Multiple sequence alignment - TraesCS1B01G034000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G034000 chr1B 100.000 2237 0 0 1 2237 16464496 16466732 0.000000e+00 4132
1 TraesCS1B01G034000 chr1B 94.059 202 12 0 2030 2231 16477404 16477605 7.760000e-80 307
2 TraesCS1B01G034000 chr1B 77.447 470 84 16 16 476 23839699 23840155 6.130000e-66 261
3 TraesCS1B01G034000 chr1A 89.815 1404 95 19 1 1379 22657967 22656587 0.000000e+00 1757
4 TraesCS1B01G034000 chr1A 77.258 598 82 36 62 647 22661728 22661173 3.610000e-78 302
5 TraesCS1B01G034000 chr1D 87.753 939 68 16 464 1376 10986252 10987169 0.000000e+00 1053
6 TraesCS1B01G034000 chr1D 86.538 676 70 15 1367 2029 10987195 10987862 0.000000e+00 725
7 TraesCS1B01G034000 chr1D 81.986 433 53 9 14 441 10963493 10963905 5.910000e-91 344
8 TraesCS1B01G034000 chr7D 95.050 202 10 0 2030 2231 637756090 637756291 3.580000e-83 318


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G034000 chr1B 16464496 16466732 2236 False 4132.0 4132 100.0000 1 2237 1 chr1B.!!$F1 2236
1 TraesCS1B01G034000 chr1A 22656587 22661728 5141 True 1029.5 1757 83.5365 1 1379 2 chr1A.!!$R1 1378
2 TraesCS1B01G034000 chr1D 10986252 10987862 1610 False 889.0 1053 87.1455 464 2029 2 chr1D.!!$F2 1565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 4146 0.179045 GGCACACACTCACCAGAAGT 60.179 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 6040 0.175989 GGAAGCGTTCCTACTCCCAG 59.824 60.0 8.87 0.0 46.57 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 3812 1.375523 GTAGGGGTGTCGGCAACAG 60.376 63.158 7.66 0.00 38.97 3.16
54 3816 3.712881 GGTGTCGGCAACAGCGAC 61.713 66.667 0.00 0.00 45.61 5.19
91 3853 1.608154 GGGCCTTAAGTCCTGGGTC 59.392 63.158 0.84 0.00 0.00 4.46
95 3857 0.618981 CCTTAAGTCCTGGGTCACCC 59.381 60.000 5.63 5.63 45.71 4.61
107 3869 2.094659 GTCACCCACGCATCGACTG 61.095 63.158 0.00 0.00 0.00 3.51
169 3931 1.434188 TCTCCTTGGCCTTCTCAACA 58.566 50.000 3.32 0.00 0.00 3.33
189 3951 2.005960 GACATCCCGACGACCTCTGG 62.006 65.000 0.00 0.00 0.00 3.86
193 3955 4.436998 CCGACGACCTCTGGCCAC 62.437 72.222 0.00 0.00 0.00 5.01
248 4010 5.643560 TCCTGCAGGTTCTGGAAACTTCC 62.644 52.174 31.58 1.23 35.91 3.46
301 4063 8.728337 TCTTCAATGAACTATTGGATCAAGAG 57.272 34.615 0.00 1.34 45.05 2.85
304 4066 9.519191 TTCAATGAACTATTGGATCAAGAGAAA 57.481 29.630 8.94 0.00 45.05 2.52
305 4067 9.690913 TCAATGAACTATTGGATCAAGAGAAAT 57.309 29.630 8.94 0.00 45.05 2.17
310 4072 9.943163 GAACTATTGGATCAAGAGAAATAAAGC 57.057 33.333 8.94 0.00 36.36 3.51
311 4073 8.147642 ACTATTGGATCAAGAGAAATAAAGCG 57.852 34.615 8.94 0.00 36.36 4.68
312 4074 5.818136 TTGGATCAAGAGAAATAAAGCGG 57.182 39.130 0.00 0.00 0.00 5.52
313 4075 4.843728 TGGATCAAGAGAAATAAAGCGGT 58.156 39.130 0.00 0.00 0.00 5.68
314 4076 5.984725 TGGATCAAGAGAAATAAAGCGGTA 58.015 37.500 0.00 0.00 0.00 4.02
315 4077 6.411376 TGGATCAAGAGAAATAAAGCGGTAA 58.589 36.000 0.00 0.00 0.00 2.85
316 4078 6.538742 TGGATCAAGAGAAATAAAGCGGTAAG 59.461 38.462 0.00 0.00 0.00 2.34
348 4110 2.291800 ACCATGAGGGAAAATGGGTGAG 60.292 50.000 6.63 0.00 46.45 3.51
384 4146 0.179045 GGCACACACTCACCAGAAGT 60.179 55.000 0.00 0.00 0.00 3.01
388 4150 3.384668 CACACACTCACCAGAAGTACTG 58.615 50.000 0.00 0.00 45.36 2.74
612 4374 3.710326 TCCATCACGAAATCTAGTCCG 57.290 47.619 0.00 0.00 0.00 4.79
729 4516 5.281193 CCCTATAAGTACCCATCCATGCAAT 60.281 44.000 0.00 0.00 0.00 3.56
730 4517 6.248433 CCTATAAGTACCCATCCATGCAATT 58.752 40.000 0.00 0.00 0.00 2.32
731 4518 6.151648 CCTATAAGTACCCATCCATGCAATTG 59.848 42.308 0.00 0.00 0.00 2.32
732 4519 2.034124 AGTACCCATCCATGCAATTGC 58.966 47.619 23.69 23.69 42.50 3.56
750 4537 2.674954 TGCAATGTGTTTATGCAGCAC 58.325 42.857 0.00 0.00 44.52 4.40
758 4545 4.023279 TGTGTTTATGCAGCACCAAGTTAG 60.023 41.667 0.00 0.00 32.62 2.34
765 4552 1.267806 CAGCACCAAGTTAGCAACCAG 59.732 52.381 0.00 0.00 0.00 4.00
802 4589 2.262423 ACAAGCTTCTTGAGGTCCAC 57.738 50.000 12.89 0.00 34.30 4.02
955 4745 6.824704 GCTACTTTCTCTCTAAGACTGACCTA 59.175 42.308 0.00 0.00 32.27 3.08
974 4764 5.769367 ACCTATTTCTCGCTTTTGGAAAAC 58.231 37.500 0.00 0.00 33.58 2.43
996 4786 2.213499 GATTTGTAGGCTGGTCCATCG 58.787 52.381 0.00 0.00 37.29 3.84
1010 4800 0.316522 CCATCGACGATGAGCTCCAT 59.683 55.000 33.73 4.76 42.09 3.41
1011 4801 1.416373 CATCGACGATGAGCTCCATG 58.584 55.000 29.63 3.44 42.09 3.66
1014 4804 0.318529 CGACGATGAGCTCCATGGAG 60.319 60.000 33.73 33.73 44.56 3.86
1029 4819 1.966451 GGAGGTTCCAGTTGGCACG 60.966 63.158 0.00 0.00 36.28 5.34
1031 4821 2.983592 GGTTCCAGTTGGCACGGG 60.984 66.667 0.00 0.00 39.53 5.28
1032 4822 2.112297 GTTCCAGTTGGCACGGGA 59.888 61.111 0.00 5.22 44.75 5.14
1034 4824 2.144078 TTCCAGTTGGCACGGGAGA 61.144 57.895 0.00 0.79 46.63 3.71
1137 4927 4.388499 AAGCCCGACGCCGACATT 62.388 61.111 0.00 0.00 38.78 2.71
1152 4942 2.033141 ATTGTCGTGCTGCCAGCT 59.967 55.556 18.96 0.00 42.97 4.24
1158 4948 4.648626 GTGCTGCCAGCTGGGTCA 62.649 66.667 33.46 22.13 42.97 4.02
1208 4998 1.409412 GTGCGCATCTTCGTCGATAT 58.591 50.000 15.91 0.00 0.00 1.63
1230 5020 2.110213 GCCGACACACCCTTCACA 59.890 61.111 0.00 0.00 0.00 3.58
1259 5049 2.699576 TAGCTATGCAGGCGCGAAGG 62.700 60.000 12.10 0.00 42.97 3.46
1278 5068 0.311790 GAATGTATGCGTGCCCCATG 59.688 55.000 0.00 0.00 0.00 3.66
1303 5093 5.871465 TGCACGCTCATGAATAAGTTTTA 57.129 34.783 0.00 0.00 0.00 1.52
1310 5100 9.988350 ACGCTCATGAATAAGTTTTAAGTAATG 57.012 29.630 0.00 0.00 0.00 1.90
1355 5145 0.104120 CATCAGCATGCCATGGGTTG 59.896 55.000 15.66 4.09 34.76 3.77
1376 5166 3.309410 TGGTGTAACTTTTCGTTTCGTCC 59.691 43.478 0.00 0.00 37.05 4.79
1389 5214 4.022935 TCGTTTCGTCCACTTATGTGTACT 60.023 41.667 7.86 0.00 42.34 2.73
1401 5226 6.632834 CACTTATGTGTACTTTGTTTGTGCTC 59.367 38.462 0.62 0.00 39.24 4.26
1409 5234 4.523083 ACTTTGTTTGTGCTCTGGACTAA 58.477 39.130 0.00 0.00 0.00 2.24
1426 5251 5.473504 TGGACTAATTCCTGTTTGAAAGAGC 59.526 40.000 0.00 0.00 46.10 4.09
1429 5254 4.590850 AATTCCTGTTTGAAAGAGCACC 57.409 40.909 0.00 0.00 0.00 5.01
1439 5264 3.476552 TGAAAGAGCACCAGGTTTGTAG 58.523 45.455 0.00 0.00 0.00 2.74
1440 5265 3.118038 TGAAAGAGCACCAGGTTTGTAGT 60.118 43.478 0.00 0.00 0.00 2.73
1441 5266 4.101898 TGAAAGAGCACCAGGTTTGTAGTA 59.898 41.667 0.00 0.00 0.00 1.82
1442 5267 4.910458 AAGAGCACCAGGTTTGTAGTAT 57.090 40.909 0.00 0.00 0.00 2.12
1445 5274 4.532521 AGAGCACCAGGTTTGTAGTATCTT 59.467 41.667 0.00 0.00 0.00 2.40
1473 5302 6.855763 TCCACAAAATTAGAGATTGGCATT 57.144 33.333 0.00 0.00 0.00 3.56
1474 5303 6.632909 TCCACAAAATTAGAGATTGGCATTG 58.367 36.000 0.00 0.00 0.00 2.82
1495 5324 2.007547 GCCTTCCTAGTCTTTCCACGC 61.008 57.143 0.00 0.00 0.00 5.34
1520 5349 4.336713 GCAGTCCATTTGGTATCCTCTTTC 59.663 45.833 0.00 0.00 36.34 2.62
1550 5379 1.084289 GTTCCTGTACGAACCATGCC 58.916 55.000 0.00 0.00 36.87 4.40
1565 5394 1.315257 ATGCCTGCGTTCATGTTCCC 61.315 55.000 0.00 0.00 0.00 3.97
1585 5414 4.527816 TCCCTTTGATTCTTCCAAACATGG 59.472 41.667 0.00 0.00 31.13 3.66
1591 5420 2.099141 TCTTCCAAACATGGAGAGCG 57.901 50.000 0.00 0.00 39.43 5.03
1604 5433 4.391405 TGGAGAGCGCCATATATACATG 57.609 45.455 2.29 0.00 31.66 3.21
1624 5453 5.010012 ACATGGATGAAAGTCAGTTCCAAAC 59.990 40.000 5.02 0.00 38.58 2.93
1626 5455 5.200483 TGGATGAAAGTCAGTTCCAAACTT 58.800 37.500 0.00 0.00 40.46 2.66
1627 5456 5.067674 TGGATGAAAGTCAGTTCCAAACTTG 59.932 40.000 0.00 0.00 40.46 3.16
1633 5471 3.809832 AGTCAGTTCCAAACTTGTCATCG 59.190 43.478 0.00 0.00 40.46 3.84
1637 5475 4.035091 CAGTTCCAAACTTGTCATCGTCAA 59.965 41.667 0.00 0.00 40.46 3.18
1650 5488 7.117241 TGTCATCGTCAATGAGTTTTAGTTC 57.883 36.000 0.00 0.00 45.06 3.01
1656 5494 2.124277 ATGAGTTTTAGTTCCCCGCC 57.876 50.000 0.00 0.00 0.00 6.13
1657 5495 0.766131 TGAGTTTTAGTTCCCCGCCA 59.234 50.000 0.00 0.00 0.00 5.69
1660 5498 2.624364 GAGTTTTAGTTCCCCGCCAAAA 59.376 45.455 0.00 0.00 0.00 2.44
1664 5502 3.669251 TTAGTTCCCCGCCAAAATTTG 57.331 42.857 0.00 0.00 0.00 2.32
1668 5506 1.414158 TCCCCGCCAAAATTTGTCAA 58.586 45.000 4.92 0.00 0.00 3.18
1694 5532 8.087982 TGAAACCATTTAGATCGAATATCAGC 57.912 34.615 0.00 0.00 0.00 4.26
1711 5549 4.689612 TCAGCTTTTACAGTTGGTCTCT 57.310 40.909 0.00 0.00 34.50 3.10
1729 5567 1.202417 TCTTGCGACCGGATCTTCATC 60.202 52.381 9.46 0.00 0.00 2.92
1730 5568 0.534873 TTGCGACCGGATCTTCATCA 59.465 50.000 9.46 0.00 0.00 3.07
1733 5571 1.471676 GCGACCGGATCTTCATCACTT 60.472 52.381 9.46 0.00 0.00 3.16
1735 5573 2.860735 CGACCGGATCTTCATCACTTTC 59.139 50.000 9.46 0.00 0.00 2.62
1748 5586 5.610398 TCATCACTTTCAAGTTGCTAGTGA 58.390 37.500 27.36 27.36 46.33 3.41
1756 5594 7.715249 ACTTTCAAGTTGCTAGTGATGAACTAA 59.285 33.333 8.38 0.00 37.11 2.24
1759 5597 6.646653 TCAAGTTGCTAGTGATGAACTAACTG 59.353 38.462 0.00 0.00 40.92 3.16
1763 5601 6.599356 TGCTAGTGATGAACTAACTGGTTA 57.401 37.500 0.00 0.00 40.92 2.85
1828 5666 2.292267 CCTCTAATGAAGCCGCACATT 58.708 47.619 16.12 16.12 39.53 2.71
1832 5670 5.349817 CCTCTAATGAAGCCGCACATTATAG 59.650 44.000 17.24 17.68 37.99 1.31
1838 5676 5.424757 TGAAGCCGCACATTATAGTACTTT 58.575 37.500 0.00 0.00 0.00 2.66
1882 5720 8.145767 TCAATCTTTCATTTCTTGATTGCACTT 58.854 29.630 0.00 0.00 41.90 3.16
1903 5741 5.540337 ACTTGACAACTCATCTCTGGACTTA 59.460 40.000 0.00 0.00 0.00 2.24
1912 5750 6.326064 ACTCATCTCTGGACTTACATAGCAAT 59.674 38.462 0.00 0.00 0.00 3.56
1917 5755 5.674525 TCTGGACTTACATAGCAATTCCTG 58.325 41.667 0.00 0.00 0.00 3.86
1922 5760 7.615365 TGGACTTACATAGCAATTCCTGAAAAT 59.385 33.333 0.00 0.00 0.00 1.82
1931 5769 7.288810 AGCAATTCCTGAAAATTGAAGTACA 57.711 32.000 12.26 0.00 45.40 2.90
1941 5779 6.957020 TGAAAATTGAAGTACATAATGGGGGT 59.043 34.615 0.00 0.00 0.00 4.95
1948 5786 4.292643 AGTACATAATGGGGGTTCGTACT 58.707 43.478 0.00 0.00 34.70 2.73
1963 5801 6.036844 GGGTTCGTACTTCACTAAATGGATTC 59.963 42.308 0.00 0.00 0.00 2.52
1988 5826 9.990868 TCCATAAAGATATATACTGCCACTAGA 57.009 33.333 0.00 0.00 0.00 2.43
2003 5841 5.067674 TGCCACTAGATAAACATTCATTGCC 59.932 40.000 0.00 0.00 0.00 4.52
2019 5857 8.948145 CATTCATTGCCATGGAATTCTTAAAAA 58.052 29.630 18.40 0.00 0.00 1.94
2029 5867 9.044150 CATGGAATTCTTAAAAACACACACATT 57.956 29.630 5.23 0.00 0.00 2.71
2030 5868 8.417780 TGGAATTCTTAAAAACACACACATTG 57.582 30.769 5.23 0.00 0.00 2.82
2031 5869 8.037758 TGGAATTCTTAAAAACACACACATTGT 58.962 29.630 5.23 0.00 39.97 2.71
2032 5870 8.878769 GGAATTCTTAAAAACACACACATTGTT 58.121 29.630 5.23 0.00 38.88 2.83
2036 5874 9.562583 TTCTTAAAAACACACACATTGTTAGAC 57.437 29.630 0.00 0.00 36.13 2.59
2037 5875 7.906010 TCTTAAAAACACACACATTGTTAGACG 59.094 33.333 0.00 0.00 36.13 4.18
2038 5876 5.554822 AAAACACACACATTGTTAGACGT 57.445 34.783 0.00 0.00 36.13 4.34
2039 5877 6.665474 AAAACACACACATTGTTAGACGTA 57.335 33.333 0.00 0.00 36.13 3.57
2040 5878 6.854496 AAACACACACATTGTTAGACGTAT 57.146 33.333 0.00 0.00 36.13 3.06
2041 5879 6.854496 AACACACACATTGTTAGACGTATT 57.146 33.333 0.00 0.00 35.67 1.89
2042 5880 6.223138 ACACACACATTGTTAGACGTATTG 57.777 37.500 0.00 0.00 35.67 1.90
2043 5881 5.178623 ACACACACATTGTTAGACGTATTGG 59.821 40.000 0.00 0.00 35.67 3.16
2044 5882 5.178623 CACACACATTGTTAGACGTATTGGT 59.821 40.000 0.00 0.00 35.67 3.67
2045 5883 5.761234 ACACACATTGTTAGACGTATTGGTT 59.239 36.000 0.00 0.00 33.09 3.67
2046 5884 6.073440 ACACACATTGTTAGACGTATTGGTTC 60.073 38.462 0.00 0.00 33.09 3.62
2047 5885 6.147164 CACACATTGTTAGACGTATTGGTTCT 59.853 38.462 0.00 0.00 0.00 3.01
2048 5886 6.147164 ACACATTGTTAGACGTATTGGTTCTG 59.853 38.462 0.00 0.00 0.00 3.02
2049 5887 6.147164 CACATTGTTAGACGTATTGGTTCTGT 59.853 38.462 0.00 0.00 0.00 3.41
2050 5888 7.329962 CACATTGTTAGACGTATTGGTTCTGTA 59.670 37.037 0.00 0.00 0.00 2.74
2051 5889 7.330208 ACATTGTTAGACGTATTGGTTCTGTAC 59.670 37.037 0.00 0.00 0.00 2.90
2052 5890 6.579666 TGTTAGACGTATTGGTTCTGTACT 57.420 37.500 0.00 0.00 0.00 2.73
2053 5891 6.615088 TGTTAGACGTATTGGTTCTGTACTC 58.385 40.000 0.00 0.00 0.00 2.59
2054 5892 6.432162 TGTTAGACGTATTGGTTCTGTACTCT 59.568 38.462 0.00 0.00 0.00 3.24
2055 5893 7.607607 TGTTAGACGTATTGGTTCTGTACTCTA 59.392 37.037 0.00 0.00 0.00 2.43
2056 5894 8.619546 GTTAGACGTATTGGTTCTGTACTCTAT 58.380 37.037 0.00 0.00 0.00 1.98
2057 5895 7.642082 AGACGTATTGGTTCTGTACTCTATT 57.358 36.000 0.00 0.00 0.00 1.73
2058 5896 8.743085 AGACGTATTGGTTCTGTACTCTATTA 57.257 34.615 0.00 0.00 0.00 0.98
2059 5897 9.182214 AGACGTATTGGTTCTGTACTCTATTAA 57.818 33.333 0.00 0.00 0.00 1.40
2060 5898 9.962783 GACGTATTGGTTCTGTACTCTATTAAT 57.037 33.333 0.00 0.00 0.00 1.40
2066 5904 9.483489 TTGGTTCTGTACTCTATTAATACTCCA 57.517 33.333 0.00 0.00 0.00 3.86
2067 5905 9.656323 TGGTTCTGTACTCTATTAATACTCCAT 57.344 33.333 0.00 0.00 0.00 3.41
2068 5906 9.915629 GGTTCTGTACTCTATTAATACTCCATG 57.084 37.037 0.00 0.00 0.00 3.66
2082 5920 4.762289 ACTCCATGTAATCTCAACCTCC 57.238 45.455 0.00 0.00 0.00 4.30
2083 5921 4.366267 ACTCCATGTAATCTCAACCTCCT 58.634 43.478 0.00 0.00 0.00 3.69
2084 5922 4.785376 ACTCCATGTAATCTCAACCTCCTT 59.215 41.667 0.00 0.00 0.00 3.36
2085 5923 5.104735 ACTCCATGTAATCTCAACCTCCTTC 60.105 44.000 0.00 0.00 0.00 3.46
2086 5924 5.032846 TCCATGTAATCTCAACCTCCTTCT 58.967 41.667 0.00 0.00 0.00 2.85
2087 5925 5.104776 TCCATGTAATCTCAACCTCCTTCTG 60.105 44.000 0.00 0.00 0.00 3.02
2088 5926 5.338708 CCATGTAATCTCAACCTCCTTCTGT 60.339 44.000 0.00 0.00 0.00 3.41
2089 5927 6.127054 CCATGTAATCTCAACCTCCTTCTGTA 60.127 42.308 0.00 0.00 0.00 2.74
2090 5928 7.419518 CCATGTAATCTCAACCTCCTTCTGTAT 60.420 40.741 0.00 0.00 0.00 2.29
2091 5929 7.113658 TGTAATCTCAACCTCCTTCTGTATC 57.886 40.000 0.00 0.00 0.00 2.24
2092 5930 6.897966 TGTAATCTCAACCTCCTTCTGTATCT 59.102 38.462 0.00 0.00 0.00 1.98
2093 5931 6.478512 AATCTCAACCTCCTTCTGTATCTC 57.521 41.667 0.00 0.00 0.00 2.75
2094 5932 5.199982 TCTCAACCTCCTTCTGTATCTCT 57.800 43.478 0.00 0.00 0.00 3.10
2095 5933 5.584913 TCTCAACCTCCTTCTGTATCTCTT 58.415 41.667 0.00 0.00 0.00 2.85
2096 5934 6.019748 TCTCAACCTCCTTCTGTATCTCTTT 58.980 40.000 0.00 0.00 0.00 2.52
2097 5935 7.182760 TCTCAACCTCCTTCTGTATCTCTTTA 58.817 38.462 0.00 0.00 0.00 1.85
2098 5936 7.674348 TCTCAACCTCCTTCTGTATCTCTTTAA 59.326 37.037 0.00 0.00 0.00 1.52
2099 5937 8.202461 TCAACCTCCTTCTGTATCTCTTTAAA 57.798 34.615 0.00 0.00 0.00 1.52
2100 5938 8.656806 TCAACCTCCTTCTGTATCTCTTTAAAA 58.343 33.333 0.00 0.00 0.00 1.52
2101 5939 8.722394 CAACCTCCTTCTGTATCTCTTTAAAAC 58.278 37.037 0.00 0.00 0.00 2.43
2102 5940 8.208575 ACCTCCTTCTGTATCTCTTTAAAACT 57.791 34.615 0.00 0.00 0.00 2.66
2103 5941 8.315482 ACCTCCTTCTGTATCTCTTTAAAACTC 58.685 37.037 0.00 0.00 0.00 3.01
2104 5942 8.536175 CCTCCTTCTGTATCTCTTTAAAACTCT 58.464 37.037 0.00 0.00 0.00 3.24
2105 5943 9.936759 CTCCTTCTGTATCTCTTTAAAACTCTT 57.063 33.333 0.00 0.00 0.00 2.85
2106 5944 9.712305 TCCTTCTGTATCTCTTTAAAACTCTTG 57.288 33.333 0.00 0.00 0.00 3.02
2107 5945 8.447053 CCTTCTGTATCTCTTTAAAACTCTTGC 58.553 37.037 0.00 0.00 0.00 4.01
2108 5946 7.907214 TCTGTATCTCTTTAAAACTCTTGCC 57.093 36.000 0.00 0.00 0.00 4.52
2109 5947 7.680730 TCTGTATCTCTTTAAAACTCTTGCCT 58.319 34.615 0.00 0.00 0.00 4.75
2110 5948 8.812972 TCTGTATCTCTTTAAAACTCTTGCCTA 58.187 33.333 0.00 0.00 0.00 3.93
2111 5949 9.092876 CTGTATCTCTTTAAAACTCTTGCCTAG 57.907 37.037 0.00 0.00 0.00 3.02
2112 5950 6.993786 ATCTCTTTAAAACTCTTGCCTAGC 57.006 37.500 0.00 0.00 0.00 3.42
2113 5951 5.246307 TCTCTTTAAAACTCTTGCCTAGCC 58.754 41.667 0.00 0.00 0.00 3.93
2114 5952 5.013183 TCTCTTTAAAACTCTTGCCTAGCCT 59.987 40.000 0.00 0.00 0.00 4.58
2115 5953 5.003804 TCTTTAAAACTCTTGCCTAGCCTG 58.996 41.667 0.00 0.00 0.00 4.85
2116 5954 4.634012 TTAAAACTCTTGCCTAGCCTGA 57.366 40.909 0.00 0.00 0.00 3.86
2117 5955 3.728385 AAAACTCTTGCCTAGCCTGAT 57.272 42.857 0.00 0.00 0.00 2.90
2118 5956 2.998316 AACTCTTGCCTAGCCTGATC 57.002 50.000 0.00 0.00 0.00 2.92
2119 5957 1.871418 ACTCTTGCCTAGCCTGATCA 58.129 50.000 0.00 0.00 0.00 2.92
2120 5958 1.761784 ACTCTTGCCTAGCCTGATCAG 59.238 52.381 16.24 16.24 0.00 2.90
2121 5959 2.037901 CTCTTGCCTAGCCTGATCAGA 58.962 52.381 24.62 3.20 0.00 3.27
2122 5960 2.633967 CTCTTGCCTAGCCTGATCAGAT 59.366 50.000 24.62 14.20 0.00 2.90
2123 5961 2.632028 TCTTGCCTAGCCTGATCAGATC 59.368 50.000 24.62 14.60 0.00 2.75
2124 5962 2.092598 TGCCTAGCCTGATCAGATCA 57.907 50.000 24.62 12.74 37.76 2.92
2125 5963 2.401568 TGCCTAGCCTGATCAGATCAA 58.598 47.619 24.62 5.66 39.11 2.57
2126 5964 2.367894 TGCCTAGCCTGATCAGATCAAG 59.632 50.000 24.62 14.21 39.11 3.02
2127 5965 2.632028 GCCTAGCCTGATCAGATCAAGA 59.368 50.000 24.62 2.34 39.11 3.02
2128 5966 3.070734 GCCTAGCCTGATCAGATCAAGAA 59.929 47.826 24.62 1.54 39.11 2.52
2129 5967 4.262981 GCCTAGCCTGATCAGATCAAGAAT 60.263 45.833 24.62 3.94 39.11 2.40
2130 5968 5.481105 CCTAGCCTGATCAGATCAAGAATC 58.519 45.833 24.62 2.57 39.11 2.52
2131 5969 3.992643 AGCCTGATCAGATCAAGAATCG 58.007 45.455 24.62 4.19 39.11 3.34
2132 5970 3.640498 AGCCTGATCAGATCAAGAATCGA 59.360 43.478 24.62 0.00 39.11 3.59
2133 5971 4.283978 AGCCTGATCAGATCAAGAATCGAT 59.716 41.667 24.62 0.00 39.11 3.59
2134 5972 4.626604 GCCTGATCAGATCAAGAATCGATC 59.373 45.833 24.62 0.00 40.69 3.69
2135 5973 4.858140 CCTGATCAGATCAAGAATCGATCG 59.142 45.833 24.62 9.36 43.35 3.69
2136 5974 5.335504 CCTGATCAGATCAAGAATCGATCGA 60.336 44.000 24.62 21.86 43.35 3.59
2137 5975 5.456265 TGATCAGATCAAGAATCGATCGAC 58.544 41.667 22.06 8.95 43.35 4.20
2138 5976 3.878245 TCAGATCAAGAATCGATCGACG 58.122 45.455 22.06 6.95 43.35 5.12
2139 5977 2.403368 CAGATCAAGAATCGATCGACGC 59.597 50.000 22.06 15.15 43.35 5.19
2140 5978 1.716581 GATCAAGAATCGATCGACGCC 59.283 52.381 22.06 12.23 42.26 5.68
2141 5979 0.738975 TCAAGAATCGATCGACGCCT 59.261 50.000 22.06 14.35 42.26 5.52
2142 5980 1.134367 TCAAGAATCGATCGACGCCTT 59.866 47.619 22.06 19.14 42.26 4.35
2143 5981 1.256376 CAAGAATCGATCGACGCCTTG 59.744 52.381 26.73 26.73 42.26 3.61
2144 5982 0.872021 AGAATCGATCGACGCCTTGC 60.872 55.000 22.06 2.24 42.26 4.01
2145 5983 0.872021 GAATCGATCGACGCCTTGCT 60.872 55.000 22.06 0.00 42.26 3.91
2146 5984 0.460284 AATCGATCGACGCCTTGCTT 60.460 50.000 22.06 5.15 42.26 3.91
2147 5985 1.148157 ATCGATCGACGCCTTGCTTG 61.148 55.000 22.06 0.00 42.26 4.01
2148 5986 2.094659 CGATCGACGCCTTGCTTGT 61.095 57.895 10.26 0.00 34.51 3.16
2149 5987 0.800683 CGATCGACGCCTTGCTTGTA 60.801 55.000 10.26 0.00 34.51 2.41
2150 5988 0.645868 GATCGACGCCTTGCTTGTAC 59.354 55.000 0.00 0.00 0.00 2.90
2151 5989 1.076533 ATCGACGCCTTGCTTGTACG 61.077 55.000 0.00 0.00 0.00 3.67
2152 5990 2.474712 GACGCCTTGCTTGTACGC 59.525 61.111 0.00 0.00 0.00 4.42
2153 5991 3.023591 GACGCCTTGCTTGTACGCC 62.024 63.158 0.00 0.00 0.00 5.68
2154 5992 3.047280 CGCCTTGCTTGTACGCCA 61.047 61.111 0.00 0.00 0.00 5.69
2155 5993 2.561373 GCCTTGCTTGTACGCCAC 59.439 61.111 0.00 0.00 0.00 5.01
2156 5994 2.860293 CCTTGCTTGTACGCCACG 59.140 61.111 0.00 0.00 0.00 4.94
2157 5995 1.666553 CCTTGCTTGTACGCCACGA 60.667 57.895 0.00 0.00 0.00 4.35
2158 5996 1.491563 CTTGCTTGTACGCCACGAC 59.508 57.895 0.00 0.00 0.00 4.34
2159 5997 2.210524 CTTGCTTGTACGCCACGACG 62.211 60.000 0.00 0.00 39.50 5.12
2160 5998 2.429571 GCTTGTACGCCACGACGA 60.430 61.111 0.00 0.00 36.70 4.20
2161 5999 2.434134 GCTTGTACGCCACGACGAG 61.434 63.158 0.00 0.00 36.70 4.18
2162 6000 1.800315 CTTGTACGCCACGACGAGG 60.800 63.158 6.99 6.99 36.70 4.63
2163 6001 3.271706 TTGTACGCCACGACGAGGG 62.272 63.158 13.38 9.45 36.70 4.30
2168 6006 4.070552 GCCACGACGAGGGCTTCT 62.071 66.667 22.08 0.00 46.74 2.85
2169 6007 2.182030 CCACGACGAGGGCTTCTC 59.818 66.667 0.00 0.00 39.10 2.87
2178 6016 2.611225 GAGGGCTTCTCGTCATCAAT 57.389 50.000 0.00 0.00 32.18 2.57
2179 6017 3.735237 GAGGGCTTCTCGTCATCAATA 57.265 47.619 0.00 0.00 32.18 1.90
2180 6018 4.060038 GAGGGCTTCTCGTCATCAATAA 57.940 45.455 0.00 0.00 32.18 1.40
2181 6019 4.442706 GAGGGCTTCTCGTCATCAATAAA 58.557 43.478 0.00 0.00 32.18 1.40
2182 6020 5.041191 AGGGCTTCTCGTCATCAATAAAT 57.959 39.130 0.00 0.00 0.00 1.40
2183 6021 6.174720 AGGGCTTCTCGTCATCAATAAATA 57.825 37.500 0.00 0.00 0.00 1.40
2184 6022 6.773638 AGGGCTTCTCGTCATCAATAAATAT 58.226 36.000 0.00 0.00 0.00 1.28
2185 6023 7.907389 AGGGCTTCTCGTCATCAATAAATATA 58.093 34.615 0.00 0.00 0.00 0.86
2186 6024 7.819900 AGGGCTTCTCGTCATCAATAAATATAC 59.180 37.037 0.00 0.00 0.00 1.47
2187 6025 7.602644 GGGCTTCTCGTCATCAATAAATATACA 59.397 37.037 0.00 0.00 0.00 2.29
2188 6026 8.651588 GGCTTCTCGTCATCAATAAATATACAG 58.348 37.037 0.00 0.00 0.00 2.74
2189 6027 8.165428 GCTTCTCGTCATCAATAAATATACAGC 58.835 37.037 0.00 0.00 0.00 4.40
2190 6028 9.196552 CTTCTCGTCATCAATAAATATACAGCA 57.803 33.333 0.00 0.00 0.00 4.41
2191 6029 8.520835 TCTCGTCATCAATAAATATACAGCAC 57.479 34.615 0.00 0.00 0.00 4.40
2192 6030 7.326063 TCTCGTCATCAATAAATATACAGCACG 59.674 37.037 0.00 0.00 0.00 5.34
2193 6031 6.009474 CGTCATCAATAAATATACAGCACGC 58.991 40.000 0.00 0.00 0.00 5.34
2194 6032 6.346518 CGTCATCAATAAATATACAGCACGCA 60.347 38.462 0.00 0.00 0.00 5.24
2195 6033 7.011773 GTCATCAATAAATATACAGCACGCAG 58.988 38.462 0.00 0.00 0.00 5.18
2196 6034 5.342806 TCAATAAATATACAGCACGCAGC 57.657 39.130 0.00 0.00 46.19 5.25
2215 6053 3.277962 TCCGTCTGGGAGTAGGAAC 57.722 57.895 0.00 0.00 40.94 3.62
2216 6054 0.679002 TCCGTCTGGGAGTAGGAACG 60.679 60.000 0.00 0.00 40.94 3.95
2217 6055 1.139095 CGTCTGGGAGTAGGAACGC 59.861 63.158 0.00 0.00 0.00 4.84
2218 6056 1.313812 CGTCTGGGAGTAGGAACGCT 61.314 60.000 0.00 0.00 0.00 5.07
2219 6057 0.896226 GTCTGGGAGTAGGAACGCTT 59.104 55.000 0.00 0.00 0.00 4.68
2220 6058 1.135053 GTCTGGGAGTAGGAACGCTTC 60.135 57.143 0.00 0.00 0.00 3.86
2233 6071 3.821841 GAACGCTTCCAACTTTACATGG 58.178 45.455 0.00 0.00 38.09 3.66
2234 6072 2.858745 ACGCTTCCAACTTTACATGGT 58.141 42.857 0.00 0.00 37.94 3.55
2235 6073 4.010667 ACGCTTCCAACTTTACATGGTA 57.989 40.909 0.00 0.00 37.94 3.25
2236 6074 4.585879 ACGCTTCCAACTTTACATGGTAT 58.414 39.130 0.00 0.00 37.94 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.577875 AGCTAGCTTATCAGGCATGAATC 58.422 43.478 12.68 0.00 39.39 2.52
2 3 4.637387 AGCTAGCTTATCAGGCATGAAT 57.363 40.909 12.68 0.00 39.39 2.57
3 4 5.300752 GTTAGCTAGCTTATCAGGCATGAA 58.699 41.667 24.88 3.07 39.39 2.57
4 5 4.262635 GGTTAGCTAGCTTATCAGGCATGA 60.263 45.833 24.88 2.36 40.50 3.07
50 3812 0.093026 CGTGTCCAAATCTTCGTCGC 59.907 55.000 0.00 0.00 0.00 5.19
54 3816 0.713883 CGACCGTGTCCAAATCTTCG 59.286 55.000 0.00 0.00 0.00 3.79
91 3853 2.815211 CCAGTCGATGCGTGGGTG 60.815 66.667 0.00 0.00 0.00 4.61
95 3857 3.190849 CCTGCCAGTCGATGCGTG 61.191 66.667 0.00 0.00 0.00 5.34
107 3869 0.678950 GCTGAGATAGAGGTCCTGCC 59.321 60.000 0.00 0.00 37.58 4.85
140 3902 2.971330 AGGCCAAGGAGATCATACTCAG 59.029 50.000 5.01 0.00 38.51 3.35
143 3905 3.645687 GAGAAGGCCAAGGAGATCATACT 59.354 47.826 5.01 0.00 0.00 2.12
144 3906 3.389329 TGAGAAGGCCAAGGAGATCATAC 59.611 47.826 5.01 0.00 0.00 2.39
145 3907 3.657610 TGAGAAGGCCAAGGAGATCATA 58.342 45.455 5.01 0.00 0.00 2.15
169 3931 1.032657 CAGAGGTCGTCGGGATGTCT 61.033 60.000 0.00 0.00 0.00 3.41
189 3951 1.299926 AGTGTGAAGACGTCGTGGC 60.300 57.895 9.23 1.85 0.00 5.01
193 3955 1.278172 CCAGCAGTGTGAAGACGTCG 61.278 60.000 10.46 0.00 0.00 5.12
226 3988 1.140312 AGTTTCCAGAACCTGCAGGA 58.860 50.000 39.19 13.39 38.94 3.86
228 3990 1.882623 GGAAGTTTCCAGAACCTGCAG 59.117 52.381 6.78 6.78 46.76 4.41
248 4010 1.077212 CCATGGAGGGAAGCACTGG 60.077 63.158 5.56 0.00 0.00 4.00
289 4051 5.888161 ACCGCTTTATTTCTCTTGATCCAAT 59.112 36.000 0.00 0.00 0.00 3.16
301 4063 9.724839 TTTATAACATGCTTACCGCTTTATTTC 57.275 29.630 0.00 0.00 40.11 2.17
304 4066 7.283580 TGGTTTATAACATGCTTACCGCTTTAT 59.716 33.333 0.00 0.00 40.11 1.40
305 4067 6.598457 TGGTTTATAACATGCTTACCGCTTTA 59.402 34.615 0.00 0.00 40.11 1.85
308 4070 4.519213 TGGTTTATAACATGCTTACCGCT 58.481 39.130 0.00 0.00 40.11 5.52
309 4071 4.886247 TGGTTTATAACATGCTTACCGC 57.114 40.909 0.00 0.00 39.77 5.68
310 4072 6.293407 CCTCATGGTTTATAACATGCTTACCG 60.293 42.308 6.34 0.00 43.11 4.02
311 4073 6.016276 CCCTCATGGTTTATAACATGCTTACC 60.016 42.308 6.34 3.09 43.11 2.85
312 4074 6.770785 TCCCTCATGGTTTATAACATGCTTAC 59.229 38.462 6.34 0.00 43.11 2.34
313 4075 6.905736 TCCCTCATGGTTTATAACATGCTTA 58.094 36.000 6.34 0.00 43.11 3.09
314 4076 5.765510 TCCCTCATGGTTTATAACATGCTT 58.234 37.500 6.34 0.00 43.11 3.91
315 4077 5.387113 TCCCTCATGGTTTATAACATGCT 57.613 39.130 6.34 0.00 43.11 3.79
316 4078 6.463995 TTTCCCTCATGGTTTATAACATGC 57.536 37.500 6.34 0.00 43.11 4.06
317 4079 7.927629 CCATTTTCCCTCATGGTTTATAACATG 59.072 37.037 4.94 4.94 44.40 3.21
318 4080 7.071071 CCCATTTTCCCTCATGGTTTATAACAT 59.929 37.037 0.00 0.00 38.72 2.71
319 4081 6.382570 CCCATTTTCCCTCATGGTTTATAACA 59.617 38.462 0.00 0.00 38.72 2.41
320 4082 6.382859 ACCCATTTTCCCTCATGGTTTATAAC 59.617 38.462 0.00 0.00 38.72 1.89
321 4083 6.382570 CACCCATTTTCCCTCATGGTTTATAA 59.617 38.462 0.00 0.00 38.72 0.98
322 4084 5.896678 CACCCATTTTCCCTCATGGTTTATA 59.103 40.000 0.00 0.00 38.72 0.98
331 4093 0.776810 TGCTCACCCATTTTCCCTCA 59.223 50.000 0.00 0.00 0.00 3.86
364 4126 0.886490 CTTCTGGTGAGTGTGTGCCC 60.886 60.000 0.00 0.00 0.00 5.36
384 4146 7.330262 TGCATGTCTAGAACATTCAATCAGTA 58.670 34.615 0.00 0.00 46.73 2.74
388 4150 6.317140 TCCTTGCATGTCTAGAACATTCAATC 59.683 38.462 15.13 0.79 46.00 2.67
402 4164 4.005650 TCATCAACTTCTCCTTGCATGTC 58.994 43.478 0.00 0.00 0.00 3.06
408 4170 7.876582 TGATGCTATATCATCAACTTCTCCTTG 59.123 37.037 15.21 0.00 46.84 3.61
606 4368 0.106708 GATGCTGATTGGCCGGACTA 59.893 55.000 9.82 0.00 0.00 2.59
612 4374 2.740981 CGAGATAAGATGCTGATTGGCC 59.259 50.000 0.00 0.00 0.00 5.36
729 4516 3.058450 GTGCTGCATAAACACATTGCAA 58.942 40.909 5.27 0.00 44.99 4.08
730 4517 2.609984 GGTGCTGCATAAACACATTGCA 60.610 45.455 5.27 0.00 43.63 4.08
731 4518 1.994779 GGTGCTGCATAAACACATTGC 59.005 47.619 5.27 0.00 36.00 3.56
732 4519 3.300852 TGGTGCTGCATAAACACATTG 57.699 42.857 5.27 0.00 36.00 2.82
733 4520 3.321682 ACTTGGTGCTGCATAAACACATT 59.678 39.130 5.27 0.00 36.00 2.71
734 4521 2.892852 ACTTGGTGCTGCATAAACACAT 59.107 40.909 5.27 0.00 36.00 3.21
750 4537 1.168714 GAGCCTGGTTGCTAACTTGG 58.831 55.000 0.00 0.00 42.95 3.61
758 4545 1.831580 AATCTTCTGAGCCTGGTTGC 58.168 50.000 0.00 0.00 0.00 4.17
765 4552 5.414144 AGCTTGTTTCTTAATCTTCTGAGCC 59.586 40.000 0.00 0.00 0.00 4.70
830 4617 6.483307 TGATCGACAAAATTCAGATGGGATAC 59.517 38.462 0.00 0.00 0.00 2.24
955 4745 5.514274 TCAGTTTTCCAAAAGCGAGAAAT 57.486 34.783 0.00 0.00 30.13 2.17
974 4764 2.787473 TGGACCAGCCTACAAATCAG 57.213 50.000 0.00 0.00 37.63 2.90
996 4786 0.033228 CCTCCATGGAGCTCATCGTC 59.967 60.000 32.97 0.00 40.69 4.20
1010 4800 1.150536 GTGCCAACTGGAACCTCCA 59.849 57.895 0.00 0.00 45.98 3.86
1011 4801 1.966451 CGTGCCAACTGGAACCTCC 60.966 63.158 0.98 0.00 40.87 4.30
1014 4804 2.983592 CCCGTGCCAACTGGAACC 60.984 66.667 0.98 0.00 40.87 3.62
1017 4807 2.525629 TCTCCCGTGCCAACTGGA 60.526 61.111 0.00 0.00 37.36 3.86
1022 4812 3.691342 CGAGGTCTCCCGTGCCAA 61.691 66.667 0.00 0.00 35.12 4.52
1044 4834 0.109086 ATGACTTCTGCCACGACTCG 60.109 55.000 0.00 0.00 0.00 4.18
1101 4891 4.813697 GGCTTGTCTTTGAGTATGATCTCC 59.186 45.833 0.00 0.00 33.93 3.71
1137 4927 4.994471 CCAGCTGGCAGCACGACA 62.994 66.667 38.09 0.00 45.56 4.35
1245 5035 2.124570 ATTCCTTCGCGCCTGCAT 60.125 55.556 0.00 0.00 42.97 3.96
1250 5040 1.279840 GCATACATTCCTTCGCGCC 59.720 57.895 0.00 0.00 0.00 6.53
1278 5068 2.032550 ACTTATTCATGAGCGTGCATGC 59.967 45.455 23.58 23.58 44.08 4.06
1285 5075 9.438291 CCATTACTTAAAACTTATTCATGAGCG 57.562 33.333 0.00 0.00 0.00 5.03
1303 5093 8.696043 TGCTAGCATTTATTCATCCATTACTT 57.304 30.769 14.93 0.00 0.00 2.24
1310 5100 5.409520 TCGACATGCTAGCATTTATTCATCC 59.590 40.000 27.59 6.91 33.90 3.51
1325 5115 0.179054 ATGCTGATGCTCGACATGCT 60.179 50.000 5.41 0.00 39.84 3.79
1352 5142 4.650985 ACGAAACGAAAAGTTACACCAAC 58.349 39.130 0.00 0.00 43.37 3.77
1355 5145 3.309410 TGGACGAAACGAAAAGTTACACC 59.691 43.478 0.00 0.00 43.37 4.16
1389 5214 5.009610 GGAATTAGTCCAGAGCACAAACAAA 59.990 40.000 0.00 0.00 46.97 2.83
1409 5234 3.565307 TGGTGCTCTTTCAAACAGGAAT 58.435 40.909 0.00 0.00 0.00 3.01
1426 5251 9.490379 GGATAATAAGATACTACAAACCTGGTG 57.510 37.037 0.00 0.00 0.00 4.17
1445 5274 9.639563 TGCCAATCTCTAATTTTGTGGATAATA 57.360 29.630 0.00 0.00 0.00 0.98
1473 5302 1.628846 GTGGAAAGACTAGGAAGGCCA 59.371 52.381 5.01 0.00 36.29 5.36
1474 5303 1.405661 CGTGGAAAGACTAGGAAGGCC 60.406 57.143 0.00 0.00 0.00 5.19
1477 5306 1.630148 CGCGTGGAAAGACTAGGAAG 58.370 55.000 0.00 0.00 0.00 3.46
1478 5307 0.245539 CCGCGTGGAAAGACTAGGAA 59.754 55.000 10.20 0.00 37.49 3.36
1479 5308 1.888018 CCGCGTGGAAAGACTAGGA 59.112 57.895 10.20 0.00 37.49 2.94
1487 5316 3.545124 ATGGACTGCCGCGTGGAAA 62.545 57.895 21.76 4.74 37.49 3.13
1495 5324 1.134098 AGGATACCAAATGGACTGCCG 60.134 52.381 6.42 0.00 38.94 5.69
1534 5363 1.369091 GCAGGCATGGTTCGTACAGG 61.369 60.000 0.00 0.00 0.00 4.00
1550 5379 1.879380 TCAAAGGGAACATGAACGCAG 59.121 47.619 0.00 0.00 0.00 5.18
1585 5414 4.655762 TCCATGTATATATGGCGCTCTC 57.344 45.455 20.69 0.00 45.83 3.20
1591 5420 7.826252 ACTGACTTTCATCCATGTATATATGGC 59.174 37.037 20.69 7.38 45.83 4.40
1604 5433 5.067805 ACAAGTTTGGAACTGACTTTCATCC 59.932 40.000 0.00 0.00 41.91 3.51
1610 5439 4.273480 CGATGACAAGTTTGGAACTGACTT 59.727 41.667 0.00 0.00 41.91 3.01
1611 5440 3.809832 CGATGACAAGTTTGGAACTGACT 59.190 43.478 0.00 0.00 41.91 3.41
1624 5453 7.121974 ACTAAAACTCATTGACGATGACAAG 57.878 36.000 0.84 0.00 39.83 3.16
1626 5455 6.147164 GGAACTAAAACTCATTGACGATGACA 59.853 38.462 0.84 0.00 39.83 3.58
1627 5456 6.402226 GGGAACTAAAACTCATTGACGATGAC 60.402 42.308 0.84 0.00 39.83 3.06
1633 5471 3.119955 GCGGGGAACTAAAACTCATTGAC 60.120 47.826 0.00 0.00 0.00 3.18
1637 5475 1.353022 TGGCGGGGAACTAAAACTCAT 59.647 47.619 0.00 0.00 0.00 2.90
1650 5488 2.075338 CATTGACAAATTTTGGCGGGG 58.925 47.619 13.42 0.34 43.38 5.73
1660 5498 8.739039 TCGATCTAAATGGTTTCATTGACAAAT 58.261 29.630 0.00 0.00 42.29 2.32
1668 5506 8.725148 GCTGATATTCGATCTAAATGGTTTCAT 58.275 33.333 0.00 0.00 34.56 2.57
1694 5532 3.807622 TCGCAAGAGACCAACTGTAAAAG 59.192 43.478 0.00 0.00 45.01 2.27
1711 5549 0.534873 TGATGAAGATCCGGTCGCAA 59.465 50.000 0.00 0.00 0.00 4.85
1729 5567 5.929697 TCATCACTAGCAACTTGAAAGTG 57.070 39.130 13.79 13.79 39.66 3.16
1730 5568 6.058183 AGTTCATCACTAGCAACTTGAAAGT 58.942 36.000 0.00 0.00 35.56 2.66
1733 5571 7.171508 CAGTTAGTTCATCACTAGCAACTTGAA 59.828 37.037 0.00 0.00 40.76 2.69
1735 5573 6.128445 CCAGTTAGTTCATCACTAGCAACTTG 60.128 42.308 0.00 0.00 40.76 3.16
1770 5608 9.952030 TGTTTCATCACCTATTGACTATGTTAA 57.048 29.630 0.00 0.00 36.92 2.01
1772 5610 9.113838 GATGTTTCATCACCTATTGACTATGTT 57.886 33.333 5.06 0.00 36.92 2.71
1774 5612 7.653311 TCGATGTTTCATCACCTATTGACTATG 59.347 37.037 9.81 0.00 36.92 2.23
1775 5613 7.726216 TCGATGTTTCATCACCTATTGACTAT 58.274 34.615 9.81 0.00 36.92 2.12
1776 5614 7.107639 TCGATGTTTCATCACCTATTGACTA 57.892 36.000 9.81 0.00 36.92 2.59
1778 5616 6.073548 GGATCGATGTTTCATCACCTATTGAC 60.074 42.308 0.54 0.00 36.92 3.18
1779 5617 5.991606 GGATCGATGTTTCATCACCTATTGA 59.008 40.000 0.54 0.00 39.11 2.57
1780 5618 5.180117 GGGATCGATGTTTCATCACCTATTG 59.820 44.000 0.54 0.00 0.00 1.90
1781 5619 5.163205 TGGGATCGATGTTTCATCACCTATT 60.163 40.000 0.54 0.00 0.00 1.73
1782 5620 4.347876 TGGGATCGATGTTTCATCACCTAT 59.652 41.667 0.54 0.00 0.00 2.57
1783 5621 3.709141 TGGGATCGATGTTTCATCACCTA 59.291 43.478 0.54 0.00 0.00 3.08
1784 5622 2.505407 TGGGATCGATGTTTCATCACCT 59.495 45.455 0.54 0.00 0.00 4.00
1791 5629 2.093447 AGAGGTGTGGGATCGATGTTTC 60.093 50.000 0.54 0.00 0.00 2.78
1832 5670 9.764363 TGATATGACCATAGAACATGAAAGTAC 57.236 33.333 0.00 0.00 0.00 2.73
1863 5701 6.146601 TGTCAAGTGCAATCAAGAAATGAA 57.853 33.333 0.00 0.00 42.54 2.57
1864 5702 5.771153 TGTCAAGTGCAATCAAGAAATGA 57.229 34.783 0.00 0.00 43.67 2.57
1865 5703 5.981315 AGTTGTCAAGTGCAATCAAGAAATG 59.019 36.000 0.00 0.00 0.00 2.32
1871 5709 4.823442 AGATGAGTTGTCAAGTGCAATCAA 59.177 37.500 0.00 0.00 35.88 2.57
1882 5720 4.832823 TGTAAGTCCAGAGATGAGTTGTCA 59.167 41.667 0.00 0.00 37.02 3.58
1903 5741 7.899973 ACTTCAATTTTCAGGAATTGCTATGT 58.100 30.769 0.00 0.00 43.42 2.29
1912 5750 8.748412 CCCATTATGTACTTCAATTTTCAGGAA 58.252 33.333 0.00 0.00 0.00 3.36
1917 5755 7.418337 ACCCCCATTATGTACTTCAATTTTC 57.582 36.000 0.00 0.00 0.00 2.29
1922 5760 4.019141 ACGAACCCCCATTATGTACTTCAA 60.019 41.667 0.00 0.00 0.00 2.69
1931 5769 3.778629 AGTGAAGTACGAACCCCCATTAT 59.221 43.478 0.00 0.00 0.00 1.28
1941 5779 6.703319 TGGAATCCATTTAGTGAAGTACGAA 58.297 36.000 0.00 0.00 0.00 3.85
1978 5816 6.204359 GCAATGAATGTTTATCTAGTGGCAG 58.796 40.000 0.00 0.00 0.00 4.85
1981 5819 6.698008 TGGCAATGAATGTTTATCTAGTGG 57.302 37.500 0.00 0.00 0.00 4.00
1988 5826 7.798071 AGAATTCCATGGCAATGAATGTTTAT 58.202 30.769 6.96 0.97 35.67 1.40
1989 5827 7.185318 AGAATTCCATGGCAATGAATGTTTA 57.815 32.000 6.96 0.00 35.67 2.01
1990 5828 6.057321 AGAATTCCATGGCAATGAATGTTT 57.943 33.333 6.96 2.24 35.67 2.83
1992 5830 5.687166 AAGAATTCCATGGCAATGAATGT 57.313 34.783 6.96 6.31 35.67 2.71
1993 5831 8.495361 TTTTAAGAATTCCATGGCAATGAATG 57.505 30.769 6.96 0.00 35.67 2.67
1994 5832 8.949177 GTTTTTAAGAATTCCATGGCAATGAAT 58.051 29.630 6.96 8.54 35.67 2.57
1996 5834 7.387397 GTGTTTTTAAGAATTCCATGGCAATGA 59.613 33.333 6.96 0.00 35.67 2.57
1997 5835 7.172875 TGTGTTTTTAAGAATTCCATGGCAATG 59.827 33.333 6.96 0.00 0.00 2.82
1998 5836 7.173047 GTGTGTTTTTAAGAATTCCATGGCAAT 59.827 33.333 6.96 5.24 0.00 3.56
2003 5841 8.592105 ATGTGTGTGTTTTTAAGAATTCCATG 57.408 30.769 0.65 0.00 0.00 3.66
2019 5857 5.178623 CCAATACGTCTAACAATGTGTGTGT 59.821 40.000 0.00 0.00 40.60 3.72
2029 5867 6.432162 AGAGTACAGAACCAATACGTCTAACA 59.568 38.462 0.00 0.00 0.00 2.41
2030 5868 6.850555 AGAGTACAGAACCAATACGTCTAAC 58.149 40.000 0.00 0.00 0.00 2.34
2031 5869 8.743085 ATAGAGTACAGAACCAATACGTCTAA 57.257 34.615 0.00 0.00 0.00 2.10
2032 5870 8.743085 AATAGAGTACAGAACCAATACGTCTA 57.257 34.615 0.00 0.00 0.00 2.59
2033 5871 7.642082 AATAGAGTACAGAACCAATACGTCT 57.358 36.000 0.00 0.00 0.00 4.18
2034 5872 9.962783 ATTAATAGAGTACAGAACCAATACGTC 57.037 33.333 0.00 0.00 0.00 4.34
2040 5878 9.483489 TGGAGTATTAATAGAGTACAGAACCAA 57.517 33.333 0.00 0.00 0.00 3.67
2041 5879 9.656323 ATGGAGTATTAATAGAGTACAGAACCA 57.344 33.333 0.00 0.00 0.00 3.67
2042 5880 9.915629 CATGGAGTATTAATAGAGTACAGAACC 57.084 37.037 0.00 0.00 0.00 3.62
2056 5894 8.429641 GGAGGTTGAGATTACATGGAGTATTAA 58.570 37.037 0.00 0.00 31.53 1.40
2057 5895 7.789831 AGGAGGTTGAGATTACATGGAGTATTA 59.210 37.037 0.00 0.00 31.53 0.98
2058 5896 6.617371 AGGAGGTTGAGATTACATGGAGTATT 59.383 38.462 0.00 0.00 31.53 1.89
2059 5897 6.146760 AGGAGGTTGAGATTACATGGAGTAT 58.853 40.000 0.00 0.00 31.53 2.12
2060 5898 5.529289 AGGAGGTTGAGATTACATGGAGTA 58.471 41.667 0.00 0.00 0.00 2.59
2061 5899 4.366267 AGGAGGTTGAGATTACATGGAGT 58.634 43.478 0.00 0.00 0.00 3.85
2062 5900 5.130145 AGAAGGAGGTTGAGATTACATGGAG 59.870 44.000 0.00 0.00 0.00 3.86
2063 5901 5.032846 AGAAGGAGGTTGAGATTACATGGA 58.967 41.667 0.00 0.00 0.00 3.41
2064 5902 5.121811 CAGAAGGAGGTTGAGATTACATGG 58.878 45.833 0.00 0.00 0.00 3.66
2065 5903 5.738909 ACAGAAGGAGGTTGAGATTACATG 58.261 41.667 0.00 0.00 0.00 3.21
2066 5904 7.566879 AGATACAGAAGGAGGTTGAGATTACAT 59.433 37.037 0.00 0.00 0.00 2.29
2067 5905 6.897966 AGATACAGAAGGAGGTTGAGATTACA 59.102 38.462 0.00 0.00 0.00 2.41
2068 5906 7.286775 AGAGATACAGAAGGAGGTTGAGATTAC 59.713 40.741 0.00 0.00 0.00 1.89
2069 5907 7.358263 AGAGATACAGAAGGAGGTTGAGATTA 58.642 38.462 0.00 0.00 0.00 1.75
2070 5908 6.201591 AGAGATACAGAAGGAGGTTGAGATT 58.798 40.000 0.00 0.00 0.00 2.40
2071 5909 5.776358 AGAGATACAGAAGGAGGTTGAGAT 58.224 41.667 0.00 0.00 0.00 2.75
2072 5910 5.199982 AGAGATACAGAAGGAGGTTGAGA 57.800 43.478 0.00 0.00 0.00 3.27
2073 5911 5.930837 AAGAGATACAGAAGGAGGTTGAG 57.069 43.478 0.00 0.00 0.00 3.02
2074 5912 7.792364 TTAAAGAGATACAGAAGGAGGTTGA 57.208 36.000 0.00 0.00 0.00 3.18
2075 5913 8.722394 GTTTTAAAGAGATACAGAAGGAGGTTG 58.278 37.037 0.00 0.00 0.00 3.77
2076 5914 8.661345 AGTTTTAAAGAGATACAGAAGGAGGTT 58.339 33.333 0.00 0.00 0.00 3.50
2077 5915 8.208575 AGTTTTAAAGAGATACAGAAGGAGGT 57.791 34.615 0.00 0.00 0.00 3.85
2078 5916 8.536175 AGAGTTTTAAAGAGATACAGAAGGAGG 58.464 37.037 0.00 0.00 0.00 4.30
2079 5917 9.936759 AAGAGTTTTAAAGAGATACAGAAGGAG 57.063 33.333 0.00 0.00 0.00 3.69
2080 5918 9.712305 CAAGAGTTTTAAAGAGATACAGAAGGA 57.288 33.333 0.00 0.00 0.00 3.36
2081 5919 8.447053 GCAAGAGTTTTAAAGAGATACAGAAGG 58.553 37.037 0.00 0.00 0.00 3.46
2082 5920 8.447053 GGCAAGAGTTTTAAAGAGATACAGAAG 58.553 37.037 0.00 0.00 0.00 2.85
2083 5921 8.157476 AGGCAAGAGTTTTAAAGAGATACAGAA 58.843 33.333 0.00 0.00 0.00 3.02
2084 5922 7.680730 AGGCAAGAGTTTTAAAGAGATACAGA 58.319 34.615 0.00 0.00 0.00 3.41
2085 5923 7.913674 AGGCAAGAGTTTTAAAGAGATACAG 57.086 36.000 0.00 0.00 0.00 2.74
2086 5924 7.549488 GCTAGGCAAGAGTTTTAAAGAGATACA 59.451 37.037 0.00 0.00 0.00 2.29
2087 5925 7.011576 GGCTAGGCAAGAGTTTTAAAGAGATAC 59.988 40.741 12.16 0.00 0.00 2.24
2088 5926 7.048512 GGCTAGGCAAGAGTTTTAAAGAGATA 58.951 38.462 12.16 0.00 0.00 1.98
2089 5927 5.883115 GGCTAGGCAAGAGTTTTAAAGAGAT 59.117 40.000 12.16 0.00 0.00 2.75
2090 5928 5.013183 AGGCTAGGCAAGAGTTTTAAAGAGA 59.987 40.000 19.70 0.00 0.00 3.10
2091 5929 5.123027 CAGGCTAGGCAAGAGTTTTAAAGAG 59.877 44.000 19.70 0.00 0.00 2.85
2092 5930 5.003804 CAGGCTAGGCAAGAGTTTTAAAGA 58.996 41.667 19.70 0.00 0.00 2.52
2093 5931 5.003804 TCAGGCTAGGCAAGAGTTTTAAAG 58.996 41.667 19.70 0.00 0.00 1.85
2094 5932 4.980573 TCAGGCTAGGCAAGAGTTTTAAA 58.019 39.130 19.70 0.00 0.00 1.52
2095 5933 4.634012 TCAGGCTAGGCAAGAGTTTTAA 57.366 40.909 19.70 0.00 0.00 1.52
2096 5934 4.225042 TGATCAGGCTAGGCAAGAGTTTTA 59.775 41.667 19.70 0.00 0.00 1.52
2097 5935 3.009473 TGATCAGGCTAGGCAAGAGTTTT 59.991 43.478 19.70 0.93 0.00 2.43
2098 5936 2.573462 TGATCAGGCTAGGCAAGAGTTT 59.427 45.455 19.70 1.29 0.00 2.66
2099 5937 2.170187 CTGATCAGGCTAGGCAAGAGTT 59.830 50.000 19.70 2.01 0.00 3.01
2100 5938 1.761784 CTGATCAGGCTAGGCAAGAGT 59.238 52.381 19.70 6.30 0.00 3.24
2101 5939 2.037901 TCTGATCAGGCTAGGCAAGAG 58.962 52.381 22.42 6.76 0.00 2.85
2102 5940 2.165357 TCTGATCAGGCTAGGCAAGA 57.835 50.000 22.42 15.76 0.00 3.02
2103 5941 2.367894 TGATCTGATCAGGCTAGGCAAG 59.632 50.000 22.42 10.64 33.59 4.01
2104 5942 2.401568 TGATCTGATCAGGCTAGGCAA 58.598 47.619 22.42 6.46 33.59 4.52
2105 5943 2.092598 TGATCTGATCAGGCTAGGCA 57.907 50.000 22.42 8.95 33.59 4.75
2106 5944 2.632028 TCTTGATCTGATCAGGCTAGGC 59.368 50.000 22.42 8.55 40.94 3.93
2107 5945 4.952071 TTCTTGATCTGATCAGGCTAGG 57.048 45.455 22.42 10.47 40.94 3.02
2108 5946 5.048154 TCGATTCTTGATCTGATCAGGCTAG 60.048 44.000 22.42 18.51 40.94 3.42
2109 5947 4.829492 TCGATTCTTGATCTGATCAGGCTA 59.171 41.667 22.42 13.48 40.94 3.93
2110 5948 3.640498 TCGATTCTTGATCTGATCAGGCT 59.360 43.478 22.42 10.43 40.94 4.58
2111 5949 3.987547 TCGATTCTTGATCTGATCAGGC 58.012 45.455 22.42 14.90 40.94 4.85
2112 5950 4.858140 CGATCGATTCTTGATCTGATCAGG 59.142 45.833 22.42 20.22 40.64 3.86
2113 5951 5.568677 GTCGATCGATTCTTGATCTGATCAG 59.431 44.000 22.50 17.07 40.64 2.90
2114 5952 5.456265 GTCGATCGATTCTTGATCTGATCA 58.544 41.667 22.50 16.06 40.64 2.92
2115 5953 4.553045 CGTCGATCGATTCTTGATCTGATC 59.447 45.833 22.50 10.72 40.05 2.92
2116 5954 4.471373 CGTCGATCGATTCTTGATCTGAT 58.529 43.478 22.50 0.00 40.05 2.90
2117 5955 3.850010 GCGTCGATCGATTCTTGATCTGA 60.850 47.826 22.50 0.00 40.05 3.27
2118 5956 2.403368 GCGTCGATCGATTCTTGATCTG 59.597 50.000 22.50 3.78 40.05 2.90
2119 5957 2.605823 GGCGTCGATCGATTCTTGATCT 60.606 50.000 22.50 0.00 40.05 2.75
2120 5958 1.716581 GGCGTCGATCGATTCTTGATC 59.283 52.381 22.50 4.51 42.86 2.92
2121 5959 1.338337 AGGCGTCGATCGATTCTTGAT 59.662 47.619 22.50 1.30 42.86 2.57
2122 5960 0.738975 AGGCGTCGATCGATTCTTGA 59.261 50.000 22.50 0.00 42.86 3.02
2123 5961 1.256376 CAAGGCGTCGATCGATTCTTG 59.744 52.381 27.16 27.16 42.86 3.02
2124 5962 1.560923 CAAGGCGTCGATCGATTCTT 58.439 50.000 22.50 19.88 42.86 2.52
2125 5963 0.872021 GCAAGGCGTCGATCGATTCT 60.872 55.000 22.50 15.39 42.86 2.40
2126 5964 0.872021 AGCAAGGCGTCGATCGATTC 60.872 55.000 22.50 15.23 42.86 2.52
2127 5965 0.460284 AAGCAAGGCGTCGATCGATT 60.460 50.000 22.50 8.56 42.86 3.34
2128 5966 1.141881 AAGCAAGGCGTCGATCGAT 59.858 52.632 22.50 0.00 42.86 3.59
2129 5967 1.805539 CAAGCAAGGCGTCGATCGA 60.806 57.895 15.15 15.15 42.86 3.59
2130 5968 0.800683 TACAAGCAAGGCGTCGATCG 60.801 55.000 9.36 9.36 43.12 3.69
2131 5969 0.645868 GTACAAGCAAGGCGTCGATC 59.354 55.000 0.00 0.00 0.00 3.69
2132 5970 1.076533 CGTACAAGCAAGGCGTCGAT 61.077 55.000 0.00 0.00 0.00 3.59
2133 5971 1.731613 CGTACAAGCAAGGCGTCGA 60.732 57.895 0.00 0.00 0.00 4.20
2134 5972 2.769617 CGTACAAGCAAGGCGTCG 59.230 61.111 0.00 0.00 0.00 5.12
2135 5973 2.474712 GCGTACAAGCAAGGCGTC 59.525 61.111 0.00 0.00 37.05 5.19
2136 5974 3.047877 GGCGTACAAGCAAGGCGT 61.048 61.111 0.00 0.00 39.27 5.68
2137 5975 3.047280 TGGCGTACAAGCAAGGCG 61.047 61.111 0.00 0.00 39.27 5.52
2138 5976 2.561373 GTGGCGTACAAGCAAGGC 59.439 61.111 0.00 0.00 39.27 4.35
2139 5977 1.666553 TCGTGGCGTACAAGCAAGG 60.667 57.895 0.00 0.00 39.27 3.61
2140 5978 1.491563 GTCGTGGCGTACAAGCAAG 59.508 57.895 0.00 0.00 39.27 4.01
2141 5979 2.304401 CGTCGTGGCGTACAAGCAA 61.304 57.895 0.00 0.00 39.27 3.91
2142 5980 2.731721 CGTCGTGGCGTACAAGCA 60.732 61.111 0.00 0.00 39.27 3.91
2143 5981 2.429571 TCGTCGTGGCGTACAAGC 60.430 61.111 0.00 0.00 0.00 4.01
2144 5982 1.800315 CCTCGTCGTGGCGTACAAG 60.800 63.158 0.00 0.00 0.00 3.16
2145 5983 2.256158 CCTCGTCGTGGCGTACAA 59.744 61.111 0.00 0.00 0.00 2.41
2146 5984 3.740397 CCCTCGTCGTGGCGTACA 61.740 66.667 7.84 0.00 0.00 2.90
2152 5990 2.182030 GAGAAGCCCTCGTCGTGG 59.818 66.667 6.36 6.36 31.32 4.94
2159 5997 2.611225 ATTGATGACGAGAAGCCCTC 57.389 50.000 0.00 0.00 38.55 4.30
2160 5998 4.487714 TTTATTGATGACGAGAAGCCCT 57.512 40.909 0.00 0.00 0.00 5.19
2161 5999 7.602644 TGTATATTTATTGATGACGAGAAGCCC 59.397 37.037 0.00 0.00 0.00 5.19
2162 6000 8.534333 TGTATATTTATTGATGACGAGAAGCC 57.466 34.615 0.00 0.00 0.00 4.35
2163 6001 8.165428 GCTGTATATTTATTGATGACGAGAAGC 58.835 37.037 0.00 0.00 0.00 3.86
2164 6002 9.196552 TGCTGTATATTTATTGATGACGAGAAG 57.803 33.333 0.00 0.00 0.00 2.85
2165 6003 8.978539 GTGCTGTATATTTATTGATGACGAGAA 58.021 33.333 0.00 0.00 0.00 2.87
2166 6004 7.326063 CGTGCTGTATATTTATTGATGACGAGA 59.674 37.037 0.00 0.00 0.00 4.04
2167 6005 7.440281 CGTGCTGTATATTTATTGATGACGAG 58.560 38.462 0.00 0.00 0.00 4.18
2168 6006 6.128929 GCGTGCTGTATATTTATTGATGACGA 60.129 38.462 0.00 0.00 0.00 4.20
2169 6007 6.009474 GCGTGCTGTATATTTATTGATGACG 58.991 40.000 0.00 0.00 0.00 4.35
2170 6008 6.887368 TGCGTGCTGTATATTTATTGATGAC 58.113 36.000 0.00 0.00 0.00 3.06
2171 6009 6.347644 GCTGCGTGCTGTATATTTATTGATGA 60.348 38.462 0.72 0.00 38.95 2.92
2172 6010 5.791974 GCTGCGTGCTGTATATTTATTGATG 59.208 40.000 0.72 0.00 38.95 3.07
2173 6011 5.931532 GCTGCGTGCTGTATATTTATTGAT 58.068 37.500 0.72 0.00 38.95 2.57
2174 6012 5.342806 GCTGCGTGCTGTATATTTATTGA 57.657 39.130 0.72 0.00 38.95 2.57
2197 6035 0.679002 CGTTCCTACTCCCAGACGGA 60.679 60.000 0.00 0.00 38.83 4.69
2198 6036 1.807886 CGTTCCTACTCCCAGACGG 59.192 63.158 0.00 0.00 0.00 4.79
2199 6037 1.139095 GCGTTCCTACTCCCAGACG 59.861 63.158 0.00 0.00 0.00 4.18
2200 6038 0.896226 AAGCGTTCCTACTCCCAGAC 59.104 55.000 0.00 0.00 0.00 3.51
2201 6039 1.183549 GAAGCGTTCCTACTCCCAGA 58.816 55.000 0.00 0.00 0.00 3.86
2202 6040 0.175989 GGAAGCGTTCCTACTCCCAG 59.824 60.000 8.87 0.00 46.57 4.45
2203 6041 2.283824 GGAAGCGTTCCTACTCCCA 58.716 57.895 8.87 0.00 46.57 4.37
2212 6050 3.252458 ACCATGTAAAGTTGGAAGCGTTC 59.748 43.478 0.00 0.00 0.00 3.95
2213 6051 3.219281 ACCATGTAAAGTTGGAAGCGTT 58.781 40.909 0.00 0.00 0.00 4.84
2214 6052 2.858745 ACCATGTAAAGTTGGAAGCGT 58.141 42.857 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.