 3.25
1788 1826 7.921786 TTCAACAACTTAGACCTAATGATGG 57.078 36.000 0.00 0.00 0.00 3.51
1867 1906 8.055181 GCCCCATGAGATATCTTAAATGGATTA 58.945 37.037 28.08 0.00 35.49 1.75
2030 2075 7.935338 TTTTTCTTTGAGAAATGCATGAGAC 57.065 32.000 0.00 0.00 43.06 3.36
2037 2082 5.550290 TGAGAAATGCATGAGACAAGTGTA 58.450 37.500 0.00 0.00 0.00 2.90
2137 2182 5.742453 CGTCATCGCAACACTAAGTAACTAT 59.258 40.000 0.00 0.00 0.00 2.12
2138 2183 6.908820 CGTCATCGCAACACTAAGTAACTATA 59.091 38.462 0.00 0.00 0.00 1.31
2171 2216 0.114364 AATTTTCCCCACCTTCCGCT 59.886 50.000 0.00 0.00 0.00 5.52
2184 2229 1.667724 CTTCCGCTACTCAAGGCAATG 59.332 52.381 0.00 0.00 0.00 2.82
2185 2230 0.744414 TCCGCTACTCAAGGCAATGC 60.744 55.000 0.00 0.00 0.00 3.56
2186 2231 0.745845 CCGCTACTCAAGGCAATGCT 60.746 55.000 4.82 0.00 0.00 3.79
2187 2232 0.654683 CGCTACTCAAGGCAATGCTC 59.345 55.000 4.82 0.00 0.00 4.26
2238 2283 2.700371 TGAAGCAGAGAGGTGTTCTTGA 59.300 45.455 0.00 0.00 35.87 3.02
2239 2284 3.134623 TGAAGCAGAGAGGTGTTCTTGAA 59.865 43.478 0.00 0.00 35.87 2.69
2240 2285 3.118905 AGCAGAGAGGTGTTCTTGAAC 57.881 47.619 6.56 6.56 35.87 3.18
2241 2286 2.703007 AGCAGAGAGGTGTTCTTGAACT 59.297 45.455 13.65 0.00 35.87 3.01
2284 2329 1.946156 ACATGCATCGTAGCGAGCG 60.946 57.895 0.00 0.00 39.91 5.03
2330 2375 2.614969 AGCTTGGGAGGGATGCCA 60.615 61.111 5.86 0.00 0.00 4.92
2375 2439 4.415332 ACGTCGCCGGTAGCACTG 62.415 66.667 1.90 0.00 44.04 3.66
2453 4445 3.251479 AGCACACGAAGCATCATTAGA 57.749 42.857 0.00 0.00 0.00 2.10
2485 4484 5.103000 CGTTTCCTTAGGTACACATCTCTG 58.897 45.833 0.00 0.00 0.00 3.35
2486 4485 5.336531 CGTTTCCTTAGGTACACATCTCTGT 60.337 44.000 0.00 0.00 35.44 3.41
2487 4486 6.465084 GTTTCCTTAGGTACACATCTCTGTT 58.535 40.000 0.00 0.00 31.62 3.16
2551 4550 7.142306 ACTTTTTAGAGGAAAGGTATTTCGC 57.858 36.000 0.00 0.00 44.87 4.70
2579 4579 8.306761 GTCCAGAATTGGTGATTAAAATTGAGT 58.693 33.333 0.00 0.00 45.26 3.41
2632 4632 4.276431 TGCATGGCATTGACATATACACAG 59.724 41.667 4.27 0.00 31.71 3.66
2678 4678 1.630369 CCCTGGATGGAACTTCACAGA 59.370 52.381 0.00 0.00 38.35 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.892444 TCCCTTAATCTCAACTATCCTACATTA 57.108 33.333 0.00 0.00 0.00 1.90
25 26 8.798975 TCCCTTAATCTCAACTATCCTACATT 57.201 34.615 0.00 0.00 0.00 2.71
26 27 7.456269 CCTCCCTTAATCTCAACTATCCTACAT 59.544 40.741 0.00 0.00 0.00 2.29
27 28 6.782988 CCTCCCTTAATCTCAACTATCCTACA 59.217 42.308 0.00 0.00 0.00 2.74
28 29 6.211785 CCCTCCCTTAATCTCAACTATCCTAC 59.788 46.154 0.00 0.00 0.00 3.18
29 30 6.125561 ACCCTCCCTTAATCTCAACTATCCTA 60.126 42.308 0.00 0.00 0.00 2.94
30 31 5.158889 CCCTCCCTTAATCTCAACTATCCT 58.841 45.833 0.00 0.00 0.00 3.24
31 32 4.908481 ACCCTCCCTTAATCTCAACTATCC 59.092 45.833 0.00 0.00 0.00 2.59
32 33 5.367060 ACACCCTCCCTTAATCTCAACTATC 59.633 44.000 0.00 0.00 0.00 2.08
33 34 5.289510 ACACCCTCCCTTAATCTCAACTAT 58.710 41.667 0.00 0.00 0.00 2.12
34 35 4.695606 ACACCCTCCCTTAATCTCAACTA 58.304 43.478 0.00 0.00 0.00 2.24
35 36 3.532102 ACACCCTCCCTTAATCTCAACT 58.468 45.455 0.00 0.00 0.00 3.16
36 37 4.302559 AACACCCTCCCTTAATCTCAAC 57.697 45.455 0.00 0.00 0.00 3.18
37 38 5.189145 GTCTAACACCCTCCCTTAATCTCAA 59.811 44.000 0.00 0.00 0.00 3.02
38 39 4.715297 GTCTAACACCCTCCCTTAATCTCA 59.285 45.833 0.00 0.00 0.00 3.27
39 40 4.715297 TGTCTAACACCCTCCCTTAATCTC 59.285 45.833 0.00 0.00 0.00 2.75
40 41 4.695606 TGTCTAACACCCTCCCTTAATCT 58.304 43.478 0.00 0.00 0.00 2.40
41 42 5.632034 ATGTCTAACACCCTCCCTTAATC 57.368 43.478 0.00 0.00 0.00 1.75
42 43 7.421382 CCAATATGTCTAACACCCTCCCTTAAT 60.421 40.741 0.00 0.00 0.00 1.40
43 44 6.126594 CCAATATGTCTAACACCCTCCCTTAA 60.127 42.308 0.00 0.00 0.00 1.85
44 45 5.368523 CCAATATGTCTAACACCCTCCCTTA 59.631 44.000 0.00 0.00 0.00 2.69
45 46 4.166144 CCAATATGTCTAACACCCTCCCTT 59.834 45.833 0.00 0.00 0.00 3.95
46 47 3.716872 CCAATATGTCTAACACCCTCCCT 59.283 47.826 0.00 0.00 0.00 4.20
47 48 3.458487 ACCAATATGTCTAACACCCTCCC 59.542 47.826 0.00 0.00 0.00 4.30
48 49 4.772886 ACCAATATGTCTAACACCCTCC 57.227 45.455 0.00 0.00 0.00 4.30
49 50 5.817816 CAGAACCAATATGTCTAACACCCTC 59.182 44.000 0.00 0.00 0.00 4.30
50 51 5.250774 ACAGAACCAATATGTCTAACACCCT 59.749 40.000 0.00 0.00 0.00 4.34
51 52 5.497474 ACAGAACCAATATGTCTAACACCC 58.503 41.667 0.00 0.00 0.00 4.61
52 53 7.328737 AGTACAGAACCAATATGTCTAACACC 58.671 38.462 0.00 0.00 0.00 4.16
53 54 8.251721 AGAGTACAGAACCAATATGTCTAACAC 58.748 37.037 0.00 0.00 0.00 3.32
54 55 8.362464 AGAGTACAGAACCAATATGTCTAACA 57.638 34.615 0.00 0.00 0.00 2.41
65 66 9.483489 TGGAGTATTAATAGAGTACAGAACCAA 57.517 33.333 0.00 0.00 0.00 3.67
66 67 9.656323 ATGGAGTATTAATAGAGTACAGAACCA 57.344 33.333 0.00 0.00 0.00 3.67
67 68 9.915629 CATGGAGTATTAATAGAGTACAGAACC 57.084 37.037 0.00 0.00 0.00 3.62
81 82 8.429641 GGAGGTTGAGATAACATGGAGTATTAA 58.570 37.037 0.00 0.00 0.00 1.40
82 83 7.789831 AGGAGGTTGAGATAACATGGAGTATTA 59.210 37.037 0.00 0.00 0.00 0.98
83 84 6.617371 AGGAGGTTGAGATAACATGGAGTATT 59.383 38.462 0.00 0.00 0.00 1.89
84 85 6.146760 AGGAGGTTGAGATAACATGGAGTAT 58.853 40.000 0.00 0.00 0.00 2.12
85 86 5.529289 AGGAGGTTGAGATAACATGGAGTA 58.471 41.667 0.00 0.00 0.00 2.59
86 87 4.366267 AGGAGGTTGAGATAACATGGAGT 58.634 43.478 0.00 0.00 0.00 3.85
87 88 5.130145 AGAAGGAGGTTGAGATAACATGGAG 59.870 44.000 0.00 0.00 0.00 3.86
88 89 5.032846 AGAAGGAGGTTGAGATAACATGGA 58.967 41.667 0.00 0.00 0.00 3.41
89 90 5.121811 CAGAAGGAGGTTGAGATAACATGG 58.878 45.833 0.00 0.00 0.00 3.66
90 91 5.738909 ACAGAAGGAGGTTGAGATAACATG 58.261 41.667 0.00 0.00 0.00 3.21
91 92 7.566879 AGATACAGAAGGAGGTTGAGATAACAT 59.433 37.037 0.00 0.00 0.00 2.71
92 93 6.897966 AGATACAGAAGGAGGTTGAGATAACA 59.102 38.462 0.00 0.00 0.00 2.41
93 94 7.286775 AGAGATACAGAAGGAGGTTGAGATAAC 59.713 40.741 0.00 0.00 0.00 1.89
94 95 7.358263 AGAGATACAGAAGGAGGTTGAGATAA 58.642 38.462 0.00 0.00 0.00 1.75
95 96 6.916909 AGAGATACAGAAGGAGGTTGAGATA 58.083 40.000 0.00 0.00 0.00 1.98
96 97 5.776358 AGAGATACAGAAGGAGGTTGAGAT 58.224 41.667 0.00 0.00 0.00 2.75
97 98 5.199982 AGAGATACAGAAGGAGGTTGAGA 57.800 43.478 0.00 0.00 0.00 3.27
98 99 5.930837 AAGAGATACAGAAGGAGGTTGAG 57.069 43.478 0.00 0.00 0.00 3.02
99 100 5.780282 TGAAAGAGATACAGAAGGAGGTTGA 59.220 40.000 0.00 0.00 0.00 3.18
100 101 6.042638 TGAAAGAGATACAGAAGGAGGTTG 57.957 41.667 0.00 0.00 0.00 3.77
101 102 6.688073 TTGAAAGAGATACAGAAGGAGGTT 57.312 37.500 0.00 0.00 0.00 3.50
102 103 6.271159 AGTTTGAAAGAGATACAGAAGGAGGT 59.729 38.462 0.00 0.00 0.00 3.85
103 104 6.706295 AGTTTGAAAGAGATACAGAAGGAGG 58.294 40.000 0.00 0.00 0.00 4.30
104 105 7.610865 AGAGTTTGAAAGAGATACAGAAGGAG 58.389 38.462 0.00 0.00 0.00 3.69
105 106 7.546250 AGAGTTTGAAAGAGATACAGAAGGA 57.454 36.000 0.00 0.00 0.00 3.36
106 107 7.360776 GCAAGAGTTTGAAAGAGATACAGAAGG 60.361 40.741 0.00 0.00 36.36 3.46
107 108 7.360776 GGCAAGAGTTTGAAAGAGATACAGAAG 60.361 40.741 0.00 0.00 36.36 2.85
108 109 6.428159 GGCAAGAGTTTGAAAGAGATACAGAA 59.572 38.462 0.00 0.00 36.36 3.02
109 110 5.934625 GGCAAGAGTTTGAAAGAGATACAGA 59.065 40.000 0.00 0.00 36.36 3.41
110 111 5.936956 AGGCAAGAGTTTGAAAGAGATACAG 59.063 40.000 0.00 0.00 36.36 2.74
111 112 5.869579 AGGCAAGAGTTTGAAAGAGATACA 58.130 37.500 0.00 0.00 36.36 2.29
112 113 6.036626 GCTAGGCAAGAGTTTGAAAGAGATAC 59.963 42.308 0.00 0.00 36.36 2.24
113 114 6.109359 GCTAGGCAAGAGTTTGAAAGAGATA 58.891 40.000 0.00 0.00 36.36 1.98
114 115 4.940654 GCTAGGCAAGAGTTTGAAAGAGAT 59.059 41.667 0.00 0.00 36.36 2.75
115 116 4.319177 GCTAGGCAAGAGTTTGAAAGAGA 58.681 43.478 0.00 0.00 36.36 3.10
116 117 3.438434 GGCTAGGCAAGAGTTTGAAAGAG 59.562 47.826 12.16 0.00 36.36 2.85
117 118 3.412386 GGCTAGGCAAGAGTTTGAAAGA 58.588 45.455 12.16 0.00 36.36 2.52
118 119 2.489722 GGGCTAGGCAAGAGTTTGAAAG 59.510 50.000 19.14 0.00 36.36 2.62
119 120 2.514803 GGGCTAGGCAAGAGTTTGAAA 58.485 47.619 19.14 0.00 36.36 2.69
120 121 1.610624 CGGGCTAGGCAAGAGTTTGAA 60.611 52.381 19.14 0.00 36.36 2.69
121 122 0.036388 CGGGCTAGGCAAGAGTTTGA 60.036 55.000 19.14 0.00 36.36 2.69
122 123 0.036388 TCGGGCTAGGCAAGAGTTTG 60.036 55.000 19.14 0.00 37.36 2.93
123 124 0.912486 ATCGGGCTAGGCAAGAGTTT 59.088 50.000 19.14 0.00 0.00 2.66
124 125 0.466124 GATCGGGCTAGGCAAGAGTT 59.534 55.000 19.14 2.94 0.00 3.01
125 126 0.687757 TGATCGGGCTAGGCAAGAGT 60.688 55.000 19.14 7.05 0.00 3.24
126 127 0.033228 CTGATCGGGCTAGGCAAGAG 59.967 60.000 19.14 6.32 0.00 2.85
127 128 0.397114 TCTGATCGGGCTAGGCAAGA 60.397 55.000 19.14 16.42 0.00 3.02
128 129 0.683973 ATCTGATCGGGCTAGGCAAG 59.316 55.000 19.14 11.43 0.00 4.01
129 130 0.681733 GATCTGATCGGGCTAGGCAA 59.318 55.000 19.14 5.83 0.00 4.52
130 131 0.469892 TGATCTGATCGGGCTAGGCA 60.470 55.000 19.14 0.00 0.00 4.75
131 132 0.246086 CTGATCTGATCGGGCTAGGC 59.754 60.000 17.04 8.00 31.92 3.93
138 139 3.768406 GATCGATTCCTGATCTGATCGG 58.232 50.000 17.73 17.73 39.30 4.18
140 141 4.155826 ACTCGATCGATTCCTGATCTGATC 59.844 45.833 19.78 10.72 40.05 2.92
141 142 4.078537 ACTCGATCGATTCCTGATCTGAT 58.921 43.478 19.78 0.00 40.05 2.90
142 143 3.481453 ACTCGATCGATTCCTGATCTGA 58.519 45.455 19.78 0.00 40.05 3.27
143 144 3.365868 GGACTCGATCGATTCCTGATCTG 60.366 52.174 34.80 16.90 39.82 2.90
144 145 2.817258 GGACTCGATCGATTCCTGATCT 59.183 50.000 34.80 5.19 39.82 2.75
145 146 3.210358 GGACTCGATCGATTCCTGATC 57.790 52.381 34.80 16.67 39.82 2.92
150 151 1.067821 AGCAAGGACTCGATCGATTCC 59.932 52.381 35.04 35.04 42.24 3.01
151 152 2.500509 AGCAAGGACTCGATCGATTC 57.499 50.000 23.09 23.09 0.00 2.52
152 153 2.093973 ACAAGCAAGGACTCGATCGATT 60.094 45.455 19.78 13.73 0.00 3.34
153 154 1.478510 ACAAGCAAGGACTCGATCGAT 59.521 47.619 19.78 8.99 0.00 3.59
154 155 0.888619 ACAAGCAAGGACTCGATCGA 59.111 50.000 18.32 18.32 0.00 3.59
155 156 2.186076 GTACAAGCAAGGACTCGATCG 58.814 52.381 9.36 9.36 0.00 3.69
156 157 2.186076 CGTACAAGCAAGGACTCGATC 58.814 52.381 0.00 0.00 0.00 3.69
157 158 1.736032 GCGTACAAGCAAGGACTCGAT 60.736 52.381 0.00 0.00 37.05 3.59
158 159 0.388134 GCGTACAAGCAAGGACTCGA 60.388 55.000 0.00 0.00 37.05 4.04
159 160 1.352156 GGCGTACAAGCAAGGACTCG 61.352 60.000 0.00 0.00 39.27 4.18
160 161 0.320421 TGGCGTACAAGCAAGGACTC 60.320 55.000 0.00 0.00 39.27 3.36
161 162 0.602905 GTGGCGTACAAGCAAGGACT 60.603 55.000 0.00 0.00 39.27 3.85
162 163 1.866925 GTGGCGTACAAGCAAGGAC 59.133 57.895 0.00 0.00 39.27 3.85
163 164 1.666553 CGTGGCGTACAAGCAAGGA 60.667 57.895 0.00 0.00 39.27 3.36
164 165 1.666553 TCGTGGCGTACAAGCAAGG 60.667 57.895 0.00 0.00 39.27 3.61
165 166 1.491563 GTCGTGGCGTACAAGCAAG 59.508 57.895 0.00 0.00 39.27 4.01
166 167 2.304401 CGTCGTGGCGTACAAGCAA 61.304 57.895 0.00 0.00 39.27 3.91
167 168 2.731721 CGTCGTGGCGTACAAGCA 60.732 61.111 0.00 0.00 39.27 3.91
168 169 2.429571 TCGTCGTGGCGTACAAGC 60.430 61.111 0.00 0.00 0.00 4.01
169 170 1.800315 CCTCGTCGTGGCGTACAAG 60.800 63.158 0.00 0.00 0.00 3.16
170 171 2.256158 CCTCGTCGTGGCGTACAA 59.744 61.111 0.00 0.00 0.00 2.41
171 172 3.740397 CCCTCGTCGTGGCGTACA 61.740 66.667 7.84 0.00 0.00 2.90
177 178 2.182030 GAGAAGCCCTCGTCGTGG 59.818 66.667 6.36 6.36 31.32 4.94
184 185 0.827368 ATTGAGGACGAGAAGCCCTC 59.173 55.000 0.00 0.00 45.07 4.30
185 186 2.160721 TATTGAGGACGAGAAGCCCT 57.839 50.000 0.00 0.00 0.00 5.19
186 187 2.981859 TTATTGAGGACGAGAAGCCC 57.018 50.000 0.00 0.00 0.00 5.19
187 188 7.152645 TGTATATTTATTGAGGACGAGAAGCC 58.847 38.462 0.00 0.00 0.00 4.35
188 189 8.488764 GTTGTATATTTATTGAGGACGAGAAGC 58.511 37.037 0.00 0.00 0.00 3.86
189 190 9.529325 TGTTGTATATTTATTGAGGACGAGAAG 57.471 33.333 0.00 0.00 0.00 2.85
191 192 9.476202 CATGTTGTATATTTATTGAGGACGAGA 57.524 33.333 0.00 0.00 0.00 4.04
192 193 8.223769 GCATGTTGTATATTTATTGAGGACGAG 58.776 37.037 0.00 0.00 0.00 4.18
193 194 7.095816 CGCATGTTGTATATTTATTGAGGACGA 60.096 37.037 0.00 0.00 0.00 4.20
194 195 7.009440 CGCATGTTGTATATTTATTGAGGACG 58.991 38.462 0.00 0.00 0.00 4.79
195 196 7.298122 CCGCATGTTGTATATTTATTGAGGAC 58.702 38.462 0.00 0.00 0.00 3.85
196 197 6.072728 GCCGCATGTTGTATATTTATTGAGGA 60.073 38.462 0.00 0.00 0.00 3.71
197 198 6.072508 AGCCGCATGTTGTATATTTATTGAGG 60.073 38.462 0.00 0.00 0.00 3.86
198 199 6.902341 AGCCGCATGTTGTATATTTATTGAG 58.098 36.000 0.00 0.00 0.00 3.02
199 200 6.072728 GGAGCCGCATGTTGTATATTTATTGA 60.073 38.462 0.00 0.00 0.00 2.57
200 201 6.086222 GGAGCCGCATGTTGTATATTTATTG 58.914 40.000 0.00 0.00 0.00 1.90
201 202 5.183140 GGGAGCCGCATGTTGTATATTTATT 59.817 40.000 0.00 0.00 0.00 1.40
202 203 4.700213 GGGAGCCGCATGTTGTATATTTAT 59.300 41.667 0.00 0.00 0.00 1.40
203 204 4.069304 GGGAGCCGCATGTTGTATATTTA 58.931 43.478 0.00 0.00 0.00 1.40
204 205 2.884639 GGGAGCCGCATGTTGTATATTT 59.115 45.455 0.00 0.00 0.00 1.40
205 206 2.106511 AGGGAGCCGCATGTTGTATATT 59.893 45.455 0.00 0.00 0.00 1.28
206 207 1.699634 AGGGAGCCGCATGTTGTATAT 59.300 47.619 0.00 0.00 0.00 0.86
207 208 1.070134 GAGGGAGCCGCATGTTGTATA 59.930 52.381 0.00 0.00 0.00 1.47
208 209 0.179045 GAGGGAGCCGCATGTTGTAT 60.179 55.000 0.00 0.00 0.00 2.29
209 210 1.220749 GAGGGAGCCGCATGTTGTA 59.779 57.895 0.00 0.00 0.00 2.41
210 211 2.045926 GAGGGAGCCGCATGTTGT 60.046 61.111 0.00 0.00 0.00 3.32
211 212 2.110967 CAGAGGGAGCCGCATGTTG 61.111 63.158 0.00 0.00 0.00 3.33
212 213 2.270205 CAGAGGGAGCCGCATGTT 59.730 61.111 0.00 0.00 0.00 2.71
213 214 3.790437 CCAGAGGGAGCCGCATGT 61.790 66.667 0.00 0.00 35.59 3.21
223 224 1.677637 GCGTTCCTACTCCCAGAGGG 61.678 65.000 0.00 0.00 46.11 4.30
224 225 0.684805 AGCGTTCCTACTCCCAGAGG 60.685 60.000 0.00 0.00 33.35 3.69
225 226 1.135333 GAAGCGTTCCTACTCCCAGAG 59.865 57.143 0.00 0.00 35.52 3.35
226 227 1.183549 GAAGCGTTCCTACTCCCAGA 58.816 55.000 0.00 0.00 0.00 3.86
227 228 0.175989 GGAAGCGTTCCTACTCCCAG 59.824 60.000 8.87 0.00 46.57 4.45
228 229 2.283824 GGAAGCGTTCCTACTCCCA 58.716 57.895 8.87 0.00 46.57 4.37
237 238 3.955771 TGTGTAAAGTTGGAAGCGTTC 57.044 42.857 0.00 0.00 0.00 3.95
238 239 5.703592 TGATATGTGTAAAGTTGGAAGCGTT 59.296 36.000 0.00 0.00 0.00 4.84
239 240 5.121768 GTGATATGTGTAAAGTTGGAAGCGT 59.878 40.000 0.00 0.00 0.00 5.07
240 241 5.447279 GGTGATATGTGTAAAGTTGGAAGCG 60.447 44.000 0.00 0.00 0.00 4.68
241 242 5.648092 AGGTGATATGTGTAAAGTTGGAAGC 59.352 40.000 0.00 0.00 0.00 3.86
242 243 6.316390 GGAGGTGATATGTGTAAAGTTGGAAG 59.684 42.308 0.00 0.00 0.00 3.46
243 244 6.012858 AGGAGGTGATATGTGTAAAGTTGGAA 60.013 38.462 0.00 0.00 0.00 3.53
244 245 5.487488 AGGAGGTGATATGTGTAAAGTTGGA 59.513 40.000 0.00 0.00 0.00 3.53
245 246 5.745227 AGGAGGTGATATGTGTAAAGTTGG 58.255 41.667 0.00 0.00 0.00 3.77
246 247 8.964476 ATAAGGAGGTGATATGTGTAAAGTTG 57.036 34.615 0.00 0.00 0.00 3.16
247 248 8.993424 AGATAAGGAGGTGATATGTGTAAAGTT 58.007 33.333 0.00 0.00 0.00 2.66
248 249 8.554490 AGATAAGGAGGTGATATGTGTAAAGT 57.446 34.615 0.00 0.00 0.00 2.66
249 250 7.810282 CGAGATAAGGAGGTGATATGTGTAAAG 59.190 40.741 0.00 0.00 0.00 1.85
250 251 7.658261 CGAGATAAGGAGGTGATATGTGTAAA 58.342 38.462 0.00 0.00 0.00 2.01
251 252 6.294564 GCGAGATAAGGAGGTGATATGTGTAA 60.295 42.308 0.00 0.00 0.00 2.41
252 253 5.183331 GCGAGATAAGGAGGTGATATGTGTA 59.817 44.000 0.00 0.00 0.00 2.90
253 254 4.021894 GCGAGATAAGGAGGTGATATGTGT 60.022 45.833 0.00 0.00 0.00 3.72
254 255 4.489810 GCGAGATAAGGAGGTGATATGTG 58.510 47.826 0.00 0.00 0.00 3.21
255 256 3.511934 GGCGAGATAAGGAGGTGATATGT 59.488 47.826 0.00 0.00 0.00 2.29
256 257 3.766591 AGGCGAGATAAGGAGGTGATATG 59.233 47.826 0.00 0.00 0.00 1.78
257 258 4.020543 GAGGCGAGATAAGGAGGTGATAT 58.979 47.826 0.00 0.00 0.00 1.63
258 259 3.074687 AGAGGCGAGATAAGGAGGTGATA 59.925 47.826 0.00 0.00 0.00 2.15
259 260 2.158385 AGAGGCGAGATAAGGAGGTGAT 60.158 50.000 0.00 0.00 0.00 3.06
260 261 1.215673 AGAGGCGAGATAAGGAGGTGA 59.784 52.381 0.00 0.00 0.00 4.02
261 262 1.698506 AGAGGCGAGATAAGGAGGTG 58.301 55.000 0.00 0.00 0.00 4.00
262 263 2.816337 GCTAGAGGCGAGATAAGGAGGT 60.816 54.545 0.00 0.00 0.00 3.85
263 264 1.816224 GCTAGAGGCGAGATAAGGAGG 59.184 57.143 0.00 0.00 0.00 4.30
275 276 3.533606 TGAATGTCTTGAGCTAGAGGC 57.466 47.619 0.00 0.00 42.19 4.70
276 277 5.049167 GTCATGAATGTCTTGAGCTAGAGG 58.951 45.833 0.00 0.00 32.24 3.69
277 278 5.658468 TGTCATGAATGTCTTGAGCTAGAG 58.342 41.667 0.00 0.00 32.24 2.43
278 279 5.665916 TGTCATGAATGTCTTGAGCTAGA 57.334 39.130 0.00 0.00 32.24 2.43
279 280 5.873712 ACTTGTCATGAATGTCTTGAGCTAG 59.126 40.000 0.00 0.00 32.24 3.42
280 281 5.798132 ACTTGTCATGAATGTCTTGAGCTA 58.202 37.500 0.00 0.00 32.24 3.32
281 282 4.649692 ACTTGTCATGAATGTCTTGAGCT 58.350 39.130 0.00 0.00 32.24 4.09
282 283 5.368256 AACTTGTCATGAATGTCTTGAGC 57.632 39.130 0.00 0.00 32.24 4.26
283 284 7.536622 GCTTAAACTTGTCATGAATGTCTTGAG 59.463 37.037 0.00 0.00 32.24 3.02
284 285 7.013178 TGCTTAAACTTGTCATGAATGTCTTGA 59.987 33.333 0.00 0.00 0.00 3.02
285 286 7.140705 TGCTTAAACTTGTCATGAATGTCTTG 58.859 34.615 0.00 0.00 0.00 3.02
286 287 7.275888 TGCTTAAACTTGTCATGAATGTCTT 57.724 32.000 0.00 0.00 0.00 3.01
287 288 6.882610 TGCTTAAACTTGTCATGAATGTCT 57.117 33.333 0.00 0.00 0.00 3.41
288 289 7.272084 GTGATGCTTAAACTTGTCATGAATGTC 59.728 37.037 0.00 0.00 0.00 3.06
289 290 7.086376 GTGATGCTTAAACTTGTCATGAATGT 58.914 34.615 0.00 0.00 0.00 2.71
290 291 6.529125 GGTGATGCTTAAACTTGTCATGAATG 59.471 38.462 0.00 0.00 0.00 2.67
291 292 6.623549 CGGTGATGCTTAAACTTGTCATGAAT 60.624 38.462 0.00 0.00 0.00 2.57
292 293 5.334802 CGGTGATGCTTAAACTTGTCATGAA 60.335 40.000 0.00 0.00 0.00 2.57
293 294 4.154015 CGGTGATGCTTAAACTTGTCATGA 59.846 41.667 0.00 0.00 0.00 3.07
294 295 4.406069 CGGTGATGCTTAAACTTGTCATG 58.594 43.478 0.00 0.00 0.00 3.07
295 296 3.440173 CCGGTGATGCTTAAACTTGTCAT 59.560 43.478 0.00 0.00 0.00 3.06
296 297 2.811431 CCGGTGATGCTTAAACTTGTCA 59.189 45.455 0.00 0.00 0.00 3.58
297 298 2.812011 ACCGGTGATGCTTAAACTTGTC 59.188 45.455 6.12 0.00 0.00 3.18
298 299 2.552315 CACCGGTGATGCTTAAACTTGT 59.448 45.455 31.31 0.00 0.00 3.16
299 300 2.552315 ACACCGGTGATGCTTAAACTTG 59.448 45.455 40.21 9.60 0.00 3.16
300 301 2.858745 ACACCGGTGATGCTTAAACTT 58.141 42.857 40.21 11.04 0.00 2.66
301 302 2.561478 ACACCGGTGATGCTTAAACT 57.439 45.000 40.21 11.62 0.00 2.66
302 303 4.957759 ATTACACCGGTGATGCTTAAAC 57.042 40.909 40.21 0.00 0.00 2.01
303 304 7.051623 AGATAATTACACCGGTGATGCTTAAA 58.948 34.615 40.21 20.13 0.00 1.52
304 305 6.588204 AGATAATTACACCGGTGATGCTTAA 58.412 36.000 40.21 26.13 0.00 1.85
305 306 6.169557 AGATAATTACACCGGTGATGCTTA 57.830 37.500 40.21 26.99 0.00 3.09
306 307 5.036117 AGATAATTACACCGGTGATGCTT 57.964 39.130 40.21 25.92 0.00 3.91
307 308 4.503296 GGAGATAATTACACCGGTGATGCT 60.503 45.833 40.21 23.79 0.00 3.79
308 309 3.746492 GGAGATAATTACACCGGTGATGC 59.254 47.826 40.21 19.94 0.00 3.91
309 310 4.040461 AGGGAGATAATTACACCGGTGATG 59.960 45.833 40.21 15.82 0.00 3.07
310 311 4.232091 AGGGAGATAATTACACCGGTGAT 58.768 43.478 40.21 25.27 0.00 3.06
311 312 3.649843 AGGGAGATAATTACACCGGTGA 58.350 45.455 40.21 20.46 0.00 4.02
312 313 4.127171 CAAGGGAGATAATTACACCGGTG 58.873 47.826 32.83 32.83 0.00 4.94
313 314 3.135895 CCAAGGGAGATAATTACACCGGT 59.864 47.826 0.00 0.00 0.00 5.28
314 315 3.740115 CCAAGGGAGATAATTACACCGG 58.260 50.000 0.00 0.00 0.00 5.28
315 316 3.139077 GCCAAGGGAGATAATTACACCG 58.861 50.000 0.00 0.00 0.00 4.94
316 317 3.117663 TGGCCAAGGGAGATAATTACACC 60.118 47.826 0.61 0.00 0.00 4.16
317 318 4.164843 TGGCCAAGGGAGATAATTACAC 57.835 45.455 0.61 0.00 0.00 2.90
318 319 4.871871 TTGGCCAAGGGAGATAATTACA 57.128 40.909 16.05 0.00 0.00 2.41
319 320 5.474876 CAGATTGGCCAAGGGAGATAATTAC 59.525 44.000 24.94 2.12 0.00 1.89
320 321 5.458069 CCAGATTGGCCAAGGGAGATAATTA 60.458 44.000 24.94 0.00 0.00 1.40
321 322 4.477249 CAGATTGGCCAAGGGAGATAATT 58.523 43.478 24.94 1.94 0.00 1.40
322 323 3.181425 CCAGATTGGCCAAGGGAGATAAT 60.181 47.826 24.94 2.80 0.00 1.28
323 324 2.175499 CCAGATTGGCCAAGGGAGATAA 59.825 50.000 24.94 0.00 0.00 1.75
324 325 1.776667 CCAGATTGGCCAAGGGAGATA 59.223 52.381 24.94 0.00 0.00 1.98
325 326 0.554792 CCAGATTGGCCAAGGGAGAT 59.445 55.000 24.94 5.37 0.00 2.75
326 327 0.549902 TCCAGATTGGCCAAGGGAGA 60.550 55.000 24.94 14.86 37.47 3.71
327 328 0.332632 TTCCAGATTGGCCAAGGGAG 59.667 55.000 26.14 15.93 37.47 4.30
328 329 0.039618 GTTCCAGATTGGCCAAGGGA 59.960 55.000 24.94 24.83 37.47 4.20
329 330 1.315257 CGTTCCAGATTGGCCAAGGG 61.315 60.000 24.94 23.05 37.47 3.95
330 331 1.315257 CCGTTCCAGATTGGCCAAGG 61.315 60.000 24.94 19.38 37.47 3.61
331 332 0.322456 TCCGTTCCAGATTGGCCAAG 60.322 55.000 24.94 10.32 37.47 3.61
332 333 0.322456 CTCCGTTCCAGATTGGCCAA 60.322 55.000 23.00 23.00 37.47 4.52
333 334 1.299648 CTCCGTTCCAGATTGGCCA 59.700 57.895 0.00 0.00 37.47 5.36
334 335 1.452108 CCTCCGTTCCAGATTGGCC 60.452 63.158 0.00 0.00 37.47 5.36
335 336 1.026718 CACCTCCGTTCCAGATTGGC 61.027 60.000 0.00 0.00 37.47 4.52
336 337 0.392998 CCACCTCCGTTCCAGATTGG 60.393 60.000 0.00 0.00 39.43 3.16
337 338 0.324943 ACCACCTCCGTTCCAGATTG 59.675 55.000 0.00 0.00 0.00 2.67
338 339 1.553704 GTACCACCTCCGTTCCAGATT 59.446 52.381 0.00 0.00 0.00 2.40
339 340 1.192428 GTACCACCTCCGTTCCAGAT 58.808 55.000 0.00 0.00 0.00 2.90
340 341 0.178955 TGTACCACCTCCGTTCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
341 342 0.682852 TTGTACCACCTCCGTTCCAG 59.317 55.000 0.00 0.00 0.00 3.86
342 343 1.129917 TTTGTACCACCTCCGTTCCA 58.870 50.000 0.00 0.00 0.00 3.53
343 344 2.259266 TTTTGTACCACCTCCGTTCC 57.741 50.000 0.00 0.00 0.00 3.62
361 362 5.306394 ACTAAGCTAGCGGAAGAACTTTTT 58.694 37.500 17.40 2.60 0.00 1.94
362 363 4.895961 ACTAAGCTAGCGGAAGAACTTTT 58.104 39.130 17.40 3.05 0.00 2.27
363 364 4.496360 GACTAAGCTAGCGGAAGAACTTT 58.504 43.478 17.40 3.69 0.00 2.66
364 365 3.119065 GGACTAAGCTAGCGGAAGAACTT 60.119 47.826 17.40 4.33 0.00 2.66
365 366 2.427812 GGACTAAGCTAGCGGAAGAACT 59.572 50.000 17.40 0.00 0.00 3.01
366 367 2.427812 AGGACTAAGCTAGCGGAAGAAC 59.572 50.000 17.40 10.78 0.00 3.01
367 368 2.688958 GAGGACTAAGCTAGCGGAAGAA 59.311 50.000 17.40 0.00 0.00 2.52
368 369 2.299521 GAGGACTAAGCTAGCGGAAGA 58.700 52.381 17.40 0.18 0.00 2.87
369 370 1.338655 GGAGGACTAAGCTAGCGGAAG 59.661 57.143 9.55 10.50 0.00 3.46
370 371 1.400737 GGAGGACTAAGCTAGCGGAA 58.599 55.000 9.55 0.00 0.00 4.30
371 372 0.467659 GGGAGGACTAAGCTAGCGGA 60.468 60.000 9.55 0.00 0.00 5.54
372 373 1.465200 GGGGAGGACTAAGCTAGCGG 61.465 65.000 9.55 6.47 0.00 5.52
373 374 1.797211 CGGGGAGGACTAAGCTAGCG 61.797 65.000 9.55 0.00 0.00 4.26
374 375 2.042800 CGGGGAGGACTAAGCTAGC 58.957 63.158 6.62 6.62 0.00 3.42
375 376 0.468400 AGCGGGGAGGACTAAGCTAG 60.468 60.000 0.00 0.00 32.73 3.42
376 377 0.032416 AAGCGGGGAGGACTAAGCTA 60.032 55.000 0.00 0.00 34.24 3.32
377 378 0.032416 TAAGCGGGGAGGACTAAGCT 60.032 55.000 0.00 0.00 36.40 3.74
378 379 1.001068 GATAAGCGGGGAGGACTAAGC 59.999 57.143 0.00 0.00 0.00 3.09
379 380 2.297597 CAGATAAGCGGGGAGGACTAAG 59.702 54.545 0.00 0.00 0.00 2.18
380 381 2.317040 CAGATAAGCGGGGAGGACTAA 58.683 52.381 0.00 0.00 0.00 2.24
386 387 4.881850 ACAAAAATACAGATAAGCGGGGAG 59.118 41.667 0.00 0.00 0.00 4.30
401 402 7.064229 ACTGGACAAAGGGAGTAACAAAAATA 58.936 34.615 0.00 0.00 0.00 1.40
402 403 5.897250 ACTGGACAAAGGGAGTAACAAAAAT 59.103 36.000 0.00 0.00 0.00 1.82
407 408 4.513406 AAACTGGACAAAGGGAGTAACA 57.487 40.909 0.00 0.00 0.00 2.41
417 419 6.576662 TTCGGCATAATAAAACTGGACAAA 57.423 33.333 0.00 0.00 0.00 2.83
510 513 5.978919 TGCATTCAAAAGAGAATTCACACAC 59.021 36.000 8.44 0.00 36.13 3.82
570 575 9.143631 TCATCTATATAACTCAATCGCATTGTG 57.856 33.333 8.19 8.32 41.02 3.33
623 631 3.370103 CCCTCGTCAAGGTTTATTAGCCA 60.370 47.826 0.00 0.00 44.56 4.75
650 658 0.855349 GATCATGTCGGCTACTTGCG 59.145 55.000 0.00 0.00 44.05 4.85
663 686 5.651530 ACTTGTAACTCGGTGTAGATCATG 58.348 41.667 0.00 0.00 0.00 3.07
664 687 5.163540 GGACTTGTAACTCGGTGTAGATCAT 60.164 44.000 0.00 0.00 0.00 2.45
665 688 4.157289 GGACTTGTAACTCGGTGTAGATCA 59.843 45.833 0.00 0.00 0.00 2.92
666 689 4.157289 TGGACTTGTAACTCGGTGTAGATC 59.843 45.833 0.00 0.00 0.00 2.75
667 690 4.084287 TGGACTTGTAACTCGGTGTAGAT 58.916 43.478 0.00 0.00 0.00 1.98
668 691 3.489355 TGGACTTGTAACTCGGTGTAGA 58.511 45.455 0.00 0.00 0.00 2.59
669 692 3.928727 TGGACTTGTAACTCGGTGTAG 57.071 47.619 0.00 0.00 0.00 2.74
670 693 3.119743 CGATGGACTTGTAACTCGGTGTA 60.120 47.826 0.00 0.00 0.00 2.90
671 694 2.352421 CGATGGACTTGTAACTCGGTGT 60.352 50.000 0.00 0.00 0.00 4.16
672 695 2.094906 TCGATGGACTTGTAACTCGGTG 60.095 50.000 0.00 0.00 0.00 4.94
673 696 2.094854 GTCGATGGACTTGTAACTCGGT 60.095 50.000 0.00 0.00 40.15 4.69
674 697 2.527100 GTCGATGGACTTGTAACTCGG 58.473 52.381 0.00 0.00 40.15 4.63
675 698 2.527100 GGTCGATGGACTTGTAACTCG 58.473 52.381 7.84 0.00 42.97 4.18
676 699 2.496470 AGGGTCGATGGACTTGTAACTC 59.504 50.000 7.84 0.00 42.97 3.01
677 700 2.537143 AGGGTCGATGGACTTGTAACT 58.463 47.619 7.84 0.00 42.97 2.24
678 701 3.000727 CAAGGGTCGATGGACTTGTAAC 58.999 50.000 7.84 0.00 42.97 2.50
679 702 2.901192 TCAAGGGTCGATGGACTTGTAA 59.099 45.455 7.84 2.07 42.97 2.41
684 707 2.093447 GTGATTCAAGGGTCGATGGACT 60.093 50.000 7.84 0.00 42.97 3.85
940 968 6.493166 AGATCTATCACTAGAGAAGATGGGG 58.507 44.000 14.64 3.22 37.41 4.96
973 1001 2.743636 TGCATAACGCTAGGCCTATC 57.256 50.000 14.30 8.46 43.06 2.08
981 1009 5.631929 CGGTATGAGTATTTGCATAACGCTA 59.368 40.000 7.26 0.00 46.78 4.26
1003 1032 1.937108 GCTCACTCTGAACTTGACCGG 60.937 57.143 0.00 0.00 0.00 5.28
1005 1034 2.682836 GAGCTCACTCTGAACTTGACC 58.317 52.381 9.40 0.00 40.03 4.02
1020 1049 2.863137 CAGCTAAATGAACCTCGAGCTC 59.137 50.000 6.99 2.73 38.18 4.09
1031 1060 5.237815 CAACACTACTCACCAGCTAAATGA 58.762 41.667 0.00 0.00 0.00 2.57
1079 1114 6.949352 ACTTATTGACAGAAAGCATATGGG 57.051 37.500 4.56 0.00 0.00 4.00
1124 1159 2.041206 GATAACCCCGGCCTCTCCAC 62.041 65.000 0.00 0.00 34.01 4.02
1127 1162 1.459730 AGGATAACCCCGGCCTCTC 60.460 63.158 0.00 0.00 36.73 3.20
1170 1205 8.559536 ACTACGGATCAAAATAACATAATGCTG 58.440 33.333 0.00 0.00 0.00 4.41
1266 1303 9.322773 TGCAAACAATTGATCAAAATAGTTCAA 57.677 25.926 13.09 2.66 38.94 2.69
1365 1402 3.056107 CGATTGACTTTCCCACTACCTCA 60.056 47.826 0.00 0.00 0.00 3.86
1383 1420 0.325671 TCTCCTTGGCCTCCTCGATT 60.326 55.000 3.32 0.00 0.00 3.34
1454 1491 1.945354 GAAGTCGAGGGTCATCGCCA 61.945 60.000 0.00 0.00 42.43 5.69
1509 1546 1.616628 AATGGAAGGGGAGGTCGCT 60.617 57.895 0.00 0.00 40.66 4.93
1516 1553 1.377690 TGCTAACCAATGGAAGGGGA 58.622 50.000 6.16 0.00 0.00 4.81
1602 1639 6.347725 GGTCAGCGTGTATTTATTCATCCATC 60.348 42.308 0.00 0.00 0.00 3.51
1652 1689 4.447138 AACTGGTCAAGTCCATTTACCA 57.553 40.909 0.00 0.00 38.56 3.25
1694 1731 2.888834 AACACATGAACAACAAGCCC 57.111 45.000 0.00 0.00 0.00 5.19
1809 1848 8.294954 TCTTCTCTAAGTAGATTAAGGTGTGG 57.705 38.462 9.19 0.00 34.13 4.17
1867 1906 4.097892 AGAAGTTTGTCCAAAGCACGAAAT 59.902 37.500 0.00 0.00 0.00 2.17
2137 2182 6.070653 TGGGGAAAATTAGTCTTAAGCGAGTA 60.071 38.462 0.00 0.00 0.00 2.59
2138 2183 5.183969 GGGGAAAATTAGTCTTAAGCGAGT 58.816 41.667 0.00 0.00 0.00 4.18
2153 2198 0.996583 TAGCGGAAGGTGGGGAAAAT 59.003 50.000 0.00 0.00 44.53 1.82
2154 2199 0.037160 GTAGCGGAAGGTGGGGAAAA 59.963 55.000 0.00 0.00 44.53 2.29
2171 2216 2.767536 GCGAGCATTGCCTTGAGTA 58.232 52.632 4.70 0.00 40.55 2.59
2184 2229 2.607635 TCGATAAAATTCACCAGCGAGC 59.392 45.455 0.00 0.00 0.00 5.03
2185 2230 3.865745 AGTCGATAAAATTCACCAGCGAG 59.134 43.478 0.00 0.00 0.00 5.03
2186 2231 3.857052 AGTCGATAAAATTCACCAGCGA 58.143 40.909 0.00 0.00 0.00 4.93
2187 2232 4.804139 AGTAGTCGATAAAATTCACCAGCG 59.196 41.667 0.00 0.00 0.00 5.18
2238 2283 3.136626 AGAGAAGCACAAGGGTGTTAGTT 59.863 43.478 0.00 0.00 46.95 2.24
2239 2284 2.706190 AGAGAAGCACAAGGGTGTTAGT 59.294 45.455 0.00 0.00 46.95 2.24
2240 2285 3.244215 TGAGAGAAGCACAAGGGTGTTAG 60.244 47.826 0.00 0.00 46.95 2.34
2241 2286 2.703536 TGAGAGAAGCACAAGGGTGTTA 59.296 45.455 0.00 0.00 46.95 2.41
2375 2439 2.432628 CTGCCGAACCAGACGTCC 60.433 66.667 13.01 0.00 34.77 4.79
2417 4409 2.049156 CTTGCGCGTGAGGTCTCA 60.049 61.111 8.43 0.00 37.24 3.27
2418 4410 3.482783 GCTTGCGCGTGAGGTCTC 61.483 66.667 8.43 0.00 0.00 3.36
2453 4445 1.134788 CCTAAGGAAACGACCGAGCAT 60.135 52.381 0.00 0.00 34.73 3.79
2550 4549 5.643379 TTTAATCACCAATTCTGGACAGC 57.357 39.130 0.00 0.00 46.92 4.40
2551 4550 8.306038 TCAATTTTAATCACCAATTCTGGACAG 58.694 33.333 0.00 0.00 46.92 3.51
2579 4579 1.879380 CGAGCAATCCCAAGTTCACAA 59.121 47.619 0.00 0.00 0.00 3.33
2627 4627 9.515226 TTAAGACAAGCCTAATTAAATCTGTGT 57.485 29.630 0.00 0.00 0.00 3.72
2655 4655 2.304761 TGTGAAGTTCCATCCAGGGTAC 59.695 50.000 0.00 0.00 38.24 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.