Multiple sequence alignment - TraesCS1B01G033300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G033300 chr1B 100.000 3918 0 0 1 3918 16226673 16222756 0.000000e+00 7236.0
1 TraesCS1B01G033300 chr1B 93.195 2748 111 32 938 3659 23597394 23600091 0.000000e+00 3969.0
2 TraesCS1B01G033300 chr1B 93.159 2748 111 33 938 3659 23896170 23898866 0.000000e+00 3962.0
3 TraesCS1B01G033300 chr1B 92.444 2144 127 18 1522 3659 39732722 39734836 0.000000e+00 3029.0
4 TraesCS1B01G033300 chr1B 87.903 2108 197 40 1656 3727 39814791 39816876 0.000000e+00 2427.0
5 TraesCS1B01G033300 chr1B 91.980 586 28 6 908 1489 39806065 39806635 0.000000e+00 804.0
6 TraesCS1B01G033300 chr1B 82.787 366 54 8 941 1302 39732071 39732431 6.320000e-83 318.0
7 TraesCS1B01G033300 chr1B 91.971 137 8 3 1392 1527 39732475 39732609 5.170000e-44 189.0
8 TraesCS1B01G033300 chr1B 96.104 77 2 1 864 939 23597272 23597348 1.480000e-24 124.0
9 TraesCS1B01G033300 chr1B 96.104 77 2 1 864 939 23896048 23896124 1.480000e-24 124.0
10 TraesCS1B01G033300 chr1A 91.375 2690 158 33 1030 3690 13229041 13231685 0.000000e+00 3615.0
11 TraesCS1B01G033300 chr1A 92.501 2547 131 32 1392 3918 13212777 13215283 0.000000e+00 3591.0
12 TraesCS1B01G033300 chr1A 91.341 2125 119 28 1104 3201 13009792 13007706 0.000000e+00 2844.0
13 TraesCS1B01G033300 chr1A 90.754 2055 136 26 908 2942 22791346 22789326 0.000000e+00 2693.0
14 TraesCS1B01G033300 chr1A 85.077 2352 218 48 1610 3893 22761589 22759303 0.000000e+00 2276.0
15 TraesCS1B01G033300 chr1A 96.316 570 19 2 1 570 514937748 514938315 0.000000e+00 935.0
16 TraesCS1B01G033300 chr1A 96.316 570 19 2 1 570 515194447 515195014 0.000000e+00 935.0
17 TraesCS1B01G033300 chr1A 97.191 534 11 2 3387 3918 13007696 13007165 0.000000e+00 900.0
18 TraesCS1B01G033300 chr1A 82.591 988 112 35 2216 3170 13233253 13234213 0.000000e+00 817.0
19 TraesCS1B01G033300 chr1A 86.438 671 56 11 2956 3600 13257203 13257864 0.000000e+00 702.0
20 TraesCS1B01G033300 chr1A 85.370 663 57 18 2974 3619 22778864 22778225 0.000000e+00 651.0
21 TraesCS1B01G033300 chr1A 93.140 379 18 5 938 1315 13212371 13212742 2.060000e-152 549.0
22 TraesCS1B01G033300 chr1A 96.250 80 2 1 861 939 13212246 13212325 3.180000e-26 130.0
23 TraesCS1B01G033300 chr1D 94.605 2280 88 12 1655 3918 10775143 10772883 0.000000e+00 3496.0
24 TraesCS1B01G033300 chr1D 90.812 2155 135 41 815 2936 10843624 10845748 0.000000e+00 2824.0
25 TraesCS1B01G033300 chr1D 87.725 2330 207 40 1610 3893 10930363 10932659 0.000000e+00 2645.0
26 TraesCS1B01G033300 chr1D 89.055 2010 155 38 943 2942 10764355 10762401 0.000000e+00 2433.0
27 TraesCS1B01G033300 chr1D 92.363 982 53 10 2956 3918 10762302 10761324 0.000000e+00 1378.0
28 TraesCS1B01G033300 chr1D 85.663 830 68 23 2956 3763 10845853 10846653 0.000000e+00 826.0
29 TraesCS1B01G033300 chr1D 95.699 372 16 0 1 372 192434490 192434861 2.010000e-167 599.0
30 TraesCS1B01G033300 chrUn 91.864 762 33 5 1 762 31637720 31638452 0.000000e+00 1037.0
31 TraesCS1B01G033300 chrUn 86.970 330 31 9 3571 3893 261630582 261630258 1.030000e-95 361.0
32 TraesCS1B01G033300 chr2B 96.263 562 21 0 244 805 523790959 523791520 0.000000e+00 922.0
33 TraesCS1B01G033300 chr2B 87.529 433 31 4 330 762 28233949 28233540 2.740000e-131 479.0
34 TraesCS1B01G033300 chr2B 93.878 49 3 0 757 805 657935909 657935957 1.510000e-09 75.0
35 TraesCS1B01G033300 chr6D 96.237 372 13 1 1 372 382556635 382556265 3.350000e-170 608.0
36 TraesCS1B01G033300 chr6D 95.699 372 16 0 1 372 5881749 5881378 2.010000e-167 599.0
37 TraesCS1B01G033300 chr5B 95.161 372 18 0 1 372 382948245 382947874 4.360000e-164 588.0
38 TraesCS1B01G033300 chr7D 94.355 372 21 0 1 372 235471186 235471557 4.390000e-159 571.0
39 TraesCS1B01G033300 chr3D 96.933 326 9 1 47 372 519173689 519174013 2.660000e-151 545.0
40 TraesCS1B01G033300 chr7A 87.760 433 30 4 330 762 101414754 101415163 5.890000e-133 484.0
41 TraesCS1B01G033300 chr6A 87.760 433 30 4 330 762 580322952 580322543 5.890000e-133 484.0
42 TraesCS1B01G033300 chr6A 87.529 433 31 4 330 762 410567885 410568294 2.740000e-131 479.0
43 TraesCS1B01G033300 chr6A 87.298 433 32 4 330 762 410572136 410572545 1.270000e-129 473.0
44 TraesCS1B01G033300 chr6A 87.067 433 33 4 330 762 410570721 410571130 5.930000e-128 468.0
45 TraesCS1B01G033300 chr4A 87.760 433 30 4 330 762 740826841 740827250 5.890000e-133 484.0
46 TraesCS1B01G033300 chr5A 87.529 433 31 4 330 762 479000634 479001043 2.740000e-131 479.0
47 TraesCS1B01G033300 chr6B 97.674 43 1 0 763 805 199957406 199957364 1.510000e-09 75.0
48 TraesCS1B01G033300 chr2D 95.349 43 2 0 763 805 285068645 285068687 7.020000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G033300 chr1B 16222756 16226673 3917 True 7236.000000 7236 100.000000 1 3918 1 chr1B.!!$R1 3917
1 TraesCS1B01G033300 chr1B 39814791 39816876 2085 False 2427.000000 2427 87.903000 1656 3727 1 chr1B.!!$F2 2071
2 TraesCS1B01G033300 chr1B 23597272 23600091 2819 False 2046.500000 3969 94.649500 864 3659 2 chr1B.!!$F3 2795
3 TraesCS1B01G033300 chr1B 23896048 23898866 2818 False 2043.000000 3962 94.631500 864 3659 2 chr1B.!!$F4 2795
4 TraesCS1B01G033300 chr1B 39732071 39734836 2765 False 1178.666667 3029 89.067333 941 3659 3 chr1B.!!$F5 2718
5 TraesCS1B01G033300 chr1B 39806065 39806635 570 False 804.000000 804 91.980000 908 1489 1 chr1B.!!$F1 581
6 TraesCS1B01G033300 chr1A 22789326 22791346 2020 True 2693.000000 2693 90.754000 908 2942 1 chr1A.!!$R3 2034
7 TraesCS1B01G033300 chr1A 22759303 22761589 2286 True 2276.000000 2276 85.077000 1610 3893 1 chr1A.!!$R1 2283
8 TraesCS1B01G033300 chr1A 13229041 13234213 5172 False 2216.000000 3615 86.983000 1030 3690 2 chr1A.!!$F5 2660
9 TraesCS1B01G033300 chr1A 13007165 13009792 2627 True 1872.000000 2844 94.266000 1104 3918 2 chr1A.!!$R4 2814
10 TraesCS1B01G033300 chr1A 13212246 13215283 3037 False 1423.333333 3591 93.963667 861 3918 3 chr1A.!!$F4 3057
11 TraesCS1B01G033300 chr1A 514937748 514938315 567 False 935.000000 935 96.316000 1 570 1 chr1A.!!$F2 569
12 TraesCS1B01G033300 chr1A 515194447 515195014 567 False 935.000000 935 96.316000 1 570 1 chr1A.!!$F3 569
13 TraesCS1B01G033300 chr1A 13257203 13257864 661 False 702.000000 702 86.438000 2956 3600 1 chr1A.!!$F1 644
14 TraesCS1B01G033300 chr1A 22778225 22778864 639 True 651.000000 651 85.370000 2974 3619 1 chr1A.!!$R2 645
15 TraesCS1B01G033300 chr1D 10772883 10775143 2260 True 3496.000000 3496 94.605000 1655 3918 1 chr1D.!!$R1 2263
16 TraesCS1B01G033300 chr1D 10930363 10932659 2296 False 2645.000000 2645 87.725000 1610 3893 1 chr1D.!!$F1 2283
17 TraesCS1B01G033300 chr1D 10761324 10764355 3031 True 1905.500000 2433 90.709000 943 3918 2 chr1D.!!$R2 2975
18 TraesCS1B01G033300 chr1D 10843624 10846653 3029 False 1825.000000 2824 88.237500 815 3763 2 chr1D.!!$F3 2948
19 TraesCS1B01G033300 chrUn 31637720 31638452 732 False 1037.000000 1037 91.864000 1 762 1 chrUn.!!$F1 761
20 TraesCS1B01G033300 chr2B 523790959 523791520 561 False 922.000000 922 96.263000 244 805 1 chr2B.!!$F1 561
21 TraesCS1B01G033300 chr6A 410567885 410572545 4660 False 473.333333 479 87.298000 330 762 3 chr6A.!!$F1 432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 3281 0.033920 TCTACGCGCGTATAGAGGGA 59.966 55.0 39.19 28.53 36.49 4.20 F
774 3283 0.033920 TACGCGCGTATAGAGGGAGA 59.966 55.0 36.55 14.78 36.49 3.71 F
800 3309 0.107017 AATGGCTCGGGATTGAGGTG 60.107 55.0 0.00 0.00 36.47 4.00 F
807 3316 0.179056 CGGGATTGAGGTGCGGTATT 60.179 55.0 0.00 0.00 0.00 1.89 F
2203 5095 0.466543 TTAGTGCTGGTGGTTGTCGT 59.533 50.0 0.00 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 4642 0.237498 GCCACTGAGTTAAACCACGC 59.763 55.000 0.00 0.0 0.00 5.34 R
1873 4748 1.135094 ATCGCATTGGAGGGACAGAT 58.865 50.000 0.00 0.0 33.02 2.90 R
2419 5321 1.359130 AGACCCTTGCTAAATGGCCTT 59.641 47.619 3.32 0.0 0.00 4.35 R
2671 5573 2.745100 ACGCCATCTGCTGTGCTG 60.745 61.111 0.00 0.0 38.05 4.41 R
3228 6667 0.037882 ACAGACGTGACCATGAGCAG 60.038 55.000 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.922692 GCAATACAGTACAAAGCATGCAAA 59.077 37.500 21.98 0.00 0.00 3.68
77 78 0.254178 CAGTGAATCACAGGGGGAGG 59.746 60.000 16.38 0.00 36.74 4.30
160 161 2.264480 CCGCCATCGACAACTCCA 59.736 61.111 0.00 0.00 38.10 3.86
194 195 4.947147 AGCTTTCGCCGGCAACCA 62.947 61.111 28.98 5.78 36.60 3.67
329 330 0.597118 GTAGCAGCAGATCGAGCCAG 60.597 60.000 0.00 0.00 0.00 4.85
330 331 0.753111 TAGCAGCAGATCGAGCCAGA 60.753 55.000 0.00 0.00 0.00 3.86
331 332 1.592131 GCAGCAGATCGAGCCAGAG 60.592 63.158 0.00 0.00 0.00 3.35
332 333 2.014064 GCAGCAGATCGAGCCAGAGA 62.014 60.000 0.00 0.00 0.00 3.10
333 334 0.459078 CAGCAGATCGAGCCAGAGAA 59.541 55.000 0.00 0.00 0.00 2.87
368 2876 3.903282 CCATGCCCAAATCCGCGG 61.903 66.667 22.12 22.12 0.00 6.46
658 3167 3.083349 CCCACGCCCTCCAGATCA 61.083 66.667 0.00 0.00 0.00 2.92
674 3183 2.898920 ATCAATGCCCTGCTCCACGG 62.899 60.000 0.00 0.00 0.00 4.94
695 3204 2.281761 CCTCCACCACACAGCCAC 60.282 66.667 0.00 0.00 0.00 5.01
697 3206 3.157949 TCCACCACACAGCCACGA 61.158 61.111 0.00 0.00 0.00 4.35
698 3207 2.972505 CCACCACACAGCCACGAC 60.973 66.667 0.00 0.00 0.00 4.34
699 3208 2.203001 CACCACACAGCCACGACA 60.203 61.111 0.00 0.00 0.00 4.35
703 3212 1.597854 CACACAGCCACGACACCAT 60.598 57.895 0.00 0.00 0.00 3.55
711 3220 3.717294 ACGACACCATGCCCTCCC 61.717 66.667 0.00 0.00 0.00 4.30
763 3272 4.415332 CCACACCTCTACGCGCGT 62.415 66.667 39.05 39.05 0.00 6.01
764 3273 2.481919 CACACCTCTACGCGCGTA 59.518 61.111 37.09 37.09 0.00 4.42
765 3274 1.063649 CACACCTCTACGCGCGTAT 59.936 57.895 39.19 24.11 0.00 3.06
767 3276 0.585357 ACACCTCTACGCGCGTATAG 59.415 55.000 39.19 36.85 0.00 1.31
768 3277 0.863799 CACCTCTACGCGCGTATAGA 59.136 55.000 40.13 34.44 29.62 1.98
770 3279 3.951349 CTCTACGCGCGTATAGAGG 57.049 57.895 37.46 28.41 40.46 3.69
772 3281 0.033920 TCTACGCGCGTATAGAGGGA 59.966 55.000 39.19 28.53 36.49 4.20
773 3282 0.443088 CTACGCGCGTATAGAGGGAG 59.557 60.000 39.19 24.74 36.49 4.30
774 3283 0.033920 TACGCGCGTATAGAGGGAGA 59.966 55.000 36.55 14.78 36.49 3.71
775 3284 0.816825 ACGCGCGTATAGAGGGAGAA 60.817 55.000 37.08 0.00 36.49 2.87
776 3285 0.309922 CGCGCGTATAGAGGGAGAAA 59.690 55.000 24.19 0.00 34.66 2.52
777 3286 1.268896 CGCGCGTATAGAGGGAGAAAA 60.269 52.381 24.19 0.00 34.66 2.29
778 3287 2.395654 GCGCGTATAGAGGGAGAAAAG 58.604 52.381 8.43 0.00 0.00 2.27
779 3288 2.862921 GCGCGTATAGAGGGAGAAAAGG 60.863 54.545 8.43 0.00 0.00 3.11
780 3289 2.621998 CGCGTATAGAGGGAGAAAAGGA 59.378 50.000 0.00 0.00 0.00 3.36
781 3290 3.067742 CGCGTATAGAGGGAGAAAAGGAA 59.932 47.826 0.00 0.00 0.00 3.36
782 3291 4.441079 CGCGTATAGAGGGAGAAAAGGAAA 60.441 45.833 0.00 0.00 0.00 3.13
783 3292 5.612351 GCGTATAGAGGGAGAAAAGGAAAT 58.388 41.667 0.00 0.00 0.00 2.17
784 3293 5.467063 GCGTATAGAGGGAGAAAAGGAAATG 59.533 44.000 0.00 0.00 0.00 2.32
786 3295 3.093057 AGAGGGAGAAAAGGAAATGGC 57.907 47.619 0.00 0.00 0.00 4.40
787 3296 2.651841 AGAGGGAGAAAAGGAAATGGCT 59.348 45.455 0.00 0.00 0.00 4.75
789 3298 1.745653 GGGAGAAAAGGAAATGGCTCG 59.254 52.381 0.00 0.00 0.00 5.03
790 3299 1.745653 GGAGAAAAGGAAATGGCTCGG 59.254 52.381 0.00 0.00 0.00 4.63
791 3300 1.745653 GAGAAAAGGAAATGGCTCGGG 59.254 52.381 0.00 0.00 0.00 5.14
792 3301 1.354368 AGAAAAGGAAATGGCTCGGGA 59.646 47.619 0.00 0.00 0.00 5.14
793 3302 2.024941 AGAAAAGGAAATGGCTCGGGAT 60.025 45.455 0.00 0.00 0.00 3.85
794 3303 2.532250 AAAGGAAATGGCTCGGGATT 57.468 45.000 0.00 0.00 0.00 3.01
795 3304 1.767759 AAGGAAATGGCTCGGGATTG 58.232 50.000 0.00 0.00 0.00 2.67
796 3305 0.918983 AGGAAATGGCTCGGGATTGA 59.081 50.000 0.00 0.00 0.00 2.57
797 3306 1.133976 AGGAAATGGCTCGGGATTGAG 60.134 52.381 0.00 0.00 39.05 3.02
798 3307 1.312815 GAAATGGCTCGGGATTGAGG 58.687 55.000 0.00 0.00 36.47 3.86
799 3308 0.625849 AAATGGCTCGGGATTGAGGT 59.374 50.000 0.00 0.00 36.47 3.85
800 3309 0.107017 AATGGCTCGGGATTGAGGTG 60.107 55.000 0.00 0.00 36.47 4.00
802 3311 2.892425 GCTCGGGATTGAGGTGCG 60.892 66.667 0.00 0.00 36.47 5.34
803 3312 2.202932 CTCGGGATTGAGGTGCGG 60.203 66.667 0.00 0.00 32.18 5.69
804 3313 3.000819 TCGGGATTGAGGTGCGGT 61.001 61.111 0.00 0.00 0.00 5.68
805 3314 1.672854 CTCGGGATTGAGGTGCGGTA 61.673 60.000 0.00 0.00 32.18 4.02
806 3315 1.046472 TCGGGATTGAGGTGCGGTAT 61.046 55.000 0.00 0.00 0.00 2.73
807 3316 0.179056 CGGGATTGAGGTGCGGTATT 60.179 55.000 0.00 0.00 0.00 1.89
808 3317 1.308998 GGGATTGAGGTGCGGTATTG 58.691 55.000 0.00 0.00 0.00 1.90
809 3318 1.408266 GGGATTGAGGTGCGGTATTGT 60.408 52.381 0.00 0.00 0.00 2.71
810 3319 2.158871 GGGATTGAGGTGCGGTATTGTA 60.159 50.000 0.00 0.00 0.00 2.41
811 3320 2.870411 GGATTGAGGTGCGGTATTGTAC 59.130 50.000 0.00 0.00 0.00 2.90
812 3321 3.527533 GATTGAGGTGCGGTATTGTACA 58.472 45.455 0.00 0.00 0.00 2.90
813 3322 3.620427 TTGAGGTGCGGTATTGTACAT 57.380 42.857 0.00 0.00 0.00 2.29
1388 4109 4.108570 TGTATGGGTATGGGAACTCAACT 58.891 43.478 0.00 0.00 32.47 3.16
1389 4110 5.282129 TGTATGGGTATGGGAACTCAACTA 58.718 41.667 0.00 0.00 32.47 2.24
1390 4111 5.365605 TGTATGGGTATGGGAACTCAACTAG 59.634 44.000 0.00 0.00 32.47 2.57
1414 4141 3.622163 ACGTTACAGTAGGATGTCTCTCG 59.378 47.826 0.00 0.00 34.56 4.04
1564 4429 5.453567 AACTCACTGATTTGGCTAAAACC 57.546 39.130 0.00 0.00 0.00 3.27
1805 4678 4.035208 CAGTGGCATATAAACGGGAAGAAC 59.965 45.833 0.00 0.00 0.00 3.01
2203 5095 0.466543 TTAGTGCTGGTGGTTGTCGT 59.533 50.000 0.00 0.00 0.00 4.34
2254 5153 3.155093 AGCTTTTATGCCATGCTTTCG 57.845 42.857 0.00 0.00 0.00 3.46
2419 5321 2.639839 CAGGGAAGAAGGAGTTCCAGAA 59.360 50.000 0.28 0.00 44.75 3.02
2653 5555 1.664016 CGCAAGCTGGACAATGAACAC 60.664 52.381 0.00 0.00 0.00 3.32
2799 6108 1.076777 AGGCTGCTGGTGTTTGTGT 60.077 52.632 0.00 0.00 0.00 3.72
2814 6123 3.495670 TTGTGTTGAACGAACCTTTGG 57.504 42.857 0.00 0.00 33.07 3.28
2857 6166 8.375506 ACTGGTGTAGATGAAGAGAAAATTACA 58.624 33.333 0.00 0.00 0.00 2.41
3134 6556 9.081204 TGGCATAATTAATGAAGATTAGTGCAT 57.919 29.630 0.00 0.00 37.86 3.96
3228 6667 9.950680 CCATATTTATCTGTGGTTTGTATTGAC 57.049 33.333 0.00 0.00 0.00 3.18
3370 6823 1.216710 GAGGAAGGCAGGAGACACG 59.783 63.158 0.00 0.00 0.00 4.49
3392 6845 5.989168 ACGTTCATGTTATCAGTTCTGAACA 59.011 36.000 21.50 7.96 38.60 3.18
3393 6846 6.073765 ACGTTCATGTTATCAGTTCTGAACAC 60.074 38.462 21.50 11.29 38.60 3.32
3394 6847 6.073819 CGTTCATGTTATCAGTTCTGAACACA 60.074 38.462 21.50 16.06 38.60 3.72
3395 6848 7.360353 CGTTCATGTTATCAGTTCTGAACACAT 60.360 37.037 21.50 17.39 38.60 3.21
3396 6849 7.368480 TCATGTTATCAGTTCTGAACACATG 57.632 36.000 27.75 27.75 40.25 3.21
3398 6851 7.445096 TCATGTTATCAGTTCTGAACACATGTT 59.555 33.333 29.79 17.07 40.05 2.71
3652 7139 7.101700 GGATATGCTGATTGATGACATCTGTA 58.898 38.462 16.25 2.94 0.00 2.74
3703 7195 5.258051 ACCTAGGGCATTCGTTTATTTTCA 58.742 37.500 14.81 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.256920 CTGAAAACCTGATTCGATCCAGT 58.743 43.478 11.90 0.97 0.00 4.00
77 78 2.757099 CCTTCCACTGCCCCATGC 60.757 66.667 0.00 0.00 41.77 4.06
160 161 3.241530 TGAACTCCGGCAGTGGCT 61.242 61.111 15.48 0.00 40.87 4.75
329 330 3.774702 GCGTCGTGGCCGTTTCTC 61.775 66.667 0.00 0.00 35.01 2.87
462 2971 4.101448 GGCGTCCCTGCTGATGGT 62.101 66.667 0.00 0.00 34.52 3.55
695 3204 4.838152 CGGGAGGGCATGGTGTCG 62.838 72.222 0.00 0.00 0.00 4.35
752 3261 0.443088 CCCTCTATACGCGCGTAGAG 59.557 60.000 42.97 42.97 42.19 2.43
762 3271 5.765677 GCCATTTCCTTTTCTCCCTCTATAC 59.234 44.000 0.00 0.00 0.00 1.47
763 3272 5.672194 AGCCATTTCCTTTTCTCCCTCTATA 59.328 40.000 0.00 0.00 0.00 1.31
764 3273 4.480166 AGCCATTTCCTTTTCTCCCTCTAT 59.520 41.667 0.00 0.00 0.00 1.98
765 3274 3.852578 AGCCATTTCCTTTTCTCCCTCTA 59.147 43.478 0.00 0.00 0.00 2.43
767 3276 3.020274 GAGCCATTTCCTTTTCTCCCTC 58.980 50.000 0.00 0.00 0.00 4.30
768 3277 2.619074 CGAGCCATTTCCTTTTCTCCCT 60.619 50.000 0.00 0.00 0.00 4.20
770 3279 1.745653 CCGAGCCATTTCCTTTTCTCC 59.254 52.381 0.00 0.00 0.00 3.71
772 3281 1.354368 TCCCGAGCCATTTCCTTTTCT 59.646 47.619 0.00 0.00 0.00 2.52
773 3282 1.834188 TCCCGAGCCATTTCCTTTTC 58.166 50.000 0.00 0.00 0.00 2.29
774 3283 2.497273 CAATCCCGAGCCATTTCCTTTT 59.503 45.455 0.00 0.00 0.00 2.27
775 3284 2.102578 CAATCCCGAGCCATTTCCTTT 58.897 47.619 0.00 0.00 0.00 3.11
776 3285 1.284785 TCAATCCCGAGCCATTTCCTT 59.715 47.619 0.00 0.00 0.00 3.36
777 3286 0.918983 TCAATCCCGAGCCATTTCCT 59.081 50.000 0.00 0.00 0.00 3.36
778 3287 1.312815 CTCAATCCCGAGCCATTTCC 58.687 55.000 0.00 0.00 0.00 3.13
779 3288 1.312815 CCTCAATCCCGAGCCATTTC 58.687 55.000 0.00 0.00 0.00 2.17
780 3289 0.625849 ACCTCAATCCCGAGCCATTT 59.374 50.000 0.00 0.00 0.00 2.32
781 3290 0.107017 CACCTCAATCCCGAGCCATT 60.107 55.000 0.00 0.00 0.00 3.16
782 3291 1.528824 CACCTCAATCCCGAGCCAT 59.471 57.895 0.00 0.00 0.00 4.40
783 3292 2.989639 CACCTCAATCCCGAGCCA 59.010 61.111 0.00 0.00 0.00 4.75
784 3293 2.514824 GCACCTCAATCCCGAGCC 60.515 66.667 0.00 0.00 0.00 4.70
786 3295 1.672854 TACCGCACCTCAATCCCGAG 61.673 60.000 0.00 0.00 0.00 4.63
787 3296 1.046472 ATACCGCACCTCAATCCCGA 61.046 55.000 0.00 0.00 0.00 5.14
789 3298 1.308998 CAATACCGCACCTCAATCCC 58.691 55.000 0.00 0.00 0.00 3.85
790 3299 2.038387 ACAATACCGCACCTCAATCC 57.962 50.000 0.00 0.00 0.00 3.01
791 3300 3.527533 TGTACAATACCGCACCTCAATC 58.472 45.455 0.00 0.00 0.00 2.67
792 3301 3.620427 TGTACAATACCGCACCTCAAT 57.380 42.857 0.00 0.00 0.00 2.57
793 3302 3.266636 CATGTACAATACCGCACCTCAA 58.733 45.455 0.00 0.00 0.00 3.02
794 3303 2.899976 CATGTACAATACCGCACCTCA 58.100 47.619 0.00 0.00 0.00 3.86
795 3304 1.597663 GCATGTACAATACCGCACCTC 59.402 52.381 0.00 0.00 0.00 3.85
796 3305 1.065782 TGCATGTACAATACCGCACCT 60.066 47.619 0.00 0.00 33.06 4.00
797 3306 1.374560 TGCATGTACAATACCGCACC 58.625 50.000 0.00 0.00 33.06 5.01
798 3307 2.780993 GTTGCATGTACAATACCGCAC 58.219 47.619 0.00 0.00 36.30 5.34
799 3308 1.395262 CGTTGCATGTACAATACCGCA 59.605 47.619 0.00 1.33 35.24 5.69
800 3309 1.395608 ACGTTGCATGTACAATACCGC 59.604 47.619 0.00 0.00 0.00 5.68
1388 4109 6.882656 AGAGACATCCTACTGTAACGTACTA 58.117 40.000 0.00 0.00 0.00 1.82
1389 4110 5.743117 AGAGACATCCTACTGTAACGTACT 58.257 41.667 0.00 0.00 0.00 2.73
1390 4111 5.276773 CGAGAGACATCCTACTGTAACGTAC 60.277 48.000 0.00 0.00 0.00 3.67
1717 4589 7.667575 ACTTCCAGAGAAAGCTATCATCTTA 57.332 36.000 0.00 0.00 0.00 2.10
1769 4642 0.237498 GCCACTGAGTTAAACCACGC 59.763 55.000 0.00 0.00 0.00 5.34
1873 4748 1.135094 ATCGCATTGGAGGGACAGAT 58.865 50.000 0.00 0.00 33.02 2.90
2104 4996 5.352643 AAAACGAAACCTGATTAGAACGG 57.647 39.130 0.00 0.00 0.00 4.44
2164 5056 8.144478 GCACTAAGATGACTCCATTTAGATGTA 58.856 37.037 0.00 0.00 33.13 2.29
2254 5153 5.159209 CAAACACTGCTCAAAATGAGGATC 58.841 41.667 9.25 0.00 43.85 3.36
2419 5321 1.359130 AGACCCTTGCTAAATGGCCTT 59.641 47.619 3.32 0.00 0.00 4.35
2653 5555 3.125658 TGCTGTCATGAATCACAATCGTG 59.874 43.478 0.00 0.00 45.08 4.35
2671 5573 2.745100 ACGCCATCTGCTGTGCTG 60.745 61.111 0.00 0.00 38.05 4.41
2799 6108 3.759618 AGTGAAACCAAAGGTTCGTTCAA 59.240 39.130 1.34 0.00 46.20 2.69
2814 6123 2.970324 TGCGGCGTGGAGTGAAAC 60.970 61.111 9.37 0.00 0.00 2.78
2857 6166 0.606401 CGAACTTCCCAGCACCACAT 60.606 55.000 0.00 0.00 0.00 3.21
2987 6381 7.609918 ACTTAGTGCACCACATTATTACATCAA 59.390 33.333 14.63 0.00 36.74 2.57
3120 6542 3.081061 ACGCCAAATGCACTAATCTTCA 58.919 40.909 0.00 0.00 41.33 3.02
3134 6556 4.640789 ACATGTCTAACAAAACGCCAAA 57.359 36.364 0.00 0.00 0.00 3.28
3228 6667 0.037882 ACAGACGTGACCATGAGCAG 60.038 55.000 0.00 0.00 0.00 4.24
3292 6739 1.300853 AGCAACCAAACGCAATGCC 60.301 52.632 0.00 0.00 37.73 4.40
3370 6823 7.189693 TGTGTTCAGAACTGATAACATGAAC 57.810 36.000 14.51 9.17 44.17 3.18
3392 6845 4.030216 ACTCCTTCCCAACAAAAACATGT 58.970 39.130 0.00 0.00 34.24 3.21
3393 6846 4.141959 ACACTCCTTCCCAACAAAAACATG 60.142 41.667 0.00 0.00 0.00 3.21
3394 6847 4.030216 ACACTCCTTCCCAACAAAAACAT 58.970 39.130 0.00 0.00 0.00 2.71
3395 6848 3.436243 ACACTCCTTCCCAACAAAAACA 58.564 40.909 0.00 0.00 0.00 2.83
3396 6849 3.181479 GGACACTCCTTCCCAACAAAAAC 60.181 47.826 0.00 0.00 32.53 2.43
3398 6851 2.243736 AGGACACTCCTTCCCAACAAAA 59.756 45.455 0.00 0.00 46.91 2.44
3642 7129 8.791327 TTAGCAGAAAATCAATACAGATGTCA 57.209 30.769 0.00 0.00 0.00 3.58
3703 7195 9.712305 GCACTAGGTGATATACTTGATTTATGT 57.288 33.333 1.57 0.00 35.23 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.