AutoCloner

Multiple sequence alignment - TraesCS1B01G031900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G031900	chr1B	100.000	2198	0	0	1	2198	15531918	15529721	0.000000e+00	4060.0
1	TraesCS1B01G031900	chr1B	89.934	1510	109	17	694	2198	15582193	15580722	0.000000e+00	1906.0
2	TraesCS1B01G031900	chr1B	95.833	552	15	6	1	546	15583368	15582819	0.000000e+00	885.0
3	TraesCS1B01G031900	chr1B	93.443	549	28	6	4	546	15380485	15381031	0.000000e+00	808.0
4	TraesCS1B01G031900	chr1B	82.045	440	47	22	774	1198	15421591	15422013	1.620000e-91	346.0
5	TraesCS1B01G031900	chr1B	89.937	159	12	2	539	693	15582420	15582262	3.700000e-48	202.0
6	TraesCS1B01G031900	chr1B	79.605	304	37	10	835	1136	15299394	15299674	6.190000e-46	195.0
7	TraesCS1B01G031900	chr1B	90.210	143	9	4	1	139	205878302	205878443	4.820000e-42	182.0
8	TraesCS1B01G031900	chr1B	93.396	106	3	4	444	546	15386918	15387022	1.050000e-33	154.0
9	TraesCS1B01G031900	chr1A	88.657	670	47	17	740	1404	12129370	12130015	0.000000e+00	789.0
10	TraesCS1B01G031900	chr1A	82.243	428	55	15	787	1198	12109133	12109555	1.250000e-92	350.0
11	TraesCS1B01G031900	chr1A	82.243	428	55	15	787	1198	12171100	12170678	1.250000e-92	350.0
12	TraesCS1B01G031900	chr1A	90.210	143	10	2	2012	2150	97729913	97730055	1.340000e-42	183.0
13	TraesCS1B01G031900	chr1A	89.157	83	7	2	256	336	12137997	12137915	3.860000e-18	102.0
14	TraesCS1B01G031900	chr1A	94.643	56	1	2	281	336	254188046	254187993	3.890000e-13	86.1
15	TraesCS1B01G031900	chr7D	80.192	520	79	18	1493	2009	587166970	587166472	3.450000e-98	368.0
16	TraesCS1B01G031900	chr7D	76.293	464	88	18	1493	1949	572670324	572669876	6.100000e-56	228.0
17	TraesCS1B01G031900	chr7D	75.810	463	89	18	1493	1949	596077435	596076990	1.710000e-51	213.0
18	TraesCS1B01G031900	chr7D	81.013	79	11	4	1497	1573	105280611	105280687	2.360000e-05	60.2
19	TraesCS1B01G031900	chr5D	78.887	521	96	12	1494	2009	116001258	116000747	7.520000e-90	340.0
20	TraesCS1B01G031900	chr5D	76.660	467	86	18	1552	2008	345445160	345444707	1.010000e-58	237.0
21	TraesCS1B01G031900	chr5D	80.921	304	51	6	1713	2013	482152579	482152878	1.310000e-57	233.0
22	TraesCS1B01G031900	chr5D	91.729	133	11	0	2016	2148	315907890	315907758	3.730000e-43	185.0
23	TraesCS1B01G031900	chr5D	90.441	136	12	1	2016	2150	282218062	282218197	6.240000e-41	178.0
24	TraesCS1B01G031900	chr1D	81.655	447	47	17	774	1198	10390376	10390809	2.700000e-89	339.0
25	TraesCS1B01G031900	chr7B	91.237	194	17	0	1006	1199	4137807	4137614	4.650000e-67	265.0
26	TraesCS1B01G031900	chr7B	90.722	194	18	0	1006	1199	4202310	4202117	2.160000e-65	259.0
27	TraesCS1B01G031900	chr7B	83.077	65	7	3	1521	1582	637578854	637578917	3.050000e-04	56.5
28	TraesCS1B01G031900	chr7A	90.722	194	18	0	1006	1199	66615008	66614815	2.160000e-65	259.0
29	TraesCS1B01G031900	chr7A	90.000	140	13	1	2012	2150	255573277	255573416	1.730000e-41	180.0
30	TraesCS1B01G031900	chr7A	88.652	141	14	2	2012	2150	65986897	65987037	1.040000e-38	171.0
31	TraesCS1B01G031900	chr3B	91.860	172	9	4	1	168	281418130	281417960	3.650000e-58	235.0
32	TraesCS1B01G031900	chr3B	91.860	172	9	4	1	168	281516977	281516807	3.650000e-58	235.0
33	TraesCS1B01G031900	chr3B	91.279	172	10	4	1	168	281519861	281519691	1.700000e-56	230.0
34	TraesCS1B01G031900	chr3B	90.698	172	11	3	1	168	281415247	281415077	7.900000e-55	224.0
35	TraesCS1B01G031900	chr2B	91.860	172	9	4	1	168	724650621	724650791	3.650000e-58	235.0
36	TraesCS1B01G031900	chr2B	91.279	172	10	4	1	168	724653520	724653690	1.700000e-56	230.0
37	TraesCS1B01G031900	chr2B	88.652	141	15	1	2012	2151	618750801	618750661	1.040000e-38	171.0
38	TraesCS1B01G031900	chr4A	79.866	298	54	5	1707	2001	170728809	170729103	1.710000e-51	213.0
39	TraesCS1B01G031900	chr4A	70.344	553	131	28	1466	2003	45689228	45689762	5.030000e-12	82.4
40	TraesCS1B01G031900	chr6D	75.699	465	89	19	1493	1949	6182041	6181593	6.150000e-51	211.0
41	TraesCS1B01G031900	chr6D	75.459	436	82	23	1553	1977	6181347	6180926	2.880000e-44	189.0
42	TraesCS1B01G031900	chr4D	90.000	140	13	1	2012	2150	336880427	336880566	1.730000e-41	180.0
43	TraesCS1B01G031900	chr4D	89.286	140	14	1	2012	2150	336825432	336825293	8.070000e-40	174.0
44	TraesCS1B01G031900	chr4D	89.706	136	13	1	2016	2150	372201728	372201593	2.900000e-39	172.0
45	TraesCS1B01G031900	chr4D	100.000	28	0	0	511	538	497218477	497218504	4.000000e-03	52.8
46	TraesCS1B01G031900	chr5A	84.971	173	25	1	1566	1738	334347451	334347622	8.070000e-40	174.0
47	TraesCS1B01G031900	chr2A	75.815	368	71	13	1646	2004	772446044	772445686	1.040000e-38	171.0
48	TraesCS1B01G031900	chr6B	80.220	91	17	1	1919	2009	492523453	492523364	1.410000e-07	67.6
49	TraesCS1B01G031900	chr6B	81.176	85	12	4	1493	1575	574473626	574473708	5.070000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G031900	chr1B	15529721	15531918	2197	True	4060.000000	4060	100.000000	1	2198	1	chr1B.!!$R1	2197
1	TraesCS1B01G031900	chr1B	15580722	15583368	2646	True	997.666667	1906	91.901333	1	2198	3	chr1B.!!$R2	2197
2	TraesCS1B01G031900	chr1B	15380485	15381031	546	False	808.000000	808	93.443000	4	546	1	chr1B.!!$F2	542
3	TraesCS1B01G031900	chr1A	12129370	12130015	645	False	789.000000	789	88.657000	740	1404	1	chr1A.!!$F2	664
4	TraesCS1B01G031900	chr5D	116000747	116001258	511	True	340.000000	340	78.887000	1494	2009	1	chr5D.!!$R1	515
5	TraesCS1B01G031900	chr3B	281516807	281519861	3054	True	232.500000	235	91.569500	1	168	2	chr3B.!!$R2	167
6	TraesCS1B01G031900	chr3B	281415077	281418130	3053	True	229.500000	235	91.279000	1	168	2	chr3B.!!$R1	167
7	TraesCS1B01G031900	chr2B	724650621	724653690	3069	False	232.500000	235	91.569500	1	168	2	chr2B.!!$F1	167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
854	1417	0.673437	CCAAAACGGCACTGACCAAT	59.327	50.0	0.0	0.0	0.0	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2177	4696	0.39034	CTGCTACCACACGACATGCT	60.39	55.0	0.0	0.0	0.0	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
237	314	2.932498	TCTCATGTGCGTGCAAATTTC	58.068	42.857	0.00	0.00	0.00	2.17
635	1127	2.309528	TTCGGGTGACATCAGCATAC	57.690	50.000	12.76	0.00	45.46	2.39
651	1143	3.266254	AGCATACTAGCCCGATCCTACTA	59.734	47.826	0.00	0.00	34.23	1.82
653	1145	4.625805	GCATACTAGCCCGATCCTACTAGA	60.626	50.000	14.32	3.08	36.45	2.43
658	1150	1.546476	GCCCGATCCTACTAGACCATG	59.454	57.143	0.00	0.00	0.00	3.66
659	1151	1.546476	CCCGATCCTACTAGACCATGC	59.454	57.143	0.00	0.00	0.00	4.06
667	1159	0.744414	ACTAGACCATGCGCGCATTT	60.744	50.000	41.73	31.19	33.90	2.32
669	1161	1.761244	TAGACCATGCGCGCATTTCG	61.761	55.000	41.73	31.39	42.12	3.46
703	1263	4.260334	GCTGTTGGTTGAATTTGCTTGTTC	60.260	41.667	0.00	0.00	0.00	3.18
705	1265	5.240891	TGTTGGTTGAATTTGCTTGTTCAA	58.759	33.333	6.80	6.80	40.81	2.69
718	1278	3.183775	GCTTGTTCAATTTGCTGCTTCAG	59.816	43.478	0.00	0.00	34.12	3.02
725	1285	2.205022	TTTGCTGCTTCAGGCTACAT	57.795	45.000	0.00	0.00	42.39	2.29
735	1295	4.987912	GCTTCAGGCTACATATCTCAACTC	59.012	45.833	0.00	0.00	38.06	3.01
747	1307	7.063593	ACATATCTCAACTCCTCAGTTAGCTA	58.936	38.462	0.00	0.00	41.24	3.32
753	1313	2.043227	CTCCTCAGTTAGCTAAGGGGG	58.957	57.143	15.11	15.11	30.71	5.40
854	1417	0.673437	CCAAAACGGCACTGACCAAT	59.327	50.000	0.00	0.00	0.00	3.16
888	1451	6.224420	ACTTGTTTAGAAATACACGACAGC	57.776	37.500	0.00	0.00	0.00	4.40
948	1511	8.995220	ACTTACTCAGATACTCAGATACGAATC	58.005	37.037	0.00	0.00	0.00	2.52
949	1512	9.214957	CTTACTCAGATACTCAGATACGAATCT	57.785	37.037	0.00	0.00	43.54	2.40
950	1513	9.562408	TTACTCAGATACTCAGATACGAATCTT	57.438	33.333	0.00	0.00	40.65	2.40
973	1542	4.542890	GCTAGCTAGCCATCGTCG	57.457	61.111	31.67	0.29	43.39	5.12
1297	3145	3.370978	GCACTATTGCGATTACTGTGTGT	59.629	43.478	0.00	0.00	39.50	3.72
1343	3191	5.925509	AGTGACGTTATATGTTTGGGCTAT	58.074	37.500	0.00	0.00	0.00	2.97
1431	3283	9.436957	AGTGTGACAAATTTAGGACAGTATAAG	57.563	33.333	0.00	0.00	0.00	1.73
1463	3315	0.107945	GAGCCCTCTCAGCGATTTGT	60.108	55.000	0.00	0.00	39.16	2.83
1482	3334	4.171878	TGTGTTGGGATGAAACAACCTA	57.828	40.909	0.00	0.00	44.72	3.08
1483	3335	4.141287	TGTGTTGGGATGAAACAACCTAG	58.859	43.478	0.00	0.00	44.72	3.02
1485	3337	3.089284	GTTGGGATGAAACAACCTAGGG	58.911	50.000	14.81	0.00	40.71	3.53
1486	3338	1.638589	TGGGATGAAACAACCTAGGGG	59.361	52.381	14.81	7.48	38.88	4.79
1489	3341	2.576648	GGATGAAACAACCTAGGGGTCT	59.423	50.000	14.81	0.00	46.67	3.85
1521	3373	3.638160	TCGAAGGTGTACTTGTAACTGGT	59.362	43.478	0.00	0.00	40.21	4.00
1538	3390	9.610705	TGTAACTGGTACAACTACACAAAATTA	57.389	29.630	2.43	0.00	39.85	1.40
1550	3402	9.624697	AACTACACAAAATTACGATACGAGTTA	57.375	29.630	0.00	0.00	0.00	2.24
1573	3425	0.321653	GTCGAGGGTGGACTTGCAAT	60.322	55.000	0.00	0.00	0.00	3.56
1575	3427	1.626321	TCGAGGGTGGACTTGCAATTA	59.374	47.619	0.00	0.00	0.00	1.40
1577	3429	2.420022	CGAGGGTGGACTTGCAATTAAG	59.580	50.000	0.00	0.00	0.00	1.85
1586	3438	5.178623	TGGACTTGCAATTAAGACAACTACG	59.821	40.000	0.00	0.00	0.00	3.51
1587	3439	5.390567	GGACTTGCAATTAAGACAACTACGG	60.391	44.000	0.00	0.00	0.00	4.02
1637	3489	2.373169	AGGATGGACTTGCAACTGAGAA	59.627	45.455	0.00	0.00	0.00	2.87
1698	3550	2.608752	GCTTGCAACTGGGATGAAACAG	60.609	50.000	0.00	0.00	40.48	3.16
1748	3655	2.286418	GGACTTGCAACTCGAACAACTG	60.286	50.000	0.00	0.00	0.00	3.16
1749	3656	1.064060	ACTTGCAACTCGAACAACTGC	59.936	47.619	0.00	0.00	0.00	4.40
1776	3683	3.744214	GCCCAGTTACGAATGGATGATGA	60.744	47.826	0.00	0.00	39.02	2.92
1853	3760	7.174253	TCGACTTGCAACTAGGATAAAACAAAT	59.826	33.333	0.00	0.00	0.00	2.32
1950	3857	1.616994	GGTGGGCTTGCAACTAGGATT	60.617	52.381	0.00	0.00	0.00	3.01
1979	3886	4.324267	ACTACAAAGCCTAGTTGCGATTT	58.676	39.130	0.00	0.00	36.02	2.17
1983	3890	3.334583	AAGCCTAGTTGCGATTTGAGA	57.665	42.857	0.00	0.00	36.02	3.27
2018	4082	9.261035	CCAACTGGGATAACTACTATATGATCT	57.739	37.037	0.00	0.00	40.01	2.75
2050	4114	2.682856	GTTGTTCTTCCACTGCAACTCA	59.317	45.455	0.00	0.00	37.17	3.41
2061	4125	3.249799	CACTGCAACTCAATGACGGTAAA	59.750	43.478	0.00	0.00	0.00	2.01
2062	4126	4.072131	ACTGCAACTCAATGACGGTAAAT	58.928	39.130	0.00	0.00	0.00	1.40
2066	4130	5.877564	TGCAACTCAATGACGGTAAATATCA	59.122	36.000	0.00	0.00	0.00	2.15
2079	4143	4.700213	GGTAAATATCATGATCCCAACCCG	59.300	45.833	12.53	0.00	0.00	5.28
2080	4144	4.453480	AAATATCATGATCCCAACCCGT	57.547	40.909	12.53	0.00	0.00	5.28
2082	4146	5.576563	AATATCATGATCCCAACCCGTAA	57.423	39.130	12.53	0.00	0.00	3.18
2086	4150	0.621082	TGATCCCAACCCGTAATGCA	59.379	50.000	0.00	0.00	0.00	3.96
2087	4151	1.214175	TGATCCCAACCCGTAATGCAT	59.786	47.619	0.00	0.00	0.00	3.96
2088	4152	1.880027	GATCCCAACCCGTAATGCATC	59.120	52.381	0.00	0.00	0.00	3.91
2089	4153	0.916086	TCCCAACCCGTAATGCATCT	59.084	50.000	0.00	0.00	0.00	2.90
2092	4156	2.364632	CCAACCCGTAATGCATCTTCA	58.635	47.619	0.00	0.00	0.00	3.02
2093	4157	2.951642	CCAACCCGTAATGCATCTTCAT	59.048	45.455	0.00	0.00	0.00	2.57
2094	4158	4.133820	CCAACCCGTAATGCATCTTCATA	58.866	43.478	0.00	0.00	0.00	2.15
2095	4159	4.761739	CCAACCCGTAATGCATCTTCATAT	59.238	41.667	0.00	0.00	0.00	1.78
2096	4160	5.241506	CCAACCCGTAATGCATCTTCATATT	59.758	40.000	0.00	0.00	0.00	1.28
2097	4161	5.947228	ACCCGTAATGCATCTTCATATTG	57.053	39.130	0.00	0.00	0.00	1.90
2098	4162	5.620206	ACCCGTAATGCATCTTCATATTGA	58.380	37.500	0.00	0.00	0.00	2.57
2122	4186	0.874607	GGTTGATCGTAGGCGCGAAT	60.875	55.000	12.10	0.00	44.38	3.34
2150	4669	4.810491	TGTTTTCTACTACGTTCCCAACAC	59.190	41.667	0.00	0.00	0.00	3.32
2166	4685	3.049674	ACGTTGATGCCGCCACTG	61.050	61.111	0.00	0.00	0.00	3.66
2177	4696	0.895530	CCGCCACTGAAGAGGAAGTA	59.104	55.000	0.00	0.00	0.00	2.24
2183	4702	3.055530	CCACTGAAGAGGAAGTAGCATGT	60.056	47.826	0.00	0.00	0.00	3.21
2187	4706	2.949451	AGAGGAAGTAGCATGTCGTG	57.051	50.000	0.00	0.00	0.00	4.35
2188	4707	2.171840	AGAGGAAGTAGCATGTCGTGT	58.828	47.619	0.00	0.00	0.00	4.49
2195	4714	0.892063	TAGCATGTCGTGTGGTAGCA	59.108	50.000	0.00	0.00	0.00	3.49

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.280524	CGGTCGGTTTGGCTGTCA	60.281	61.111	0.00	0.00	0.00	3.58
237	314	3.254060	CTCAGATGTCTAAACACCACGG	58.746	50.000	0.00	0.00	38.48	4.94
356	436	2.774439	AAATGTTTCACGTGTGCTCC	57.226	45.000	16.51	1.24	0.00	4.70
627	1119	1.203063	AGGATCGGGCTAGTATGCTGA	60.203	52.381	0.00	0.00	0.00	4.26
628	1120	1.261480	AGGATCGGGCTAGTATGCTG	58.739	55.000	0.00	0.00	0.00	4.41
635	1127	2.040012	TGGTCTAGTAGGATCGGGCTAG	59.960	54.545	0.00	8.77	34.00	3.42
651	1143	2.793946	GAAATGCGCGCATGGTCT	59.206	55.556	43.67	27.45	36.68	3.85
653	1145	2.470801	AAACGAAATGCGCGCATGGT	62.471	50.000	43.67	35.13	46.04	3.55
658	1150	1.943623	ATGCAAAACGAAATGCGCGC	61.944	50.000	27.26	27.26	45.47	6.86
659	1151	0.246450	CATGCAAAACGAAATGCGCG	60.246	50.000	0.00	0.00	45.47	6.86
667	1159	0.031857	CAACAGCCCATGCAAAACGA	59.968	50.000	0.00	0.00	41.13	3.85
669	1161	0.106521	ACCAACAGCCCATGCAAAAC	59.893	50.000	0.00	0.00	41.13	2.43
718	1278	4.586841	ACTGAGGAGTTGAGATATGTAGCC	59.413	45.833	0.00	0.00	0.00	3.93
725	1285	7.575414	CTTAGCTAACTGAGGAGTTGAGATA	57.425	40.000	0.86	0.00	42.66	1.98
735	1295	1.763545	GACCCCCTTAGCTAACTGAGG	59.236	57.143	0.86	1.87	46.84	3.86
747	1307	1.852157	TGTGCATCCAGACCCCCTT	60.852	57.895	0.00	0.00	0.00	3.95
753	1313	1.089920	GTCCATGTGTGCATCCAGAC	58.910	55.000	0.00	0.00	35.90	3.51
854	1417	1.529438	CTAAACAAGTTTGCGCCTCGA	59.471	47.619	4.18	0.00	34.23	4.04
888	1451	7.495055	ACTACGTGGTGTATTTATAGGGAAAG	58.505	38.462	2.80	0.00	31.20	2.62
993	1562	1.016130	ACGACTTGCTCATCTTGGCG	61.016	55.000	0.00	0.00	0.00	5.69
1281	3128	2.248280	ACCACACACAGTAATCGCAA	57.752	45.000	0.00	0.00	0.00	4.85
1431	3283	0.464554	AGGGCTCATTTTAGGCTCGC	60.465	55.000	0.00	0.00	41.59	5.03
1454	3306	2.198827	TCATCCCAACACAAATCGCT	57.801	45.000	0.00	0.00	0.00	4.93
1463	3315	3.499563	CCCTAGGTTGTTTCATCCCAACA	60.500	47.826	8.29	0.00	42.09	3.33
1482	3334	1.371558	GACTCGCAAACAGACCCCT	59.628	57.895	0.00	0.00	0.00	4.79
1483	3335	2.027625	CGACTCGCAAACAGACCCC	61.028	63.158	0.00	0.00	0.00	4.95
1485	3337	0.784778	CTTCGACTCGCAAACAGACC	59.215	55.000	0.00	0.00	0.00	3.85
1486	3338	0.784778	CCTTCGACTCGCAAACAGAC	59.215	55.000	0.00	0.00	0.00	3.51
1487	3339	0.387929	ACCTTCGACTCGCAAACAGA	59.612	50.000	0.00	0.00	0.00	3.41
1489	3341	0.179094	ACACCTTCGACTCGCAAACA	60.179	50.000	0.00	0.00	0.00	2.83
1521	3373	8.962857	TCGTATCGTAATTTTGTGTAGTTGTA	57.037	30.769	0.00	0.00	0.00	2.41
1538	3390	2.530177	TCGACTCGTAACTCGTATCGT	58.470	47.619	0.00	0.00	43.01	3.73
1550	3402	1.228490	AAGTCCACCCTCGACTCGT	60.228	57.895	0.00	0.00	39.69	4.18
1573	3425	6.734137	TCGTAGTTTTCCGTAGTTGTCTTAA	58.266	36.000	0.00	0.00	0.00	1.85
1575	3427	5.186996	TCGTAGTTTTCCGTAGTTGTCTT	57.813	39.130	0.00	0.00	0.00	3.01
1577	3429	5.225949	CGTATCGTAGTTTTCCGTAGTTGTC	59.774	44.000	0.00	0.00	0.00	3.18
1586	3438	5.156355	TCACAACTCGTATCGTAGTTTTCC	58.844	41.667	0.00	0.00	33.72	3.13
1587	3439	5.855395	ACTCACAACTCGTATCGTAGTTTTC	59.145	40.000	0.00	0.00	33.72	2.29
1637	3489	6.527057	ACTAGGCTCATAGTTTCGTAGTTT	57.473	37.500	0.00	0.00	31.89	2.66
1698	3550	2.766828	ACTCACAAGTAGGCCCATAGTC	59.233	50.000	0.00	0.00	32.59	2.59
1748	3655	0.739813	ATTCGTAACTGGGCTCGTGC	60.740	55.000	0.00	0.00	38.76	5.34
1749	3656	0.999406	CATTCGTAACTGGGCTCGTG	59.001	55.000	0.00	0.00	0.00	4.35
1776	3683	2.417243	GCAGTTGTCCTTGTTGCAAGTT	60.417	45.455	0.00	0.00	34.99	2.66
1853	3760	3.906660	CTCACAACTGAGCCCGTAA	57.093	52.632	0.00	0.00	37.72	3.18
1950	3857	6.512091	CGCAACTAGGCTTTGTAGTTTGTTTA	60.512	38.462	0.00	0.00	38.42	2.01
1979	3886	2.632996	CCCAGTTGGAAGTACACTCTCA	59.367	50.000	0.00	0.00	37.39	3.27
2050	4114	6.778821	TGGGATCATGATATTTACCGTCATT	58.221	36.000	8.54	0.00	30.57	2.57
2061	4125	5.500234	CATTACGGGTTGGGATCATGATAT	58.500	41.667	8.54	0.00	0.00	1.63
2062	4126	4.805947	GCATTACGGGTTGGGATCATGATA	60.806	45.833	8.54	0.00	0.00	2.15
2066	4130	1.214175	TGCATTACGGGTTGGGATCAT	59.786	47.619	0.00	0.00	0.00	2.45
2079	4143	8.790718	ACCAAGATCAATATGAAGATGCATTAC	58.209	33.333	0.00	0.00	0.00	1.89
2080	4144	8.929260	ACCAAGATCAATATGAAGATGCATTA	57.071	30.769	0.00	0.00	0.00	1.90
2082	4146	7.504574	TCAACCAAGATCAATATGAAGATGCAT	59.495	33.333	0.00	0.00	0.00	3.96
2086	4150	7.935755	ACGATCAACCAAGATCAATATGAAGAT	59.064	33.333	0.00	0.00	43.61	2.40
2087	4151	7.275183	ACGATCAACCAAGATCAATATGAAGA	58.725	34.615	0.00	0.00	43.61	2.87
2088	4152	7.488187	ACGATCAACCAAGATCAATATGAAG	57.512	36.000	0.00	0.00	43.61	3.02
2089	4153	7.657354	CCTACGATCAACCAAGATCAATATGAA	59.343	37.037	0.00	0.00	43.61	2.57
2092	4156	5.934625	GCCTACGATCAACCAAGATCAATAT	59.065	40.000	0.00	0.00	43.61	1.28
2093	4157	5.297547	GCCTACGATCAACCAAGATCAATA	58.702	41.667	0.00	0.00	43.61	1.90
2094	4158	4.130118	GCCTACGATCAACCAAGATCAAT	58.870	43.478	0.00	0.00	43.61	2.57
2095	4159	3.531538	GCCTACGATCAACCAAGATCAA	58.468	45.455	0.00	0.00	43.61	2.57
2096	4160	2.481276	CGCCTACGATCAACCAAGATCA	60.481	50.000	0.00	0.00	43.61	2.92
2097	4161	2.128035	CGCCTACGATCAACCAAGATC	58.872	52.381	0.00	0.00	43.93	2.75
2098	4162	1.806623	GCGCCTACGATCAACCAAGAT	60.807	52.381	0.00	0.00	43.93	2.40
2150	4669	2.244436	CTTCAGTGGCGGCATCAACG	62.244	60.000	17.19	2.18	0.00	4.10
2166	4685	3.182967	CACGACATGCTACTTCCTCTTC	58.817	50.000	0.00	0.00	0.00	2.87
2177	4696	0.390340	CTGCTACCACACGACATGCT	60.390	55.000	0.00	0.00	0.00	3.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.