Multiple sequence alignment - TraesCS1B01G033200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G033200 chr1B 100.000 3153 0 0 1 3153 16215483 16218635 0.000000e+00 5823
1 TraesCS1B01G033200 chr1B 92.529 1218 49 21 472 1685 23979466 23978287 0.000000e+00 1707
2 TraesCS1B01G033200 chr1B 91.396 523 31 4 1883 2405 23970880 23970372 0.000000e+00 704
3 TraesCS1B01G033200 chr1B 85.281 462 30 15 1 446 23979899 23979460 2.890000e-120 442
4 TraesCS1B01G033200 chr1B 93.902 164 7 1 1681 1844 23971133 23970973 8.740000e-61 244
5 TraesCS1B01G033200 chr1B 79.208 202 33 6 2953 3153 390839007 390838814 7.100000e-27 132
6 TraesCS1B01G033200 chr1B 79.070 172 25 8 2719 2881 23969822 23969653 1.200000e-19 108
7 TraesCS1B01G033200 chr1B 84.615 104 10 2 2607 2704 23970143 23970040 7.200000e-17 99
8 TraesCS1B01G033200 chr1A 92.768 1604 84 17 246 1846 12917883 12919457 0.000000e+00 2290
9 TraesCS1B01G033200 chr1A 85.742 519 27 22 1857 2349 12919576 12920073 3.630000e-139 505
10 TraesCS1B01G033200 chr1A 87.739 261 16 1 1 245 12916796 12917056 1.110000e-74 291
11 TraesCS1B01G033200 chr1A 89.848 197 20 0 242 438 12917131 12917327 1.450000e-63 254
12 TraesCS1B01G033200 chr1D 92.408 1528 77 18 326 1844 10739707 10741204 0.000000e+00 2143
13 TraesCS1B01G033200 chr1D 85.756 688 50 30 1857 2519 10741332 10741996 0.000000e+00 684
14 TraesCS1B01G033200 chr1D 81.159 207 29 8 326 532 10739074 10739270 1.170000e-34 158
15 TraesCS1B01G033200 chr5D 83.721 1548 149 69 326 1847 241275468 241276938 0.000000e+00 1367
16 TraesCS1B01G033200 chr5D 91.818 220 18 0 1930 2149 241277149 241277368 1.100000e-79 307
17 TraesCS1B01G033200 chr5D 97.333 75 1 1 2535 2609 435575931 435575858 3.300000e-25 126
18 TraesCS1B01G033200 chr5D 98.571 70 1 0 2535 2604 318052907 318052838 1.190000e-24 124
19 TraesCS1B01G033200 chr5B 83.549 1544 158 59 326 1847 262353348 262351879 0.000000e+00 1356
20 TraesCS1B01G033200 chr5B 93.333 225 15 0 1930 2154 262351660 262351436 1.810000e-87 333
21 TraesCS1B01G033200 chr5A 83.074 1542 148 54 326 1847 311000426 311001874 0.000000e+00 1297
22 TraesCS1B01G033200 chr5A 93.333 225 15 0 1930 2154 311002087 311002311 1.810000e-87 333
23 TraesCS1B01G033200 chr5A 81.500 200 26 8 2954 3151 286420913 286421103 1.510000e-33 154
24 TraesCS1B01G033200 chr3B 76.818 440 81 17 1398 1831 597840780 597840356 8.800000e-56 228
25 TraesCS1B01G033200 chr3B 76.190 378 73 13 1398 1771 596853057 596853421 1.930000e-42 183
26 TraesCS1B01G033200 chr3B 79.688 192 24 12 2964 3153 764074645 764074467 1.190000e-24 124
27 TraesCS1B01G033200 chr3A 81.853 259 42 4 1403 1657 32100765 32100508 2.460000e-51 213
28 TraesCS1B01G033200 chr3A 80.100 201 33 4 2953 3153 542228559 542228366 3.280000e-30 143
29 TraesCS1B01G033200 chr3A 81.053 190 25 8 2964 3151 296726124 296726304 1.180000e-29 141
30 TraesCS1B01G033200 chr4D 82.456 171 21 4 2965 3133 499579234 499579397 1.180000e-29 141
31 TraesCS1B01G033200 chr2D 97.333 75 2 0 2535 2609 17462580 17462506 9.180000e-26 128
32 TraesCS1B01G033200 chr7D 98.592 71 1 0 2535 2605 80042144 80042214 3.300000e-25 126
33 TraesCS1B01G033200 chrUn 98.551 69 1 0 2535 2603 111200012 111200080 4.270000e-24 122
34 TraesCS1B01G033200 chr6D 98.551 69 1 0 2535 2603 78510741 78510809 4.270000e-24 122
35 TraesCS1B01G033200 chr6D 96.000 75 3 0 2535 2609 456306288 456306214 4.270000e-24 122
36 TraesCS1B01G033200 chr3D 93.750 80 4 1 2535 2613 598116916 598116995 5.520000e-23 119
37 TraesCS1B01G033200 chr3D 92.500 80 6 0 2535 2614 434208458 434208537 7.150000e-22 115
38 TraesCS1B01G033200 chr4A 78.836 189 27 7 2967 3152 84356172 84355994 7.150000e-22 115
39 TraesCS1B01G033200 chr4A 78.534 191 29 10 2964 3153 97816007 97815828 7.150000e-22 115
40 TraesCS1B01G033200 chr2A 78.462 195 27 10 2961 3152 394227943 394228125 2.570000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G033200 chr1B 16215483 16218635 3152 False 5823.00 5823 100.00000 1 3153 1 chr1B.!!$F1 3152
1 TraesCS1B01G033200 chr1B 23978287 23979899 1612 True 1074.50 1707 88.90500 1 1685 2 chr1B.!!$R3 1684
2 TraesCS1B01G033200 chr1B 23969653 23971133 1480 True 288.75 704 87.24575 1681 2881 4 chr1B.!!$R2 1200
3 TraesCS1B01G033200 chr1A 12916796 12920073 3277 False 835.00 2290 89.02425 1 2349 4 chr1A.!!$F1 2348
4 TraesCS1B01G033200 chr1D 10739074 10741996 2922 False 995.00 2143 86.44100 326 2519 3 chr1D.!!$F1 2193
5 TraesCS1B01G033200 chr5D 241275468 241277368 1900 False 837.00 1367 87.76950 326 2149 2 chr5D.!!$F1 1823
6 TraesCS1B01G033200 chr5B 262351436 262353348 1912 True 844.50 1356 88.44100 326 2154 2 chr5B.!!$R1 1828
7 TraesCS1B01G033200 chr5A 311000426 311002311 1885 False 815.00 1297 88.20350 326 2154 2 chr5A.!!$F2 1828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 1274 0.877071 CAAGTAGCAAGTGTGGCCAG 59.123 55.0 5.11 0.0 0.0 4.85 F
1044 1988 0.608308 TTCTTCTCCTCTGCGTCGGA 60.608 55.0 0.00 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 3065 0.178843 AACCCCCTAGAGGAGCCAAA 60.179 55.0 5.84 0.0 38.24 3.28 R
2970 4453 0.096802 TTGCAACGCACGAGCATATG 59.903 50.0 13.57 0.0 38.71 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.276590 CTGCTAATATTTCTGGTGATGTTGATA 57.723 33.333 0.00 0.00 0.00 2.15
51 52 5.758296 GGTGATGTTGATATTGATACCGTGT 59.242 40.000 0.00 0.00 0.00 4.49
52 53 6.292865 GGTGATGTTGATATTGATACCGTGTG 60.293 42.308 0.00 0.00 0.00 3.82
135 152 4.826556 AGAGCCAAGTAGAAGCTTTACTG 58.173 43.478 16.79 12.42 36.87 2.74
137 154 5.012148 AGAGCCAAGTAGAAGCTTTACTGAA 59.988 40.000 16.79 0.00 36.87 3.02
158 175 9.211485 ACTGAAATTGCTTTCCAAAATTATCAG 57.789 29.630 0.00 0.00 40.09 2.90
181 198 5.243060 AGCCCTGTAATGAAAAACCAAGTAC 59.757 40.000 0.00 0.00 0.00 2.73
332 427 3.924686 GCAAAAGAGAAATGAGCACATGG 59.075 43.478 0.00 0.00 36.79 3.66
387 1274 0.877071 CAAGTAGCAAGTGTGGCCAG 59.123 55.000 5.11 0.00 0.00 4.85
427 1319 5.011023 CCCTGCATCTTTTCAAAAAGGTACT 59.989 40.000 13.68 0.00 44.22 2.73
471 1365 3.503748 GGCAACAAGCTACTGTTCTGAAT 59.496 43.478 0.66 0.00 44.79 2.57
476 1370 6.492007 ACAAGCTACTGTTCTGAATCAATG 57.508 37.500 0.00 0.00 0.00 2.82
503 1398 6.857964 GGTGAACAGATACAGAAACAATTGTG 59.142 38.462 12.82 1.75 35.98 3.33
536 1443 3.987594 TCAGCTAGCTGAGGACAGA 57.012 52.632 37.64 18.34 46.80 3.41
537 1444 1.468985 TCAGCTAGCTGAGGACAGAC 58.531 55.000 37.64 0.00 46.80 3.51
538 1445 1.180907 CAGCTAGCTGAGGACAGACA 58.819 55.000 36.47 0.00 46.30 3.41
546 1453 2.411904 CTGAGGACAGACAAGAAGCAC 58.588 52.381 0.00 0.00 46.03 4.40
551 1458 3.067833 GGACAGACAAGAAGCACTAACC 58.932 50.000 0.00 0.00 0.00 2.85
555 1462 2.972713 AGACAAGAAGCACTAACCTGGA 59.027 45.455 0.00 0.00 0.00 3.86
640 1548 6.890293 ACAGTTTCCTTCTTCAGTTTAGACT 58.110 36.000 0.00 0.00 36.25 3.24
641 1549 7.339482 ACAGTTTCCTTCTTCAGTTTAGACTT 58.661 34.615 0.00 0.00 32.54 3.01
642 1550 7.496263 ACAGTTTCCTTCTTCAGTTTAGACTTC 59.504 37.037 0.00 0.00 32.54 3.01
643 1551 7.495934 CAGTTTCCTTCTTCAGTTTAGACTTCA 59.504 37.037 0.00 0.00 32.54 3.02
725 1635 2.951642 TCCTCTGAACTTTTTGCAGGTG 59.048 45.455 0.00 0.00 0.00 4.00
761 1671 1.624479 ATGCTCTCTCTGCACCCAGG 61.624 60.000 0.00 0.00 43.59 4.45
861 1782 2.681064 AATGGCAATGGCAGGCGT 60.681 55.556 16.10 0.00 42.43 5.68
872 1793 4.928398 CAGGCGTTGCATCTCTCT 57.072 55.556 0.00 0.00 0.00 3.10
984 1905 2.102925 CCTGCAACCAACACTTCCATTT 59.897 45.455 0.00 0.00 0.00 2.32
986 1907 2.223688 TGCAACCAACACTTCCATTTCG 60.224 45.455 0.00 0.00 0.00 3.46
991 1920 1.608590 CAACACTTCCATTTCGCCAGT 59.391 47.619 0.00 0.00 0.00 4.00
1044 1988 0.608308 TTCTTCTCCTCTGCGTCGGA 60.608 55.000 0.00 0.00 0.00 4.55
1290 2234 3.691342 TTCGCCGACCTCACCCAG 61.691 66.667 0.00 0.00 0.00 4.45
1560 2504 2.796425 GCTCATCGACTGCAGCGTG 61.796 63.158 23.32 20.17 0.00 5.34
1707 2651 3.743091 GAAGAGCGAGTCCGAGGCG 62.743 68.421 0.00 0.00 38.22 5.52
1848 2792 3.762288 TCTACAGCGGGGTAAGCATATAG 59.238 47.826 0.00 0.00 37.01 1.31
1850 2794 3.503365 ACAGCGGGGTAAGCATATAGTA 58.497 45.455 0.00 0.00 37.01 1.82
1851 2795 3.257624 ACAGCGGGGTAAGCATATAGTAC 59.742 47.826 0.00 0.00 37.01 2.73
1875 3023 2.818130 TTTTGTCTGAGCATTTGGCC 57.182 45.000 0.00 0.00 46.50 5.36
1881 3029 1.203038 TCTGAGCATTTGGCCCTGAAA 60.203 47.619 0.00 0.00 46.50 2.69
1928 3081 6.721208 TCTGAAACAATATTTTTGGCTCCTCT 59.279 34.615 0.00 0.00 0.00 3.69
1951 3104 1.592400 GGTTTTCGACGGTCCGTGT 60.592 57.895 24.45 0.00 41.37 4.49
2167 3320 2.522836 ACTGATCGATGATGACCTGC 57.477 50.000 0.54 0.00 0.00 4.85
2168 3321 2.037901 ACTGATCGATGATGACCTGCT 58.962 47.619 0.54 0.00 0.00 4.24
2169 3322 2.223994 ACTGATCGATGATGACCTGCTG 60.224 50.000 0.54 0.00 0.00 4.41
2170 3323 1.146637 GATCGATGATGACCTGCTGC 58.853 55.000 0.54 0.00 0.00 5.25
2171 3324 0.757512 ATCGATGATGACCTGCTGCT 59.242 50.000 0.00 0.00 0.00 4.24
2172 3325 0.179092 TCGATGATGACCTGCTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
2309 3493 4.030366 GTGTTGTTTCTTTCGGTTAACGG 58.970 43.478 6.82 6.82 44.45 4.44
2373 3557 1.810755 TGCTTTGAGATTGCTGAGCTG 59.189 47.619 5.83 0.00 0.00 4.24
2376 3560 3.603532 CTTTGAGATTGCTGAGCTGGTA 58.396 45.455 5.83 0.00 0.00 3.25
2415 3624 5.186021 AGTGACATGTCTGAGGTAAGGTTAG 59.814 44.000 25.55 0.00 0.00 2.34
2424 3633 3.197766 TGAGGTAAGGTTAGTGCATGGAG 59.802 47.826 0.00 0.00 0.00 3.86
2431 3640 3.118112 AGGTTAGTGCATGGAGATCAAGG 60.118 47.826 0.00 0.00 0.00 3.61
2435 3644 2.170187 AGTGCATGGAGATCAAGGTCTC 59.830 50.000 1.66 1.66 43.10 3.36
2452 3661 3.579275 TCCTCTTCCTCGGAGACAG 57.421 57.895 6.58 1.88 33.03 3.51
2508 3717 1.404843 TAACCCCAGTGCCAACAAAC 58.595 50.000 0.00 0.00 0.00 2.93
2510 3719 0.616111 ACCCCAGTGCCAACAAACAA 60.616 50.000 0.00 0.00 0.00 2.83
2511 3720 0.179086 CCCCAGTGCCAACAAACAAC 60.179 55.000 0.00 0.00 0.00 3.32
2513 3722 0.534412 CCAGTGCCAACAAACAACCA 59.466 50.000 0.00 0.00 0.00 3.67
2516 3783 1.620819 AGTGCCAACAAACAACCACAA 59.379 42.857 0.00 0.00 0.00 3.33
2518 3785 2.158645 GTGCCAACAAACAACCACAAAC 59.841 45.455 0.00 0.00 0.00 2.93
2521 3788 3.393800 CCAACAAACAACCACAAACACA 58.606 40.909 0.00 0.00 0.00 3.72
2526 3793 1.091537 ACAACCACAAACACACCTCG 58.908 50.000 0.00 0.00 0.00 4.63
2529 3796 0.250793 ACCACAAACACACCTCGACA 59.749 50.000 0.00 0.00 0.00 4.35
2535 3802 3.374058 ACAAACACACCTCGACAAGAAAG 59.626 43.478 0.00 0.00 0.00 2.62
2538 3805 3.654414 ACACACCTCGACAAGAAAGATC 58.346 45.455 0.00 0.00 0.00 2.75
2541 3808 3.071023 ACACCTCGACAAGAAAGATCCAA 59.929 43.478 0.00 0.00 0.00 3.53
2544 3811 4.020218 ACCTCGACAAGAAAGATCCAATGA 60.020 41.667 0.00 0.00 0.00 2.57
2545 3812 4.331168 CCTCGACAAGAAAGATCCAATGAC 59.669 45.833 0.00 0.00 0.00 3.06
2546 3813 4.253685 TCGACAAGAAAGATCCAATGACC 58.746 43.478 0.00 0.00 0.00 4.02
2547 3814 3.062639 CGACAAGAAAGATCCAATGACCG 59.937 47.826 0.00 0.00 0.00 4.79
2548 3815 4.253685 GACAAGAAAGATCCAATGACCGA 58.746 43.478 0.00 0.00 0.00 4.69
2549 3816 4.256920 ACAAGAAAGATCCAATGACCGAG 58.743 43.478 0.00 0.00 0.00 4.63
2551 3818 4.826274 AGAAAGATCCAATGACCGAGAA 57.174 40.909 0.00 0.00 0.00 2.87
2552 3819 4.764172 AGAAAGATCCAATGACCGAGAAG 58.236 43.478 0.00 0.00 0.00 2.85
2553 3820 2.611225 AGATCCAATGACCGAGAAGC 57.389 50.000 0.00 0.00 0.00 3.86
2554 3821 2.114616 AGATCCAATGACCGAGAAGCT 58.885 47.619 0.00 0.00 0.00 3.74
2555 3822 2.102252 AGATCCAATGACCGAGAAGCTC 59.898 50.000 0.00 0.00 0.00 4.09
2556 3823 1.561643 TCCAATGACCGAGAAGCTCT 58.438 50.000 0.00 0.00 0.00 4.09
2557 3824 1.902508 TCCAATGACCGAGAAGCTCTT 59.097 47.619 0.00 0.00 0.00 2.85
2558 3825 2.005451 CCAATGACCGAGAAGCTCTTG 58.995 52.381 0.00 0.00 0.00 3.02
2583 3850 2.311124 CCTAAACTTAGGTGCTCCCG 57.689 55.000 7.28 0.00 44.26 5.14
2584 3851 1.553704 CCTAAACTTAGGTGCTCCCGT 59.446 52.381 7.28 0.00 44.26 5.28
2585 3852 2.762327 CCTAAACTTAGGTGCTCCCGTA 59.238 50.000 7.28 0.00 44.26 4.02
2586 3853 3.181478 CCTAAACTTAGGTGCTCCCGTAG 60.181 52.174 7.28 0.00 44.26 3.51
2587 3854 6.760290 CCTAAACTTAGGTGCTCCCGTAGC 62.760 54.167 7.28 0.24 45.27 3.58
2598 3865 3.753294 CTCCCGTAGCACCTGATATTT 57.247 47.619 0.00 0.00 0.00 1.40
2599 3866 4.073293 CTCCCGTAGCACCTGATATTTT 57.927 45.455 0.00 0.00 0.00 1.82
2600 3867 4.058817 CTCCCGTAGCACCTGATATTTTC 58.941 47.826 0.00 0.00 0.00 2.29
2601 3868 3.139077 CCCGTAGCACCTGATATTTTCC 58.861 50.000 0.00 0.00 0.00 3.13
2602 3869 3.139077 CCGTAGCACCTGATATTTTCCC 58.861 50.000 0.00 0.00 0.00 3.97
2603 3870 3.139077 CGTAGCACCTGATATTTTCCCC 58.861 50.000 0.00 0.00 0.00 4.81
2604 3871 2.755952 AGCACCTGATATTTTCCCCC 57.244 50.000 0.00 0.00 0.00 5.40
2605 3872 2.217776 AGCACCTGATATTTTCCCCCT 58.782 47.619 0.00 0.00 0.00 4.79
2611 3878 3.461831 CCTGATATTTTCCCCCTACACCA 59.538 47.826 0.00 0.00 0.00 4.17
2618 3885 2.170012 TCCCCCTACACCACATCTAC 57.830 55.000 0.00 0.00 0.00 2.59
2619 3886 1.129058 CCCCCTACACCACATCTACC 58.871 60.000 0.00 0.00 0.00 3.18
2625 3892 0.323629 ACACCACATCTACCCCAACG 59.676 55.000 0.00 0.00 0.00 4.10
2633 3900 5.364778 CACATCTACCCCAACGATTTATCA 58.635 41.667 0.00 0.00 0.00 2.15
2637 3904 3.943671 ACCCCAACGATTTATCATCCA 57.056 42.857 0.00 0.00 0.00 3.41
2639 3906 4.207165 ACCCCAACGATTTATCATCCAAG 58.793 43.478 0.00 0.00 0.00 3.61
2668 3935 6.831769 ACAGTACAAAGACAGAATAATTGCG 58.168 36.000 0.00 0.00 0.00 4.85
2674 3941 5.551760 AAGACAGAATAATTGCGGTTGAG 57.448 39.130 0.00 0.00 0.00 3.02
2717 4166 2.291735 ACCACATCTGCCAATCCAATGA 60.292 45.455 0.00 0.00 0.00 2.57
2722 4198 1.019673 CTGCCAATCCAATGACCTCG 58.980 55.000 0.00 0.00 0.00 4.63
2733 4209 3.871594 CCAATGACCTCGAAGAACCATAC 59.128 47.826 0.00 0.00 34.09 2.39
2747 4230 5.930135 AGAACCATACTGAAGAGTTGTTGT 58.070 37.500 0.00 0.00 33.21 3.32
2752 4235 6.039382 ACCATACTGAAGAGTTGTTGTTTTCC 59.961 38.462 0.00 0.00 33.21 3.13
2753 4236 4.616181 ACTGAAGAGTTGTTGTTTTCCG 57.384 40.909 0.00 0.00 0.00 4.30
2758 4241 4.365899 AGAGTTGTTGTTTTCCGGTTTC 57.634 40.909 0.00 0.00 0.00 2.78
2761 4244 3.129813 AGTTGTTGTTTTCCGGTTTCTCC 59.870 43.478 0.00 0.00 0.00 3.71
2762 4245 2.025898 TGTTGTTTTCCGGTTTCTCCC 58.974 47.619 0.00 0.00 0.00 4.30
2776 4259 4.127907 GTTTCTCCCGGTTATTCTCATCC 58.872 47.826 0.00 0.00 0.00 3.51
2777 4260 3.330126 TCTCCCGGTTATTCTCATCCT 57.670 47.619 0.00 0.00 0.00 3.24
2778 4261 3.654273 TCTCCCGGTTATTCTCATCCTT 58.346 45.455 0.00 0.00 0.00 3.36
2779 4262 3.641906 TCTCCCGGTTATTCTCATCCTTC 59.358 47.826 0.00 0.00 0.00 3.46
2782 4265 4.130118 CCCGGTTATTCTCATCCTTCTTG 58.870 47.826 0.00 0.00 0.00 3.02
2784 4267 5.186198 CCGGTTATTCTCATCCTTCTTGTT 58.814 41.667 0.00 0.00 0.00 2.83
2787 4270 6.180472 GGTTATTCTCATCCTTCTTGTTCCA 58.820 40.000 0.00 0.00 0.00 3.53
2788 4271 6.659242 GGTTATTCTCATCCTTCTTGTTCCAA 59.341 38.462 0.00 0.00 0.00 3.53
2820 4303 4.150804 GTCGTCACCTCACTTCTTTTCATC 59.849 45.833 0.00 0.00 0.00 2.92
2825 4308 4.752101 CACCTCACTTCTTTTCATCGTCTT 59.248 41.667 0.00 0.00 0.00 3.01
2830 4313 7.331934 CCTCACTTCTTTTCATCGTCTTGATTA 59.668 37.037 0.00 0.00 34.13 1.75
2832 4315 6.958193 CACTTCTTTTCATCGTCTTGATTAGC 59.042 38.462 0.00 0.00 34.13 3.09
2835 4318 5.516696 TCTTTTCATCGTCTTGATTAGCGAG 59.483 40.000 0.00 0.00 36.41 5.03
2837 4320 1.789464 CATCGTCTTGATTAGCGAGGC 59.211 52.381 0.00 0.00 36.41 4.70
2838 4321 0.815095 TCGTCTTGATTAGCGAGGCA 59.185 50.000 0.00 0.00 31.72 4.75
2839 4322 0.924090 CGTCTTGATTAGCGAGGCAC 59.076 55.000 0.00 0.00 31.72 5.01
2863 4346 0.881796 GGTGTGCTTCTAAGGTTGGC 59.118 55.000 0.00 0.00 0.00 4.52
2865 4348 0.476338 TGTGCTTCTAAGGTTGGCCA 59.524 50.000 0.00 0.00 37.19 5.36
2871 4354 3.371595 GCTTCTAAGGTTGGCCATCCTTA 60.372 47.826 36.69 36.69 42.95 2.69
2875 4358 5.937111 TCTAAGGTTGGCCATCCTTATTAC 58.063 41.667 38.19 20.21 42.84 1.89
2881 4364 2.438021 TGGCCATCCTTATTACGCTTCT 59.562 45.455 0.00 0.00 0.00 2.85
2882 4365 3.118038 TGGCCATCCTTATTACGCTTCTT 60.118 43.478 0.00 0.00 0.00 2.52
2883 4366 3.251004 GGCCATCCTTATTACGCTTCTTG 59.749 47.826 0.00 0.00 0.00 3.02
2884 4367 3.877508 GCCATCCTTATTACGCTTCTTGT 59.122 43.478 0.00 0.00 0.00 3.16
2885 4368 4.260784 GCCATCCTTATTACGCTTCTTGTG 60.261 45.833 0.00 0.00 0.00 3.33
2886 4369 4.273480 CCATCCTTATTACGCTTCTTGTGG 59.727 45.833 0.00 0.00 0.00 4.17
2887 4370 4.546829 TCCTTATTACGCTTCTTGTGGT 57.453 40.909 0.00 0.00 0.00 4.16
2888 4371 4.501071 TCCTTATTACGCTTCTTGTGGTC 58.499 43.478 0.00 0.00 0.00 4.02
2889 4372 4.222145 TCCTTATTACGCTTCTTGTGGTCT 59.778 41.667 0.00 0.00 0.00 3.85
2890 4373 4.935808 CCTTATTACGCTTCTTGTGGTCTT 59.064 41.667 0.00 0.00 0.00 3.01
2891 4374 5.411669 CCTTATTACGCTTCTTGTGGTCTTT 59.588 40.000 0.00 0.00 0.00 2.52
2892 4375 6.592607 CCTTATTACGCTTCTTGTGGTCTTTA 59.407 38.462 0.00 0.00 0.00 1.85
2893 4376 7.280205 CCTTATTACGCTTCTTGTGGTCTTTAT 59.720 37.037 0.00 0.00 0.00 1.40
2894 4377 8.556213 TTATTACGCTTCTTGTGGTCTTTATT 57.444 30.769 0.00 0.00 0.00 1.40
2895 4378 6.476243 TTACGCTTCTTGTGGTCTTTATTC 57.524 37.500 0.00 0.00 0.00 1.75
2896 4379 3.432252 ACGCTTCTTGTGGTCTTTATTCG 59.568 43.478 0.00 0.00 0.00 3.34
2897 4380 3.181520 CGCTTCTTGTGGTCTTTATTCGG 60.182 47.826 0.00 0.00 0.00 4.30
2898 4381 3.426292 GCTTCTTGTGGTCTTTATTCGGC 60.426 47.826 0.00 0.00 0.00 5.54
2899 4382 3.410631 TCTTGTGGTCTTTATTCGGCA 57.589 42.857 0.00 0.00 0.00 5.69
2900 4383 3.745799 TCTTGTGGTCTTTATTCGGCAA 58.254 40.909 0.00 0.00 0.00 4.52
2901 4384 4.138290 TCTTGTGGTCTTTATTCGGCAAA 58.862 39.130 0.00 0.00 0.00 3.68
2902 4385 4.580995 TCTTGTGGTCTTTATTCGGCAAAA 59.419 37.500 0.00 0.00 0.00 2.44
2903 4386 4.497473 TGTGGTCTTTATTCGGCAAAAG 57.503 40.909 0.00 0.00 34.65 2.27
2904 4387 4.138290 TGTGGTCTTTATTCGGCAAAAGA 58.862 39.130 3.78 3.78 38.93 2.52
2908 4391 2.745281 TCTTTATTCGGCAAAAGACCCG 59.255 45.455 0.00 0.00 45.64 5.28
2909 4392 0.806241 TTATTCGGCAAAAGACCCGC 59.194 50.000 0.00 0.00 44.01 6.13
2910 4393 0.321741 TATTCGGCAAAAGACCCGCA 60.322 50.000 0.00 0.00 44.01 5.69
2911 4394 1.175983 ATTCGGCAAAAGACCCGCAA 61.176 50.000 0.00 0.00 44.01 4.85
2912 4395 1.384989 TTCGGCAAAAGACCCGCAAA 61.385 50.000 0.00 0.00 44.01 3.68
2913 4396 1.371635 CGGCAAAAGACCCGCAAAG 60.372 57.895 0.00 0.00 37.85 2.77
2914 4397 1.739667 GGCAAAAGACCCGCAAAGT 59.260 52.632 0.00 0.00 0.00 2.66
2915 4398 0.104120 GGCAAAAGACCCGCAAAGTT 59.896 50.000 0.00 0.00 0.00 2.66
2916 4399 1.472552 GGCAAAAGACCCGCAAAGTTT 60.473 47.619 0.00 0.00 0.00 2.66
2917 4400 1.858458 GCAAAAGACCCGCAAAGTTTC 59.142 47.619 0.00 0.00 0.00 2.78
2918 4401 2.116366 CAAAAGACCCGCAAAGTTTCG 58.884 47.619 0.00 0.00 0.00 3.46
2919 4402 1.385528 AAAGACCCGCAAAGTTTCGT 58.614 45.000 6.68 0.00 0.00 3.85
2920 4403 2.243602 AAGACCCGCAAAGTTTCGTA 57.756 45.000 6.68 0.00 0.00 3.43
2921 4404 1.792006 AGACCCGCAAAGTTTCGTAG 58.208 50.000 6.68 2.10 0.00 3.51
2922 4405 1.342174 AGACCCGCAAAGTTTCGTAGA 59.658 47.619 6.68 0.00 0.00 2.59
2923 4406 1.458445 GACCCGCAAAGTTTCGTAGAC 59.542 52.381 6.68 0.00 34.32 2.59
2924 4407 1.202557 ACCCGCAAAGTTTCGTAGACA 60.203 47.619 6.68 0.00 34.32 3.41
2925 4408 1.868498 CCCGCAAAGTTTCGTAGACAA 59.132 47.619 6.68 0.00 34.32 3.18
2926 4409 2.482721 CCCGCAAAGTTTCGTAGACAAT 59.517 45.455 6.68 0.00 34.32 2.71
2927 4410 3.424433 CCCGCAAAGTTTCGTAGACAATC 60.424 47.826 6.68 0.00 34.32 2.67
2928 4411 3.185594 CCGCAAAGTTTCGTAGACAATCA 59.814 43.478 6.68 0.00 34.32 2.57
2929 4412 4.319190 CCGCAAAGTTTCGTAGACAATCAA 60.319 41.667 6.68 0.00 34.32 2.57
2930 4413 5.201910 CGCAAAGTTTCGTAGACAATCAAA 58.798 37.500 0.00 0.00 34.32 2.69
2931 4414 5.336990 CGCAAAGTTTCGTAGACAATCAAAG 59.663 40.000 0.00 0.00 34.32 2.77
2932 4415 5.625311 GCAAAGTTTCGTAGACAATCAAAGG 59.375 40.000 0.00 0.00 34.32 3.11
2933 4416 6.725246 CAAAGTTTCGTAGACAATCAAAGGT 58.275 36.000 0.00 0.00 34.32 3.50
2934 4417 7.519328 GCAAAGTTTCGTAGACAATCAAAGGTA 60.519 37.037 0.00 0.00 34.32 3.08
2935 4418 7.653767 AAGTTTCGTAGACAATCAAAGGTAG 57.346 36.000 0.00 0.00 34.32 3.18
2936 4419 6.989659 AGTTTCGTAGACAATCAAAGGTAGA 58.010 36.000 0.00 0.00 34.32 2.59
2937 4420 7.439381 AGTTTCGTAGACAATCAAAGGTAGAA 58.561 34.615 0.00 0.00 34.32 2.10
2938 4421 7.599245 AGTTTCGTAGACAATCAAAGGTAGAAG 59.401 37.037 0.00 0.00 34.32 2.85
2939 4422 5.408356 TCGTAGACAATCAAAGGTAGAAGC 58.592 41.667 0.00 0.00 0.00 3.86
2940 4423 5.047590 TCGTAGACAATCAAAGGTAGAAGCA 60.048 40.000 0.00 0.00 0.00 3.91
2941 4424 5.812642 CGTAGACAATCAAAGGTAGAAGCAT 59.187 40.000 0.00 0.00 0.00 3.79
2942 4425 6.978659 CGTAGACAATCAAAGGTAGAAGCATA 59.021 38.462 0.00 0.00 0.00 3.14
2943 4426 7.168302 CGTAGACAATCAAAGGTAGAAGCATAG 59.832 40.741 0.00 0.00 0.00 2.23
2944 4427 5.819901 AGACAATCAAAGGTAGAAGCATAGC 59.180 40.000 0.00 0.00 0.00 2.97
2945 4428 5.749462 ACAATCAAAGGTAGAAGCATAGCT 58.251 37.500 0.00 0.00 42.56 3.32
2946 4429 6.889198 ACAATCAAAGGTAGAAGCATAGCTA 58.111 36.000 0.00 0.00 38.25 3.32
2947 4430 7.512992 ACAATCAAAGGTAGAAGCATAGCTAT 58.487 34.615 0.00 0.00 38.25 2.97
2948 4431 7.995488 ACAATCAAAGGTAGAAGCATAGCTATT 59.005 33.333 2.64 0.00 38.25 1.73
2949 4432 7.976135 ATCAAAGGTAGAAGCATAGCTATTG 57.024 36.000 2.64 1.26 38.25 1.90
2950 4433 6.291377 TCAAAGGTAGAAGCATAGCTATTGG 58.709 40.000 2.64 0.00 38.25 3.16
2951 4434 5.896073 AAGGTAGAAGCATAGCTATTGGT 57.104 39.130 2.64 2.93 38.25 3.67
2952 4435 5.896073 AGGTAGAAGCATAGCTATTGGTT 57.104 39.130 15.70 15.70 38.25 3.67
2953 4436 6.253946 AGGTAGAAGCATAGCTATTGGTTT 57.746 37.500 2.64 0.00 38.25 3.27
2954 4437 6.663734 AGGTAGAAGCATAGCTATTGGTTTT 58.336 36.000 2.64 9.28 38.25 2.43
2955 4438 7.119387 AGGTAGAAGCATAGCTATTGGTTTTT 58.881 34.615 2.64 7.19 38.25 1.94
2956 4439 8.272173 AGGTAGAAGCATAGCTATTGGTTTTTA 58.728 33.333 2.64 6.41 38.25 1.52
2957 4440 9.067986 GGTAGAAGCATAGCTATTGGTTTTTAT 57.932 33.333 2.64 3.51 38.25 1.40
2960 4443 9.413734 AGAAGCATAGCTATTGGTTTTTATTCT 57.586 29.630 2.64 2.30 38.25 2.40
2963 4446 9.627123 AGCATAGCTATTGGTTTTTATTCTACA 57.373 29.630 2.64 0.00 36.99 2.74
2964 4447 9.665264 GCATAGCTATTGGTTTTTATTCTACAC 57.335 33.333 2.64 0.00 0.00 2.90
2968 4451 9.110502 AGCTATTGGTTTTTATTCTACACTAGC 57.889 33.333 0.00 0.00 37.36 3.42
2969 4452 8.889717 GCTATTGGTTTTTATTCTACACTAGCA 58.110 33.333 0.00 0.00 37.19 3.49
2971 4454 8.630054 ATTGGTTTTTATTCTACACTAGCACA 57.370 30.769 0.00 0.00 0.00 4.57
2972 4455 8.630054 TTGGTTTTTATTCTACACTAGCACAT 57.370 30.769 0.00 0.00 0.00 3.21
2973 4456 9.727859 TTGGTTTTTATTCTACACTAGCACATA 57.272 29.630 0.00 0.00 0.00 2.29
2974 4457 9.899661 TGGTTTTTATTCTACACTAGCACATAT 57.100 29.630 0.00 0.00 0.00 1.78
2986 4469 3.497110 CACATATGCTCGTGCGTTG 57.503 52.632 9.76 10.11 43.34 4.10
2987 4470 0.587242 CACATATGCTCGTGCGTTGC 60.587 55.000 9.76 5.71 43.34 4.17
2988 4471 1.018752 ACATATGCTCGTGCGTTGCA 61.019 50.000 9.76 14.15 43.34 4.08
2989 4472 0.096802 CATATGCTCGTGCGTTGCAA 59.903 50.000 9.76 0.00 41.47 4.08
2990 4473 0.096976 ATATGCTCGTGCGTTGCAAC 59.903 50.000 19.89 19.89 41.47 4.17
3006 4489 6.619801 GTTGCAACGGGAGAGATATTATTT 57.380 37.500 14.90 0.00 0.00 1.40
3007 4490 7.027778 GTTGCAACGGGAGAGATATTATTTT 57.972 36.000 14.90 0.00 0.00 1.82
3008 4491 7.480810 GTTGCAACGGGAGAGATATTATTTTT 58.519 34.615 14.90 0.00 0.00 1.94
3028 4511 3.744559 GCAACAAGCAACGGGAGA 58.255 55.556 0.00 0.00 44.79 3.71
3029 4512 2.029743 GCAACAAGCAACGGGAGAA 58.970 52.632 0.00 0.00 44.79 2.87
3030 4513 0.383949 GCAACAAGCAACGGGAGAAA 59.616 50.000 0.00 0.00 44.79 2.52
3031 4514 1.000274 GCAACAAGCAACGGGAGAAAT 60.000 47.619 0.00 0.00 44.79 2.17
3032 4515 2.227865 GCAACAAGCAACGGGAGAAATA 59.772 45.455 0.00 0.00 44.79 1.40
3033 4516 3.305064 GCAACAAGCAACGGGAGAAATAA 60.305 43.478 0.00 0.00 44.79 1.40
3034 4517 4.618227 GCAACAAGCAACGGGAGAAATAAT 60.618 41.667 0.00 0.00 44.79 1.28
3035 4518 5.469479 CAACAAGCAACGGGAGAAATAATT 58.531 37.500 0.00 0.00 0.00 1.40
3036 4519 5.059404 ACAAGCAACGGGAGAAATAATTG 57.941 39.130 0.00 0.00 0.00 2.32
3037 4520 4.764823 ACAAGCAACGGGAGAAATAATTGA 59.235 37.500 0.00 0.00 0.00 2.57
3038 4521 4.965119 AGCAACGGGAGAAATAATTGAC 57.035 40.909 0.00 0.00 0.00 3.18
3039 4522 3.374058 AGCAACGGGAGAAATAATTGACG 59.626 43.478 0.00 0.00 0.00 4.35
3040 4523 3.126343 GCAACGGGAGAAATAATTGACGT 59.874 43.478 0.00 0.00 34.52 4.34
3041 4524 4.647964 CAACGGGAGAAATAATTGACGTG 58.352 43.478 0.00 0.00 33.27 4.49
3042 4525 3.934068 ACGGGAGAAATAATTGACGTGT 58.066 40.909 0.00 0.00 31.60 4.49
3043 4526 3.930848 ACGGGAGAAATAATTGACGTGTC 59.069 43.478 0.00 0.00 31.60 3.67
3044 4527 3.308866 CGGGAGAAATAATTGACGTGTCC 59.691 47.826 0.00 0.00 0.00 4.02
3045 4528 4.258543 GGGAGAAATAATTGACGTGTCCA 58.741 43.478 0.00 0.00 0.00 4.02
3046 4529 4.881850 GGGAGAAATAATTGACGTGTCCAT 59.118 41.667 0.00 0.00 0.00 3.41
3047 4530 5.007724 GGGAGAAATAATTGACGTGTCCATC 59.992 44.000 0.00 0.00 0.00 3.51
3048 4531 5.584649 GGAGAAATAATTGACGTGTCCATCA 59.415 40.000 0.00 0.00 0.00 3.07
3049 4532 6.093495 GGAGAAATAATTGACGTGTCCATCAA 59.907 38.462 0.00 0.00 39.09 2.57
3050 4533 7.361713 GGAGAAATAATTGACGTGTCCATCAAA 60.362 37.037 0.00 0.00 38.29 2.69
3051 4534 7.881142 AGAAATAATTGACGTGTCCATCAAAA 58.119 30.769 0.00 0.00 38.29 2.44
3052 4535 8.356657 AGAAATAATTGACGTGTCCATCAAAAA 58.643 29.630 0.00 0.00 38.29 1.94
3071 4554 5.982890 AAAAATGGTCTCCACAATGGTAG 57.017 39.130 0.00 0.00 39.03 3.18
3072 4555 3.652057 AATGGTCTCCACAATGGTAGG 57.348 47.619 0.00 0.00 39.03 3.18
3073 4556 0.618458 TGGTCTCCACAATGGTAGGC 59.382 55.000 0.00 0.00 39.03 3.93
3074 4557 0.462047 GGTCTCCACAATGGTAGGCG 60.462 60.000 0.00 0.00 39.03 5.52
3075 4558 0.535335 GTCTCCACAATGGTAGGCGA 59.465 55.000 0.00 0.00 39.03 5.54
3076 4559 0.535335 TCTCCACAATGGTAGGCGAC 59.465 55.000 0.00 0.00 39.03 5.19
3077 4560 0.249120 CTCCACAATGGTAGGCGACA 59.751 55.000 0.00 0.00 39.03 4.35
3078 4561 0.036765 TCCACAATGGTAGGCGACAC 60.037 55.000 0.00 0.00 39.03 3.67
3079 4562 0.321210 CCACAATGGTAGGCGACACA 60.321 55.000 0.00 0.00 31.35 3.72
3080 4563 1.678728 CCACAATGGTAGGCGACACAT 60.679 52.381 0.00 0.00 31.35 3.21
3081 4564 2.083774 CACAATGGTAGGCGACACATT 58.916 47.619 0.00 4.62 32.40 2.71
3082 4565 3.266636 CACAATGGTAGGCGACACATTA 58.733 45.455 11.74 0.00 31.57 1.90
3083 4566 3.687212 CACAATGGTAGGCGACACATTAA 59.313 43.478 11.74 0.00 31.57 1.40
3084 4567 3.938963 ACAATGGTAGGCGACACATTAAG 59.061 43.478 11.74 6.18 31.57 1.85
3085 4568 2.684001 TGGTAGGCGACACATTAAGG 57.316 50.000 0.00 0.00 0.00 2.69
3086 4569 2.181125 TGGTAGGCGACACATTAAGGA 58.819 47.619 0.00 0.00 0.00 3.36
3087 4570 2.167693 TGGTAGGCGACACATTAAGGAG 59.832 50.000 0.00 0.00 0.00 3.69
3088 4571 2.167900 GGTAGGCGACACATTAAGGAGT 59.832 50.000 0.00 0.00 0.00 3.85
3089 4572 3.369157 GGTAGGCGACACATTAAGGAGTT 60.369 47.826 0.00 0.00 0.00 3.01
3090 4573 2.699954 AGGCGACACATTAAGGAGTTG 58.300 47.619 0.00 0.00 0.00 3.16
3091 4574 1.130561 GGCGACACATTAAGGAGTTGC 59.869 52.381 18.12 18.12 39.96 4.17
3092 4575 1.201921 GCGACACATTAAGGAGTTGCG 60.202 52.381 12.96 4.68 32.35 4.85
3093 4576 1.201921 CGACACATTAAGGAGTTGCGC 60.202 52.381 0.00 0.00 0.00 6.09
3094 4577 0.796312 ACACATTAAGGAGTTGCGCG 59.204 50.000 0.00 0.00 0.00 6.86
3095 4578 0.521242 CACATTAAGGAGTTGCGCGC 60.521 55.000 27.26 27.26 0.00 6.86
3096 4579 1.296867 CATTAAGGAGTTGCGCGCG 60.297 57.895 28.44 28.44 0.00 6.86
3097 4580 2.461110 ATTAAGGAGTTGCGCGCGG 61.461 57.895 33.06 13.66 0.00 6.46
3098 4581 3.869473 TTAAGGAGTTGCGCGCGGT 62.869 57.895 33.06 13.53 0.00 5.68
3102 4585 4.135493 GAGTTGCGCGCGGTCTTC 62.135 66.667 33.06 15.04 0.00 2.87
3103 4586 4.664677 AGTTGCGCGCGGTCTTCT 62.665 61.111 33.06 14.30 0.00 2.85
3104 4587 4.135493 GTTGCGCGCGGTCTTCTC 62.135 66.667 33.06 13.41 0.00 2.87
3105 4588 4.656117 TTGCGCGCGGTCTTCTCA 62.656 61.111 33.06 16.18 0.00 3.27
3108 4591 3.175240 CGCGCGGTCTTCTCACTG 61.175 66.667 24.84 0.00 0.00 3.66
3109 4592 2.811317 GCGCGGTCTTCTCACTGG 60.811 66.667 8.83 0.00 0.00 4.00
3110 4593 2.962569 CGCGGTCTTCTCACTGGA 59.037 61.111 0.00 0.00 0.00 3.86
3111 4594 1.513158 CGCGGTCTTCTCACTGGAT 59.487 57.895 0.00 0.00 0.00 3.41
3112 4595 0.108615 CGCGGTCTTCTCACTGGATT 60.109 55.000 0.00 0.00 0.00 3.01
3113 4596 1.673033 CGCGGTCTTCTCACTGGATTT 60.673 52.381 0.00 0.00 0.00 2.17
3114 4597 1.734465 GCGGTCTTCTCACTGGATTTG 59.266 52.381 0.00 0.00 0.00 2.32
3115 4598 2.872038 GCGGTCTTCTCACTGGATTTGT 60.872 50.000 0.00 0.00 0.00 2.83
3116 4599 3.403038 CGGTCTTCTCACTGGATTTGTT 58.597 45.455 0.00 0.00 0.00 2.83
3117 4600 3.815401 CGGTCTTCTCACTGGATTTGTTT 59.185 43.478 0.00 0.00 0.00 2.83
3118 4601 4.319766 CGGTCTTCTCACTGGATTTGTTTG 60.320 45.833 0.00 0.00 0.00 2.93
3119 4602 4.022849 GGTCTTCTCACTGGATTTGTTTGG 60.023 45.833 0.00 0.00 0.00 3.28
3120 4603 3.569701 TCTTCTCACTGGATTTGTTTGGC 59.430 43.478 0.00 0.00 0.00 4.52
3121 4604 2.238521 TCTCACTGGATTTGTTTGGCC 58.761 47.619 0.00 0.00 0.00 5.36
3122 4605 1.273327 CTCACTGGATTTGTTTGGCCC 59.727 52.381 0.00 0.00 0.00 5.80
3123 4606 0.038343 CACTGGATTTGTTTGGCCCG 60.038 55.000 0.00 0.00 0.00 6.13
3124 4607 0.469144 ACTGGATTTGTTTGGCCCGT 60.469 50.000 0.00 0.00 0.00 5.28
3125 4608 0.038343 CTGGATTTGTTTGGCCCGTG 60.038 55.000 0.00 0.00 0.00 4.94
3126 4609 0.468214 TGGATTTGTTTGGCCCGTGA 60.468 50.000 0.00 0.00 0.00 4.35
3127 4610 0.676736 GGATTTGTTTGGCCCGTGAA 59.323 50.000 0.00 0.00 0.00 3.18
3128 4611 1.069358 GGATTTGTTTGGCCCGTGAAA 59.931 47.619 0.00 0.00 0.00 2.69
3129 4612 2.289382 GGATTTGTTTGGCCCGTGAAAT 60.289 45.455 0.00 0.00 0.00 2.17
3130 4613 2.517650 TTTGTTTGGCCCGTGAAATC 57.482 45.000 0.00 0.00 0.00 2.17
3131 4614 1.698506 TTGTTTGGCCCGTGAAATCT 58.301 45.000 0.00 0.00 0.00 2.40
3132 4615 1.698506 TGTTTGGCCCGTGAAATCTT 58.301 45.000 0.00 0.00 0.00 2.40
3133 4616 1.339610 TGTTTGGCCCGTGAAATCTTG 59.660 47.619 0.00 0.00 0.00 3.02
3134 4617 1.611491 GTTTGGCCCGTGAAATCTTGA 59.389 47.619 0.00 0.00 0.00 3.02
3135 4618 2.214376 TTGGCCCGTGAAATCTTGAT 57.786 45.000 0.00 0.00 0.00 2.57
3136 4619 3.358111 TTGGCCCGTGAAATCTTGATA 57.642 42.857 0.00 0.00 0.00 2.15
3137 4620 2.917933 TGGCCCGTGAAATCTTGATAG 58.082 47.619 0.00 0.00 0.00 2.08
3138 4621 2.238646 TGGCCCGTGAAATCTTGATAGT 59.761 45.455 0.00 0.00 0.00 2.12
3139 4622 2.614057 GGCCCGTGAAATCTTGATAGTG 59.386 50.000 0.00 0.00 0.00 2.74
3140 4623 2.032178 GCCCGTGAAATCTTGATAGTGC 59.968 50.000 0.00 0.00 0.00 4.40
3141 4624 2.614057 CCCGTGAAATCTTGATAGTGCC 59.386 50.000 0.00 0.00 0.00 5.01
3142 4625 2.285220 CCGTGAAATCTTGATAGTGCCG 59.715 50.000 0.00 0.00 0.00 5.69
3143 4626 2.285220 CGTGAAATCTTGATAGTGCCGG 59.715 50.000 0.00 0.00 0.00 6.13
3144 4627 2.614057 GTGAAATCTTGATAGTGCCGGG 59.386 50.000 2.18 0.00 0.00 5.73
3145 4628 2.222027 GAAATCTTGATAGTGCCGGGG 58.778 52.381 2.18 0.00 0.00 5.73
3146 4629 1.213296 AATCTTGATAGTGCCGGGGT 58.787 50.000 2.18 0.00 0.00 4.95
3147 4630 1.213296 ATCTTGATAGTGCCGGGGTT 58.787 50.000 2.18 0.00 0.00 4.11
3148 4631 0.251916 TCTTGATAGTGCCGGGGTTG 59.748 55.000 2.18 0.00 0.00 3.77
3149 4632 0.748005 CTTGATAGTGCCGGGGTTGG 60.748 60.000 2.18 0.00 0.00 3.77
3150 4633 1.493854 TTGATAGTGCCGGGGTTGGT 61.494 55.000 2.18 0.00 0.00 3.67
3151 4634 1.153229 GATAGTGCCGGGGTTGGTC 60.153 63.158 2.18 0.00 0.00 4.02
3152 4635 2.918230 GATAGTGCCGGGGTTGGTCG 62.918 65.000 2.18 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.880332 ACTTTATTCAGCACACGGTATCAAT 59.120 36.000 0.00 0.00 0.00 2.57
51 52 5.221843 ACAAGAGGTGGTACTTTATTCAGCA 60.222 40.000 0.00 0.00 0.00 4.41
52 53 5.246307 ACAAGAGGTGGTACTTTATTCAGC 58.754 41.667 0.00 0.00 0.00 4.26
135 152 7.414429 GGGCTGATAATTTTGGAAAGCAATTTC 60.414 37.037 0.00 0.00 0.00 2.17
137 154 5.882000 GGGCTGATAATTTTGGAAAGCAATT 59.118 36.000 0.00 0.00 0.00 2.32
158 175 4.600692 ACTTGGTTTTTCATTACAGGGC 57.399 40.909 0.00 0.00 0.00 5.19
215 232 7.771361 TGAACCAACTGTAGACTTGAATTTACA 59.229 33.333 0.00 0.00 0.00 2.41
221 238 4.127171 GCTGAACCAACTGTAGACTTGAA 58.873 43.478 0.00 0.00 0.00 2.69
332 427 3.484229 GCATCAAGTTCATCGTACTGTGC 60.484 47.826 0.00 0.00 0.00 4.57
340 435 1.134280 AGAGGGGCATCAAGTTCATCG 60.134 52.381 0.00 0.00 0.00 3.84
387 1274 0.919710 AGGGGAATGTTACCTCCTGC 59.080 55.000 0.00 0.00 30.74 4.85
450 1344 4.214119 TGATTCAGAACAGTAGCTTGTTGC 59.786 41.667 8.50 1.61 41.15 4.17
471 1365 5.482163 TCTGTATCTGTTCACCACATTGA 57.518 39.130 0.00 0.00 33.76 2.57
476 1370 6.560253 ATTGTTTCTGTATCTGTTCACCAC 57.440 37.500 0.00 0.00 0.00 4.16
503 1398 4.747605 GCTAGCTGAACATAGTAAAGGAGC 59.252 45.833 7.70 0.00 0.00 4.70
535 1442 3.402628 TCCAGGTTAGTGCTTCTTGTC 57.597 47.619 0.00 0.00 0.00 3.18
536 1443 3.857157 TTCCAGGTTAGTGCTTCTTGT 57.143 42.857 0.00 0.00 0.00 3.16
537 1444 5.464168 CATTTTCCAGGTTAGTGCTTCTTG 58.536 41.667 0.00 0.00 0.00 3.02
538 1445 4.524328 CCATTTTCCAGGTTAGTGCTTCTT 59.476 41.667 0.00 0.00 0.00 2.52
546 1453 2.230130 TGGGCCATTTTCCAGGTTAG 57.770 50.000 0.00 0.00 0.00 2.34
551 1458 1.523524 GCCATGGGCCATTTTCCAG 59.476 57.895 18.46 4.08 44.06 3.86
725 1635 1.457346 CATCCCTTTCTGTCTGTGGC 58.543 55.000 0.00 0.00 0.00 5.01
861 1782 6.684686 CAAATGGAGAAAAAGAGAGATGCAA 58.315 36.000 0.00 0.00 0.00 4.08
872 1793 4.420522 AGCAAAGGCAAATGGAGAAAAA 57.579 36.364 0.00 0.00 44.61 1.94
984 1905 1.473257 GCCATGACTGATAACTGGCGA 60.473 52.381 0.00 0.00 42.57 5.54
991 1920 3.282021 GCTTGGAAGCCATGACTGATAA 58.718 45.455 0.00 0.00 46.20 1.75
1290 2234 3.119096 GCGGCCTTGAACTCGTCC 61.119 66.667 0.00 0.00 0.00 4.79
1377 2321 3.883744 CTTCGGCAAGTCGTGGGCT 62.884 63.158 0.00 0.00 0.00 5.19
1485 2429 2.511600 GCGTTGATCCCCTCCACG 60.512 66.667 0.00 0.00 43.79 4.94
1707 2651 2.509336 CCGCTGATCGACACCACC 60.509 66.667 0.00 0.00 41.67 4.61
1708 2652 2.279502 TAGCCGCTGATCGACACCAC 62.280 60.000 2.16 0.00 41.67 4.16
1709 2653 2.049767 TAGCCGCTGATCGACACCA 61.050 57.895 2.16 0.00 41.67 4.17
1860 2804 0.322816 TCAGGGCCAAATGCTCAGAC 60.323 55.000 6.18 0.00 45.81 3.51
1866 2810 3.825143 ACATATTTCAGGGCCAAATGC 57.175 42.857 6.18 0.00 40.16 3.56
1867 2811 5.732633 TCAAACATATTTCAGGGCCAAATG 58.267 37.500 6.18 0.00 0.00 2.32
1869 2813 5.815233 TTCAAACATATTTCAGGGCCAAA 57.185 34.783 6.18 0.00 0.00 3.28
1871 2815 5.483231 TCATTTCAAACATATTTCAGGGCCA 59.517 36.000 6.18 0.00 0.00 5.36
1914 3062 1.570979 CCCCCTAGAGGAGCCAAAAAT 59.429 52.381 0.00 0.00 38.24 1.82
1917 3065 0.178843 AACCCCCTAGAGGAGCCAAA 60.179 55.000 5.84 0.00 38.24 3.28
1918 3066 0.178843 AAACCCCCTAGAGGAGCCAA 60.179 55.000 5.84 0.00 38.24 4.52
1922 3075 1.481363 GTCGAAAACCCCCTAGAGGAG 59.519 57.143 5.84 0.00 38.24 3.69
1928 3081 1.543944 GGACCGTCGAAAACCCCCTA 61.544 60.000 0.00 0.00 0.00 3.53
2220 3373 2.681848 CTCAAGGATGGTTCAGTGCATC 59.318 50.000 0.00 1.71 0.00 3.91
2221 3374 2.306805 TCTCAAGGATGGTTCAGTGCAT 59.693 45.455 0.00 0.00 0.00 3.96
2222 3375 1.699083 TCTCAAGGATGGTTCAGTGCA 59.301 47.619 0.00 0.00 0.00 4.57
2223 3376 2.289945 ACTCTCAAGGATGGTTCAGTGC 60.290 50.000 0.00 0.00 0.00 4.40
2309 3493 3.005472 TCTTATTCCATCCATCGTCGTCC 59.995 47.826 0.00 0.00 0.00 4.79
2339 3523 6.024552 TCTCAAAGCAAACTTGAAAACACT 57.975 33.333 0.00 0.00 35.85 3.55
2354 3538 1.132643 CCAGCTCAGCAATCTCAAAGC 59.867 52.381 0.00 0.00 0.00 3.51
2373 3557 4.689345 GTCACTCAACACAGTAACCATACC 59.311 45.833 0.00 0.00 32.08 2.73
2376 3560 4.415881 TGTCACTCAACACAGTAACCAT 57.584 40.909 0.00 0.00 0.00 3.55
2415 3624 2.559440 GAGACCTTGATCTCCATGCAC 58.441 52.381 0.00 0.00 39.46 4.57
2424 3633 2.360801 CGAGGAAGAGGAGACCTTGATC 59.639 54.545 0.00 0.00 37.38 2.92
2435 3644 1.099689 GACTGTCTCCGAGGAAGAGG 58.900 60.000 0.00 0.00 31.96 3.69
2452 3661 7.552687 TGACTGTTTGGTATGAAGAATATGGAC 59.447 37.037 0.00 0.00 0.00 4.02
2459 3668 6.295249 TGTGATGACTGTTTGGTATGAAGAA 58.705 36.000 0.00 0.00 0.00 2.52
2466 3675 5.029807 TGTCTTGTGATGACTGTTTGGTA 57.970 39.130 0.00 0.00 35.63 3.25
2508 3717 1.063469 GTCGAGGTGTGTTTGTGGTTG 59.937 52.381 0.00 0.00 0.00 3.77
2510 3719 0.250793 TGTCGAGGTGTGTTTGTGGT 59.749 50.000 0.00 0.00 0.00 4.16
2511 3720 1.330521 CTTGTCGAGGTGTGTTTGTGG 59.669 52.381 0.00 0.00 0.00 4.17
2513 3722 2.684001 TCTTGTCGAGGTGTGTTTGT 57.316 45.000 0.00 0.00 0.00 2.83
2516 3783 3.536956 TCTTTCTTGTCGAGGTGTGTT 57.463 42.857 0.00 0.00 0.00 3.32
2518 3785 2.996621 GGATCTTTCTTGTCGAGGTGTG 59.003 50.000 0.00 0.00 0.00 3.82
2521 3788 4.020218 TCATTGGATCTTTCTTGTCGAGGT 60.020 41.667 0.00 0.00 0.00 3.85
2526 3793 4.253685 TCGGTCATTGGATCTTTCTTGTC 58.746 43.478 0.00 0.00 0.00 3.18
2529 3796 4.826274 TCTCGGTCATTGGATCTTTCTT 57.174 40.909 0.00 0.00 0.00 2.52
2535 3802 2.102252 AGAGCTTCTCGGTCATTGGATC 59.898 50.000 0.00 0.00 42.56 3.36
2538 3805 2.005451 CAAGAGCTTCTCGGTCATTGG 58.995 52.381 0.00 0.00 42.56 3.16
2541 3808 1.480137 CTCCAAGAGCTTCTCGGTCAT 59.520 52.381 0.00 0.00 42.56 3.06
2551 3818 7.318278 CCTAAGTTTAGGTGCTCCAAGAGCT 62.318 48.000 16.87 0.00 46.45 4.09
2552 3819 5.158618 CCTAAGTTTAGGTGCTCCAAGAGC 61.159 50.000 9.65 9.65 46.47 4.09
2553 3820 4.508662 CCTAAGTTTAGGTGCTCCAAGAG 58.491 47.826 7.70 0.00 44.26 2.85
2554 3821 4.553330 CCTAAGTTTAGGTGCTCCAAGA 57.447 45.455 7.70 0.00 44.26 3.02
2565 3832 4.043037 CTACGGGAGCACCTAAGTTTAG 57.957 50.000 0.00 0.00 36.97 1.85
2578 3845 3.753294 AAATATCAGGTGCTACGGGAG 57.247 47.619 0.00 0.00 0.00 4.30
2579 3846 3.181458 GGAAAATATCAGGTGCTACGGGA 60.181 47.826 0.00 0.00 0.00 5.14
2580 3847 3.139077 GGAAAATATCAGGTGCTACGGG 58.861 50.000 0.00 0.00 0.00 5.28
2581 3848 3.139077 GGGAAAATATCAGGTGCTACGG 58.861 50.000 0.00 0.00 0.00 4.02
2582 3849 3.139077 GGGGAAAATATCAGGTGCTACG 58.861 50.000 0.00 0.00 0.00 3.51
2583 3850 3.138468 AGGGGGAAAATATCAGGTGCTAC 59.862 47.826 0.00 0.00 0.00 3.58
2584 3851 3.403322 AGGGGGAAAATATCAGGTGCTA 58.597 45.455 0.00 0.00 0.00 3.49
2585 3852 2.217776 AGGGGGAAAATATCAGGTGCT 58.782 47.619 0.00 0.00 0.00 4.40
2586 3853 2.755952 AGGGGGAAAATATCAGGTGC 57.244 50.000 0.00 0.00 0.00 5.01
2587 3854 4.461198 GTGTAGGGGGAAAATATCAGGTG 58.539 47.826 0.00 0.00 0.00 4.00
2588 3855 3.462205 GGTGTAGGGGGAAAATATCAGGT 59.538 47.826 0.00 0.00 0.00 4.00
2589 3856 3.461831 TGGTGTAGGGGGAAAATATCAGG 59.538 47.826 0.00 0.00 0.00 3.86
2590 3857 4.080015 TGTGGTGTAGGGGGAAAATATCAG 60.080 45.833 0.00 0.00 0.00 2.90
2591 3858 3.853181 TGTGGTGTAGGGGGAAAATATCA 59.147 43.478 0.00 0.00 0.00 2.15
2592 3859 4.513406 TGTGGTGTAGGGGGAAAATATC 57.487 45.455 0.00 0.00 0.00 1.63
2593 3860 4.731929 AGATGTGGTGTAGGGGGAAAATAT 59.268 41.667 0.00 0.00 0.00 1.28
2594 3861 4.116113 AGATGTGGTGTAGGGGGAAAATA 58.884 43.478 0.00 0.00 0.00 1.40
2595 3862 2.926329 AGATGTGGTGTAGGGGGAAAAT 59.074 45.455 0.00 0.00 0.00 1.82
2596 3863 2.354328 AGATGTGGTGTAGGGGGAAAA 58.646 47.619 0.00 0.00 0.00 2.29
2597 3864 2.053747 AGATGTGGTGTAGGGGGAAA 57.946 50.000 0.00 0.00 0.00 3.13
2598 3865 2.474112 GTAGATGTGGTGTAGGGGGAA 58.526 52.381 0.00 0.00 0.00 3.97
2599 3866 1.343681 GGTAGATGTGGTGTAGGGGGA 60.344 57.143 0.00 0.00 0.00 4.81
2600 3867 1.129058 GGTAGATGTGGTGTAGGGGG 58.871 60.000 0.00 0.00 0.00 5.40
2601 3868 1.129058 GGGTAGATGTGGTGTAGGGG 58.871 60.000 0.00 0.00 0.00 4.79
2602 3869 1.129058 GGGGTAGATGTGGTGTAGGG 58.871 60.000 0.00 0.00 0.00 3.53
2603 3870 1.874129 TGGGGTAGATGTGGTGTAGG 58.126 55.000 0.00 0.00 0.00 3.18
2604 3871 2.418197 CGTTGGGGTAGATGTGGTGTAG 60.418 54.545 0.00 0.00 0.00 2.74
2605 3872 1.551430 CGTTGGGGTAGATGTGGTGTA 59.449 52.381 0.00 0.00 0.00 2.90
2611 3878 5.623956 TGATAAATCGTTGGGGTAGATGT 57.376 39.130 0.00 0.00 0.00 3.06
2618 3885 3.569701 CCTTGGATGATAAATCGTTGGGG 59.430 47.826 0.00 0.00 0.00 4.96
2619 3886 4.275936 GTCCTTGGATGATAAATCGTTGGG 59.724 45.833 0.00 0.00 0.00 4.12
2625 3892 7.552687 TGTACTGTTGTCCTTGGATGATAAATC 59.447 37.037 0.00 0.00 0.00 2.17
2633 3900 5.063880 GTCTTTGTACTGTTGTCCTTGGAT 58.936 41.667 0.00 0.00 0.00 3.41
2637 3904 5.353394 TCTGTCTTTGTACTGTTGTCCTT 57.647 39.130 0.00 0.00 0.00 3.36
2639 3906 7.724305 TTATTCTGTCTTTGTACTGTTGTCC 57.276 36.000 0.00 0.00 0.00 4.02
2668 3935 1.079503 CTAGGTTTCGCTGCTCAACC 58.920 55.000 17.58 17.58 40.40 3.77
2674 3941 2.754995 GGCTGCTAGGTTTCGCTGC 61.755 63.158 0.00 0.00 46.26 5.25
2679 3952 1.308783 GGTGCAGGCTGCTAGGTTTC 61.309 60.000 36.50 18.19 45.31 2.78
2717 4166 4.087182 TCTTCAGTATGGTTCTTCGAGGT 58.913 43.478 0.00 0.00 36.16 3.85
2722 4198 6.483640 ACAACAACTCTTCAGTATGGTTCTTC 59.516 38.462 0.00 0.00 36.16 2.87
2733 4209 3.377172 ACCGGAAAACAACAACTCTTCAG 59.623 43.478 9.46 0.00 0.00 3.02
2753 4236 3.622166 TGAGAATAACCGGGAGAAACC 57.378 47.619 6.32 0.00 38.08 3.27
2758 4241 3.643792 AGAAGGATGAGAATAACCGGGAG 59.356 47.826 6.32 0.00 0.00 4.30
2761 4244 4.770795 ACAAGAAGGATGAGAATAACCGG 58.229 43.478 0.00 0.00 0.00 5.28
2762 4245 5.294552 GGAACAAGAAGGATGAGAATAACCG 59.705 44.000 0.00 0.00 0.00 4.44
2787 4270 0.763223 AGGTGACGACAAGGGTCCTT 60.763 55.000 0.00 0.00 41.13 3.36
2788 4271 1.152312 AGGTGACGACAAGGGTCCT 60.152 57.895 0.00 0.00 41.13 3.85
2820 4303 0.924090 GTGCCTCGCTAATCAAGACG 59.076 55.000 0.00 0.00 0.00 4.18
2842 4325 2.863809 CCAACCTTAGAAGCACACCTT 58.136 47.619 0.00 0.00 36.19 3.50
2843 4326 1.545651 GCCAACCTTAGAAGCACACCT 60.546 52.381 0.00 0.00 0.00 4.00
2845 4328 0.881796 GGCCAACCTTAGAAGCACAC 59.118 55.000 0.00 0.00 0.00 3.82
2863 4346 4.273480 CCACAAGAAGCGTAATAAGGATGG 59.727 45.833 0.00 0.00 0.00 3.51
2865 4348 5.099042 ACCACAAGAAGCGTAATAAGGAT 57.901 39.130 0.00 0.00 0.00 3.24
2871 4354 6.183360 CGAATAAAGACCACAAGAAGCGTAAT 60.183 38.462 0.00 0.00 0.00 1.89
2875 4358 3.181520 CCGAATAAAGACCACAAGAAGCG 60.182 47.826 0.00 0.00 0.00 4.68
2881 4364 4.580995 TCTTTTGCCGAATAAAGACCACAA 59.419 37.500 0.00 0.00 35.93 3.33
2882 4365 4.138290 TCTTTTGCCGAATAAAGACCACA 58.862 39.130 0.00 0.00 35.93 4.17
2883 4366 4.759516 TCTTTTGCCGAATAAAGACCAC 57.240 40.909 0.00 0.00 35.93 4.16
2887 4370 2.745281 CGGGTCTTTTGCCGAATAAAGA 59.255 45.455 0.00 0.00 37.88 2.52
2888 4371 2.731027 GCGGGTCTTTTGCCGAATAAAG 60.731 50.000 0.00 0.00 33.65 1.85
2889 4372 1.200484 GCGGGTCTTTTGCCGAATAAA 59.800 47.619 0.00 0.00 0.00 1.40
2890 4373 0.806241 GCGGGTCTTTTGCCGAATAA 59.194 50.000 0.00 0.00 0.00 1.40
2891 4374 0.321741 TGCGGGTCTTTTGCCGAATA 60.322 50.000 0.00 0.00 0.00 1.75
2892 4375 1.175983 TTGCGGGTCTTTTGCCGAAT 61.176 50.000 0.00 0.00 0.00 3.34
2893 4376 1.384989 TTTGCGGGTCTTTTGCCGAA 61.385 50.000 0.00 0.00 0.00 4.30
2894 4377 1.791103 CTTTGCGGGTCTTTTGCCGA 61.791 55.000 0.00 0.00 0.00 5.54
2895 4378 1.371635 CTTTGCGGGTCTTTTGCCG 60.372 57.895 0.00 0.00 0.00 5.69
2896 4379 0.104120 AACTTTGCGGGTCTTTTGCC 59.896 50.000 0.00 0.00 0.00 4.52
2897 4380 1.858458 GAAACTTTGCGGGTCTTTTGC 59.142 47.619 0.00 0.00 0.00 3.68
2898 4381 2.116366 CGAAACTTTGCGGGTCTTTTG 58.884 47.619 0.00 0.00 0.00 2.44
2899 4382 1.746787 ACGAAACTTTGCGGGTCTTTT 59.253 42.857 0.00 0.00 0.00 2.27
2900 4383 1.385528 ACGAAACTTTGCGGGTCTTT 58.614 45.000 0.00 0.00 0.00 2.52
2901 4384 2.140717 CTACGAAACTTTGCGGGTCTT 58.859 47.619 0.00 0.00 0.00 3.01
2902 4385 1.342174 TCTACGAAACTTTGCGGGTCT 59.658 47.619 0.00 0.00 0.00 3.85
2903 4386 1.458445 GTCTACGAAACTTTGCGGGTC 59.542 52.381 0.00 0.00 0.00 4.46
2904 4387 1.202557 TGTCTACGAAACTTTGCGGGT 60.203 47.619 0.00 0.00 0.00 5.28
2905 4388 1.504359 TGTCTACGAAACTTTGCGGG 58.496 50.000 0.00 0.00 0.00 6.13
2906 4389 3.185594 TGATTGTCTACGAAACTTTGCGG 59.814 43.478 0.00 0.00 0.00 5.69
2907 4390 4.383774 TGATTGTCTACGAAACTTTGCG 57.616 40.909 0.00 0.00 0.00 4.85
2908 4391 5.625311 CCTTTGATTGTCTACGAAACTTTGC 59.375 40.000 0.00 0.00 0.00 3.68
2909 4392 6.725246 ACCTTTGATTGTCTACGAAACTTTG 58.275 36.000 0.00 0.00 0.00 2.77
2910 4393 6.937436 ACCTTTGATTGTCTACGAAACTTT 57.063 33.333 0.00 0.00 0.00 2.66
2911 4394 7.439381 TCTACCTTTGATTGTCTACGAAACTT 58.561 34.615 0.00 0.00 0.00 2.66
2912 4395 6.989659 TCTACCTTTGATTGTCTACGAAACT 58.010 36.000 0.00 0.00 0.00 2.66
2913 4396 7.621633 GCTTCTACCTTTGATTGTCTACGAAAC 60.622 40.741 0.00 0.00 0.00 2.78
2914 4397 6.367969 GCTTCTACCTTTGATTGTCTACGAAA 59.632 38.462 0.00 0.00 0.00 3.46
2915 4398 5.867716 GCTTCTACCTTTGATTGTCTACGAA 59.132 40.000 0.00 0.00 0.00 3.85
2916 4399 5.047590 TGCTTCTACCTTTGATTGTCTACGA 60.048 40.000 0.00 0.00 0.00 3.43
2917 4400 5.168569 TGCTTCTACCTTTGATTGTCTACG 58.831 41.667 0.00 0.00 0.00 3.51
2918 4401 7.042389 GCTATGCTTCTACCTTTGATTGTCTAC 60.042 40.741 0.00 0.00 0.00 2.59
2919 4402 6.986817 GCTATGCTTCTACCTTTGATTGTCTA 59.013 38.462 0.00 0.00 0.00 2.59
2920 4403 5.819901 GCTATGCTTCTACCTTTGATTGTCT 59.180 40.000 0.00 0.00 0.00 3.41
2921 4404 5.819901 AGCTATGCTTCTACCTTTGATTGTC 59.180 40.000 0.00 0.00 33.89 3.18
2922 4405 5.749462 AGCTATGCTTCTACCTTTGATTGT 58.251 37.500 0.00 0.00 33.89 2.71
2923 4406 7.976135 ATAGCTATGCTTCTACCTTTGATTG 57.024 36.000 5.15 0.00 40.44 2.67
2924 4407 7.446625 CCAATAGCTATGCTTCTACCTTTGATT 59.553 37.037 7.09 0.00 40.44 2.57
2925 4408 6.939163 CCAATAGCTATGCTTCTACCTTTGAT 59.061 38.462 7.09 0.00 40.44 2.57
2926 4409 6.126768 ACCAATAGCTATGCTTCTACCTTTGA 60.127 38.462 7.09 0.00 40.44 2.69
2927 4410 6.058183 ACCAATAGCTATGCTTCTACCTTTG 58.942 40.000 7.09 0.00 40.44 2.77
2928 4411 6.253946 ACCAATAGCTATGCTTCTACCTTT 57.746 37.500 7.09 0.00 40.44 3.11
2929 4412 5.896073 ACCAATAGCTATGCTTCTACCTT 57.104 39.130 7.09 0.00 40.44 3.50
2930 4413 5.896073 AACCAATAGCTATGCTTCTACCT 57.104 39.130 7.09 0.00 40.44 3.08
2931 4414 6.944234 AAAACCAATAGCTATGCTTCTACC 57.056 37.500 7.09 0.00 40.44 3.18
2934 4417 9.413734 AGAATAAAAACCAATAGCTATGCTTCT 57.586 29.630 7.09 3.34 40.44 2.85
2937 4420 9.627123 TGTAGAATAAAAACCAATAGCTATGCT 57.373 29.630 7.09 0.00 43.41 3.79
2938 4421 9.665264 GTGTAGAATAAAAACCAATAGCTATGC 57.335 33.333 7.09 0.00 0.00 3.14
2942 4425 9.110502 GCTAGTGTAGAATAAAAACCAATAGCT 57.889 33.333 8.99 0.00 40.98 3.32
2943 4426 8.889717 TGCTAGTGTAGAATAAAAACCAATAGC 58.110 33.333 9.25 9.25 43.11 2.97
2945 4428 9.727859 TGTGCTAGTGTAGAATAAAAACCAATA 57.272 29.630 0.00 0.00 0.00 1.90
2946 4429 8.630054 TGTGCTAGTGTAGAATAAAAACCAAT 57.370 30.769 0.00 0.00 0.00 3.16
2947 4430 8.630054 ATGTGCTAGTGTAGAATAAAAACCAA 57.370 30.769 0.00 0.00 0.00 3.67
2948 4431 9.899661 ATATGTGCTAGTGTAGAATAAAAACCA 57.100 29.630 0.00 0.00 0.00 3.67
2968 4451 0.587242 GCAACGCACGAGCATATGTG 60.587 55.000 5.50 0.00 42.27 3.21
2969 4452 1.018752 TGCAACGCACGAGCATATGT 61.019 50.000 5.50 0.00 42.27 2.29
2970 4453 0.096802 TTGCAACGCACGAGCATATG 59.903 50.000 13.57 0.00 38.71 1.78
2971 4454 0.096976 GTTGCAACGCACGAGCATAT 59.903 50.000 14.90 0.00 38.71 1.78
2972 4455 1.495509 GTTGCAACGCACGAGCATA 59.504 52.632 14.90 5.07 38.71 3.14
2973 4456 2.252260 GTTGCAACGCACGAGCAT 59.748 55.556 14.90 0.00 38.71 3.79
2974 4457 4.292208 CGTTGCAACGCACGAGCA 62.292 61.111 35.89 9.96 46.06 4.26
2983 4466 6.619801 AAATAATATCTCTCCCGTTGCAAC 57.380 37.500 19.89 19.89 0.00 4.17
2984 4467 7.639113 AAAAATAATATCTCTCCCGTTGCAA 57.361 32.000 0.00 0.00 0.00 4.08
3005 4488 1.363744 CCGTTGCTTGTTGCCAAAAA 58.636 45.000 0.00 0.00 42.00 1.94
3006 4489 0.460987 CCCGTTGCTTGTTGCCAAAA 60.461 50.000 0.00 0.00 42.00 2.44
3007 4490 1.142748 CCCGTTGCTTGTTGCCAAA 59.857 52.632 0.00 0.00 42.00 3.28
3008 4491 1.733402 CTCCCGTTGCTTGTTGCCAA 61.733 55.000 0.00 0.00 42.00 4.52
3009 4492 2.124109 TCCCGTTGCTTGTTGCCA 60.124 55.556 0.00 0.00 42.00 4.92
3010 4493 1.452145 TTCTCCCGTTGCTTGTTGCC 61.452 55.000 0.00 0.00 42.00 4.52
3011 4494 0.383949 TTTCTCCCGTTGCTTGTTGC 59.616 50.000 0.00 0.00 43.25 4.17
3012 4495 4.497473 TTATTTCTCCCGTTGCTTGTTG 57.503 40.909 0.00 0.00 0.00 3.33
3013 4496 5.242838 TCAATTATTTCTCCCGTTGCTTGTT 59.757 36.000 0.00 0.00 0.00 2.83
3014 4497 4.764823 TCAATTATTTCTCCCGTTGCTTGT 59.235 37.500 0.00 0.00 0.00 3.16
3015 4498 5.095490 GTCAATTATTTCTCCCGTTGCTTG 58.905 41.667 0.00 0.00 0.00 4.01
3016 4499 4.142687 CGTCAATTATTTCTCCCGTTGCTT 60.143 41.667 0.00 0.00 0.00 3.91
3017 4500 3.374058 CGTCAATTATTTCTCCCGTTGCT 59.626 43.478 0.00 0.00 0.00 3.91
3018 4501 3.126343 ACGTCAATTATTTCTCCCGTTGC 59.874 43.478 0.00 0.00 0.00 4.17
3019 4502 4.153475 ACACGTCAATTATTTCTCCCGTTG 59.847 41.667 0.00 0.00 0.00 4.10
3020 4503 4.320870 ACACGTCAATTATTTCTCCCGTT 58.679 39.130 0.00 0.00 0.00 4.44
3021 4504 3.930848 GACACGTCAATTATTTCTCCCGT 59.069 43.478 0.00 0.00 0.00 5.28
3022 4505 3.308866 GGACACGTCAATTATTTCTCCCG 59.691 47.826 0.00 0.00 0.00 5.14
3023 4506 4.258543 TGGACACGTCAATTATTTCTCCC 58.741 43.478 0.00 0.00 0.00 4.30
3024 4507 5.584649 TGATGGACACGTCAATTATTTCTCC 59.415 40.000 0.00 0.00 39.59 3.71
3025 4508 6.662414 TGATGGACACGTCAATTATTTCTC 57.338 37.500 0.00 0.00 39.59 2.87
3049 4532 4.772100 CCTACCATTGTGGAGACCATTTTT 59.228 41.667 2.45 0.00 40.96 1.94
3050 4533 4.344104 CCTACCATTGTGGAGACCATTTT 58.656 43.478 2.45 0.00 40.96 1.82
3051 4534 3.877735 GCCTACCATTGTGGAGACCATTT 60.878 47.826 2.45 0.00 40.96 2.32
3052 4535 2.357154 GCCTACCATTGTGGAGACCATT 60.357 50.000 2.45 0.00 40.96 3.16
3053 4536 1.212935 GCCTACCATTGTGGAGACCAT 59.787 52.381 2.45 0.00 40.96 3.55
3054 4537 0.618458 GCCTACCATTGTGGAGACCA 59.382 55.000 2.45 0.00 40.96 4.02
3055 4538 0.462047 CGCCTACCATTGTGGAGACC 60.462 60.000 2.45 0.00 40.96 3.85
3056 4539 0.535335 TCGCCTACCATTGTGGAGAC 59.465 55.000 2.45 0.00 40.96 3.36
3057 4540 0.535335 GTCGCCTACCATTGTGGAGA 59.465 55.000 2.45 0.00 40.96 3.71
3058 4541 0.249120 TGTCGCCTACCATTGTGGAG 59.751 55.000 2.45 0.00 40.96 3.86
3059 4542 0.036765 GTGTCGCCTACCATTGTGGA 60.037 55.000 2.45 0.00 40.96 4.02
3060 4543 0.321210 TGTGTCGCCTACCATTGTGG 60.321 55.000 0.00 0.00 45.02 4.17
3061 4544 1.737838 ATGTGTCGCCTACCATTGTG 58.262 50.000 0.00 0.00 0.00 3.33
3062 4545 2.489938 AATGTGTCGCCTACCATTGT 57.510 45.000 0.00 0.00 31.67 2.71
3063 4546 3.312421 CCTTAATGTGTCGCCTACCATTG 59.688 47.826 0.00 0.00 33.63 2.82
3064 4547 3.199071 TCCTTAATGTGTCGCCTACCATT 59.801 43.478 0.00 0.00 34.96 3.16
3065 4548 2.769663 TCCTTAATGTGTCGCCTACCAT 59.230 45.455 0.00 0.00 0.00 3.55
3066 4549 2.167693 CTCCTTAATGTGTCGCCTACCA 59.832 50.000 0.00 0.00 0.00 3.25
3067 4550 2.167900 ACTCCTTAATGTGTCGCCTACC 59.832 50.000 0.00 0.00 0.00 3.18
3068 4551 3.521947 ACTCCTTAATGTGTCGCCTAC 57.478 47.619 0.00 0.00 0.00 3.18
3069 4552 3.857052 CAACTCCTTAATGTGTCGCCTA 58.143 45.455 0.00 0.00 0.00 3.93
3070 4553 2.699954 CAACTCCTTAATGTGTCGCCT 58.300 47.619 0.00 0.00 0.00 5.52
3071 4554 1.130561 GCAACTCCTTAATGTGTCGCC 59.869 52.381 0.00 0.00 0.00 5.54
3072 4555 1.201921 CGCAACTCCTTAATGTGTCGC 60.202 52.381 0.00 0.00 0.00 5.19
3073 4556 1.201921 GCGCAACTCCTTAATGTGTCG 60.202 52.381 0.30 0.00 0.00 4.35
3074 4557 1.201921 CGCGCAACTCCTTAATGTGTC 60.202 52.381 8.75 0.00 0.00 3.67
3075 4558 0.796312 CGCGCAACTCCTTAATGTGT 59.204 50.000 8.75 0.00 0.00 3.72
3076 4559 0.521242 GCGCGCAACTCCTTAATGTG 60.521 55.000 29.10 0.00 0.00 3.21
3077 4560 1.794222 GCGCGCAACTCCTTAATGT 59.206 52.632 29.10 0.00 0.00 2.71
3078 4561 1.296867 CGCGCGCAACTCCTTAATG 60.297 57.895 32.61 5.79 0.00 1.90
3079 4562 2.461110 CCGCGCGCAACTCCTTAAT 61.461 57.895 32.61 0.00 0.00 1.40
3080 4563 3.115892 CCGCGCGCAACTCCTTAA 61.116 61.111 32.61 0.00 0.00 1.85
3081 4564 4.367023 ACCGCGCGCAACTCCTTA 62.367 61.111 32.61 0.00 0.00 2.69
3085 4568 4.135493 GAAGACCGCGCGCAACTC 62.135 66.667 32.61 20.60 0.00 3.01
3086 4569 4.664677 AGAAGACCGCGCGCAACT 62.665 61.111 32.61 22.35 0.00 3.16
3087 4570 4.135493 GAGAAGACCGCGCGCAAC 62.135 66.667 32.61 20.42 0.00 4.17
3088 4571 4.656117 TGAGAAGACCGCGCGCAA 62.656 61.111 32.61 0.00 0.00 4.85
3091 4574 3.175240 CAGTGAGAAGACCGCGCG 61.175 66.667 25.67 25.67 0.00 6.86
3092 4575 2.564553 ATCCAGTGAGAAGACCGCGC 62.565 60.000 0.00 0.00 0.00 6.86
3093 4576 0.108615 AATCCAGTGAGAAGACCGCG 60.109 55.000 0.00 0.00 0.00 6.46
3094 4577 1.734465 CAAATCCAGTGAGAAGACCGC 59.266 52.381 0.00 0.00 0.00 5.68
3095 4578 3.045601 ACAAATCCAGTGAGAAGACCG 57.954 47.619 0.00 0.00 0.00 4.79
3096 4579 4.022849 CCAAACAAATCCAGTGAGAAGACC 60.023 45.833 0.00 0.00 0.00 3.85
3097 4580 4.557496 GCCAAACAAATCCAGTGAGAAGAC 60.557 45.833 0.00 0.00 0.00 3.01
3098 4581 3.569701 GCCAAACAAATCCAGTGAGAAGA 59.430 43.478 0.00 0.00 0.00 2.87
3099 4582 3.305608 GGCCAAACAAATCCAGTGAGAAG 60.306 47.826 0.00 0.00 0.00 2.85
3100 4583 2.627699 GGCCAAACAAATCCAGTGAGAA 59.372 45.455 0.00 0.00 0.00 2.87
3101 4584 2.238521 GGCCAAACAAATCCAGTGAGA 58.761 47.619 0.00 0.00 0.00 3.27
3102 4585 1.273327 GGGCCAAACAAATCCAGTGAG 59.727 52.381 4.39 0.00 0.00 3.51
3103 4586 1.337118 GGGCCAAACAAATCCAGTGA 58.663 50.000 4.39 0.00 0.00 3.41
3104 4587 0.038343 CGGGCCAAACAAATCCAGTG 60.038 55.000 4.39 0.00 0.00 3.66
3105 4588 0.469144 ACGGGCCAAACAAATCCAGT 60.469 50.000 4.39 0.00 0.00 4.00
3106 4589 0.038343 CACGGGCCAAACAAATCCAG 60.038 55.000 4.39 0.00 0.00 3.86
3107 4590 0.468214 TCACGGGCCAAACAAATCCA 60.468 50.000 4.39 0.00 0.00 3.41
3108 4591 0.676736 TTCACGGGCCAAACAAATCC 59.323 50.000 4.39 0.00 0.00 3.01
3109 4592 2.517650 TTTCACGGGCCAAACAAATC 57.482 45.000 4.39 0.00 0.00 2.17
3110 4593 2.632512 AGATTTCACGGGCCAAACAAAT 59.367 40.909 4.39 3.20 0.00 2.32
3111 4594 2.035632 AGATTTCACGGGCCAAACAAA 58.964 42.857 4.39 0.00 0.00 2.83
3112 4595 1.698506 AGATTTCACGGGCCAAACAA 58.301 45.000 4.39 0.00 0.00 2.83
3113 4596 1.339610 CAAGATTTCACGGGCCAAACA 59.660 47.619 4.39 0.00 0.00 2.83
3114 4597 1.611491 TCAAGATTTCACGGGCCAAAC 59.389 47.619 4.39 0.00 0.00 2.93
3115 4598 1.988293 TCAAGATTTCACGGGCCAAA 58.012 45.000 4.39 0.00 0.00 3.28
3116 4599 2.214376 ATCAAGATTTCACGGGCCAA 57.786 45.000 4.39 0.00 0.00 4.52
3117 4600 2.238646 ACTATCAAGATTTCACGGGCCA 59.761 45.455 4.39 0.00 0.00 5.36
3118 4601 2.614057 CACTATCAAGATTTCACGGGCC 59.386 50.000 0.00 0.00 0.00 5.80
3119 4602 2.032178 GCACTATCAAGATTTCACGGGC 59.968 50.000 0.00 0.00 0.00 6.13
3120 4603 2.614057 GGCACTATCAAGATTTCACGGG 59.386 50.000 0.00 0.00 0.00 5.28
3121 4604 2.285220 CGGCACTATCAAGATTTCACGG 59.715 50.000 0.00 0.00 0.00 4.94
3122 4605 2.285220 CCGGCACTATCAAGATTTCACG 59.715 50.000 0.00 0.00 0.00 4.35
3123 4606 2.614057 CCCGGCACTATCAAGATTTCAC 59.386 50.000 0.00 0.00 0.00 3.18
3124 4607 2.421388 CCCCGGCACTATCAAGATTTCA 60.421 50.000 0.00 0.00 0.00 2.69
3125 4608 2.222027 CCCCGGCACTATCAAGATTTC 58.778 52.381 0.00 0.00 0.00 2.17
3126 4609 1.564348 ACCCCGGCACTATCAAGATTT 59.436 47.619 0.00 0.00 0.00 2.17
3127 4610 1.213296 ACCCCGGCACTATCAAGATT 58.787 50.000 0.00 0.00 0.00 2.40
3128 4611 1.134098 CAACCCCGGCACTATCAAGAT 60.134 52.381 0.00 0.00 0.00 2.40
3129 4612 0.251916 CAACCCCGGCACTATCAAGA 59.748 55.000 0.00 0.00 0.00 3.02
3130 4613 0.748005 CCAACCCCGGCACTATCAAG 60.748 60.000 0.00 0.00 0.00 3.02
3131 4614 1.301623 CCAACCCCGGCACTATCAA 59.698 57.895 0.00 0.00 0.00 2.57
3132 4615 1.906105 GACCAACCCCGGCACTATCA 61.906 60.000 0.00 0.00 0.00 2.15
3133 4616 1.153229 GACCAACCCCGGCACTATC 60.153 63.158 0.00 0.00 0.00 2.08
3134 4617 2.995547 GACCAACCCCGGCACTAT 59.004 61.111 0.00 0.00 0.00 2.12
3135 4618 3.697747 CGACCAACCCCGGCACTA 61.698 66.667 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.