Multiple sequence alignment - TraesCS1B01G032900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G032900 chr1B 100.000 2234 0 0 1 2234 16122707 16124940 0.000000e+00 4126.0
1 TraesCS1B01G032900 chr1B 83.490 533 76 5 1638 2161 15715767 15715238 9.270000e-134 486.0
2 TraesCS1B01G032900 chr1B 80.310 645 110 12 894 1530 9556168 9555533 2.600000e-129 472.0
3 TraesCS1B01G032900 chr1B 88.953 344 38 0 891 1234 15878995 15879338 2.050000e-115 425.0
4 TraesCS1B01G032900 chr1B 82.957 399 63 4 493 890 147963386 147963780 2.730000e-94 355.0
5 TraesCS1B01G032900 chr1B 83.478 230 32 6 102 328 16122767 16122993 2.250000e-50 209.0
6 TraesCS1B01G032900 chr1B 83.478 230 32 6 61 287 16122808 16123034 2.250000e-50 209.0
7 TraesCS1B01G032900 chr1B 82.243 107 16 3 343 448 147963207 147963311 3.060000e-14 89.8
8 TraesCS1B01G032900 chr1D 79.853 1092 137 46 1191 2233 10660592 10659535 0.000000e+00 721.0
9 TraesCS1B01G032900 chr1D 82.471 599 86 14 891 1478 7822841 7823431 7.120000e-140 507.0
10 TraesCS1B01G032900 chr1D 91.944 360 29 0 891 1250 10660953 10660594 2.560000e-139 505.0
11 TraesCS1B01G032900 chr1D 81.345 595 94 13 891 1476 7608653 7609239 3.360000e-128 468.0
12 TraesCS1B01G032900 chr1D 83.861 316 46 3 1855 2170 10596351 10596041 1.680000e-76 296.0
13 TraesCS1B01G032900 chr1A 91.944 360 29 0 891 1250 12304013 12303654 2.560000e-139 505.0
14 TraesCS1B01G032900 chr1A 81.614 533 90 4 894 1422 8716015 8715487 3.410000e-118 435.0
15 TraesCS1B01G032900 chr1A 88.081 344 41 0 891 1234 12506310 12506653 2.070000e-110 409.0
16 TraesCS1B01G032900 chr1A 79.412 578 83 18 343 890 277828494 277829065 2.090000e-100 375.0
17 TraesCS1B01G032900 chr1A 85.965 342 48 0 896 1237 12208183 12207842 1.260000e-97 366.0
18 TraesCS1B01G032900 chr1A 78.783 575 82 19 343 890 277851543 277852104 1.270000e-92 350.0
19 TraesCS1B01G032900 chr1A 84.046 351 46 6 1855 2202 12193685 12193342 1.650000e-86 329.0
20 TraesCS1B01G032900 chr5A 81.338 568 80 14 343 890 411638192 411638753 2.630000e-119 438.0
21 TraesCS1B01G032900 chr5A 80.284 563 83 16 343 895 575894243 575894787 1.240000e-107 399.0
22 TraesCS1B01G032900 chr5D 80.104 578 80 18 343 890 75143823 75143251 4.470000e-107 398.0
23 TraesCS1B01G032900 chr4D 80.036 556 82 6 369 895 76703805 76703250 3.480000e-103 385.0
24 TraesCS1B01G032900 chr4D 83.967 368 57 2 529 895 334498548 334498182 3.530000e-93 351.0
25 TraesCS1B01G032900 chr6D 79.545 572 82 15 349 890 107527626 107527060 2.090000e-100 375.0
26 TraesCS1B01G032900 chr6D 83.740 369 58 2 528 895 97850930 97850563 4.570000e-92 348.0
27 TraesCS1B01G032900 chr6D 79.787 376 42 18 343 689 107403371 107403001 2.220000e-60 243.0
28 TraesCS1B01G032900 chr4B 78.893 578 87 15 343 890 372401227 372400655 2.110000e-95 359.0
29 TraesCS1B01G032900 chr2B 78.893 578 86 18 343 890 440228987 440228416 2.110000e-95 359.0
30 TraesCS1B01G032900 chr7D 78.177 362 45 18 349 681 633853802 633853446 1.350000e-47 200.0
31 TraesCS1B01G032900 chr7B 90.141 71 7 0 357 427 157229656 157229586 2.360000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G032900 chr1B 16122707 16124940 2233 False 1514.666667 4126 88.985333 1 2234 3 chr1B.!!$F2 2233
1 TraesCS1B01G032900 chr1B 15715238 15715767 529 True 486.000000 486 83.490000 1638 2161 1 chr1B.!!$R2 523
2 TraesCS1B01G032900 chr1B 9555533 9556168 635 True 472.000000 472 80.310000 894 1530 1 chr1B.!!$R1 636
3 TraesCS1B01G032900 chr1B 147963207 147963780 573 False 222.400000 355 82.600000 343 890 2 chr1B.!!$F3 547
4 TraesCS1B01G032900 chr1D 10659535 10660953 1418 True 613.000000 721 85.898500 891 2233 2 chr1D.!!$R2 1342
5 TraesCS1B01G032900 chr1D 7822841 7823431 590 False 507.000000 507 82.471000 891 1478 1 chr1D.!!$F2 587
6 TraesCS1B01G032900 chr1D 7608653 7609239 586 False 468.000000 468 81.345000 891 1476 1 chr1D.!!$F1 585
7 TraesCS1B01G032900 chr1A 8715487 8716015 528 True 435.000000 435 81.614000 894 1422 1 chr1A.!!$R1 528
8 TraesCS1B01G032900 chr1A 277828494 277829065 571 False 375.000000 375 79.412000 343 890 1 chr1A.!!$F2 547
9 TraesCS1B01G032900 chr1A 277851543 277852104 561 False 350.000000 350 78.783000 343 890 1 chr1A.!!$F3 547
10 TraesCS1B01G032900 chr5A 411638192 411638753 561 False 438.000000 438 81.338000 343 890 1 chr5A.!!$F1 547
11 TraesCS1B01G032900 chr5A 575894243 575894787 544 False 399.000000 399 80.284000 343 895 1 chr5A.!!$F2 552
12 TraesCS1B01G032900 chr5D 75143251 75143823 572 True 398.000000 398 80.104000 343 890 1 chr5D.!!$R1 547
13 TraesCS1B01G032900 chr4D 76703250 76703805 555 True 385.000000 385 80.036000 369 895 1 chr4D.!!$R1 526
14 TraesCS1B01G032900 chr6D 107527060 107527626 566 True 375.000000 375 79.545000 349 890 1 chr6D.!!$R3 541
15 TraesCS1B01G032900 chr4B 372400655 372401227 572 True 359.000000 359 78.893000 343 890 1 chr4B.!!$R1 547
16 TraesCS1B01G032900 chr2B 440228416 440228987 571 True 359.000000 359 78.893000 343 890 1 chr2B.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 659 0.100146 CCGTAGGCTCGGTGAAGTAC 59.9 60.0 14.64 0.0 46.14 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2026 0.038159 AGTACCAAGTCTGCTGTCGC 60.038 55.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.929819 GAGGACTCTCCACCTCTATTTC 57.070 50.000 0.00 0.00 46.28 2.17
24 25 4.542697 GAGGACTCTCCACCTCTATTTCT 58.457 47.826 0.00 0.00 46.28 2.52
25 26 4.954089 AGGACTCTCCACCTCTATTTCTT 58.046 43.478 0.00 0.00 39.61 2.52
26 27 4.714308 AGGACTCTCCACCTCTATTTCTTG 59.286 45.833 0.00 0.00 39.61 3.02
27 28 4.141824 GGACTCTCCACCTCTATTTCTTGG 60.142 50.000 0.00 0.00 36.28 3.61
28 29 4.689062 ACTCTCCACCTCTATTTCTTGGA 58.311 43.478 0.00 0.00 35.07 3.53
29 30 5.284582 ACTCTCCACCTCTATTTCTTGGAT 58.715 41.667 0.00 0.00 35.79 3.41
30 31 5.130145 ACTCTCCACCTCTATTTCTTGGATG 59.870 44.000 0.00 0.00 35.79 3.51
31 32 5.280499 TCTCCACCTCTATTTCTTGGATGA 58.720 41.667 0.00 0.00 35.79 2.92
32 33 5.365025 TCTCCACCTCTATTTCTTGGATGAG 59.635 44.000 0.00 0.00 35.79 2.90
33 34 5.280499 TCCACCTCTATTTCTTGGATGAGA 58.720 41.667 0.00 0.00 31.19 3.27
34 35 5.365025 TCCACCTCTATTTCTTGGATGAGAG 59.635 44.000 0.00 0.00 31.19 3.20
36 37 4.640364 CCTCTATTTCTTGGATGAGAGGC 58.360 47.826 2.96 0.00 42.59 4.70
37 38 4.347583 CCTCTATTTCTTGGATGAGAGGCT 59.652 45.833 2.96 0.00 42.59 4.58
38 39 5.541868 CCTCTATTTCTTGGATGAGAGGCTA 59.458 44.000 2.96 0.00 42.59 3.93
39 40 6.213195 CCTCTATTTCTTGGATGAGAGGCTAT 59.787 42.308 2.96 0.00 42.59 2.97
40 41 7.002250 TCTATTTCTTGGATGAGAGGCTATG 57.998 40.000 0.00 0.00 0.00 2.23
41 42 4.428294 TTTCTTGGATGAGAGGCTATGG 57.572 45.455 0.00 0.00 0.00 2.74
42 43 2.333069 TCTTGGATGAGAGGCTATGGG 58.667 52.381 0.00 0.00 0.00 4.00
43 44 1.350351 CTTGGATGAGAGGCTATGGGG 59.650 57.143 0.00 0.00 0.00 4.96
44 45 0.567687 TGGATGAGAGGCTATGGGGA 59.432 55.000 0.00 0.00 0.00 4.81
45 46 1.061424 TGGATGAGAGGCTATGGGGAA 60.061 52.381 0.00 0.00 0.00 3.97
46 47 2.057922 GGATGAGAGGCTATGGGGAAA 58.942 52.381 0.00 0.00 0.00 3.13
47 48 2.443255 GGATGAGAGGCTATGGGGAAAA 59.557 50.000 0.00 0.00 0.00 2.29
48 49 3.075134 GGATGAGAGGCTATGGGGAAAAT 59.925 47.826 0.00 0.00 0.00 1.82
49 50 4.289672 GGATGAGAGGCTATGGGGAAAATA 59.710 45.833 0.00 0.00 0.00 1.40
50 51 4.706842 TGAGAGGCTATGGGGAAAATAC 57.293 45.455 0.00 0.00 0.00 1.89
51 52 3.394606 TGAGAGGCTATGGGGAAAATACC 59.605 47.826 0.00 0.00 0.00 2.73
52 53 3.394606 GAGAGGCTATGGGGAAAATACCA 59.605 47.826 0.00 0.00 41.76 3.25
53 54 3.791545 AGAGGCTATGGGGAAAATACCAA 59.208 43.478 0.00 0.00 40.73 3.67
54 55 4.231890 AGAGGCTATGGGGAAAATACCAAA 59.768 41.667 0.00 0.00 40.73 3.28
55 56 4.954089 AGGCTATGGGGAAAATACCAAAA 58.046 39.130 0.00 0.00 40.73 2.44
56 57 5.537914 AGGCTATGGGGAAAATACCAAAAT 58.462 37.500 0.00 0.00 40.73 1.82
57 58 5.366477 AGGCTATGGGGAAAATACCAAAATG 59.634 40.000 0.00 0.00 40.73 2.32
58 59 5.056480 GCTATGGGGAAAATACCAAAATGC 58.944 41.667 0.00 0.00 40.73 3.56
59 60 3.990959 TGGGGAAAATACCAAAATGCC 57.009 42.857 0.00 0.00 32.89 4.40
60 61 2.573915 TGGGGAAAATACCAAAATGCCC 59.426 45.455 0.00 0.00 41.63 5.36
61 62 2.843730 GGGGAAAATACCAAAATGCCCT 59.156 45.455 0.00 0.00 38.51 5.19
62 63 3.118408 GGGGAAAATACCAAAATGCCCTC 60.118 47.826 0.00 0.00 38.51 4.30
63 64 3.517500 GGGAAAATACCAAAATGCCCTCA 59.482 43.478 0.00 0.00 0.00 3.86
64 65 4.164030 GGGAAAATACCAAAATGCCCTCAT 59.836 41.667 0.00 0.00 33.53 2.90
65 66 5.365314 GGGAAAATACCAAAATGCCCTCATA 59.635 40.000 0.00 0.00 31.46 2.15
66 67 6.043127 GGGAAAATACCAAAATGCCCTCATAT 59.957 38.462 0.00 0.00 31.46 1.78
67 68 7.420097 GGGAAAATACCAAAATGCCCTCATATT 60.420 37.037 0.00 0.00 31.46 1.28
68 69 8.646900 GGAAAATACCAAAATGCCCTCATATTA 58.353 33.333 0.00 0.00 31.46 0.98
69 70 9.696917 GAAAATACCAAAATGCCCTCATATTAG 57.303 33.333 0.00 0.00 31.46 1.73
70 71 8.782137 AAATACCAAAATGCCCTCATATTAGT 57.218 30.769 0.00 0.00 31.46 2.24
71 72 7.765695 ATACCAAAATGCCCTCATATTAGTG 57.234 36.000 0.00 0.00 31.46 2.74
72 73 5.518865 ACCAAAATGCCCTCATATTAGTGT 58.481 37.500 0.00 0.00 31.46 3.55
73 74 5.957774 ACCAAAATGCCCTCATATTAGTGTT 59.042 36.000 0.00 0.00 31.46 3.32
74 75 6.096846 ACCAAAATGCCCTCATATTAGTGTTC 59.903 38.462 0.00 0.00 31.46 3.18
75 76 6.461509 CCAAAATGCCCTCATATTAGTGTTCC 60.462 42.308 0.00 0.00 31.46 3.62
76 77 3.857157 TGCCCTCATATTAGTGTTCCC 57.143 47.619 0.00 0.00 0.00 3.97
77 78 3.119319 TGCCCTCATATTAGTGTTCCCA 58.881 45.455 0.00 0.00 0.00 4.37
78 79 3.118038 TGCCCTCATATTAGTGTTCCCAC 60.118 47.826 0.00 0.00 42.17 4.61
79 80 8.065633 AATGCCCTCATATTAGTGTTCCCACT 62.066 42.308 0.59 0.59 42.44 4.00
80 81 9.967715 AATGCCCTCATATTAGTGTTCCCACTG 62.968 44.444 5.64 0.00 41.12 3.66
92 93 5.997385 GTGTTCCCACTGTTTACAATAGTG 58.003 41.667 6.44 6.44 46.43 2.74
93 94 5.529800 GTGTTCCCACTGTTTACAATAGTGT 59.470 40.000 0.00 0.00 45.72 3.55
94 95 6.038936 GTGTTCCCACTGTTTACAATAGTGTT 59.961 38.462 0.00 0.00 45.72 3.32
95 96 6.603997 TGTTCCCACTGTTTACAATAGTGTTT 59.396 34.615 0.00 0.00 45.72 2.83
96 97 6.870971 TCCCACTGTTTACAATAGTGTTTC 57.129 37.500 0.00 0.00 45.72 2.78
97 98 6.358178 TCCCACTGTTTACAATAGTGTTTCA 58.642 36.000 0.00 0.00 45.72 2.69
98 99 6.261381 TCCCACTGTTTACAATAGTGTTTCAC 59.739 38.462 0.00 0.00 45.72 3.18
99 100 6.262273 CCCACTGTTTACAATAGTGTTTCACT 59.738 38.462 0.00 7.54 45.72 3.41
136 137 9.607285 GTGTTTCCACTATTTACAATAGTGTTG 57.393 33.333 24.87 15.84 46.04 3.33
137 138 8.293867 TGTTTCCACTATTTACAATAGTGTTGC 58.706 33.333 24.87 16.31 46.04 4.17
138 139 7.987750 TTCCACTATTTACAATAGTGTTGCA 57.012 32.000 24.87 10.87 46.04 4.08
139 140 7.372451 TCCACTATTTACAATAGTGTTGCAC 57.628 36.000 24.87 0.00 46.04 4.57
140 141 7.165485 TCCACTATTTACAATAGTGTTGCACT 58.835 34.615 24.87 6.99 46.04 4.40
181 182 9.787435 TTCCACTATTTACAATAGTGTTTGACT 57.213 29.630 24.87 0.00 46.04 3.41
191 192 8.948631 ACAATAGTGTTTGACTATCCATACAG 57.051 34.615 0.00 0.00 45.67 2.74
192 193 8.540388 ACAATAGTGTTTGACTATCCATACAGT 58.460 33.333 0.00 0.00 45.67 3.55
193 194 8.820933 CAATAGTGTTTGACTATCCATACAGTG 58.179 37.037 0.00 0.00 45.67 3.66
194 195 6.360370 AGTGTTTGACTATCCATACAGTGT 57.640 37.500 0.00 0.00 32.85 3.55
195 196 6.769512 AGTGTTTGACTATCCATACAGTGTT 58.230 36.000 0.00 0.00 32.85 3.32
196 197 7.224297 AGTGTTTGACTATCCATACAGTGTTT 58.776 34.615 0.00 0.00 32.85 2.83
197 198 7.387948 AGTGTTTGACTATCCATACAGTGTTTC 59.612 37.037 0.00 0.00 32.85 2.78
198 199 7.172532 GTGTTTGACTATCCATACAGTGTTTCA 59.827 37.037 0.00 0.00 30.71 2.69
199 200 7.172532 TGTTTGACTATCCATACAGTGTTTCAC 59.827 37.037 0.00 0.00 34.10 3.18
200 201 6.605471 TGACTATCCATACAGTGTTTCACT 57.395 37.500 0.00 0.00 46.51 3.41
201 202 7.712204 TGACTATCCATACAGTGTTTCACTA 57.288 36.000 0.00 0.00 43.43 2.74
202 203 8.306313 TGACTATCCATACAGTGTTTCACTAT 57.694 34.615 0.00 0.00 43.43 2.12
203 204 8.758829 TGACTATCCATACAGTGTTTCACTATT 58.241 33.333 0.00 0.00 43.43 1.73
204 205 9.250624 GACTATCCATACAGTGTTTCACTATTC 57.749 37.037 0.00 0.00 43.43 1.75
205 206 8.758829 ACTATCCATACAGTGTTTCACTATTCA 58.241 33.333 0.00 0.00 43.43 2.57
206 207 9.770097 CTATCCATACAGTGTTTCACTATTCAT 57.230 33.333 0.00 0.00 43.43 2.57
209 210 9.378551 TCCATACAGTGTTTCACTATTCATAAC 57.621 33.333 0.00 0.00 43.43 1.89
210 211 9.161629 CCATACAGTGTTTCACTATTCATAACA 57.838 33.333 0.00 0.00 43.43 2.41
214 215 9.066892 ACAGTGTTTCACTATTCATAACAATGT 57.933 29.630 11.92 11.92 46.57 2.71
215 216 9.897744 CAGTGTTTCACTATTCATAACAATGTT 57.102 29.630 3.43 3.43 43.43 2.71
241 242 9.787435 TTTCACTATTTACAATAGTGTTCCACT 57.213 29.630 25.44 2.09 46.93 4.00
254 255 4.870426 AGTGTTCCACTATTCATAACAGCG 59.130 41.667 0.00 0.00 43.46 5.18
255 256 4.630069 GTGTTCCACTATTCATAACAGCGT 59.370 41.667 0.00 0.00 31.19 5.07
256 257 5.121768 GTGTTCCACTATTCATAACAGCGTT 59.878 40.000 0.00 0.02 31.19 4.84
257 258 5.703592 TGTTCCACTATTCATAACAGCGTTT 59.296 36.000 0.00 0.00 0.00 3.60
258 259 6.128391 TGTTCCACTATTCATAACAGCGTTTC 60.128 38.462 0.00 0.00 0.00 2.78
259 260 4.873827 TCCACTATTCATAACAGCGTTTCC 59.126 41.667 0.00 0.00 0.00 3.13
260 261 4.634004 CCACTATTCATAACAGCGTTTCCA 59.366 41.667 0.00 0.00 0.00 3.53
261 262 5.447279 CCACTATTCATAACAGCGTTTCCAC 60.447 44.000 0.00 0.00 0.00 4.02
262 263 5.351465 CACTATTCATAACAGCGTTTCCACT 59.649 40.000 0.00 0.00 0.00 4.00
263 264 6.533723 CACTATTCATAACAGCGTTTCCACTA 59.466 38.462 0.00 0.00 0.00 2.74
264 265 7.224753 CACTATTCATAACAGCGTTTCCACTAT 59.775 37.037 0.00 0.00 0.00 2.12
265 266 7.769044 ACTATTCATAACAGCGTTTCCACTATT 59.231 33.333 0.00 0.00 0.00 1.73
266 267 6.811253 TTCATAACAGCGTTTCCACTATTT 57.189 33.333 0.00 0.00 0.00 1.40
267 268 7.908827 TTCATAACAGCGTTTCCACTATTTA 57.091 32.000 0.00 0.00 0.00 1.40
268 269 7.298507 TCATAACAGCGTTTCCACTATTTAC 57.701 36.000 0.00 0.00 0.00 2.01
269 270 6.874664 TCATAACAGCGTTTCCACTATTTACA 59.125 34.615 0.00 0.00 0.00 2.41
270 271 7.388224 TCATAACAGCGTTTCCACTATTTACAA 59.612 33.333 0.00 0.00 0.00 2.41
271 272 6.569179 AACAGCGTTTCCACTATTTACAAT 57.431 33.333 0.00 0.00 0.00 2.71
272 273 7.675962 AACAGCGTTTCCACTATTTACAATA 57.324 32.000 0.00 0.00 0.00 1.90
273 274 7.303634 ACAGCGTTTCCACTATTTACAATAG 57.696 36.000 2.52 2.52 0.00 1.73
274 275 6.877322 ACAGCGTTTCCACTATTTACAATAGT 59.123 34.615 3.71 3.71 35.39 2.12
275 276 7.148474 ACAGCGTTTCCACTATTTACAATAGTG 60.148 37.037 22.06 22.06 46.67 2.74
276 277 6.877322 AGCGTTTCCACTATTTACAATAGTGT 59.123 34.615 24.87 0.00 46.04 3.55
277 278 7.389607 AGCGTTTCCACTATTTACAATAGTGTT 59.610 33.333 24.87 5.08 46.04 3.32
278 279 7.691050 GCGTTTCCACTATTTACAATAGTGTTC 59.309 37.037 24.87 15.30 46.04 3.18
279 280 8.173130 CGTTTCCACTATTTACAATAGTGTTCC 58.827 37.037 24.87 14.18 46.04 3.62
280 281 9.005777 GTTTCCACTATTTACAATAGTGTTCCA 57.994 33.333 24.87 10.94 46.04 3.53
281 282 8.556213 TTCCACTATTTACAATAGTGTTCCAC 57.444 34.615 24.87 0.00 46.04 4.02
282 283 7.913789 TCCACTATTTACAATAGTGTTCCACT 58.086 34.615 24.87 2.09 46.04 4.00
307 308 9.877178 CTATTCTTAATAGTGTTCCACTGTTCT 57.123 33.333 9.24 0.00 45.01 3.01
315 316 9.436957 AATAGTGTTCCACTGTTCTTAATAGTG 57.563 33.333 7.13 8.95 45.01 2.74
316 317 6.827727 AGTGTTCCACTGTTCTTAATAGTGT 58.172 36.000 13.30 0.00 45.72 3.55
317 318 7.280356 AGTGTTCCACTGTTCTTAATAGTGTT 58.720 34.615 13.30 0.00 45.72 3.32
318 319 7.773690 AGTGTTCCACTGTTCTTAATAGTGTTT 59.226 33.333 13.30 0.00 45.72 2.83
319 320 8.068380 GTGTTCCACTGTTCTTAATAGTGTTTC 58.932 37.037 13.30 5.85 45.72 2.78
320 321 7.227910 TGTTCCACTGTTCTTAATAGTGTTTCC 59.772 37.037 13.30 2.62 45.72 3.13
321 322 6.833041 TCCACTGTTCTTAATAGTGTTTCCA 58.167 36.000 13.30 0.00 45.72 3.53
322 323 6.708949 TCCACTGTTCTTAATAGTGTTTCCAC 59.291 38.462 13.30 0.00 45.72 4.02
323 324 6.072673 CCACTGTTCTTAATAGTGTTTCCACC 60.073 42.308 13.30 0.00 45.72 4.61
324 325 6.485313 CACTGTTCTTAATAGTGTTTCCACCA 59.515 38.462 8.01 0.00 43.22 4.17
325 326 7.174946 CACTGTTCTTAATAGTGTTTCCACCAT 59.825 37.037 8.01 0.00 43.22 3.55
326 327 7.724061 ACTGTTCTTAATAGTGTTTCCACCATT 59.276 33.333 0.00 0.00 42.88 3.16
327 328 8.106247 TGTTCTTAATAGTGTTTCCACCATTC 57.894 34.615 0.00 0.00 42.88 2.67
328 329 7.721842 TGTTCTTAATAGTGTTTCCACCATTCA 59.278 33.333 0.00 0.00 42.88 2.57
329 330 8.739972 GTTCTTAATAGTGTTTCCACCATTCAT 58.260 33.333 0.00 0.00 42.88 2.57
330 331 8.279970 TCTTAATAGTGTTTCCACCATTCATG 57.720 34.615 0.00 0.00 42.88 3.07
331 332 8.106462 TCTTAATAGTGTTTCCACCATTCATGA 58.894 33.333 0.00 0.00 42.88 3.07
332 333 6.764308 AATAGTGTTTCCACCATTCATGAG 57.236 37.500 0.00 0.00 42.88 2.90
333 334 4.371624 AGTGTTTCCACCATTCATGAGA 57.628 40.909 0.00 0.00 42.88 3.27
334 335 4.927049 AGTGTTTCCACCATTCATGAGAT 58.073 39.130 0.00 0.00 42.88 2.75
335 336 6.065976 AGTGTTTCCACCATTCATGAGATA 57.934 37.500 0.00 0.00 42.88 1.98
336 337 6.666678 AGTGTTTCCACCATTCATGAGATAT 58.333 36.000 0.00 0.00 42.88 1.63
337 338 7.121382 AGTGTTTCCACCATTCATGAGATATT 58.879 34.615 0.00 0.00 42.88 1.28
338 339 7.616935 AGTGTTTCCACCATTCATGAGATATTT 59.383 33.333 0.00 0.00 42.88 1.40
339 340 8.253113 GTGTTTCCACCATTCATGAGATATTTT 58.747 33.333 0.00 0.00 35.44 1.82
340 341 8.469200 TGTTTCCACCATTCATGAGATATTTTC 58.531 33.333 0.00 0.00 0.00 2.29
341 342 8.689972 GTTTCCACCATTCATGAGATATTTTCT 58.310 33.333 0.00 0.00 37.41 2.52
417 420 8.665643 AAATATATTCACCGTCCGTTTAATCA 57.334 30.769 0.00 0.00 0.00 2.57
459 470 1.901833 GAACATTTCTGGCACCCCAAT 59.098 47.619 0.00 0.00 41.58 3.16
463 477 1.631405 TTTCTGGCACCCCAATTCTG 58.369 50.000 0.00 0.00 41.58 3.02
467 482 1.076549 GGCACCCCAATTCTGGACA 59.923 57.895 0.00 0.00 46.92 4.02
522 539 4.884744 TCTCTGAAACATTTCCGGTTTTCA 59.115 37.500 0.00 9.14 38.50 2.69
525 563 5.126384 TCTGAAACATTTCCGGTTTTCACTT 59.874 36.000 0.00 0.00 38.50 3.16
556 594 0.389817 CGGCAACAATCTCTCGGACA 60.390 55.000 0.00 0.00 0.00 4.02
621 659 0.100146 CCGTAGGCTCGGTGAAGTAC 59.900 60.000 14.64 0.00 46.14 2.73
632 672 2.674177 CGGTGAAGTACAGACATGACCC 60.674 54.545 0.00 0.00 0.00 4.46
662 702 7.444299 TCATTCCGATCAATGATCAATAGTGA 58.556 34.615 21.51 14.45 37.77 3.41
703 743 4.743124 TGATCCCTATACCCACACGAATA 58.257 43.478 0.00 0.00 0.00 1.75
740 780 8.508875 CAAACCTATAATTACCGAGTGTTGTTT 58.491 33.333 0.00 0.00 0.00 2.83
741 781 7.605410 ACCTATAATTACCGAGTGTTGTTTG 57.395 36.000 0.00 0.00 0.00 2.93
773 817 9.219603 CTTCATGATATGTTACAAATACCCGAT 57.780 33.333 0.00 0.00 0.00 4.18
788 832 4.503714 ACCCGATGTGAGATTTAATGGT 57.496 40.909 0.00 0.00 0.00 3.55
791 835 6.601332 ACCCGATGTGAGATTTAATGGTATT 58.399 36.000 0.00 0.00 0.00 1.89
799 843 6.018180 GTGAGATTTAATGGTATTCCCGTGAC 60.018 42.308 0.00 0.00 35.15 3.67
838 883 2.419667 TGCTAGTTTCCTTGTTACCGC 58.580 47.619 0.00 0.00 0.00 5.68
845 890 3.974871 TTCCTTGTTACCGCTTTTGTC 57.025 42.857 0.00 0.00 0.00 3.18
855 900 3.288092 ACCGCTTTTGTCCTCTTTTCTT 58.712 40.909 0.00 0.00 0.00 2.52
925 970 2.694628 CTGCCAGCTCTCACTTATCTCT 59.305 50.000 0.00 0.00 0.00 3.10
986 1031 0.952984 GCAGGGTGCTTCTGTCAGTC 60.953 60.000 0.00 0.00 40.96 3.51
1024 1069 1.016627 GCGCATGCCTAATGTCAAGA 58.983 50.000 13.15 0.00 38.65 3.02
1064 1109 0.740149 GCCATTCCATGCGTTGATGA 59.260 50.000 0.00 0.00 0.00 2.92
1116 1161 1.070445 GGTCCCTCATGGCATCGAG 59.930 63.158 15.62 15.62 0.00 4.04
1119 1164 1.300465 CCCTCATGGCATCGAGTCG 60.300 63.158 18.90 6.09 0.00 4.18
1128 1173 1.513158 CATCGAGTCGCTTGGGTCT 59.487 57.895 7.92 0.00 0.00 3.85
1150 1195 1.627329 TCAAGAAGCTCTGGATGCTGT 59.373 47.619 0.00 0.00 41.03 4.40
1181 1226 0.322008 GACTTCAAGGCTGACTGGGG 60.322 60.000 0.00 0.00 0.00 4.96
1238 1344 2.028337 GCTCCGTGCCTAGCTAGC 59.972 66.667 15.74 6.62 35.80 3.42
1240 1346 1.361993 CTCCGTGCCTAGCTAGCAG 59.638 63.158 18.83 11.93 41.87 4.24
1272 1379 7.766283 ACACTCTACCTACTTCGGTAATAAAC 58.234 38.462 0.00 0.00 38.96 2.01
1273 1380 7.148000 ACACTCTACCTACTTCGGTAATAAACC 60.148 40.741 0.00 0.00 45.77 3.27
1313 1420 9.370126 CTTATAAAATATAAGTGTGCACGCTTC 57.630 33.333 40.51 18.56 44.63 3.86
1321 1428 5.470845 AAGTGTGCACGCTTCTAATTATC 57.529 39.130 34.18 0.00 42.46 1.75
1327 1434 6.035650 TGTGCACGCTTCTAATTATCTGTAAC 59.964 38.462 13.13 0.00 0.00 2.50
1333 1440 6.910972 CGCTTCTAATTATCTGTAACGAGTCA 59.089 38.462 0.00 0.00 0.00 3.41
1345 1452 5.886992 TGTAACGAGTCATATGGTACTGTG 58.113 41.667 2.13 0.00 0.00 3.66
1363 1470 6.142818 ACTGTGATAGTATCAACAGCTCTC 57.857 41.667 26.10 11.75 41.69 3.20
1397 1504 6.732154 GCAACTGCATCTTATCATGTATTGT 58.268 36.000 0.00 0.00 41.59 2.71
1399 1506 7.166970 GCAACTGCATCTTATCATGTATTGTTG 59.833 37.037 0.00 0.00 41.59 3.33
1422 1537 5.929992 TGGTTCTGTAATAACTCCTGAAACG 59.070 40.000 0.00 0.00 0.00 3.60
1423 1538 5.350640 GGTTCTGTAATAACTCCTGAAACGG 59.649 44.000 0.00 0.00 0.00 4.44
1426 1541 2.124277 AATAACTCCTGAAACGGGGC 57.876 50.000 0.00 0.00 0.00 5.80
1427 1542 0.988832 ATAACTCCTGAAACGGGGCA 59.011 50.000 0.00 0.00 0.00 5.36
1531 1652 6.679327 TGGTATCATAGATAGACCGATTCG 57.321 41.667 0.00 0.00 32.55 3.34
1533 1654 6.315642 TGGTATCATAGATAGACCGATTCGAC 59.684 42.308 7.83 1.47 32.55 4.20
1535 1656 4.648651 TCATAGATAGACCGATTCGACCA 58.351 43.478 7.83 0.00 0.00 4.02
1539 1660 2.288961 TAGACCGATTCGACCAAAGC 57.711 50.000 7.83 0.00 0.00 3.51
1542 1663 2.167693 AGACCGATTCGACCAAAGCATA 59.832 45.455 7.83 0.00 0.00 3.14
1553 1681 5.009310 TCGACCAAAGCATATATGTACTCGT 59.991 40.000 14.14 5.74 0.00 4.18
1554 1682 5.117135 CGACCAAAGCATATATGTACTCGTG 59.883 44.000 14.14 6.00 0.00 4.35
1560 1688 5.645624 AGCATATATGTACTCGTGCATCTC 58.354 41.667 14.14 0.00 37.16 2.75
1564 1692 7.534282 CATATATGTACTCGTGCATCTCTCTT 58.466 38.462 4.43 0.00 37.16 2.85
1565 1693 4.727507 ATGTACTCGTGCATCTCTCTTT 57.272 40.909 0.00 0.00 29.89 2.52
1572 1700 4.748892 TCGTGCATCTCTCTTTTTCCTAG 58.251 43.478 0.00 0.00 0.00 3.02
1573 1701 4.220821 TCGTGCATCTCTCTTTTTCCTAGT 59.779 41.667 0.00 0.00 0.00 2.57
1574 1702 5.417894 TCGTGCATCTCTCTTTTTCCTAGTA 59.582 40.000 0.00 0.00 0.00 1.82
1575 1703 6.096987 TCGTGCATCTCTCTTTTTCCTAGTAT 59.903 38.462 0.00 0.00 0.00 2.12
1576 1704 7.284716 TCGTGCATCTCTCTTTTTCCTAGTATA 59.715 37.037 0.00 0.00 0.00 1.47
1622 1750 5.594317 ACAAGGAAACATATCATTAGCCACC 59.406 40.000 0.00 0.00 0.00 4.61
1694 1822 6.313744 ACTTTGGTTAACAAGTATGCTCAC 57.686 37.500 8.10 0.00 40.82 3.51
1696 1824 3.997762 TGGTTAACAAGTATGCTCACGT 58.002 40.909 8.10 0.00 0.00 4.49
1732 1865 6.769512 ACTGGCATACATATAACTACCAAGG 58.230 40.000 0.00 0.00 0.00 3.61
1733 1866 6.329197 ACTGGCATACATATAACTACCAAGGT 59.671 38.462 0.00 0.00 0.00 3.50
1734 1867 7.144234 TGGCATACATATAACTACCAAGGTT 57.856 36.000 0.00 0.00 0.00 3.50
1743 1876 9.106070 CATATAACTACCAAGGTTTGAACTACC 57.894 37.037 0.00 0.00 35.85 3.18
1762 1895 7.506328 ACTACCTATGACCAAACTGAAAAAC 57.494 36.000 0.00 0.00 0.00 2.43
1765 1898 6.126409 ACCTATGACCAAACTGAAAAACTGA 58.874 36.000 0.00 0.00 0.00 3.41
1779 1912 3.963383 AAACTGAACACACACGGATTC 57.037 42.857 0.00 0.00 0.00 2.52
1780 1913 2.613026 ACTGAACACACACGGATTCA 57.387 45.000 0.00 0.00 0.00 2.57
1788 1921 1.102978 CACACGGATTCAATTCCCCC 58.897 55.000 0.00 0.00 31.61 5.40
1793 1926 0.823769 GGATTCAATTCCCCCTCGCC 60.824 60.000 0.00 0.00 0.00 5.54
1799 1932 0.042581 AATTCCCCCTCGCCCAATTT 59.957 50.000 0.00 0.00 0.00 1.82
1803 1936 1.819632 CCCCTCGCCCAATTTCTCG 60.820 63.158 0.00 0.00 0.00 4.04
1817 1952 0.038251 TTCTCGCACACAGCTGTAGG 60.038 55.000 21.20 15.51 42.61 3.18
1823 1958 1.674221 GCACACAGCTGTAGGAAGGAG 60.674 57.143 21.20 7.04 41.15 3.69
1827 1962 3.007398 ACACAGCTGTAGGAAGGAGAAAG 59.993 47.826 21.20 4.67 0.00 2.62
1828 1963 2.569404 ACAGCTGTAGGAAGGAGAAAGG 59.431 50.000 20.16 0.00 0.00 3.11
1832 1967 3.445987 CTGTAGGAAGGAGAAAGGGAGT 58.554 50.000 0.00 0.00 0.00 3.85
1833 1968 3.173965 TGTAGGAAGGAGAAAGGGAGTG 58.826 50.000 0.00 0.00 0.00 3.51
1839 1974 1.074566 AGGAGAAAGGGAGTGGCAAAG 59.925 52.381 0.00 0.00 0.00 2.77
1842 1977 1.533994 AAAGGGAGTGGCAAAGGGC 60.534 57.895 0.00 0.00 43.74 5.19
1866 2008 1.301716 AGCGGTGCAGTAGTGGTTG 60.302 57.895 0.00 0.00 0.00 3.77
1875 2017 1.663702 GTAGTGGTTGCTGCGTCGT 60.664 57.895 0.00 0.00 0.00 4.34
1902 2044 2.446341 GCGACAGCAGACTTGGTAC 58.554 57.895 0.00 0.00 44.35 3.34
1905 2047 2.329379 CGACAGCAGACTTGGTACTTC 58.671 52.381 0.00 0.00 32.80 3.01
1907 2049 3.321497 GACAGCAGACTTGGTACTTCAG 58.679 50.000 0.00 0.00 32.80 3.02
1919 2061 2.769095 GGTACTTCAGAGGCTTCAGGAT 59.231 50.000 0.00 0.00 0.00 3.24
1920 2062 3.181470 GGTACTTCAGAGGCTTCAGGATC 60.181 52.174 0.00 0.00 0.00 3.36
1933 2075 3.101643 TCAGGATCGAAGGAAGAGGAA 57.898 47.619 0.00 0.00 0.00 3.36
1965 2107 0.737367 CGCCGCTGAATCAGAGAACA 60.737 55.000 15.38 0.00 33.20 3.18
1972 2114 4.614306 CGCTGAATCAGAGAACATTTGCAA 60.614 41.667 15.38 0.00 33.20 4.08
1973 2115 5.408356 GCTGAATCAGAGAACATTTGCAAT 58.592 37.500 15.38 0.00 32.44 3.56
1984 2126 7.335422 AGAGAACATTTGCAATCGATTAGTTCT 59.665 33.333 23.16 23.16 43.91 3.01
1997 2139 5.585445 TCGATTAGTTCTAGGTGAGTGACTC 59.415 44.000 5.47 5.47 0.00 3.36
2004 2146 6.214005 AGTTCTAGGTGAGTGACTCTACTACT 59.786 42.308 14.42 9.05 0.00 2.57
2014 2156 5.298777 AGTGACTCTACTACTTTCGTGTGTT 59.701 40.000 0.00 0.00 0.00 3.32
2015 2157 5.975939 GTGACTCTACTACTTTCGTGTGTTT 59.024 40.000 0.00 0.00 0.00 2.83
2016 2158 6.142002 GTGACTCTACTACTTTCGTGTGTTTC 59.858 42.308 0.00 0.00 0.00 2.78
2028 2170 3.069586 TCGTGTGTTTCAGATGGAACTCT 59.930 43.478 5.62 0.00 34.56 3.24
2050 2192 4.437682 TGAATATCTCCTGCCCGATTTT 57.562 40.909 0.00 0.00 0.00 1.82
2051 2193 4.136796 TGAATATCTCCTGCCCGATTTTG 58.863 43.478 0.00 0.00 0.00 2.44
2065 2207 4.279922 CCCGATTTTGGTTGGTTTTCTACT 59.720 41.667 0.00 0.00 0.00 2.57
2074 2216 6.517605 TGGTTGGTTTTCTACTAAATTTGGC 58.482 36.000 0.00 0.00 0.00 4.52
2091 2233 2.924105 GCTTGCAGGCAGGGTTGTC 61.924 63.158 16.98 0.00 0.00 3.18
2096 2238 1.961277 CAGGCAGGGTTGTCACGTC 60.961 63.158 0.00 0.00 0.00 4.34
2101 2243 1.254026 CAGGGTTGTCACGTCTAGGA 58.746 55.000 0.00 0.00 0.00 2.94
2106 2248 2.753452 GGTTGTCACGTCTAGGATCTCA 59.247 50.000 0.00 0.00 0.00 3.27
2131 2273 8.687301 CAGAAATTCGGTTATGTTTTGTGTTAC 58.313 33.333 0.00 0.00 0.00 2.50
2134 2276 9.589111 AAATTCGGTTATGTTTTGTGTTACTTT 57.411 25.926 0.00 0.00 0.00 2.66
2147 2289 7.811117 TTGTGTTACTTTAACCAGTATGCTT 57.189 32.000 0.00 0.00 37.88 3.91
2167 2309 4.461198 CTTGGTTCTGAGTACTTGGGTTT 58.539 43.478 0.00 0.00 0.00 3.27
2195 2340 6.368791 TGAATGTAGCTTGTTCTGTGTGATAC 59.631 38.462 0.00 0.00 0.00 2.24
2210 2366 1.614903 TGATACGTTGGACCGTGAGTT 59.385 47.619 0.00 0.00 41.92 3.01
2222 2378 3.432378 ACCGTGAGTTCTAGAGTTCCAT 58.568 45.455 0.00 0.00 0.00 3.41
2230 2386 9.871238 GTGAGTTCTAGAGTTCCATATAAACAA 57.129 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.618378 AGAAATAGAGGTGGAGAGTCCT 57.382 45.455 0.00 0.00 37.46 3.85
4 5 4.141824 CCAAGAAATAGAGGTGGAGAGTCC 60.142 50.000 0.00 0.00 36.96 3.85
5 6 4.712337 TCCAAGAAATAGAGGTGGAGAGTC 59.288 45.833 0.00 0.00 0.00 3.36
6 7 4.689062 TCCAAGAAATAGAGGTGGAGAGT 58.311 43.478 0.00 0.00 0.00 3.24
7 8 5.365025 TCATCCAAGAAATAGAGGTGGAGAG 59.635 44.000 0.00 0.00 0.00 3.20
8 9 5.280499 TCATCCAAGAAATAGAGGTGGAGA 58.720 41.667 0.00 0.00 0.00 3.71
9 10 5.365025 TCTCATCCAAGAAATAGAGGTGGAG 59.635 44.000 0.00 0.00 0.00 3.86
10 11 5.280499 TCTCATCCAAGAAATAGAGGTGGA 58.720 41.667 0.00 0.00 0.00 4.02
11 12 5.454471 CCTCTCATCCAAGAAATAGAGGTGG 60.454 48.000 7.83 0.00 43.33 4.61
12 13 5.609423 CCTCTCATCCAAGAAATAGAGGTG 58.391 45.833 7.83 0.00 43.33 4.00
13 14 5.885449 CCTCTCATCCAAGAAATAGAGGT 57.115 43.478 7.83 0.00 43.33 3.85
15 16 5.549742 AGCCTCTCATCCAAGAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
16 17 6.013898 CCATAGCCTCTCATCCAAGAAATAGA 60.014 42.308 0.00 0.00 0.00 1.98
17 18 6.171921 CCATAGCCTCTCATCCAAGAAATAG 58.828 44.000 0.00 0.00 0.00 1.73
18 19 5.013495 CCCATAGCCTCTCATCCAAGAAATA 59.987 44.000 0.00 0.00 0.00 1.40
19 20 4.202545 CCCATAGCCTCTCATCCAAGAAAT 60.203 45.833 0.00 0.00 0.00 2.17
20 21 3.137176 CCCATAGCCTCTCATCCAAGAAA 59.863 47.826 0.00 0.00 0.00 2.52
21 22 2.707791 CCCATAGCCTCTCATCCAAGAA 59.292 50.000 0.00 0.00 0.00 2.52
22 23 2.333069 CCCATAGCCTCTCATCCAAGA 58.667 52.381 0.00 0.00 0.00 3.02
23 24 1.350351 CCCCATAGCCTCTCATCCAAG 59.650 57.143 0.00 0.00 0.00 3.61
24 25 1.061424 TCCCCATAGCCTCTCATCCAA 60.061 52.381 0.00 0.00 0.00 3.53
25 26 0.567687 TCCCCATAGCCTCTCATCCA 59.432 55.000 0.00 0.00 0.00 3.41
26 27 1.734655 TTCCCCATAGCCTCTCATCC 58.265 55.000 0.00 0.00 0.00 3.51
27 28 3.864789 TTTTCCCCATAGCCTCTCATC 57.135 47.619 0.00 0.00 0.00 2.92
28 29 4.043435 GGTATTTTCCCCATAGCCTCTCAT 59.957 45.833 0.00 0.00 0.00 2.90
29 30 3.394606 GGTATTTTCCCCATAGCCTCTCA 59.605 47.826 0.00 0.00 0.00 3.27
30 31 3.394606 TGGTATTTTCCCCATAGCCTCTC 59.605 47.826 0.00 0.00 0.00 3.20
31 32 3.403322 TGGTATTTTCCCCATAGCCTCT 58.597 45.455 0.00 0.00 0.00 3.69
32 33 3.876309 TGGTATTTTCCCCATAGCCTC 57.124 47.619 0.00 0.00 0.00 4.70
33 34 4.618378 TTTGGTATTTTCCCCATAGCCT 57.382 40.909 0.00 0.00 0.00 4.58
34 35 5.610398 CATTTTGGTATTTTCCCCATAGCC 58.390 41.667 0.00 0.00 0.00 3.93
35 36 5.056480 GCATTTTGGTATTTTCCCCATAGC 58.944 41.667 0.00 0.00 0.00 2.97
36 37 5.454613 GGGCATTTTGGTATTTTCCCCATAG 60.455 44.000 0.00 0.00 0.00 2.23
37 38 4.410555 GGGCATTTTGGTATTTTCCCCATA 59.589 41.667 0.00 0.00 0.00 2.74
38 39 3.201930 GGGCATTTTGGTATTTTCCCCAT 59.798 43.478 0.00 0.00 0.00 4.00
39 40 2.573915 GGGCATTTTGGTATTTTCCCCA 59.426 45.455 0.00 0.00 0.00 4.96
40 41 2.843730 AGGGCATTTTGGTATTTTCCCC 59.156 45.455 0.00 0.00 33.06 4.81
41 42 3.517500 TGAGGGCATTTTGGTATTTTCCC 59.482 43.478 0.00 0.00 0.00 3.97
42 43 4.817318 TGAGGGCATTTTGGTATTTTCC 57.183 40.909 0.00 0.00 0.00 3.13
43 44 9.696917 CTAATATGAGGGCATTTTGGTATTTTC 57.303 33.333 0.00 0.00 35.94 2.29
44 45 9.212593 ACTAATATGAGGGCATTTTGGTATTTT 57.787 29.630 0.00 0.00 36.14 1.82
45 46 8.641541 CACTAATATGAGGGCATTTTGGTATTT 58.358 33.333 0.00 0.00 35.89 1.40
46 47 7.784550 ACACTAATATGAGGGCATTTTGGTATT 59.215 33.333 0.00 0.00 35.89 1.89
47 48 7.297614 ACACTAATATGAGGGCATTTTGGTAT 58.702 34.615 0.00 0.00 35.89 2.73
48 49 6.668645 ACACTAATATGAGGGCATTTTGGTA 58.331 36.000 0.00 0.00 35.89 3.25
49 50 5.518865 ACACTAATATGAGGGCATTTTGGT 58.481 37.500 0.00 0.00 37.53 3.67
50 51 6.461509 GGAACACTAATATGAGGGCATTTTGG 60.462 42.308 0.00 0.00 35.94 3.28
51 52 6.461509 GGGAACACTAATATGAGGGCATTTTG 60.462 42.308 0.00 0.00 35.94 2.44
52 53 5.598417 GGGAACACTAATATGAGGGCATTTT 59.402 40.000 0.00 0.00 35.94 1.82
53 54 5.140454 GGGAACACTAATATGAGGGCATTT 58.860 41.667 0.00 0.00 35.94 2.32
54 55 4.167892 TGGGAACACTAATATGAGGGCATT 59.832 41.667 0.00 0.00 33.39 3.56
55 56 3.721575 TGGGAACACTAATATGAGGGCAT 59.278 43.478 0.00 0.00 35.11 4.40
56 57 3.119319 TGGGAACACTAATATGAGGGCA 58.881 45.455 0.00 0.00 33.40 5.36
57 58 3.857157 TGGGAACACTAATATGAGGGC 57.143 47.619 0.00 0.00 33.40 5.19
70 71 5.686753 ACACTATTGTAAACAGTGGGAACA 58.313 37.500 3.69 0.00 43.18 3.18
71 72 6.628919 AACACTATTGTAAACAGTGGGAAC 57.371 37.500 3.69 0.00 43.18 3.62
72 73 6.829298 TGAAACACTATTGTAAACAGTGGGAA 59.171 34.615 3.69 0.00 43.18 3.97
73 74 6.261381 GTGAAACACTATTGTAAACAGTGGGA 59.739 38.462 3.69 0.00 43.18 4.37
74 75 6.262273 AGTGAAACACTATTGTAAACAGTGGG 59.738 38.462 2.43 0.00 43.46 4.61
75 76 7.259290 AGTGAAACACTATTGTAAACAGTGG 57.741 36.000 2.43 0.00 43.46 4.00
76 77 9.042008 AGTAGTGAAACACTATTGTAAACAGTG 57.958 33.333 13.43 0.00 46.56 3.66
77 78 9.257651 GAGTAGTGAAACACTATTGTAAACAGT 57.742 33.333 13.43 0.00 46.56 3.55
78 79 9.256477 TGAGTAGTGAAACACTATTGTAAACAG 57.744 33.333 13.43 0.00 46.56 3.16
79 80 9.772973 ATGAGTAGTGAAACACTATTGTAAACA 57.227 29.630 13.43 5.47 46.56 2.83
166 167 8.540388 ACTGTATGGATAGTCAAACACTATTGT 58.460 33.333 0.00 0.00 46.76 2.71
167 168 8.820933 CACTGTATGGATAGTCAAACACTATTG 58.179 37.037 0.00 0.00 46.76 1.90
168 169 8.540388 ACACTGTATGGATAGTCAAACACTATT 58.460 33.333 0.00 0.00 46.76 1.73
170 171 7.476540 ACACTGTATGGATAGTCAAACACTA 57.523 36.000 0.00 0.00 42.09 2.74
171 172 6.360370 ACACTGTATGGATAGTCAAACACT 57.640 37.500 0.00 0.00 39.41 3.55
172 173 7.172532 TGAAACACTGTATGGATAGTCAAACAC 59.827 37.037 0.00 0.00 0.00 3.32
173 174 7.172532 GTGAAACACTGTATGGATAGTCAAACA 59.827 37.037 0.00 0.00 36.32 2.83
174 175 7.387948 AGTGAAACACTGTATGGATAGTCAAAC 59.612 37.037 3.54 0.00 43.63 2.93
175 176 7.450074 AGTGAAACACTGTATGGATAGTCAAA 58.550 34.615 3.54 0.00 43.63 2.69
176 177 7.004555 AGTGAAACACTGTATGGATAGTCAA 57.995 36.000 3.54 0.00 43.63 3.18
177 178 6.605471 AGTGAAACACTGTATGGATAGTCA 57.395 37.500 3.54 0.00 43.63 3.41
178 179 9.250624 GAATAGTGAAACACTGTATGGATAGTC 57.749 37.037 13.62 0.00 45.01 2.59
179 180 8.758829 TGAATAGTGAAACACTGTATGGATAGT 58.241 33.333 13.62 0.00 45.01 2.12
180 181 9.770097 ATGAATAGTGAAACACTGTATGGATAG 57.230 33.333 13.62 0.00 45.01 2.08
183 184 9.378551 GTTATGAATAGTGAAACACTGTATGGA 57.621 33.333 13.62 0.00 45.01 3.41
184 185 9.161629 TGTTATGAATAGTGAAACACTGTATGG 57.838 33.333 13.62 0.00 45.01 2.74
188 189 9.066892 ACATTGTTATGAATAGTGAAACACTGT 57.933 29.630 13.62 5.14 39.00 3.55
189 190 9.897744 AACATTGTTATGAATAGTGAAACACTG 57.102 29.630 13.62 0.00 39.00 3.66
233 234 4.827692 ACGCTGTTATGAATAGTGGAACA 58.172 39.130 2.31 0.00 41.43 3.18
234 235 5.796350 AACGCTGTTATGAATAGTGGAAC 57.204 39.130 2.31 0.00 34.84 3.62
235 236 5.353123 GGAAACGCTGTTATGAATAGTGGAA 59.647 40.000 2.31 0.00 34.84 3.53
236 237 4.873827 GGAAACGCTGTTATGAATAGTGGA 59.126 41.667 2.31 0.00 34.84 4.02
237 238 4.634004 TGGAAACGCTGTTATGAATAGTGG 59.366 41.667 2.31 0.00 34.84 4.00
238 239 5.560148 GTGGAAACGCTGTTATGAATAGTG 58.440 41.667 0.00 0.00 38.02 2.74
239 240 5.796350 GTGGAAACGCTGTTATGAATAGT 57.204 39.130 0.00 0.00 38.02 2.12
294 295 7.227910 GGAAACACTATTAAGAACAGTGGAACA 59.772 37.037 2.96 0.00 43.18 3.18
295 296 7.227910 TGGAAACACTATTAAGAACAGTGGAAC 59.772 37.037 2.96 0.00 43.18 3.62
296 297 7.284074 TGGAAACACTATTAAGAACAGTGGAA 58.716 34.615 2.96 0.00 43.18 3.53
297 298 6.833041 TGGAAACACTATTAAGAACAGTGGA 58.167 36.000 2.96 0.00 43.18 4.02
314 315 7.959658 AAATATCTCATGAATGGTGGAAACA 57.040 32.000 0.00 0.00 38.70 2.83
315 316 8.689972 AGAAAATATCTCATGAATGGTGGAAAC 58.310 33.333 0.00 0.00 30.46 2.78
316 317 8.827832 AGAAAATATCTCATGAATGGTGGAAA 57.172 30.769 0.00 0.00 30.46 3.13
331 332 7.665559 TGCAAACACTGTTAGGAGAAAATATCT 59.334 33.333 0.00 0.00 42.61 1.98
332 333 7.750903 GTGCAAACACTGTTAGGAGAAAATATC 59.249 37.037 0.00 0.00 43.85 1.63
333 334 7.593825 GTGCAAACACTGTTAGGAGAAAATAT 58.406 34.615 0.00 0.00 43.85 1.28
334 335 6.966021 GTGCAAACACTGTTAGGAGAAAATA 58.034 36.000 0.00 0.00 43.85 1.40
335 336 5.831997 GTGCAAACACTGTTAGGAGAAAAT 58.168 37.500 0.00 0.00 43.85 1.82
336 337 5.243426 GTGCAAACACTGTTAGGAGAAAA 57.757 39.130 0.00 0.00 43.85 2.29
337 338 4.893424 GTGCAAACACTGTTAGGAGAAA 57.107 40.909 0.00 0.00 43.85 2.52
354 355 5.675684 TGAATAGTGGAGTGAATAGTGCA 57.324 39.130 0.00 0.00 0.00 4.57
355 356 6.201806 GTCATGAATAGTGGAGTGAATAGTGC 59.798 42.308 0.00 0.00 0.00 4.40
398 400 4.196626 TCTGATTAAACGGACGGTGAAT 57.803 40.909 0.00 0.00 0.00 2.57
490 505 6.751888 CGGAAATGTTTCAGAGACAAAACTTT 59.248 34.615 7.69 0.00 38.92 2.66
522 539 3.056465 TGTTGCCGGAAAAGTTTCAAAGT 60.056 39.130 5.05 0.00 38.92 2.66
525 563 3.594603 TTGTTGCCGGAAAAGTTTCAA 57.405 38.095 5.05 0.00 38.92 2.69
556 594 7.527796 TCTATCTGCTAAGTAATAGACAGGGT 58.472 38.462 0.00 0.00 36.87 4.34
609 647 3.502920 GTCATGTCTGTACTTCACCGAG 58.497 50.000 0.00 0.00 0.00 4.63
621 659 3.441572 GGAATGAGTTTGGGTCATGTCTG 59.558 47.826 0.00 0.00 34.78 3.51
632 672 6.367686 TGATCATTGATCGGAATGAGTTTG 57.632 37.500 19.15 0.00 43.79 2.93
715 755 8.508875 CAAACAACACTCGGTAATTATAGGTTT 58.491 33.333 0.00 0.00 0.00 3.27
740 780 7.446001 TTGTAACATATCATGAAGCAACACA 57.554 32.000 0.00 0.00 0.00 3.72
741 781 8.915871 ATTTGTAACATATCATGAAGCAACAC 57.084 30.769 0.00 0.00 0.00 3.32
773 817 5.820423 CACGGGAATACCATTAAATCTCACA 59.180 40.000 0.00 0.00 40.22 3.58
788 832 4.062293 CAAGTTGTTGAGTCACGGGAATA 58.938 43.478 0.00 0.00 35.46 1.75
791 835 1.208535 ACAAGTTGTTGAGTCACGGGA 59.791 47.619 1.64 0.00 37.10 5.14
799 843 5.679734 AGCATAGTGAACAAGTTGTTGAG 57.320 39.130 25.46 6.87 41.28 3.02
838 883 5.592054 GGGAACAAGAAAAGAGGACAAAAG 58.408 41.667 0.00 0.00 0.00 2.27
845 890 0.517316 CGCGGGAACAAGAAAAGAGG 59.483 55.000 0.00 0.00 0.00 3.69
855 900 0.742990 GATGATGGAACGCGGGAACA 60.743 55.000 12.47 4.05 0.00 3.18
925 970 2.047061 ACTGCTCACCCTGTTAAGACA 58.953 47.619 0.00 0.00 0.00 3.41
942 987 2.923121 AGCACCAATATACCTGCACTG 58.077 47.619 0.00 0.00 31.71 3.66
986 1031 1.467875 CCTCATAACGAGCGTCTTCG 58.532 55.000 0.00 4.91 45.70 3.79
1024 1069 1.283321 GCCCTCCTCAATCTCCAGTTT 59.717 52.381 0.00 0.00 0.00 2.66
1064 1109 4.518590 CCGAGAGTGACATGATGTAGATCT 59.481 45.833 0.00 0.00 0.00 2.75
1075 1120 1.102154 CTCAGCTCCGAGAGTGACAT 58.898 55.000 0.00 0.00 34.79 3.06
1116 1161 0.603569 TCTTGAGAGACCCAAGCGAC 59.396 55.000 0.00 0.00 40.45 5.19
1119 1164 1.003003 AGCTTCTTGAGAGACCCAAGC 59.997 52.381 0.00 0.00 40.45 4.01
1128 1173 2.093606 CAGCATCCAGAGCTTCTTGAGA 60.094 50.000 0.00 0.00 41.14 3.27
1150 1195 2.224523 CCTTGAAGTCCTTGTGCAGGTA 60.225 50.000 0.00 0.00 44.37 3.08
1181 1226 2.221169 TGTTGTGCATCTGGTTCAGAC 58.779 47.619 0.00 0.00 43.63 3.51
1247 1354 7.148000 GGTTTATTACCGAAGTAGGTAGAGTGT 60.148 40.741 0.00 0.00 46.31 3.55
1295 1402 8.833231 ATAATTAGAAGCGTGCACACTTATAT 57.167 30.769 19.55 9.74 0.00 0.86
1321 1428 5.971792 CACAGTACCATATGACTCGTTACAG 59.028 44.000 3.65 0.00 0.00 2.74
1327 1434 6.561737 ACTATCACAGTACCATATGACTCG 57.438 41.667 3.65 0.00 34.98 4.18
1333 1440 8.307483 GCTGTTGATACTATCACAGTACCATAT 58.693 37.037 19.25 0.00 42.56 1.78
1345 1452 7.488322 AGAAACTGAGAGCTGTTGATACTATC 58.512 38.462 0.00 0.00 36.47 2.08
1392 1499 8.598916 TCAGGAGTTATTACAGAACCAACAATA 58.401 33.333 0.00 0.00 0.00 1.90
1396 1503 7.570691 CGTTTCAGGAGTTATTACAGAACCAAC 60.571 40.741 0.00 0.00 0.00 3.77
1397 1504 6.425721 CGTTTCAGGAGTTATTACAGAACCAA 59.574 38.462 0.00 0.00 0.00 3.67
1399 1506 5.350640 CCGTTTCAGGAGTTATTACAGAACC 59.649 44.000 0.00 0.00 0.00 3.62
1412 1527 0.811281 GAATTGCCCCGTTTCAGGAG 59.189 55.000 0.00 0.00 0.00 3.69
1426 1541 8.592105 TTTTTGTTTCTGATAGCAAGGAATTG 57.408 30.769 0.00 0.00 0.00 2.32
1427 1542 9.211485 CATTTTTGTTTCTGATAGCAAGGAATT 57.789 29.630 0.00 0.00 0.00 2.17
1437 1552 9.734620 CAAACTCACTCATTTTTGTTTCTGATA 57.265 29.630 0.00 0.00 0.00 2.15
1487 1608 9.990868 ATACCAAGGAAAACTAACCAGAATAAT 57.009 29.630 0.00 0.00 0.00 1.28
1488 1609 9.457436 GATACCAAGGAAAACTAACCAGAATAA 57.543 33.333 0.00 0.00 0.00 1.40
1489 1610 8.607713 TGATACCAAGGAAAACTAACCAGAATA 58.392 33.333 0.00 0.00 0.00 1.75
1490 1611 7.466804 TGATACCAAGGAAAACTAACCAGAAT 58.533 34.615 0.00 0.00 0.00 2.40
1491 1612 6.843752 TGATACCAAGGAAAACTAACCAGAA 58.156 36.000 0.00 0.00 0.00 3.02
1492 1613 6.442541 TGATACCAAGGAAAACTAACCAGA 57.557 37.500 0.00 0.00 0.00 3.86
1499 1620 8.652290 GGTCTATCTATGATACCAAGGAAAACT 58.348 37.037 0.00 0.00 0.00 2.66
1505 1626 7.411486 AATCGGTCTATCTATGATACCAAGG 57.589 40.000 0.00 0.00 0.00 3.61
1510 1631 6.315642 TGGTCGAATCGGTCTATCTATGATAC 59.684 42.308 1.76 0.00 0.00 2.24
1531 1652 5.107453 GCACGAGTACATATATGCTTTGGTC 60.107 44.000 12.79 1.24 0.00 4.02
1533 1654 4.749598 TGCACGAGTACATATATGCTTTGG 59.250 41.667 12.79 2.81 34.18 3.28
1535 1656 6.459066 AGATGCACGAGTACATATATGCTTT 58.541 36.000 12.79 0.00 34.18 3.51
1539 1660 7.082700 AGAGAGATGCACGAGTACATATATG 57.917 40.000 11.29 11.29 0.00 1.78
1542 1663 6.398234 AAAGAGAGATGCACGAGTACATAT 57.602 37.500 0.00 0.00 0.00 1.78
1596 1724 7.284489 GGTGGCTAATGATATGTTTCCTTGTAA 59.716 37.037 0.00 0.00 0.00 2.41
1603 1731 5.067674 TGCTTGGTGGCTAATGATATGTTTC 59.932 40.000 0.00 0.00 0.00 2.78
1612 1740 3.264104 CCAAAATGCTTGGTGGCTAATG 58.736 45.455 0.00 0.00 34.92 1.90
1622 1750 2.098934 TGTATAGCGGCCAAAATGCTTG 59.901 45.455 7.42 0.00 40.06 4.01
1654 1782 7.991084 ACCAAAGTATTAGTAAGTTGGTTCC 57.009 36.000 13.39 0.00 44.85 3.62
1672 1800 5.049680 ACGTGAGCATACTTGTTAACCAAAG 60.050 40.000 2.48 3.71 31.20 2.77
1673 1801 4.817464 ACGTGAGCATACTTGTTAACCAAA 59.183 37.500 2.48 0.00 31.20 3.28
1681 1809 4.720649 ACTGATACGTGAGCATACTTGT 57.279 40.909 0.00 0.00 0.00 3.16
1723 1856 6.499350 TCATAGGTAGTTCAAACCTTGGTAGT 59.501 38.462 0.00 0.00 45.26 2.73
1732 1865 6.708949 TCAGTTTGGTCATAGGTAGTTCAAAC 59.291 38.462 0.00 0.00 41.27 2.93
1733 1866 6.833041 TCAGTTTGGTCATAGGTAGTTCAAA 58.167 36.000 0.00 0.00 0.00 2.69
1734 1867 6.428083 TCAGTTTGGTCATAGGTAGTTCAA 57.572 37.500 0.00 0.00 0.00 2.69
1743 1876 7.432252 GTGTTCAGTTTTTCAGTTTGGTCATAG 59.568 37.037 0.00 0.00 0.00 2.23
1744 1877 7.094162 TGTGTTCAGTTTTTCAGTTTGGTCATA 60.094 33.333 0.00 0.00 0.00 2.15
1762 1895 4.466828 GAATTGAATCCGTGTGTGTTCAG 58.533 43.478 0.00 0.00 32.76 3.02
1765 1898 2.556622 GGGAATTGAATCCGTGTGTGTT 59.443 45.455 0.00 0.00 40.62 3.32
1779 1912 0.687427 AATTGGGCGAGGGGGAATTG 60.687 55.000 0.00 0.00 0.00 2.32
1780 1913 0.042581 AAATTGGGCGAGGGGGAATT 59.957 50.000 0.00 0.00 0.00 2.17
1788 1921 1.298157 TGTGCGAGAAATTGGGCGAG 61.298 55.000 0.00 0.00 0.00 5.03
1793 1926 3.389741 GCTGTGTGCGAGAAATTGG 57.610 52.632 0.00 0.00 0.00 3.16
1803 1936 0.321671 TCCTTCCTACAGCTGTGTGC 59.678 55.000 29.57 0.00 37.52 4.57
1817 1952 0.693049 TGCCACTCCCTTTCTCCTTC 59.307 55.000 0.00 0.00 0.00 3.46
1823 1958 1.536073 GCCCTTTGCCACTCCCTTTC 61.536 60.000 0.00 0.00 0.00 2.62
1827 1962 4.660938 ACGCCCTTTGCCACTCCC 62.661 66.667 0.00 0.00 36.24 4.30
1828 1963 2.597510 AACGCCCTTTGCCACTCC 60.598 61.111 0.00 0.00 36.24 3.85
1847 1989 1.301716 AACCACTACTGCACCGCTG 60.302 57.895 0.00 0.00 0.00 5.18
1848 1990 1.301716 CAACCACTACTGCACCGCT 60.302 57.895 0.00 0.00 0.00 5.52
1858 2000 0.109458 CTACGACGCAGCAACCACTA 60.109 55.000 0.00 0.00 0.00 2.74
1866 2008 2.730672 CCAGTTGCTACGACGCAGC 61.731 63.158 13.24 13.24 41.55 5.25
1875 2017 1.374631 CTGCTGTCGCCAGTTGCTA 60.375 57.895 0.00 0.00 41.02 3.49
1883 2025 1.014564 GTACCAAGTCTGCTGTCGCC 61.015 60.000 0.00 0.00 34.43 5.54
1884 2026 0.038159 AGTACCAAGTCTGCTGTCGC 60.038 55.000 0.00 0.00 0.00 5.19
1888 2030 3.583806 CTCTGAAGTACCAAGTCTGCTG 58.416 50.000 0.00 0.00 0.00 4.41
1889 2031 2.564947 CCTCTGAAGTACCAAGTCTGCT 59.435 50.000 0.00 0.00 0.00 4.24
1896 2038 2.303022 CCTGAAGCCTCTGAAGTACCAA 59.697 50.000 0.00 0.00 0.00 3.67
1902 2044 1.753649 TCGATCCTGAAGCCTCTGAAG 59.246 52.381 0.00 0.00 0.00 3.02
1905 2047 1.202510 CCTTCGATCCTGAAGCCTCTG 60.203 57.143 5.16 0.00 43.21 3.35
1907 2049 1.115467 TCCTTCGATCCTGAAGCCTC 58.885 55.000 5.16 0.00 43.21 4.70
1919 2061 2.872038 GCAGCTTTTCCTCTTCCTTCGA 60.872 50.000 0.00 0.00 0.00 3.71
1920 2062 1.466558 GCAGCTTTTCCTCTTCCTTCG 59.533 52.381 0.00 0.00 0.00 3.79
1933 2075 3.964875 CGGCGTGGTTGCAGCTTT 61.965 61.111 0.00 0.00 36.28 3.51
1965 2107 7.047891 TCACCTAGAACTAATCGATTGCAAAT 58.952 34.615 20.87 6.57 0.00 2.32
1972 2114 6.123651 AGTCACTCACCTAGAACTAATCGAT 58.876 40.000 0.00 0.00 0.00 3.59
1973 2115 5.498393 AGTCACTCACCTAGAACTAATCGA 58.502 41.667 0.00 0.00 0.00 3.59
1984 2126 5.873712 CGAAAGTAGTAGAGTCACTCACCTA 59.126 44.000 7.77 3.51 32.06 3.08
2004 2146 4.196193 AGTTCCATCTGAAACACACGAAA 58.804 39.130 0.00 0.00 33.94 3.46
2014 2156 7.346698 AGGAGATATTCAAGAGTTCCATCTGAA 59.653 37.037 0.00 0.00 0.00 3.02
2015 2157 6.843333 AGGAGATATTCAAGAGTTCCATCTGA 59.157 38.462 0.00 0.00 0.00 3.27
2016 2158 6.930164 CAGGAGATATTCAAGAGTTCCATCTG 59.070 42.308 0.00 0.00 0.00 2.90
2028 2170 4.437682 AAATCGGGCAGGAGATATTCAA 57.562 40.909 0.00 0.00 0.00 2.69
2050 2192 6.325286 AGCCAAATTTAGTAGAAAACCAACCA 59.675 34.615 0.00 0.00 0.00 3.67
2051 2193 6.755206 AGCCAAATTTAGTAGAAAACCAACC 58.245 36.000 0.00 0.00 0.00 3.77
2065 2207 1.275856 CCTGCCTGCAAGCCAAATTTA 59.724 47.619 4.51 0.00 0.00 1.40
2074 2216 1.529010 TGACAACCCTGCCTGCAAG 60.529 57.895 0.00 0.00 0.00 4.01
2083 2225 2.100989 GATCCTAGACGTGACAACCCT 58.899 52.381 0.00 0.00 0.00 4.34
2091 2233 4.973051 CGAATTTCTGAGATCCTAGACGTG 59.027 45.833 0.00 0.00 0.00 4.49
2096 2238 7.437748 ACATAACCGAATTTCTGAGATCCTAG 58.562 38.462 0.00 0.00 0.00 3.02
2101 2243 8.023128 CACAAAACATAACCGAATTTCTGAGAT 58.977 33.333 0.00 0.00 0.00 2.75
2106 2248 8.626526 AGTAACACAAAACATAACCGAATTTCT 58.373 29.630 0.00 0.00 0.00 2.52
2131 2273 5.705441 TCAGAACCAAGCATACTGGTTAAAG 59.295 40.000 7.20 1.75 44.94 1.85
2134 2276 4.286032 ACTCAGAACCAAGCATACTGGTTA 59.714 41.667 7.20 0.00 44.94 2.85
2143 2285 2.224523 CCCAAGTACTCAGAACCAAGCA 60.225 50.000 0.00 0.00 0.00 3.91
2147 2289 4.513406 AAAACCCAAGTACTCAGAACCA 57.487 40.909 0.00 0.00 0.00 3.67
2167 2309 6.934083 TCACACAGAACAAGCTACATTCATAA 59.066 34.615 7.14 0.00 0.00 1.90
2195 2340 1.538512 TCTAGAACTCACGGTCCAACG 59.461 52.381 0.00 0.00 40.31 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.