Multiple sequence alignment - TraesCS1B01G033600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G033600 chr1B 100.000 3872 0 0 1 3872 16399182 16403053 0.000000e+00 7151.0
1 TraesCS1B01G033600 chr1B 93.909 1970 90 10 1735 3679 39814909 39816873 0.000000e+00 2946.0
2 TraesCS1B01G033600 chr1B 89.260 2067 150 41 1735 3764 16224897 16222866 0.000000e+00 2521.0
3 TraesCS1B01G033600 chr1B 90.571 1909 130 30 1735 3612 23598202 23600091 0.000000e+00 2483.0
4 TraesCS1B01G033600 chr1B 88.223 1902 159 36 1735 3612 39732976 39734836 0.000000e+00 2211.0
5 TraesCS1B01G033600 chr1B 93.068 1183 72 7 1735 2911 23775714 23776892 0.000000e+00 1722.0
6 TraesCS1B01G033600 chr1B 92.548 671 39 6 1 661 615755493 615756162 0.000000e+00 952.0
7 TraesCS1B01G033600 chr1B 88.543 803 49 15 1 773 637625848 637626637 0.000000e+00 933.0
8 TraesCS1B01G033600 chr1B 89.971 339 27 4 955 1292 39813033 39813365 7.690000e-117 431.0
9 TraesCS1B01G033600 chr1B 89.790 333 25 3 955 1287 23774888 23775211 5.980000e-113 418.0
10 TraesCS1B01G033600 chr1B 97.561 205 2 1 1304 1508 23775293 23775494 7.960000e-92 348.0
11 TraesCS1B01G033600 chr1B 94.175 206 4 1 1519 1724 23775450 23775647 1.350000e-79 307.0
12 TraesCS1B01G033600 chr1B 95.455 154 6 1 3612 3764 39816847 39817000 1.070000e-60 244.0
13 TraesCS1B01G033600 chr1B 95.192 104 5 0 1304 1407 39814563 39814666 8.610000e-37 165.0
14 TraesCS1B01G033600 chr1B 89.655 116 10 1 3759 3872 564972228 564972343 3.120000e-31 147.0
15 TraesCS1B01G033600 chr1B 100.000 37 0 0 1519 1555 16400645 16400681 6.940000e-08 69.4
16 TraesCS1B01G033600 chr1B 100.000 37 0 0 1464 1500 16400700 16400736 6.940000e-08 69.4
17 TraesCS1B01G033600 chr1D 91.371 2028 127 24 1773 3764 10930559 10932574 0.000000e+00 2732.0
18 TraesCS1B01G033600 chr1D 90.218 2014 145 28 1735 3718 10775022 10773031 0.000000e+00 2580.0
19 TraesCS1B01G033600 chr1D 84.572 888 84 29 2910 3764 10762302 10761435 0.000000e+00 832.0
20 TraesCS1B01G033600 chr1D 95.753 518 18 2 772 1289 10777203 10776690 0.000000e+00 832.0
21 TraesCS1B01G033600 chr1D 82.807 855 88 32 2910 3741 10845853 10846671 0.000000e+00 710.0
22 TraesCS1B01G033600 chr1D 90.909 528 30 7 773 1289 10835579 10836099 0.000000e+00 693.0
23 TraesCS1B01G033600 chr1D 96.585 205 4 1 1304 1508 10776607 10776406 1.720000e-88 337.0
24 TraesCS1B01G033600 chr1D 94.258 209 4 1 1519 1727 10836297 10836497 2.900000e-81 313.0
25 TraesCS1B01G033600 chr1D 88.000 200 22 2 1091 1289 10764216 10764018 6.470000e-58 235.0
26 TraesCS1B01G033600 chr1D 94.595 148 0 1 1519 1666 10776450 10776311 5.040000e-54 222.0
27 TraesCS1B01G033600 chr1D 98.864 88 1 0 1421 1508 10836254 10836341 1.440000e-34 158.0
28 TraesCS1B01G033600 chr1D 80.571 175 21 7 1561 1727 10763915 10763746 5.250000e-24 122.0
29 TraesCS1B01G033600 chr1D 94.667 75 4 0 1657 1731 10775157 10775083 2.440000e-22 117.0
30 TraesCS1B01G033600 chr1D 98.077 52 1 0 1345 1396 10836204 10836255 1.480000e-14 91.6
31 TraesCS1B01G033600 chr1A 88.956 1992 170 26 1735 3696 13213155 13215126 0.000000e+00 2414.0
32 TraesCS1B01G033600 chr1A 88.423 2073 147 35 1735 3764 13272684 13274706 0.000000e+00 2412.0
33 TraesCS1B01G033600 chr1A 88.448 2043 148 33 1773 3764 22761393 22759388 0.000000e+00 2385.0
34 TraesCS1B01G033600 chr1A 89.267 1938 161 31 1735 3644 13229767 13231685 0.000000e+00 2383.0
35 TraesCS1B01G033600 chr1A 90.664 1446 111 16 1735 3167 13009140 13007706 0.000000e+00 1901.0
36 TraesCS1B01G033600 chr1A 82.794 680 65 20 2910 3555 13257203 13257864 9.390000e-156 560.0
37 TraesCS1B01G033600 chr1A 92.987 385 21 1 907 1291 13250303 13250681 1.220000e-154 556.0
38 TraesCS1B01G033600 chr1A 94.286 210 4 2 1519 1728 13255690 13255891 8.080000e-82 315.0
39 TraesCS1B01G033600 chr1A 84.815 270 39 2 1020 1288 13272079 13272347 1.770000e-68 270.0
40 TraesCS1B01G033600 chr1A 88.372 215 25 0 1077 1291 22818640 22818426 3.840000e-65 259.0
41 TraesCS1B01G033600 chr1A 89.000 200 20 2 1091 1289 13229108 13229306 2.990000e-61 246.0
42 TraesCS1B01G033600 chr1A 87.383 214 25 2 1077 1289 13009813 13009601 1.070000e-60 244.0
43 TraesCS1B01G033600 chr1A 96.350 137 2 2 1374 1508 13255599 13255734 5.040000e-54 222.0
44 TraesCS1B01G033600 chr1A 84.925 199 28 2 1091 1288 13266916 13267113 2.360000e-47 200.0
45 TraesCS1B01G033600 chr1A 90.066 151 12 1 1304 1454 22818345 22818198 3.950000e-45 193.0
46 TraesCS1B01G033600 chr1A 86.420 162 10 3 3610 3759 13257869 13258030 2.390000e-37 167.0
47 TraesCS1B01G033600 chr1A 97.531 81 1 1 1304 1383 13250760 13250840 1.880000e-28 137.0
48 TraesCS1B01G033600 chr1A 81.065 169 24 5 1561 1727 13009498 13009336 1.130000e-25 128.0
49 TraesCS1B01G033600 chr1A 81.595 163 22 5 1561 1721 13229409 13229565 1.130000e-25 128.0
50 TraesCS1B01G033600 chr1A 81.879 149 21 3 1580 1727 22790820 22790677 1.890000e-23 121.0
51 TraesCS1B01G033600 chr1A 94.737 57 1 2 1579 1634 13005893 13005838 1.920000e-13 87.9
52 TraesCS1B01G033600 chr1A 97.436 39 1 0 3726 3764 13215139 13215177 2.500000e-07 67.6
53 TraesCS1B01G033600 chr2B 91.858 786 50 8 1 772 47646035 47645250 0.000000e+00 1085.0
54 TraesCS1B01G033600 chr2B 86.324 797 61 16 1 776 728930409 728929640 0.000000e+00 824.0
55 TraesCS1B01G033600 chr2B 88.787 544 46 3 242 775 491346592 491346054 0.000000e+00 652.0
56 TraesCS1B01G033600 chr2B 86.256 211 19 2 576 776 232455012 232455222 1.810000e-53 220.0
57 TraesCS1B01G033600 chr2B 84.649 228 25 5 559 776 210837161 210836934 6.510000e-53 219.0
58 TraesCS1B01G033600 chr2B 80.822 292 39 9 496 775 102949226 102948940 3.030000e-51 213.0
59 TraesCS1B01G033600 chr2B 87.283 173 16 6 607 775 69009519 69009689 3.950000e-45 193.0
60 TraesCS1B01G033600 chr4B 91.731 774 63 1 1 773 580612209 580612982 0.000000e+00 1074.0
61 TraesCS1B01G033600 chr4B 88.861 790 69 9 1 773 42664551 42665338 0.000000e+00 953.0
62 TraesCS1B01G033600 chr4B 85.714 119 14 3 3755 3872 237899917 237899801 5.250000e-24 122.0
63 TraesCS1B01G033600 chr5B 90.724 787 55 10 1 773 653305814 653306596 0.000000e+00 1033.0
64 TraesCS1B01G033600 chr5B 93.287 581 33 4 1 578 415844445 415845022 0.000000e+00 852.0
65 TraesCS1B01G033600 chr5B 94.444 108 6 0 3762 3869 64722491 64722598 2.390000e-37 167.0
66 TraesCS1B01G033600 chr5B 88.430 121 9 5 3754 3872 237692415 237692298 1.450000e-29 141.0
67 TraesCS1B01G033600 chr5B 86.842 114 13 2 3753 3864 434694254 434694367 4.060000e-25 126.0
68 TraesCS1B01G033600 chr6B 89.695 786 68 8 1 773 1975942 1975157 0.000000e+00 990.0
69 TraesCS1B01G033600 chr6B 89.565 115 8 1 3762 3872 478757705 478757591 4.030000e-30 143.0
70 TraesCS1B01G033600 chr3B 89.330 806 53 10 1 775 51046434 51047237 0.000000e+00 981.0
71 TraesCS1B01G033600 chr3B 87.252 808 71 15 1 777 42769139 42769945 0.000000e+00 893.0
72 TraesCS1B01G033600 chr3B 91.304 115 6 1 3762 3872 487205437 487205551 1.860000e-33 154.0
73 TraesCS1B01G033600 chr3B 90.351 114 7 1 3763 3872 358663056 358662943 3.120000e-31 147.0
74 TraesCS1B01G033600 chrUn 92.083 240 17 1 3527 3764 261630582 261630343 1.720000e-88 337.0
75 TraesCS1B01G033600 chr7B 90.654 107 8 1 3768 3872 197490189 197490083 1.450000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G033600 chr1B 16399182 16403053 3871 False 2429.933333 7151 100.000000 1 3872 3 chr1B.!!$F6 3871
1 TraesCS1B01G033600 chr1B 16222866 16224897 2031 True 2521.000000 2521 89.260000 1735 3764 1 chr1B.!!$R1 2029
2 TraesCS1B01G033600 chr1B 23598202 23600091 1889 False 2483.000000 2483 90.571000 1735 3612 1 chr1B.!!$F1 1877
3 TraesCS1B01G033600 chr1B 39732976 39734836 1860 False 2211.000000 2211 88.223000 1735 3612 1 chr1B.!!$F2 1877
4 TraesCS1B01G033600 chr1B 615755493 615756162 669 False 952.000000 952 92.548000 1 661 1 chr1B.!!$F4 660
5 TraesCS1B01G033600 chr1B 39813033 39817000 3967 False 946.500000 2946 93.631750 955 3764 4 chr1B.!!$F8 2809
6 TraesCS1B01G033600 chr1B 637625848 637626637 789 False 933.000000 933 88.543000 1 773 1 chr1B.!!$F5 772
7 TraesCS1B01G033600 chr1B 23774888 23776892 2004 False 698.750000 1722 93.648500 955 2911 4 chr1B.!!$F7 1956
8 TraesCS1B01G033600 chr1D 10930559 10932574 2015 False 2732.000000 2732 91.371000 1773 3764 1 chr1D.!!$F2 1991
9 TraesCS1B01G033600 chr1D 10773031 10777203 4172 True 817.600000 2580 94.363600 772 3718 5 chr1D.!!$R2 2946
10 TraesCS1B01G033600 chr1D 10845853 10846671 818 False 710.000000 710 82.807000 2910 3741 1 chr1D.!!$F1 831
11 TraesCS1B01G033600 chr1D 10761435 10764216 2781 True 396.333333 832 84.381000 1091 3764 3 chr1D.!!$R1 2673
12 TraesCS1B01G033600 chr1D 10835579 10836497 918 False 313.900000 693 95.527000 773 1727 4 chr1D.!!$F3 954
13 TraesCS1B01G033600 chr1A 22759388 22761393 2005 True 2385.000000 2385 88.448000 1773 3764 1 chr1A.!!$R1 1991
14 TraesCS1B01G033600 chr1A 13272079 13274706 2627 False 1341.000000 2412 86.619000 1020 3764 2 chr1A.!!$F6 2744
15 TraesCS1B01G033600 chr1A 13213155 13215177 2022 False 1240.800000 2414 93.196000 1735 3764 2 chr1A.!!$F2 2029
16 TraesCS1B01G033600 chr1A 13229108 13231685 2577 False 919.000000 2383 86.620667 1091 3644 3 chr1A.!!$F3 2553
17 TraesCS1B01G033600 chr1A 13005838 13009813 3975 True 590.225000 1901 88.462250 1077 3167 4 chr1A.!!$R3 2090
18 TraesCS1B01G033600 chr1A 13250303 13250840 537 False 346.500000 556 95.259000 907 1383 2 chr1A.!!$F4 476
19 TraesCS1B01G033600 chr1A 13255599 13258030 2431 False 316.000000 560 89.962500 1374 3759 4 chr1A.!!$F5 2385
20 TraesCS1B01G033600 chr2B 47645250 47646035 785 True 1085.000000 1085 91.858000 1 772 1 chr2B.!!$R1 771
21 TraesCS1B01G033600 chr2B 728929640 728930409 769 True 824.000000 824 86.324000 1 776 1 chr2B.!!$R5 775
22 TraesCS1B01G033600 chr2B 491346054 491346592 538 True 652.000000 652 88.787000 242 775 1 chr2B.!!$R4 533
23 TraesCS1B01G033600 chr4B 580612209 580612982 773 False 1074.000000 1074 91.731000 1 773 1 chr4B.!!$F2 772
24 TraesCS1B01G033600 chr4B 42664551 42665338 787 False 953.000000 953 88.861000 1 773 1 chr4B.!!$F1 772
25 TraesCS1B01G033600 chr5B 653305814 653306596 782 False 1033.000000 1033 90.724000 1 773 1 chr5B.!!$F4 772
26 TraesCS1B01G033600 chr5B 415844445 415845022 577 False 852.000000 852 93.287000 1 578 1 chr5B.!!$F2 577
27 TraesCS1B01G033600 chr6B 1975157 1975942 785 True 990.000000 990 89.695000 1 773 1 chr6B.!!$R1 772
28 TraesCS1B01G033600 chr3B 51046434 51047237 803 False 981.000000 981 89.330000 1 775 1 chr3B.!!$F2 774
29 TraesCS1B01G033600 chr3B 42769139 42769945 806 False 893.000000 893 87.252000 1 777 1 chr3B.!!$F1 776

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 562 0.035598 TTGATTCCCCGCGAGAAACA 59.964 50.0 8.23 12.55 0.0 2.83 F
1209 1313 0.176680 ACTCCATCATCCAGCACGAC 59.823 55.0 0.00 0.00 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 5341 1.126846 GTTGCGAATCTCACTTCCGTG 59.873 52.381 0.0 0.0 42.59 4.94 R
2999 5961 5.341617 ACTAGTTCGCTACTCATTACTTGC 58.658 41.667 0.0 0.0 38.33 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
292 294 0.249573 TCGTCTCCGGAAAAACGCTT 60.250 50.000 22.22 0.00 35.22 4.68
325 328 2.003548 GGGAGTGGCTGGGGAGAAT 61.004 63.158 0.00 0.00 0.00 2.40
368 397 2.672996 GGTGGCACTCCAACGCAT 60.673 61.111 18.45 0.00 45.53 4.73
523 556 2.515991 GCCATTGATTCCCCGCGA 60.516 61.111 8.23 0.00 0.00 5.87
529 562 0.035598 TTGATTCCCCGCGAGAAACA 59.964 50.000 8.23 12.55 0.00 2.83
530 563 0.035598 TGATTCCCCGCGAGAAACAA 59.964 50.000 8.23 0.00 0.00 2.83
681 772 2.395360 CGAGCCGGCGAAAAATGGA 61.395 57.895 23.20 0.00 0.00 3.41
739 831 1.964373 GGCCGAAAAGTCGCCTTGA 60.964 57.895 0.00 0.00 46.28 3.02
747 839 1.640917 AAGTCGCCTTGAGGGTCTTA 58.359 50.000 0.00 0.00 35.57 2.10
836 933 9.997482 GAAACGATATTAAATTAAAGCTCACCA 57.003 29.630 0.00 0.00 0.00 4.17
884 981 4.274069 CGATTATGATGCACGAACAAAGG 58.726 43.478 0.00 0.00 0.00 3.11
949 1046 2.037144 GGGTTAGCCTCATCGACCTTA 58.963 52.381 0.00 0.00 34.45 2.69
1085 1189 1.822990 GTACGTGGAGAAGATGGTGGA 59.177 52.381 0.00 0.00 0.00 4.02
1209 1313 0.176680 ACTCCATCATCCAGCACGAC 59.823 55.000 0.00 0.00 0.00 4.34
1226 1330 4.760047 CCCCAAGGTCGACCGCAG 62.760 72.222 28.26 20.58 42.08 5.18
1291 2486 6.598064 TGACATCGATGAAGAGTGTAAGTAGA 59.402 38.462 31.33 0.00 0.00 2.59
1497 2820 3.474798 TGGGAACAGTAGGATGTCTCT 57.525 47.619 0.00 0.00 35.01 3.10
1498 2821 3.366396 TGGGAACAGTAGGATGTCTCTC 58.634 50.000 0.00 0.00 35.01 3.20
1501 2824 3.131400 GGAACAGTAGGATGTCTCTCACC 59.869 52.174 0.00 0.00 31.50 4.02
1502 2825 3.748645 ACAGTAGGATGTCTCTCACCT 57.251 47.619 0.00 0.00 34.06 4.00
1503 2826 3.360867 ACAGTAGGATGTCTCTCACCTG 58.639 50.000 0.00 0.00 32.67 4.00
1504 2827 3.245443 ACAGTAGGATGTCTCTCACCTGT 60.245 47.826 0.00 0.00 32.67 4.00
1505 2828 4.018324 ACAGTAGGATGTCTCTCACCTGTA 60.018 45.833 0.00 0.00 32.67 2.74
1506 2829 4.336993 CAGTAGGATGTCTCTCACCTGTAC 59.663 50.000 0.00 0.00 32.67 2.90
1507 2830 3.458044 AGGATGTCTCTCACCTGTACA 57.542 47.619 0.00 0.00 0.00 2.90
1508 2831 3.360867 AGGATGTCTCTCACCTGTACAG 58.639 50.000 16.34 16.34 0.00 2.74
1509 2832 3.093057 GGATGTCTCTCACCTGTACAGT 58.907 50.000 21.18 7.09 0.00 3.55
1510 2833 4.018324 AGGATGTCTCTCACCTGTACAGTA 60.018 45.833 21.18 5.95 0.00 2.74
1511 2834 4.890581 GGATGTCTCTCACCTGTACAGTAT 59.109 45.833 21.18 6.59 0.00 2.12
1512 2835 6.062749 GGATGTCTCTCACCTGTACAGTATA 58.937 44.000 21.18 5.26 0.00 1.47
1513 2836 6.546403 GGATGTCTCTCACCTGTACAGTATAA 59.454 42.308 21.18 3.57 0.00 0.98
1514 2837 7.068348 GGATGTCTCTCACCTGTACAGTATAAA 59.932 40.741 21.18 3.57 0.00 1.40
1515 2838 7.956328 TGTCTCTCACCTGTACAGTATAAAT 57.044 36.000 21.18 0.00 0.00 1.40
1516 2839 7.772166 TGTCTCTCACCTGTACAGTATAAATG 58.228 38.462 21.18 6.79 0.00 2.32
1517 2840 7.614192 TGTCTCTCACCTGTACAGTATAAATGA 59.386 37.037 21.18 12.67 0.00 2.57
1518 2841 8.467598 GTCTCTCACCTGTACAGTATAAATGAA 58.532 37.037 21.18 5.96 0.00 2.57
1519 2842 9.031537 TCTCTCACCTGTACAGTATAAATGAAA 57.968 33.333 21.18 2.17 0.00 2.69
1520 2843 9.653287 CTCTCACCTGTACAGTATAAATGAAAA 57.347 33.333 21.18 5.89 0.00 2.29
1538 2861 9.657419 AAATGAAAATTTCTGATGTATGGGAAC 57.343 29.630 7.29 0.00 0.00 3.62
1552 2875 3.474798 TGGGAACAGTAGGATGTCTCT 57.525 47.619 0.00 0.00 35.01 3.10
1553 2876 3.366396 TGGGAACAGTAGGATGTCTCTC 58.634 50.000 0.00 0.00 35.01 3.20
1554 2877 3.245622 TGGGAACAGTAGGATGTCTCTCA 60.246 47.826 0.00 0.00 35.01 3.27
1555 2878 3.383185 GGGAACAGTAGGATGTCTCTCAG 59.617 52.174 0.00 0.00 31.50 3.35
1556 2879 4.274147 GGAACAGTAGGATGTCTCTCAGA 58.726 47.826 0.00 0.00 31.50 3.27
1781 4582 1.567357 ACACAAACTGGGGCTGTTTT 58.433 45.000 0.00 0.00 34.26 2.43
2038 4854 1.402968 GATGATTGCCAGCGTGTCAAT 59.597 47.619 0.00 0.00 33.57 2.57
2045 4861 1.743772 GCCAGCGTGTCAATGAGGTAT 60.744 52.381 0.00 0.00 0.00 2.73
2048 4864 3.430236 CCAGCGTGTCAATGAGGTATACA 60.430 47.826 5.01 0.00 0.00 2.29
2049 4865 4.371786 CAGCGTGTCAATGAGGTATACAT 58.628 43.478 5.01 0.00 0.00 2.29
2051 4867 3.741344 GCGTGTCAATGAGGTATACATCC 59.259 47.826 14.55 0.00 0.00 3.51
2155 5011 3.508845 ATCTTAGTGCTGGTGGTTGTT 57.491 42.857 0.00 0.00 0.00 2.83
2379 5245 1.831652 AAGGAGTTCCAGACAGGCCG 61.832 60.000 0.00 0.00 38.89 6.13
2395 5261 1.653151 GCCGTTTAGCAAGGGTCTAG 58.347 55.000 0.00 0.00 39.74 2.43
2682 5548 3.453559 AGTTATCAAACTCCGGCGG 57.546 52.632 22.51 22.51 42.42 6.13
2882 5751 2.898705 CAGGCTGTAATCCTGTGACTC 58.101 52.381 6.28 0.00 44.62 3.36
2971 5926 9.433153 TGTAGTGATATCGTCCACTAAGTATAG 57.567 37.037 0.00 0.00 44.50 1.31
2999 5961 8.885494 TTGTTTTTAAGGAAACTGATGGATTG 57.115 30.769 4.79 0.00 42.68 2.67
3000 5962 6.928492 TGTTTTTAAGGAAACTGATGGATTGC 59.072 34.615 4.79 0.00 42.68 3.56
3024 5987 6.633634 GCAAGTAATGAGTAGCGAACTAGTAG 59.366 42.308 0.00 0.00 39.07 2.57
3408 6437 4.963276 TGTGGCTTCATTTTTAGATCCG 57.037 40.909 0.00 0.00 0.00 4.18
3477 6509 7.859325 TTGAGGATCTTTATAAAGGAAACGG 57.141 36.000 22.11 0.00 36.67 4.44
3481 6513 7.048512 AGGATCTTTATAAAGGAAACGGTCTG 58.951 38.462 22.11 0.00 36.67 3.51
3766 6867 7.715265 ACAGTATATGATTTTGCTCTTACCG 57.285 36.000 0.00 0.00 0.00 4.02
3767 6868 7.497595 ACAGTATATGATTTTGCTCTTACCGA 58.502 34.615 0.00 0.00 0.00 4.69
3769 6870 8.826710 CAGTATATGATTTTGCTCTTACCGAAA 58.173 33.333 0.00 0.00 0.00 3.46
3770 6871 9.391006 AGTATATGATTTTGCTCTTACCGAAAA 57.609 29.630 0.00 0.00 0.00 2.29
3771 6872 9.997482 GTATATGATTTTGCTCTTACCGAAAAA 57.003 29.630 0.00 0.00 0.00 1.94
3773 6874 5.768317 TGATTTTGCTCTTACCGAAAAAGG 58.232 37.500 0.00 0.00 37.30 3.11
3774 6875 3.636282 TTTGCTCTTACCGAAAAAGGC 57.364 42.857 0.00 0.00 33.69 4.35
3775 6876 2.561478 TGCTCTTACCGAAAAAGGCT 57.439 45.000 0.00 0.00 33.69 4.58
3776 6877 2.858745 TGCTCTTACCGAAAAAGGCTT 58.141 42.857 0.00 0.00 33.69 4.35
3778 6879 3.252458 TGCTCTTACCGAAAAAGGCTTTC 59.748 43.478 13.76 0.41 33.69 2.62
3780 6881 2.224784 TCTTACCGAAAAAGGCTTTCGC 59.775 45.455 13.76 7.41 46.89 4.70
3791 6892 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
3792 6893 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
3794 6895 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
3796 6897 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
3808 6909 6.371809 CTTTATAAATAAAGCAGACCGCCA 57.628 37.500 9.01 0.00 41.69 5.69
3809 6910 5.744666 TTATAAATAAAGCAGACCGCCAC 57.255 39.130 0.00 0.00 44.04 5.01
3812 6913 1.904287 ATAAAGCAGACCGCCACAAA 58.096 45.000 0.00 0.00 44.04 2.83
3813 6914 1.234821 TAAAGCAGACCGCCACAAAG 58.765 50.000 0.00 0.00 44.04 2.77
3814 6915 2.075426 AAAGCAGACCGCCACAAAGC 62.075 55.000 0.00 0.00 44.04 3.51
3815 6916 3.286751 GCAGACCGCCACAAAGCA 61.287 61.111 0.00 0.00 32.94 3.91
3816 6917 2.629656 GCAGACCGCCACAAAGCAT 61.630 57.895 0.00 0.00 32.94 3.79
3817 6918 1.305219 GCAGACCGCCACAAAGCATA 61.305 55.000 0.00 0.00 32.94 3.14
3818 6919 0.447801 CAGACCGCCACAAAGCATAC 59.552 55.000 0.00 0.00 0.00 2.39
3819 6920 0.036164 AGACCGCCACAAAGCATACA 59.964 50.000 0.00 0.00 0.00 2.29
3820 6921 0.878416 GACCGCCACAAAGCATACAA 59.122 50.000 0.00 0.00 0.00 2.41
3821 6922 0.596082 ACCGCCACAAAGCATACAAC 59.404 50.000 0.00 0.00 0.00 3.32
3822 6923 0.109319 CCGCCACAAAGCATACAACC 60.109 55.000 0.00 0.00 0.00 3.77
3823 6924 0.454285 CGCCACAAAGCATACAACCG 60.454 55.000 0.00 0.00 0.00 4.44
3824 6925 0.878416 GCCACAAAGCATACAACCGA 59.122 50.000 0.00 0.00 0.00 4.69
3825 6926 1.401018 GCCACAAAGCATACAACCGAC 60.401 52.381 0.00 0.00 0.00 4.79
3827 6928 0.515564 ACAAAGCATACAACCGACGC 59.484 50.000 0.00 0.00 0.00 5.19
3829 6930 1.069568 CAAAGCATACAACCGACGCAA 60.070 47.619 0.00 0.00 0.00 4.85
3832 6933 1.296056 GCATACAACCGACGCAAGGT 61.296 55.000 0.00 0.00 45.29 3.50
3833 6934 0.719465 CATACAACCGACGCAAGGTC 59.281 55.000 0.00 0.00 41.95 3.85
3834 6935 0.319083 ATACAACCGACGCAAGGTCA 59.681 50.000 0.00 0.00 46.42 4.02
3835 6936 0.598158 TACAACCGACGCAAGGTCAC 60.598 55.000 0.00 0.00 46.42 3.67
3836 6937 1.885388 CAACCGACGCAAGGTCACA 60.885 57.895 0.00 0.00 46.42 3.58
3837 6938 1.885850 AACCGACGCAAGGTCACAC 60.886 57.895 0.00 0.00 46.42 3.82
3839 6940 2.594962 CCGACGCAAGGTCACACAC 61.595 63.158 0.00 0.00 46.42 3.82
3841 6942 1.221466 CGACGCAAGGTCACACACAT 61.221 55.000 0.00 0.00 46.42 3.21
3842 6943 0.512952 GACGCAAGGTCACACACATC 59.487 55.000 0.00 0.00 45.36 3.06
3843 6944 0.179059 ACGCAAGGTCACACACATCA 60.179 50.000 0.00 0.00 46.39 3.07
3844 6945 0.235665 CGCAAGGTCACACACATCAC 59.764 55.000 0.00 0.00 0.00 3.06
3845 6946 0.593128 GCAAGGTCACACACATCACC 59.407 55.000 0.00 0.00 0.00 4.02
3846 6947 1.238439 CAAGGTCACACACATCACCC 58.762 55.000 0.00 0.00 0.00 4.61
3849 6950 0.670546 GGTCACACACATCACCCGAG 60.671 60.000 0.00 0.00 0.00 4.63
3850 6951 1.005037 TCACACACATCACCCGAGC 60.005 57.895 0.00 0.00 0.00 5.03
3851 6952 2.034879 CACACACATCACCCGAGCC 61.035 63.158 0.00 0.00 0.00 4.70
3852 6953 2.217038 ACACACATCACCCGAGCCT 61.217 57.895 0.00 0.00 0.00 4.58
3853 6954 1.448540 CACACATCACCCGAGCCTC 60.449 63.158 0.00 0.00 0.00 4.70
3854 6955 1.913262 ACACATCACCCGAGCCTCA 60.913 57.895 0.00 0.00 0.00 3.86
3855 6956 1.448540 CACATCACCCGAGCCTCAC 60.449 63.158 0.00 0.00 0.00 3.51
3856 6957 1.913262 ACATCACCCGAGCCTCACA 60.913 57.895 0.00 0.00 0.00 3.58
3857 6958 1.296392 CATCACCCGAGCCTCACAA 59.704 57.895 0.00 0.00 0.00 3.33
3858 6959 1.021390 CATCACCCGAGCCTCACAAC 61.021 60.000 0.00 0.00 0.00 3.32
3859 6960 1.480212 ATCACCCGAGCCTCACAACA 61.480 55.000 0.00 0.00 0.00 3.33
3870 8301 1.942657 CCTCACAACACAGTGAACAGG 59.057 52.381 7.81 1.27 46.90 4.00
3871 8302 2.632377 CTCACAACACAGTGAACAGGT 58.368 47.619 7.81 0.00 46.90 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
283 285 1.288752 CCGATGGCCAAGCGTTTTT 59.711 52.632 24.12 0.71 0.00 1.94
325 328 2.115480 CCCTCTCCCGCCGATCTA 59.885 66.667 0.00 0.00 0.00 1.98
368 397 3.344515 ACTATATATGGTCTCGCTCGCA 58.655 45.455 0.00 0.00 0.00 5.10
523 556 0.179040 TTCCCGACGCCTTTGTTTCT 60.179 50.000 0.00 0.00 0.00 2.52
624 715 0.607217 GAATCCAACCCGAAACCGGT 60.607 55.000 0.00 0.00 45.38 5.28
629 720 2.036006 CGGCGAATCCAACCCGAAA 61.036 57.895 0.00 0.00 43.20 3.46
739 831 3.056754 GCGCCCCCAATAAGACCCT 62.057 63.158 0.00 0.00 0.00 4.34
801 893 9.575783 TTAATTTAATATCGTTTCAGGTTTGGC 57.424 29.630 0.00 0.00 0.00 4.52
836 933 2.505364 CTTTGGGCTGGGCTAAGGCT 62.505 60.000 12.49 0.00 42.22 4.58
866 963 1.396648 CGCCTTTGTTCGTGCATCATA 59.603 47.619 0.00 0.00 0.00 2.15
884 981 3.606687 TGAGGGGAATAACTCTTTTCGC 58.393 45.455 0.00 0.00 34.84 4.70
1085 1189 2.123077 CCTCCTCCTCCGCATCCT 60.123 66.667 0.00 0.00 0.00 3.24
1130 1234 0.458716 CTTCTCCTTCCGCGTCTTCC 60.459 60.000 4.92 0.00 0.00 3.46
1209 1313 4.760047 CTGCGGTCGACCTTGGGG 62.760 72.222 30.92 16.74 38.88 4.96
1236 1340 4.249661 AGAAATCTCTGAGAAAGAACCGC 58.750 43.478 12.00 0.00 33.37 5.68
1291 2486 6.067217 ACATCCTACTGTTAGCCAAGAAAT 57.933 37.500 0.00 0.00 0.00 2.17
1416 2738 7.491683 GCGATTTATGTCGTTAAGTGATACTC 58.508 38.462 0.00 0.00 43.27 2.59
1418 2740 6.279592 CGCGATTTATGTCGTTAAGTGATAC 58.720 40.000 0.00 0.00 43.27 2.24
1494 2817 9.653287 TTTTCATTTATACTGTACAGGTGAGAG 57.347 33.333 26.12 10.67 0.00 3.20
1512 2835 9.657419 GTTCCCATACATCAGAAATTTTCATTT 57.343 29.630 11.53 0.00 35.12 2.32
1513 2836 8.814931 TGTTCCCATACATCAGAAATTTTCATT 58.185 29.630 11.53 0.00 0.00 2.57
1514 2837 8.365060 TGTTCCCATACATCAGAAATTTTCAT 57.635 30.769 11.53 0.00 0.00 2.57
1515 2838 7.451255 ACTGTTCCCATACATCAGAAATTTTCA 59.549 33.333 11.53 0.00 0.00 2.69
1516 2839 7.830739 ACTGTTCCCATACATCAGAAATTTTC 58.169 34.615 0.66 0.66 0.00 2.29
1517 2840 7.781324 ACTGTTCCCATACATCAGAAATTTT 57.219 32.000 0.00 0.00 0.00 1.82
1518 2841 7.557719 CCTACTGTTCCCATACATCAGAAATTT 59.442 37.037 0.00 0.00 0.00 1.82
1519 2842 7.056635 CCTACTGTTCCCATACATCAGAAATT 58.943 38.462 0.00 0.00 0.00 1.82
1520 2843 6.386927 TCCTACTGTTCCCATACATCAGAAAT 59.613 38.462 0.00 0.00 0.00 2.17
1521 2844 5.724370 TCCTACTGTTCCCATACATCAGAAA 59.276 40.000 0.00 0.00 0.00 2.52
1522 2845 5.277250 TCCTACTGTTCCCATACATCAGAA 58.723 41.667 0.00 0.00 0.00 3.02
1523 2846 4.878968 TCCTACTGTTCCCATACATCAGA 58.121 43.478 0.00 0.00 0.00 3.27
1524 2847 5.070981 ACATCCTACTGTTCCCATACATCAG 59.929 44.000 0.00 0.00 0.00 2.90
1525 2848 4.968719 ACATCCTACTGTTCCCATACATCA 59.031 41.667 0.00 0.00 0.00 3.07
1526 2849 5.305644 AGACATCCTACTGTTCCCATACATC 59.694 44.000 0.00 0.00 0.00 3.06
1527 2850 5.219739 AGACATCCTACTGTTCCCATACAT 58.780 41.667 0.00 0.00 0.00 2.29
1528 2851 4.620723 AGACATCCTACTGTTCCCATACA 58.379 43.478 0.00 0.00 0.00 2.29
1529 2852 4.896482 AGAGACATCCTACTGTTCCCATAC 59.104 45.833 0.00 0.00 0.00 2.39
1530 2853 5.141182 GAGAGACATCCTACTGTTCCCATA 58.859 45.833 0.00 0.00 0.00 2.74
1531 2854 3.964031 GAGAGACATCCTACTGTTCCCAT 59.036 47.826 0.00 0.00 0.00 4.00
1532 2855 3.245622 TGAGAGACATCCTACTGTTCCCA 60.246 47.826 0.00 0.00 0.00 4.37
1533 2856 3.366396 TGAGAGACATCCTACTGTTCCC 58.634 50.000 0.00 0.00 0.00 3.97
1534 2857 4.097286 GTCTGAGAGACATCCTACTGTTCC 59.903 50.000 0.00 0.00 44.45 3.62
1535 2858 5.243426 GTCTGAGAGACATCCTACTGTTC 57.757 47.826 0.00 0.00 44.45 3.18
1547 2870 2.790433 ACAGGTGAGAGTCTGAGAGAC 58.210 52.381 0.00 0.00 45.38 3.36
1548 2871 3.328050 TGTACAGGTGAGAGTCTGAGAGA 59.672 47.826 0.00 0.00 35.20 3.10
1549 2872 3.680490 TGTACAGGTGAGAGTCTGAGAG 58.320 50.000 0.00 0.00 35.20 3.20
1550 2873 3.790089 TGTACAGGTGAGAGTCTGAGA 57.210 47.619 0.00 0.00 35.20 3.27
1551 2874 4.438065 CGATTGTACAGGTGAGAGTCTGAG 60.438 50.000 0.00 0.00 35.20 3.35
1552 2875 3.440522 CGATTGTACAGGTGAGAGTCTGA 59.559 47.826 0.00 0.00 35.20 3.27
1553 2876 3.191581 ACGATTGTACAGGTGAGAGTCTG 59.808 47.826 0.00 0.00 37.07 3.51
1554 2877 3.422796 ACGATTGTACAGGTGAGAGTCT 58.577 45.455 0.00 0.00 0.00 3.24
1555 2878 3.440872 AGACGATTGTACAGGTGAGAGTC 59.559 47.826 0.00 1.25 0.00 3.36
1556 2879 3.422796 AGACGATTGTACAGGTGAGAGT 58.577 45.455 0.00 0.00 0.00 3.24
1728 4462 8.792830 TTTCTATCCCACTGAGTTAATTTCAG 57.207 34.615 14.80 14.80 45.89 3.02
1731 4465 7.561356 CCCATTTCTATCCCACTGAGTTAATTT 59.439 37.037 0.00 0.00 0.00 1.82
1732 4466 7.062957 CCCATTTCTATCCCACTGAGTTAATT 58.937 38.462 0.00 0.00 0.00 1.40
2038 4854 7.363031 ACTTAGAAGGAAGGATGTATACCTCA 58.637 38.462 9.92 0.00 36.67 3.86
2045 4861 6.436532 AGAACGAACTTAGAAGGAAGGATGTA 59.563 38.462 0.00 0.00 0.00 2.29
2048 4864 7.477945 TTAGAACGAACTTAGAAGGAAGGAT 57.522 36.000 0.00 0.00 0.00 3.24
2049 4865 6.906157 TTAGAACGAACTTAGAAGGAAGGA 57.094 37.500 0.00 0.00 0.00 3.36
2051 4867 6.472808 CCGATTAGAACGAACTTAGAAGGAAG 59.527 42.308 0.00 0.00 0.00 3.46
2379 5245 4.828829 TGCTTACTAGACCCTTGCTAAAC 58.171 43.478 0.00 0.00 0.00 2.01
2395 5261 1.668419 ACTCGGCCATCAATGCTTAC 58.332 50.000 2.24 0.00 0.00 2.34
2475 5341 1.126846 GTTGCGAATCTCACTTCCGTG 59.873 52.381 0.00 0.00 42.59 4.94
2682 5548 6.701145 TCCAGACAGATAGTAATGACACTC 57.299 41.667 0.00 0.00 0.00 3.51
2882 5751 9.653287 TCCATTACATCAGAACTAAGTTTACTG 57.347 33.333 0.00 0.00 0.00 2.74
2971 5926 8.710835 TCCATCAGTTTCCTTAAAAACAAAAC 57.289 30.769 5.74 0.00 40.77 2.43
2979 5934 6.267471 ACTTGCAATCCATCAGTTTCCTTAAA 59.733 34.615 0.00 0.00 0.00 1.52
2985 5940 6.855836 TCATTACTTGCAATCCATCAGTTTC 58.144 36.000 0.00 0.00 0.00 2.78
2999 5961 5.341617 ACTAGTTCGCTACTCATTACTTGC 58.658 41.667 0.00 0.00 38.33 4.01
3000 5962 7.133513 CCTACTAGTTCGCTACTCATTACTTG 58.866 42.308 0.00 0.00 38.33 3.16
3408 6437 2.288666 TGTCTCTTGAACAGGCAACAC 58.711 47.619 0.00 0.00 41.41 3.32
3466 6498 3.135994 GTCTTGCAGACCGTTTCCTTTA 58.864 45.455 5.33 0.00 39.28 1.85
3477 6509 0.376152 CGGCATGATGTCTTGCAGAC 59.624 55.000 18.67 8.75 45.46 3.51
3481 6513 2.332362 CTGGCGGCATGATGTCTTGC 62.332 60.000 13.85 11.24 43.68 4.01
3774 6875 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
3775 6876 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
3776 6877 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
3788 6889 4.771903 TGTGGCGGTCTGCTTTATTTATA 58.228 39.130 3.10 0.00 45.43 0.98
3789 6890 3.616219 TGTGGCGGTCTGCTTTATTTAT 58.384 40.909 3.10 0.00 45.43 1.40
3791 6892 1.904287 TGTGGCGGTCTGCTTTATTT 58.096 45.000 3.10 0.00 45.43 1.40
3792 6893 1.904287 TTGTGGCGGTCTGCTTTATT 58.096 45.000 3.10 0.00 45.43 1.40
3794 6895 1.234821 CTTTGTGGCGGTCTGCTTTA 58.765 50.000 3.10 0.00 45.43 1.85
3796 6897 2.555547 GCTTTGTGGCGGTCTGCTT 61.556 57.895 3.10 0.00 45.43 3.91
3798 6899 1.305219 TATGCTTTGTGGCGGTCTGC 61.305 55.000 0.00 0.00 45.38 4.26
3799 6900 0.447801 GTATGCTTTGTGGCGGTCTG 59.552 55.000 0.00 0.00 34.52 3.51
3800 6901 0.036164 TGTATGCTTTGTGGCGGTCT 59.964 50.000 0.00 0.00 34.52 3.85
3801 6902 0.878416 TTGTATGCTTTGTGGCGGTC 59.122 50.000 0.00 0.00 34.52 4.79
3803 6904 0.109319 GGTTGTATGCTTTGTGGCGG 60.109 55.000 0.00 0.00 34.52 6.13
3804 6905 0.454285 CGGTTGTATGCTTTGTGGCG 60.454 55.000 0.00 0.00 34.52 5.69
3807 6908 1.724654 GCGTCGGTTGTATGCTTTGTG 60.725 52.381 0.00 0.00 0.00 3.33
3808 6909 0.515564 GCGTCGGTTGTATGCTTTGT 59.484 50.000 0.00 0.00 0.00 2.83
3809 6910 0.515127 TGCGTCGGTTGTATGCTTTG 59.485 50.000 0.00 0.00 0.00 2.77
3812 6913 1.019278 CCTTGCGTCGGTTGTATGCT 61.019 55.000 0.00 0.00 0.00 3.79
3813 6914 1.296056 ACCTTGCGTCGGTTGTATGC 61.296 55.000 0.00 0.00 0.00 3.14
3814 6915 0.719465 GACCTTGCGTCGGTTGTATG 59.281 55.000 0.00 0.00 34.19 2.39
3815 6916 0.319083 TGACCTTGCGTCGGTTGTAT 59.681 50.000 0.00 0.00 45.23 2.29
3816 6917 0.598158 GTGACCTTGCGTCGGTTGTA 60.598 55.000 0.00 0.00 45.23 2.41
3817 6918 1.885850 GTGACCTTGCGTCGGTTGT 60.886 57.895 0.00 0.00 45.23 3.32
3818 6919 1.885388 TGTGACCTTGCGTCGGTTG 60.885 57.895 0.00 0.00 45.23 3.77
3819 6920 1.885850 GTGTGACCTTGCGTCGGTT 60.886 57.895 0.00 0.00 45.23 4.44
3820 6921 2.279918 GTGTGACCTTGCGTCGGT 60.280 61.111 0.00 0.00 45.23 4.69
3821 6922 2.279851 TGTGTGACCTTGCGTCGG 60.280 61.111 0.00 0.00 45.23 4.79
3822 6923 1.221466 ATGTGTGTGACCTTGCGTCG 61.221 55.000 0.00 0.00 45.23 5.12
3823 6924 0.512952 GATGTGTGTGACCTTGCGTC 59.487 55.000 0.00 0.00 42.33 5.19
3824 6925 0.179059 TGATGTGTGTGACCTTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
3825 6926 0.235665 GTGATGTGTGTGACCTTGCG 59.764 55.000 0.00 0.00 0.00 4.85
3827 6928 1.238439 GGGTGATGTGTGTGACCTTG 58.762 55.000 0.00 0.00 0.00 3.61
3829 6930 1.118965 TCGGGTGATGTGTGTGACCT 61.119 55.000 0.00 0.00 0.00 3.85
3830 6931 0.670546 CTCGGGTGATGTGTGTGACC 60.671 60.000 0.00 0.00 0.00 4.02
3832 6933 1.005037 GCTCGGGTGATGTGTGTGA 60.005 57.895 0.00 0.00 0.00 3.58
3833 6934 2.034879 GGCTCGGGTGATGTGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
3834 6935 2.172483 GAGGCTCGGGTGATGTGTGT 62.172 60.000 0.00 0.00 0.00 3.72
3835 6936 1.448540 GAGGCTCGGGTGATGTGTG 60.449 63.158 0.00 0.00 0.00 3.82
3836 6937 1.913262 TGAGGCTCGGGTGATGTGT 60.913 57.895 10.42 0.00 0.00 3.72
3837 6938 1.448540 GTGAGGCTCGGGTGATGTG 60.449 63.158 10.42 0.00 0.00 3.21
3839 6940 1.021390 GTTGTGAGGCTCGGGTGATG 61.021 60.000 10.42 0.00 0.00 3.07
3841 6942 2.137528 TGTTGTGAGGCTCGGGTGA 61.138 57.895 10.42 0.00 0.00 4.02
3842 6943 1.961277 GTGTTGTGAGGCTCGGGTG 60.961 63.158 10.42 0.00 0.00 4.61
3843 6944 2.383245 CTGTGTTGTGAGGCTCGGGT 62.383 60.000 10.42 0.00 0.00 5.28
3844 6945 1.669115 CTGTGTTGTGAGGCTCGGG 60.669 63.158 10.42 0.00 0.00 5.14
3845 6946 1.069765 ACTGTGTTGTGAGGCTCGG 59.930 57.895 10.42 0.00 0.00 4.63
3846 6947 0.249447 TCACTGTGTTGTGAGGCTCG 60.249 55.000 10.42 0.00 41.43 5.03
3849 6950 1.331756 CTGTTCACTGTGTTGTGAGGC 59.668 52.381 7.79 0.00 46.02 4.70
3850 6951 1.942657 CCTGTTCACTGTGTTGTGAGG 59.057 52.381 7.79 4.11 46.02 3.86
3851 6952 2.632377 ACCTGTTCACTGTGTTGTGAG 58.368 47.619 7.79 0.00 46.02 3.51
3852 6953 2.779755 ACCTGTTCACTGTGTTGTGA 57.220 45.000 7.79 0.00 44.17 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.