Multiple sequence alignment - TraesCS1B01G031100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G031100 chr1B 100.000 6930 0 0 1 6930 15296649 15289720 0.000000e+00 12798.0
1 TraesCS1B01G031100 chr1B 88.599 1035 72 26 2228 3251 535709037 535708038 0.000000e+00 1216.0
2 TraesCS1B01G031100 chr1B 95.000 100 5 0 2029 2128 15294422 15294323 2.590000e-34 158.0
3 TraesCS1B01G031100 chr1B 95.000 100 5 0 2228 2327 15294621 15294522 2.590000e-34 158.0
4 TraesCS1B01G031100 chr1B 81.068 206 12 8 1994 2198 535709067 535708888 9.370000e-29 139.0
5 TraesCS1B01G031100 chr1B 93.243 74 2 2 5672 5745 15290934 15290864 9.510000e-19 106.0
6 TraesCS1B01G031100 chr1B 93.243 74 2 2 5716 5786 15290978 15290905 9.510000e-19 106.0
7 TraesCS1B01G031100 chr1A 90.922 3547 196 47 2234 5715 12102737 12099252 0.000000e+00 4650.0
8 TraesCS1B01G031100 chr1A 92.437 1071 50 11 866 1931 12103940 12102896 0.000000e+00 1500.0
9 TraesCS1B01G031100 chr1A 88.462 728 58 15 6207 6930 12098585 12097880 0.000000e+00 856.0
10 TraesCS1B01G031100 chr1A 83.975 805 73 27 28 794 12105044 12104258 0.000000e+00 721.0
11 TraesCS1B01G031100 chr1A 96.903 226 6 1 5756 5980 12099128 12098903 1.820000e-100 377.0
12 TraesCS1B01G031100 chr1A 78.173 394 55 18 2735 3128 157354233 157354595 9.050000e-54 222.0
13 TraesCS1B01G031100 chr1A 86.364 176 20 4 399 571 12137753 12137579 9.180000e-44 189.0
14 TraesCS1B01G031100 chr1A 86.339 183 11 6 6030 6212 12098791 12098623 3.300000e-43 187.0
15 TraesCS1B01G031100 chr1A 90.090 111 10 1 399 509 12137256 12137147 7.250000e-30 143.0
16 TraesCS1B01G031100 chr1D 90.810 2557 166 32 3210 5735 10385765 10383247 0.000000e+00 3356.0
17 TraesCS1B01G031100 chr1D 92.451 1285 74 12 860 2133 10387795 10386523 0.000000e+00 1814.0
18 TraesCS1B01G031100 chr1D 95.050 707 23 9 2508 3211 10386516 10385819 0.000000e+00 1101.0
19 TraesCS1B01G031100 chr1D 86.047 731 60 22 6207 6930 10382715 10382020 0.000000e+00 747.0
20 TraesCS1B01G031100 chr1D 83.630 281 20 16 5718 5980 10383315 10383043 2.500000e-59 241.0
21 TraesCS1B01G031100 chr2B 89.758 1035 80 21 2228 3251 774748785 774749804 0.000000e+00 1301.0
22 TraesCS1B01G031100 chr2B 90.929 904 55 13 2332 3227 613044603 613043719 0.000000e+00 1190.0
23 TraesCS1B01G031100 chr2B 95.370 324 15 0 1610 1933 774748417 774748740 3.710000e-142 516.0
24 TraesCS1B01G031100 chr2B 94.753 324 16 1 1610 1933 613053626 613053304 2.890000e-138 503.0
25 TraesCS1B01G031100 chr2B 88.636 88 4 5 1994 2080 613053289 613053207 1.230000e-17 102.0
26 TraesCS1B01G031100 chr5B 88.823 1011 79 19 2228 3227 84737223 84736236 0.000000e+00 1210.0
27 TraesCS1B01G031100 chr5B 95.679 324 13 1 1610 1933 84737590 84737268 2.860000e-143 520.0
28 TraesCS1B01G031100 chr5B 81.068 206 12 8 1994 2198 84737253 84737074 9.370000e-29 139.0
29 TraesCS1B01G031100 chr7B 88.625 1011 80 22 2228 3227 511945645 511946631 0.000000e+00 1197.0
30 TraesCS1B01G031100 chr7B 94.444 324 17 1 1610 1933 511945278 511945600 1.340000e-136 497.0
31 TraesCS1B01G031100 chr7B 80.097 206 14 8 1994 2198 511945615 511945794 2.030000e-25 128.0
32 TraesCS1B01G031100 chr3B 95.062 324 16 0 1610 1933 528695809 528695486 1.720000e-140 510.0
33 TraesCS1B01G031100 chr3B 89.773 88 3 5 1994 2080 528695471 528695389 2.640000e-19 108.0
34 TraesCS1B01G031100 chr6D 87.582 153 15 4 2735 2886 212944516 212944367 2.570000e-39 174.0
35 TraesCS1B01G031100 chr5D 97.222 36 0 1 355 390 324643199 324643233 7.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G031100 chr1B 15289720 15296649 6929 True 12798.000000 12798 100.000000 1 6930 1 chr1B.!!$R1 6929
1 TraesCS1B01G031100 chr1B 535708038 535709067 1029 True 677.500000 1216 84.833500 1994 3251 2 chr1B.!!$R3 1257
2 TraesCS1B01G031100 chr1A 12097880 12105044 7164 True 1381.833333 4650 89.839667 28 6930 6 chr1A.!!$R1 6902
3 TraesCS1B01G031100 chr1D 10382020 10387795 5775 True 1451.800000 3356 89.597600 860 6930 5 chr1D.!!$R1 6070
4 TraesCS1B01G031100 chr2B 613043719 613044603 884 True 1190.000000 1190 90.929000 2332 3227 1 chr2B.!!$R1 895
5 TraesCS1B01G031100 chr2B 774748417 774749804 1387 False 908.500000 1301 92.564000 1610 3251 2 chr2B.!!$F1 1641
6 TraesCS1B01G031100 chr5B 84736236 84737590 1354 True 623.000000 1210 88.523333 1610 3227 3 chr5B.!!$R1 1617
7 TraesCS1B01G031100 chr7B 511945278 511946631 1353 False 607.333333 1197 87.722000 1610 3227 3 chr7B.!!$F1 1617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 408 1.818674 GCCGAAAATTCACATCACCCT 59.181 47.619 0.00 0.00 0.00 4.34 F
2175 2543 1.014352 ACAGTTGCAGGTTCACGAAC 58.986 50.000 1.12 1.12 40.45 3.95 F
2306 2674 0.040058 ATTGGTGGCCATCTTGCAGA 59.960 50.000 18.94 0.00 31.53 4.26 F
2307 2675 0.178967 TTGGTGGCCATCTTGCAGAA 60.179 50.000 18.94 0.00 31.53 3.02 F
2308 2676 0.040058 TGGTGGCCATCTTGCAGAAT 59.960 50.000 18.94 0.00 0.00 2.40 F
2309 2677 0.458669 GGTGGCCATCTTGCAGAATG 59.541 55.000 9.72 3.95 40.87 2.67 F
2317 2685 0.482446 TCTTGCAGAATGGGTGGGTT 59.518 50.000 0.00 0.00 35.86 4.11 F
2327 2695 0.550914 TGGGTGGGTTAGATGGATGC 59.449 55.000 0.00 0.00 0.00 3.91 F
2981 3358 0.972883 GTGTCCTCTCTCCTGCACTT 59.027 55.000 0.00 0.00 0.00 3.16 F
4272 4734 1.396301 GTCATGCTGTTGCTAGTGCTC 59.604 52.381 0.00 0.00 40.48 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 2655 0.040058 TCTGCAAGATGGCCACCAAT 59.960 50.000 8.16 0.0 38.67 3.16 R
3506 3967 1.111277 GTGGTTGCACCTCAAACCTT 58.889 50.000 4.70 0.0 41.68 3.50 R
3868 4329 2.363359 CAAATCTTCAGGGCCCAATAGC 59.637 50.000 27.56 0.0 0.00 2.97 R
4197 4659 8.794553 CAGTATAGAAGGGTATAGTGTACCTTG 58.205 40.741 14.98 0.0 43.03 3.61 R
4211 4673 9.057089 GTAAACAATGGATTCAGTATAGAAGGG 57.943 37.037 0.00 0.0 0.00 3.95 R
4216 4678 9.838339 AAGGAGTAAACAATGGATTCAGTATAG 57.162 33.333 0.00 0.0 0.00 1.31 R
4339 4801 2.161410 TGTTATGCAAATGAGGCGTGAC 59.839 45.455 0.00 0.0 37.31 3.67 R
4369 4831 1.810959 TTCCCCCATAAACACGAACG 58.189 50.000 0.00 0.0 0.00 3.95 R
4578 5053 0.036732 TCTTGCTTGGCCGAGAACAT 59.963 50.000 25.25 0.0 0.00 2.71 R
6155 6813 0.858583 GACACCAAAATTTGCGGCAC 59.141 50.000 0.05 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.326836 GCCCTTGCATCCTCTATACTC 57.673 52.381 0.00 0.00 37.47 2.59
21 22 2.027653 GCCCTTGCATCCTCTATACTCC 60.028 54.545 0.00 0.00 37.47 3.85
22 23 3.242867 CCCTTGCATCCTCTATACTCCA 58.757 50.000 0.00 0.00 0.00 3.86
23 24 3.648067 CCCTTGCATCCTCTATACTCCAA 59.352 47.826 0.00 0.00 0.00 3.53
24 25 4.503991 CCCTTGCATCCTCTATACTCCAAC 60.504 50.000 0.00 0.00 0.00 3.77
25 26 4.346418 CCTTGCATCCTCTATACTCCAACT 59.654 45.833 0.00 0.00 0.00 3.16
26 27 5.510520 CCTTGCATCCTCTATACTCCAACTC 60.511 48.000 0.00 0.00 0.00 3.01
42 43 3.551890 CCAACTCGCACACTATCATGTAC 59.448 47.826 0.00 0.00 0.00 2.90
82 83 7.472543 GGTAGTGCTAAATATCAACAAACCTG 58.527 38.462 0.00 0.00 0.00 4.00
94 95 6.197364 TCAACAAACCTGACGTAATTTTGT 57.803 33.333 6.87 6.87 41.09 2.83
96 97 7.188157 TCAACAAACCTGACGTAATTTTGTAC 58.812 34.615 11.42 0.00 39.00 2.90
104 105 6.854381 CCTGACGTAATTTTGTACCTTTTCAC 59.146 38.462 0.00 0.00 0.00 3.18
105 106 7.317842 TGACGTAATTTTGTACCTTTTCACA 57.682 32.000 0.00 0.00 0.00 3.58
108 109 6.319405 ACGTAATTTTGTACCTTTTCACACCT 59.681 34.615 0.00 0.00 0.00 4.00
124 127 7.941431 TTCACACCTTTAAAGAAAACTACCA 57.059 32.000 16.98 0.00 0.00 3.25
125 128 7.941431 TCACACCTTTAAAGAAAACTACCAA 57.059 32.000 16.98 0.00 0.00 3.67
127 130 9.629878 TCACACCTTTAAAGAAAACTACCAATA 57.370 29.630 16.98 0.00 0.00 1.90
128 131 9.893305 CACACCTTTAAAGAAAACTACCAATAG 57.107 33.333 16.98 0.00 34.25 1.73
139 142 9.930693 AGAAAACTACCAATAGTACTCTTGAAG 57.069 33.333 19.55 17.24 41.00 3.02
140 143 9.708092 GAAAACTACCAATAGTACTCTTGAAGT 57.292 33.333 19.55 17.74 41.00 3.01
141 144 9.708092 AAAACTACCAATAGTACTCTTGAAGTC 57.292 33.333 19.55 0.00 41.00 3.01
142 145 8.418597 AACTACCAATAGTACTCTTGAAGTCA 57.581 34.615 19.55 2.59 41.00 3.41
143 146 8.596781 ACTACCAATAGTACTCTTGAAGTCAT 57.403 34.615 19.55 2.90 40.02 3.06
144 147 9.036980 ACTACCAATAGTACTCTTGAAGTCATT 57.963 33.333 19.55 0.00 40.02 2.57
147 150 9.823647 ACCAATAGTACTCTTGAAGTCATTATG 57.176 33.333 19.55 4.44 39.55 1.90
148 151 9.823647 CCAATAGTACTCTTGAAGTCATTATGT 57.176 33.333 19.55 0.00 39.55 2.29
217 220 9.016576 CCTTCATAGGACAACATGTGATGTTCC 62.017 44.444 0.00 5.24 46.21 3.62
238 241 6.918067 TCCGATATTCAGAGTGGATTACAT 57.082 37.500 0.00 0.00 0.00 2.29
294 297 2.819019 TCTTGATGATTCCGCTTTGCAA 59.181 40.909 0.00 0.00 0.00 4.08
326 329 5.109210 TGATGGTTTGTCGCACTAGAATAG 58.891 41.667 0.00 0.00 46.50 1.73
333 336 6.894339 TTGTCGCACTAGAATAGATGGATA 57.106 37.500 0.00 0.00 42.77 2.59
334 337 7.468141 TTGTCGCACTAGAATAGATGGATAT 57.532 36.000 0.00 0.00 42.77 1.63
335 338 8.575649 TTGTCGCACTAGAATAGATGGATATA 57.424 34.615 0.00 0.00 42.77 0.86
336 339 8.214721 TGTCGCACTAGAATAGATGGATATAG 57.785 38.462 0.00 0.00 42.77 1.31
337 340 7.283354 TGTCGCACTAGAATAGATGGATATAGG 59.717 40.741 0.00 0.00 42.77 2.57
339 342 7.717436 TCGCACTAGAATAGATGGATATAGGAG 59.283 40.741 0.00 0.00 42.77 3.69
340 343 7.500892 CGCACTAGAATAGATGGATATAGGAGT 59.499 40.741 0.00 0.00 42.77 3.85
341 344 8.629158 GCACTAGAATAGATGGATATAGGAGTG 58.371 40.741 0.00 0.00 42.77 3.51
346 349 9.607333 AGAATAGATGGATATAGGAGTGAAACA 57.393 33.333 0.00 0.00 41.43 2.83
351 369 9.607333 AGATGGATATAGGAGTGAAACAATAGA 57.393 33.333 0.00 0.00 41.43 1.98
364 382 6.375455 GTGAAACAATAGATTGGAGTCATGGT 59.625 38.462 7.16 0.00 41.96 3.55
365 383 7.552687 GTGAAACAATAGATTGGAGTCATGGTA 59.447 37.037 7.16 0.00 41.96 3.25
371 389 4.712476 AGATTGGAGTCATGGTAGAATGC 58.288 43.478 0.00 0.00 0.00 3.56
387 405 4.737054 AGAATGCCGAAAATTCACATCAC 58.263 39.130 7.22 0.00 36.65 3.06
388 406 3.508744 ATGCCGAAAATTCACATCACC 57.491 42.857 0.00 0.00 0.00 4.02
390 408 1.818674 GCCGAAAATTCACATCACCCT 59.181 47.619 0.00 0.00 0.00 4.34
391 409 2.231235 GCCGAAAATTCACATCACCCTT 59.769 45.455 0.00 0.00 0.00 3.95
393 411 3.758554 CCGAAAATTCACATCACCCTTCT 59.241 43.478 0.00 0.00 0.00 2.85
394 412 4.941263 CCGAAAATTCACATCACCCTTCTA 59.059 41.667 0.00 0.00 0.00 2.10
396 414 6.403636 CCGAAAATTCACATCACCCTTCTAAG 60.404 42.308 0.00 0.00 0.00 2.18
397 415 6.371548 CGAAAATTCACATCACCCTTCTAAGA 59.628 38.462 0.00 0.00 0.00 2.10
443 479 7.083875 TGTAAGAATGCGAAAATTCTAAGGG 57.916 36.000 8.34 0.00 44.35 3.95
445 481 6.590234 AAGAATGCGAAAATTCTAAGGGTT 57.410 33.333 8.34 0.00 44.35 4.11
449 485 7.393515 AGAATGCGAAAATTCTAAGGGTTTAGT 59.606 33.333 6.64 0.00 43.52 2.24
474 510 9.698617 GTGTTTACGCTTATTAAGATACTTTGG 57.301 33.333 7.63 0.00 0.00 3.28
480 516 7.822822 ACGCTTATTAAGATACTTTGGTCTTGT 59.177 33.333 7.63 0.00 36.23 3.16
544 580 3.941573 ACCAATGCAATCCCAACAAATC 58.058 40.909 0.00 0.00 0.00 2.17
545 581 3.327172 ACCAATGCAATCCCAACAAATCA 59.673 39.130 0.00 0.00 0.00 2.57
554 590 7.147949 TGCAATCCCAACAAATCAAACAATTTT 60.148 29.630 0.00 0.00 0.00 1.82
580 616 7.076842 AGACATACAAATGTTCATTTCCTCG 57.923 36.000 7.67 1.10 46.49 4.63
598 634 4.000325 CCTCGTGAACAATCAATGGTGTA 59.000 43.478 0.00 0.00 37.30 2.90
601 637 4.688879 TCGTGAACAATCAATGGTGTAGAC 59.311 41.667 0.00 0.00 37.30 2.59
602 638 4.142902 CGTGAACAATCAATGGTGTAGACC 60.143 45.833 1.06 1.06 39.02 3.85
616 653 5.603813 TGGTGTAGACCTAACTAAGTTGGTT 59.396 40.000 10.86 9.72 43.58 3.67
622 659 4.711399 ACCTAACTAAGTTGGTTGTGTCC 58.289 43.478 14.31 0.00 0.00 4.02
689 726 9.706691 TGCTTGAATATAGTACTAATTGTAGCC 57.293 33.333 6.70 0.00 0.00 3.93
713 750 7.254692 GCCTATTCTTTTACTTACGGGAATCAC 60.255 40.741 0.00 0.00 0.00 3.06
718 755 8.712285 TCTTTTACTTACGGGAATCACAATAG 57.288 34.615 0.00 0.00 0.00 1.73
729 767 4.433615 GAATCACAATAGGTCTTCGCTCA 58.566 43.478 0.00 0.00 0.00 4.26
739 777 2.806244 GGTCTTCGCTCAGCTGTAAAAA 59.194 45.455 14.67 4.09 0.00 1.94
741 779 4.436183 GGTCTTCGCTCAGCTGTAAAAATC 60.436 45.833 14.67 0.05 0.00 2.17
750 788 7.410087 CGCTCAGCTGTAAAAATCTTGAAATTG 60.410 37.037 14.67 0.00 0.00 2.32
775 813 7.094805 TGCTATGAGTGGAATTTGTACTTCAAC 60.095 37.037 0.00 0.00 35.61 3.18
782 820 8.375506 AGTGGAATTTGTACTTCAACTGATCTA 58.624 33.333 3.25 0.00 35.91 1.98
784 822 7.606456 TGGAATTTGTACTTCAACTGATCTACC 59.394 37.037 0.00 0.00 35.61 3.18
840 1097 9.408648 AGTAATATTGGAAAACCCTAGTGAATG 57.591 33.333 0.00 0.00 35.38 2.67
841 1098 9.403583 GTAATATTGGAAAACCCTAGTGAATGA 57.596 33.333 0.00 0.00 35.38 2.57
842 1099 8.893563 AATATTGGAAAACCCTAGTGAATGAA 57.106 30.769 0.00 0.00 35.38 2.57
843 1100 9.492730 AATATTGGAAAACCCTAGTGAATGAAT 57.507 29.630 0.00 0.00 35.38 2.57
854 1111 8.960591 ACCCTAGTGAATGAATCAAACTATTTG 58.039 33.333 4.88 0.00 40.50 2.32
879 1168 6.916360 ACCATCAATTTGAAAGGCTCTTTA 57.084 33.333 16.75 0.00 31.30 1.85
893 1182 6.803154 AGGCTCTTTATGTTTGTTCTACAC 57.197 37.500 0.00 0.00 0.00 2.90
895 1184 6.428159 AGGCTCTTTATGTTTGTTCTACACAG 59.572 38.462 0.00 0.00 36.48 3.66
942 1234 2.434359 GAACGGCCGAACCCAGAG 60.434 66.667 35.90 0.00 33.26 3.35
944 1236 2.444700 GAACGGCCGAACCCAGAGAA 62.445 60.000 35.90 0.00 33.26 2.87
1009 1305 4.514577 ACGGCGAGATGCTTCGGG 62.515 66.667 16.62 0.00 45.43 5.14
1012 1308 4.838152 GCGAGATGCTTCGGGGCA 62.838 66.667 5.77 5.77 46.63 5.36
1156 1452 4.629523 TCCACCGCCCCGTCAAAC 62.630 66.667 0.00 0.00 0.00 2.93
1386 1685 1.539124 GGAGGTGGTGGACTTCCCT 60.539 63.158 0.00 0.00 43.68 4.20
1389 1688 2.047179 GTGGTGGACTTCCCTCGC 60.047 66.667 0.00 0.00 35.38 5.03
1392 1691 2.579738 GTGGACTTCCCTCGCCTC 59.420 66.667 0.00 0.00 35.38 4.70
1597 1899 2.425668 GTCTTCTTCGAGGAGGAGAAGG 59.574 54.545 18.92 5.79 42.85 3.46
1901 2206 1.620822 GACAAGCCCAAAGGTGACAT 58.379 50.000 0.00 0.00 34.57 3.06
1925 2230 6.240145 TGTTCTCTTCCACATTGATGAATGA 58.760 36.000 12.12 0.00 41.49 2.57
1967 2333 2.739885 TGGCAATGTATTGGTTGTGC 57.260 45.000 6.72 0.00 38.21 4.57
1970 2336 2.736192 GGCAATGTATTGGTTGTGCAAC 59.264 45.455 6.52 6.52 38.21 4.17
2060 2428 7.201556 CCTTTTATGTAGATGCAGTGTGTGTAG 60.202 40.741 0.00 0.00 0.00 2.74
2086 2454 6.620678 TGCTTACTTGCAGCCTTTATTTTAG 58.379 36.000 0.00 0.00 38.12 1.85
2116 2484 1.341285 CCATCTTGCAGAATGGGTGGA 60.341 52.381 17.55 0.00 35.86 4.02
2147 2515 6.891361 TGGATGTGGTACATTTGAATTCAGAT 59.109 34.615 8.41 6.96 44.52 2.90
2148 2516 7.396907 TGGATGTGGTACATTTGAATTCAGATT 59.603 33.333 8.69 4.38 44.52 2.40
2149 2517 8.253113 GGATGTGGTACATTTGAATTCAGATTT 58.747 33.333 8.69 5.88 44.52 2.17
2166 2534 8.437360 TTCAGATTTATATGTACAGTTGCAGG 57.563 34.615 0.33 0.00 0.00 4.85
2167 2535 7.564793 TCAGATTTATATGTACAGTTGCAGGT 58.435 34.615 0.33 0.00 0.00 4.00
2168 2536 8.046708 TCAGATTTATATGTACAGTTGCAGGTT 58.953 33.333 0.33 0.00 0.00 3.50
2169 2537 8.338259 CAGATTTATATGTACAGTTGCAGGTTC 58.662 37.037 0.33 0.00 0.00 3.62
2170 2538 8.046708 AGATTTATATGTACAGTTGCAGGTTCA 58.953 33.333 0.33 0.00 0.00 3.18
2171 2539 6.978343 TTATATGTACAGTTGCAGGTTCAC 57.022 37.500 0.33 0.00 0.00 3.18
2172 2540 1.577468 TGTACAGTTGCAGGTTCACG 58.423 50.000 0.00 0.00 0.00 4.35
2173 2541 1.137282 TGTACAGTTGCAGGTTCACGA 59.863 47.619 0.00 0.00 0.00 4.35
2174 2542 2.206750 GTACAGTTGCAGGTTCACGAA 58.793 47.619 0.00 0.00 0.00 3.85
2175 2543 1.014352 ACAGTTGCAGGTTCACGAAC 58.986 50.000 1.12 1.12 40.45 3.95
2176 2544 1.299541 CAGTTGCAGGTTCACGAACT 58.700 50.000 9.63 0.00 40.94 3.01
2177 2545 1.670811 CAGTTGCAGGTTCACGAACTT 59.329 47.619 9.63 0.00 40.94 2.66
2178 2546 2.097466 CAGTTGCAGGTTCACGAACTTT 59.903 45.455 9.63 0.00 40.94 2.66
2179 2547 2.752903 AGTTGCAGGTTCACGAACTTTT 59.247 40.909 9.63 0.00 40.94 2.27
2180 2548 3.105937 GTTGCAGGTTCACGAACTTTTC 58.894 45.455 9.63 0.00 40.94 2.29
2181 2549 1.673920 TGCAGGTTCACGAACTTTTCC 59.326 47.619 9.63 0.00 40.94 3.13
2182 2550 1.673920 GCAGGTTCACGAACTTTTCCA 59.326 47.619 9.63 0.00 40.94 3.53
2183 2551 2.293399 GCAGGTTCACGAACTTTTCCAT 59.707 45.455 9.63 0.00 40.94 3.41
2184 2552 3.243401 GCAGGTTCACGAACTTTTCCATT 60.243 43.478 9.63 0.00 40.94 3.16
2185 2553 4.023536 GCAGGTTCACGAACTTTTCCATTA 60.024 41.667 9.63 0.00 40.94 1.90
2186 2554 5.449304 CAGGTTCACGAACTTTTCCATTAC 58.551 41.667 9.63 0.00 40.94 1.89
2187 2555 5.008217 CAGGTTCACGAACTTTTCCATTACA 59.992 40.000 9.63 0.00 40.94 2.41
2188 2556 5.008316 AGGTTCACGAACTTTTCCATTACAC 59.992 40.000 9.63 0.00 40.94 2.90
2189 2557 4.718858 TCACGAACTTTTCCATTACACG 57.281 40.909 0.00 0.00 0.00 4.49
2190 2558 3.495377 TCACGAACTTTTCCATTACACGG 59.505 43.478 0.00 0.00 0.00 4.94
2191 2559 3.249080 CACGAACTTTTCCATTACACGGT 59.751 43.478 0.00 0.00 0.00 4.83
2192 2560 3.495753 ACGAACTTTTCCATTACACGGTC 59.504 43.478 0.00 0.00 0.00 4.79
2193 2561 3.120442 CGAACTTTTCCATTACACGGTCC 60.120 47.826 0.00 0.00 0.00 4.46
2194 2562 3.782656 ACTTTTCCATTACACGGTCCT 57.217 42.857 0.00 0.00 0.00 3.85
2195 2563 3.408634 ACTTTTCCATTACACGGTCCTG 58.591 45.455 0.00 0.00 0.00 3.86
2196 2564 3.071892 ACTTTTCCATTACACGGTCCTGA 59.928 43.478 0.00 0.00 0.00 3.86
2197 2565 3.992943 TTTCCATTACACGGTCCTGAT 57.007 42.857 0.00 0.00 0.00 2.90
2198 2566 5.046159 ACTTTTCCATTACACGGTCCTGATA 60.046 40.000 0.00 0.00 0.00 2.15
2199 2567 5.623956 TTTCCATTACACGGTCCTGATAT 57.376 39.130 0.00 0.00 0.00 1.63
2200 2568 4.600692 TCCATTACACGGTCCTGATATG 57.399 45.455 0.00 0.00 0.00 1.78
2201 2569 3.323691 TCCATTACACGGTCCTGATATGG 59.676 47.826 0.00 0.00 34.09 2.74
2202 2570 3.323691 CCATTACACGGTCCTGATATGGA 59.676 47.826 14.10 0.00 34.58 3.41
2203 2571 4.560128 CATTACACGGTCCTGATATGGAG 58.440 47.826 0.00 0.00 36.69 3.86
2204 2572 1.414158 ACACGGTCCTGATATGGAGG 58.586 55.000 0.00 0.00 36.69 4.30
2205 2573 1.343075 ACACGGTCCTGATATGGAGGT 60.343 52.381 0.00 0.00 36.69 3.85
2206 2574 2.091499 ACACGGTCCTGATATGGAGGTA 60.091 50.000 0.00 0.00 36.69 3.08
2207 2575 2.558795 CACGGTCCTGATATGGAGGTAG 59.441 54.545 0.00 0.00 36.69 3.18
2208 2576 2.445905 ACGGTCCTGATATGGAGGTAGA 59.554 50.000 0.00 0.00 36.69 2.59
2209 2577 3.076182 ACGGTCCTGATATGGAGGTAGAT 59.924 47.826 0.00 0.00 36.69 1.98
2210 2578 4.090090 CGGTCCTGATATGGAGGTAGATT 58.910 47.826 0.00 0.00 36.69 2.40
2211 2579 4.528596 CGGTCCTGATATGGAGGTAGATTT 59.471 45.833 0.00 0.00 36.69 2.17
2212 2580 5.715279 CGGTCCTGATATGGAGGTAGATTTA 59.285 44.000 0.00 0.00 36.69 1.40
2213 2581 6.127591 CGGTCCTGATATGGAGGTAGATTTAG 60.128 46.154 0.00 0.00 36.69 1.85
2214 2582 6.954684 GGTCCTGATATGGAGGTAGATTTAGA 59.045 42.308 0.00 0.00 36.69 2.10
2215 2583 7.621683 GGTCCTGATATGGAGGTAGATTTAGAT 59.378 40.741 0.00 0.00 36.69 1.98
2216 2584 9.041354 GTCCTGATATGGAGGTAGATTTAGATT 57.959 37.037 0.00 0.00 36.69 2.40
2217 2585 9.621239 TCCTGATATGGAGGTAGATTTAGATTT 57.379 33.333 0.00 0.00 31.85 2.17
2218 2586 9.664332 CCTGATATGGAGGTAGATTTAGATTTG 57.336 37.037 0.00 0.00 0.00 2.32
2219 2587 9.664332 CTGATATGGAGGTAGATTTAGATTTGG 57.336 37.037 0.00 0.00 0.00 3.28
2220 2588 8.103305 TGATATGGAGGTAGATTTAGATTTGGC 58.897 37.037 0.00 0.00 0.00 4.52
2221 2589 5.708736 TGGAGGTAGATTTAGATTTGGCA 57.291 39.130 0.00 0.00 0.00 4.92
2222 2590 6.266131 TGGAGGTAGATTTAGATTTGGCAT 57.734 37.500 0.00 0.00 0.00 4.40
2223 2591 6.672593 TGGAGGTAGATTTAGATTTGGCATT 58.327 36.000 0.00 0.00 0.00 3.56
2224 2592 7.125391 TGGAGGTAGATTTAGATTTGGCATTT 58.875 34.615 0.00 0.00 0.00 2.32
2225 2593 7.619302 TGGAGGTAGATTTAGATTTGGCATTTT 59.381 33.333 0.00 0.00 0.00 1.82
2226 2594 7.922811 GGAGGTAGATTTAGATTTGGCATTTTG 59.077 37.037 0.00 0.00 0.00 2.44
2227 2595 8.593945 AGGTAGATTTAGATTTGGCATTTTGA 57.406 30.769 0.00 0.00 0.00 2.69
2228 2596 9.034800 AGGTAGATTTAGATTTGGCATTTTGAA 57.965 29.630 0.00 0.00 0.00 2.69
2229 2597 9.822185 GGTAGATTTAGATTTGGCATTTTGAAT 57.178 29.630 0.00 0.00 0.00 2.57
2231 2599 8.953368 AGATTTAGATTTGGCATTTTGAATCC 57.047 30.769 5.46 0.00 30.67 3.01
2232 2600 8.542080 AGATTTAGATTTGGCATTTTGAATCCA 58.458 29.630 5.46 0.00 30.67 3.41
2233 2601 7.903995 TTTAGATTTGGCATTTTGAATCCAC 57.096 32.000 5.46 0.00 30.67 4.02
2234 2602 4.835678 AGATTTGGCATTTTGAATCCACC 58.164 39.130 5.46 0.00 30.67 4.61
2235 2603 4.533311 AGATTTGGCATTTTGAATCCACCT 59.467 37.500 5.46 0.00 30.67 4.00
2236 2604 4.703379 TTTGGCATTTTGAATCCACCTT 57.297 36.364 0.00 0.00 0.00 3.50
2237 2605 4.703379 TTGGCATTTTGAATCCACCTTT 57.297 36.364 0.00 0.00 0.00 3.11
2238 2606 4.005487 TGGCATTTTGAATCCACCTTTG 57.995 40.909 0.00 0.00 0.00 2.77
2239 2607 3.645212 TGGCATTTTGAATCCACCTTTGA 59.355 39.130 0.00 0.00 0.00 2.69
2240 2608 4.286549 TGGCATTTTGAATCCACCTTTGAT 59.713 37.500 0.00 0.00 0.00 2.57
2241 2609 4.632688 GGCATTTTGAATCCACCTTTGATG 59.367 41.667 0.00 0.00 0.00 3.07
2242 2610 5.240121 GCATTTTGAATCCACCTTTGATGT 58.760 37.500 0.00 0.00 0.00 3.06
2243 2611 6.397272 GCATTTTGAATCCACCTTTGATGTA 58.603 36.000 0.00 0.00 0.00 2.29
2244 2612 6.532657 GCATTTTGAATCCACCTTTGATGTAG 59.467 38.462 0.00 0.00 0.00 2.74
2245 2613 7.577426 GCATTTTGAATCCACCTTTGATGTAGA 60.577 37.037 0.00 0.00 0.00 2.59
2246 2614 8.472413 CATTTTGAATCCACCTTTGATGTAGAT 58.528 33.333 0.00 0.00 0.00 1.98
2247 2615 9.699410 ATTTTGAATCCACCTTTGATGTAGATA 57.301 29.630 0.00 0.00 0.00 1.98
2248 2616 8.506168 TTTGAATCCACCTTTGATGTAGATAC 57.494 34.615 0.00 0.00 0.00 2.24
2249 2617 7.194112 TGAATCCACCTTTGATGTAGATACA 57.806 36.000 0.00 0.00 40.98 2.29
2250 2618 7.275183 TGAATCCACCTTTGATGTAGATACAG 58.725 38.462 0.00 0.00 39.92 2.74
2251 2619 6.814954 ATCCACCTTTGATGTAGATACAGT 57.185 37.500 0.00 0.00 39.92 3.55
2252 2620 7.914427 ATCCACCTTTGATGTAGATACAGTA 57.086 36.000 0.00 0.00 39.92 2.74
2253 2621 7.914427 TCCACCTTTGATGTAGATACAGTAT 57.086 36.000 0.00 0.00 39.92 2.12
2254 2622 7.726216 TCCACCTTTGATGTAGATACAGTATG 58.274 38.462 0.00 0.00 46.00 2.39
2273 2641 6.963242 CAGTATGTGTAAATGCTTACTTGCAG 59.037 38.462 0.00 0.00 46.71 4.41
2274 2642 4.159377 TGTGTAAATGCTTACTTGCAGC 57.841 40.909 0.00 0.00 46.71 5.25
2275 2643 3.057596 TGTGTAAATGCTTACTTGCAGCC 60.058 43.478 0.00 0.00 46.71 4.85
2276 2644 3.191371 GTGTAAATGCTTACTTGCAGCCT 59.809 43.478 0.00 0.00 46.71 4.58
2277 2645 3.826157 TGTAAATGCTTACTTGCAGCCTT 59.174 39.130 0.00 0.00 46.71 4.35
2278 2646 4.280677 TGTAAATGCTTACTTGCAGCCTTT 59.719 37.500 4.17 4.17 46.71 3.11
2279 2647 5.475220 TGTAAATGCTTACTTGCAGCCTTTA 59.525 36.000 0.00 2.62 46.71 1.85
2280 2648 5.665916 AAATGCTTACTTGCAGCCTTTAT 57.334 34.783 0.00 0.00 46.71 1.40
2281 2649 5.665916 AATGCTTACTTGCAGCCTTTATT 57.334 34.783 0.00 0.00 46.71 1.40
2282 2650 5.665916 ATGCTTACTTGCAGCCTTTATTT 57.334 34.783 0.00 0.00 46.71 1.40
2283 2651 5.467035 TGCTTACTTGCAGCCTTTATTTT 57.533 34.783 0.00 0.00 38.12 1.82
2284 2652 6.582677 TGCTTACTTGCAGCCTTTATTTTA 57.417 33.333 0.00 0.00 38.12 1.52
2285 2653 6.620678 TGCTTACTTGCAGCCTTTATTTTAG 58.379 36.000 0.00 0.00 38.12 1.85
2286 2654 6.432783 TGCTTACTTGCAGCCTTTATTTTAGA 59.567 34.615 0.00 0.00 38.12 2.10
2287 2655 7.040062 TGCTTACTTGCAGCCTTTATTTTAGAA 60.040 33.333 0.00 0.00 38.12 2.10
2288 2656 7.976175 GCTTACTTGCAGCCTTTATTTTAGAAT 59.024 33.333 0.00 0.00 0.00 2.40
2289 2657 9.860898 CTTACTTGCAGCCTTTATTTTAGAATT 57.139 29.630 0.00 0.00 0.00 2.17
2290 2658 9.638239 TTACTTGCAGCCTTTATTTTAGAATTG 57.362 29.630 0.00 0.00 0.00 2.32
2291 2659 7.099120 ACTTGCAGCCTTTATTTTAGAATTGG 58.901 34.615 0.00 0.00 0.00 3.16
2292 2660 6.603940 TGCAGCCTTTATTTTAGAATTGGT 57.396 33.333 0.00 0.00 0.00 3.67
2293 2661 6.397272 TGCAGCCTTTATTTTAGAATTGGTG 58.603 36.000 0.00 0.00 0.00 4.17
2294 2662 5.812127 GCAGCCTTTATTTTAGAATTGGTGG 59.188 40.000 0.00 0.00 0.00 4.61
2295 2663 5.812127 CAGCCTTTATTTTAGAATTGGTGGC 59.188 40.000 0.00 0.00 36.11 5.01
2296 2664 5.104941 AGCCTTTATTTTAGAATTGGTGGCC 60.105 40.000 0.00 0.00 36.47 5.36
2297 2665 5.337975 GCCTTTATTTTAGAATTGGTGGCCA 60.338 40.000 0.00 0.00 0.00 5.36
2298 2666 6.632445 GCCTTTATTTTAGAATTGGTGGCCAT 60.632 38.462 9.72 0.00 31.53 4.40
2299 2667 6.986231 CCTTTATTTTAGAATTGGTGGCCATC 59.014 38.462 9.72 9.78 31.53 3.51
2300 2668 7.147672 CCTTTATTTTAGAATTGGTGGCCATCT 60.148 37.037 18.94 14.26 31.53 2.90
2301 2669 7.732222 TTATTTTAGAATTGGTGGCCATCTT 57.268 32.000 18.94 3.41 31.53 2.40
2302 2670 5.404466 TTTTAGAATTGGTGGCCATCTTG 57.596 39.130 18.94 0.00 31.53 3.02
2303 2671 1.188863 AGAATTGGTGGCCATCTTGC 58.811 50.000 18.94 3.25 31.53 4.01
2304 2672 0.896923 GAATTGGTGGCCATCTTGCA 59.103 50.000 18.94 0.00 31.53 4.08
2305 2673 0.899720 AATTGGTGGCCATCTTGCAG 59.100 50.000 18.94 0.00 31.53 4.41
2306 2674 0.040058 ATTGGTGGCCATCTTGCAGA 59.960 50.000 18.94 0.00 31.53 4.26
2307 2675 0.178967 TTGGTGGCCATCTTGCAGAA 60.179 50.000 18.94 0.00 31.53 3.02
2308 2676 0.040058 TGGTGGCCATCTTGCAGAAT 59.960 50.000 18.94 0.00 0.00 2.40
2309 2677 0.458669 GGTGGCCATCTTGCAGAATG 59.541 55.000 9.72 3.95 40.87 2.67
2310 2678 0.458669 GTGGCCATCTTGCAGAATGG 59.541 55.000 9.72 19.90 35.86 3.16
2311 2679 0.685131 TGGCCATCTTGCAGAATGGG 60.685 55.000 23.43 9.53 35.86 4.00
2312 2680 0.685458 GGCCATCTTGCAGAATGGGT 60.685 55.000 23.43 0.00 35.86 4.51
2313 2681 0.458669 GCCATCTTGCAGAATGGGTG 59.541 55.000 23.43 5.60 35.86 4.61
2314 2682 1.108776 CCATCTTGCAGAATGGGTGG 58.891 55.000 17.55 6.19 35.86 4.61
2315 2683 1.108776 CATCTTGCAGAATGGGTGGG 58.891 55.000 3.15 0.00 35.86 4.61
2316 2684 0.706433 ATCTTGCAGAATGGGTGGGT 59.294 50.000 0.00 0.00 35.86 4.51
2317 2685 0.482446 TCTTGCAGAATGGGTGGGTT 59.518 50.000 0.00 0.00 35.86 4.11
2318 2686 1.707989 TCTTGCAGAATGGGTGGGTTA 59.292 47.619 0.00 0.00 35.86 2.85
2319 2687 2.094675 CTTGCAGAATGGGTGGGTTAG 58.905 52.381 0.00 0.00 35.86 2.34
2320 2688 1.367346 TGCAGAATGGGTGGGTTAGA 58.633 50.000 0.00 0.00 35.86 2.10
2321 2689 1.922447 TGCAGAATGGGTGGGTTAGAT 59.078 47.619 0.00 0.00 35.86 1.98
2322 2690 2.301346 GCAGAATGGGTGGGTTAGATG 58.699 52.381 0.00 0.00 35.86 2.90
2323 2691 2.936202 CAGAATGGGTGGGTTAGATGG 58.064 52.381 0.00 0.00 0.00 3.51
2324 2692 2.509548 CAGAATGGGTGGGTTAGATGGA 59.490 50.000 0.00 0.00 0.00 3.41
2325 2693 3.139025 CAGAATGGGTGGGTTAGATGGAT 59.861 47.826 0.00 0.00 0.00 3.41
2326 2694 3.139025 AGAATGGGTGGGTTAGATGGATG 59.861 47.826 0.00 0.00 0.00 3.51
2327 2695 0.550914 TGGGTGGGTTAGATGGATGC 59.449 55.000 0.00 0.00 0.00 3.91
2335 2703 6.156256 GGTGGGTTAGATGGATGCTGTATATA 59.844 42.308 0.00 0.00 0.00 0.86
2344 2712 8.996655 AGATGGATGCTGTATATATACCATTGT 58.003 33.333 18.20 7.22 37.08 2.71
2363 2731 4.886247 TGTAGGTTCACAAACTTTTCCG 57.114 40.909 0.00 0.00 35.61 4.30
2386 2754 6.094325 CCGTAATATGGTCCTGATCTAGAGTC 59.906 46.154 0.00 0.00 0.00 3.36
2432 2800 6.724694 TGGCATTTTGAATAACTGAATTGC 57.275 33.333 0.00 0.00 0.00 3.56
2535 2905 8.810652 TTAGTAAAAGAAATGGCATTGACAAC 57.189 30.769 14.47 7.85 0.00 3.32
2565 2935 7.115663 GCTGAACTTGTCTTTCTACTAACTCAG 59.884 40.741 0.00 0.00 0.00 3.35
2572 2942 8.190326 TGTCTTTCTACTAACTCAGAATGGAA 57.810 34.615 0.00 0.00 36.16 3.53
2698 3069 5.105146 TGTTGTTAATGTGGTTTTTGCTCCT 60.105 36.000 0.00 0.00 0.00 3.69
2836 3212 7.278203 GGTACTTTCTATTCTTCTCTTTTCGGG 59.722 40.741 0.00 0.00 0.00 5.14
2967 3344 1.204704 TGGACTGATGACATCGTGTCC 59.795 52.381 32.16 32.16 46.40 4.02
2981 3358 0.972883 GTGTCCTCTCTCCTGCACTT 59.027 55.000 0.00 0.00 0.00 3.16
2982 3359 2.171840 GTGTCCTCTCTCCTGCACTTA 58.828 52.381 0.00 0.00 0.00 2.24
2983 3360 2.563179 GTGTCCTCTCTCCTGCACTTAA 59.437 50.000 0.00 0.00 0.00 1.85
2984 3361 3.006967 GTGTCCTCTCTCCTGCACTTAAA 59.993 47.826 0.00 0.00 0.00 1.52
2985 3362 3.259374 TGTCCTCTCTCCTGCACTTAAAG 59.741 47.826 0.00 0.00 0.00 1.85
2986 3363 2.234908 TCCTCTCTCCTGCACTTAAAGC 59.765 50.000 0.00 0.00 0.00 3.51
2987 3364 2.626840 CTCTCTCCTGCACTTAAAGCC 58.373 52.381 0.00 0.00 0.00 4.35
2988 3365 2.235898 CTCTCTCCTGCACTTAAAGCCT 59.764 50.000 0.00 0.00 0.00 4.58
3002 3379 6.638468 CACTTAAAGCCTCATTTTGTGAACTC 59.362 38.462 0.00 0.00 36.14 3.01
3022 3400 4.287067 ACTCAAAGCCTATTTCCTGACTCA 59.713 41.667 0.00 0.00 0.00 3.41
3289 3722 9.502091 GTTATGCTACCTATGGAATGTTCAATA 57.498 33.333 0.00 0.00 0.00 1.90
3321 3758 6.155910 ACTGGAATGTAGATATGCTATCCTGG 59.844 42.308 9.91 0.00 32.90 4.45
3322 3759 5.426509 TGGAATGTAGATATGCTATCCTGGG 59.573 44.000 0.00 0.00 30.38 4.45
3466 3903 7.907389 TGGTCCTATCCTTTTGCTATATACAG 58.093 38.462 0.00 0.00 0.00 2.74
3522 3983 3.317993 ACATACAAGGTTTGAGGTGCAAC 59.682 43.478 0.00 0.00 35.91 4.17
3535 3996 2.801077 GTGCAACCACCCTTATAGGT 57.199 50.000 0.00 0.00 42.40 3.08
3536 3997 2.640184 GTGCAACCACCCTTATAGGTC 58.360 52.381 0.00 0.00 38.39 3.85
3537 3998 2.238898 GTGCAACCACCCTTATAGGTCT 59.761 50.000 0.00 0.00 38.39 3.85
3539 4000 3.453353 TGCAACCACCCTTATAGGTCTAC 59.547 47.826 0.00 0.00 38.39 2.59
3590 4051 6.417635 CCAAATCAACACGAATAATGCCATAC 59.582 38.462 0.00 0.00 0.00 2.39
3629 4090 9.862371 AACTTCTGAACTTACTCTACATGTATG 57.138 33.333 5.91 5.33 0.00 2.39
3741 4202 8.467402 ACTATTCACACTGAACTTATCTTTCG 57.533 34.615 0.00 0.00 39.45 3.46
3777 4238 3.195396 ACACATTTTGAGTTTGGTGCTGT 59.805 39.130 0.00 0.00 0.00 4.40
3784 4245 9.039870 CATTTTGAGTTTGGTGCTGTTATTTTA 57.960 29.630 0.00 0.00 0.00 1.52
3792 4253 6.952773 TGGTGCTGTTATTTTAAAGAGTGT 57.047 33.333 0.00 0.00 0.00 3.55
3868 4329 4.202050 GGTGCTGAATAAAGCCAGGTTATG 60.202 45.833 0.00 0.00 42.83 1.90
3898 4359 2.426024 CCCTGAAGATTTGCACCTGATG 59.574 50.000 0.00 0.00 0.00 3.07
4197 4659 1.672881 CCTCCGATGTTTTCTGCCATC 59.327 52.381 0.00 0.00 35.26 3.51
4211 4673 5.531122 TCTGCCATCAAGGTACACTATAC 57.469 43.478 0.00 0.00 40.61 1.47
4216 4678 5.742255 GCCATCAAGGTACACTATACCCTTC 60.742 48.000 0.00 0.00 40.61 3.46
4226 4688 9.531158 GGTACACTATACCCTTCTATACTGAAT 57.469 37.037 0.00 0.00 0.00 2.57
4272 4734 1.396301 GTCATGCTGTTGCTAGTGCTC 59.604 52.381 0.00 0.00 40.48 4.26
4279 4741 2.135139 TGTTGCTAGTGCTCGACTTTG 58.865 47.619 0.00 0.00 40.48 2.77
4369 4831 3.621268 TCATTTGCATAACAGTCTACGCC 59.379 43.478 0.00 0.00 0.00 5.68
4386 4853 1.650314 GCCGTTCGTGTTTATGGGGG 61.650 60.000 0.00 0.00 0.00 5.40
4461 4928 2.605257 AGCCGCCCTATCATACTGTAA 58.395 47.619 0.00 0.00 0.00 2.41
4472 4939 7.438459 CCCTATCATACTGTAACTGCTGTAAAC 59.562 40.741 0.00 0.00 0.00 2.01
4480 4947 6.317642 ACTGTAACTGCTGTAAACAATGACAA 59.682 34.615 11.33 0.00 0.00 3.18
4482 4949 4.836125 ACTGCTGTAAACAATGACAAGG 57.164 40.909 0.00 0.00 0.00 3.61
4512 4979 5.937975 ATTGGGTATGGTTTTTGATCCTG 57.062 39.130 0.00 0.00 0.00 3.86
4514 4981 2.430694 GGGTATGGTTTTTGATCCTGGC 59.569 50.000 0.00 0.00 0.00 4.85
4515 4982 3.365472 GGTATGGTTTTTGATCCTGGCT 58.635 45.455 0.00 0.00 0.00 4.75
4516 4983 4.532834 GGTATGGTTTTTGATCCTGGCTA 58.467 43.478 0.00 0.00 0.00 3.93
4517 4984 4.580580 GGTATGGTTTTTGATCCTGGCTAG 59.419 45.833 0.00 0.00 0.00 3.42
4518 4985 2.446435 TGGTTTTTGATCCTGGCTAGC 58.554 47.619 6.04 6.04 0.00 3.42
4519 4986 1.751351 GGTTTTTGATCCTGGCTAGCC 59.249 52.381 27.71 27.71 0.00 3.93
4520 4987 2.446435 GTTTTTGATCCTGGCTAGCCA 58.554 47.619 33.82 33.82 45.02 4.75
4521 4988 3.026694 GTTTTTGATCCTGGCTAGCCAT 58.973 45.455 35.93 22.48 46.15 4.40
4522 4989 3.386932 TTTTGATCCTGGCTAGCCATT 57.613 42.857 35.93 23.18 46.15 3.16
4718 5197 5.418840 ACATGGTTTTTCCTGCCTATTACTG 59.581 40.000 0.00 0.00 37.07 2.74
4745 5224 5.277490 CGCTTATCAACCAACCATGATGTAG 60.277 44.000 0.00 0.00 36.93 2.74
4752 5231 5.514500 ACCAACCATGATGTAGTAGGTTT 57.486 39.130 0.00 0.00 40.39 3.27
4791 5270 1.957668 TTGATCATCGGCATCAGGTG 58.042 50.000 0.00 0.00 31.84 4.00
4998 5477 4.597004 ACTCTCATGCCATGTTTGAATCT 58.403 39.130 4.31 0.00 0.00 2.40
5088 5568 1.139058 ACATACATTCGGTCCCTCTGC 59.861 52.381 0.00 0.00 0.00 4.26
5106 5586 1.302832 CGCAGACTTGGGGAAAGCT 60.303 57.895 0.00 0.00 39.76 3.74
5125 5605 2.164624 GCTCTTCGAAGGTCTGCTCTAA 59.835 50.000 24.37 0.62 0.00 2.10
5126 5606 3.765026 CTCTTCGAAGGTCTGCTCTAAC 58.235 50.000 24.37 0.00 0.00 2.34
5160 5641 6.918022 AGTAGAGCTTTGTTTTGTTTGCATAC 59.082 34.615 0.00 0.00 0.00 2.39
5175 5656 3.743521 TGCATACATTCCTCTATGTGCC 58.256 45.455 0.00 0.00 39.06 5.01
5197 5678 9.369904 GTGCCACATGATTTAACTGAATAAAAT 57.630 29.630 0.00 0.00 0.00 1.82
5251 5732 7.035004 TGGTTCTCAAAAAGAAGATTGTGTTG 58.965 34.615 0.00 0.00 44.66 3.33
5258 5749 7.487829 TCAAAAAGAAGATTGTGTTGTAAGTGC 59.512 33.333 0.00 0.00 0.00 4.40
5264 5755 0.655208 TGTGTTGTAAGTGCGTGCAG 59.345 50.000 0.00 0.00 0.00 4.41
5317 5809 1.967535 GCAAACTGCTTTCTCCCCC 59.032 57.895 0.00 0.00 40.96 5.40
5323 5815 1.428912 ACTGCTTTCTCCCCCAATGAA 59.571 47.619 0.00 0.00 0.00 2.57
5326 5818 2.225343 TGCTTTCTCCCCCAATGAATGT 60.225 45.455 0.00 0.00 0.00 2.71
5335 5832 3.451902 CCCCCAATGAATGTTAGCATGTT 59.548 43.478 0.00 0.00 35.15 2.71
5369 5867 2.887152 GCATGTATTGAACTGGGGGATC 59.113 50.000 0.00 0.00 0.00 3.36
5370 5868 3.435601 GCATGTATTGAACTGGGGGATCT 60.436 47.826 0.00 0.00 0.00 2.75
5371 5869 3.931907 TGTATTGAACTGGGGGATCTG 57.068 47.619 0.00 0.00 0.00 2.90
5451 5949 7.346208 TGAATGTAGTATCACAAAAGTGTCG 57.654 36.000 0.00 0.00 35.07 4.35
5453 5951 8.083462 TGAATGTAGTATCACAAAAGTGTCGTA 58.917 33.333 0.00 0.00 35.07 3.43
5549 6050 8.635328 TGTTGTTCTACTTGTCATGAGTTACTA 58.365 33.333 0.00 0.00 0.00 1.82
5582 6083 4.774124 TCTCCACCTCTTTTATGCTGATG 58.226 43.478 0.00 0.00 0.00 3.07
5890 6482 2.293399 GGTCAATGACGCTTGGAACTTT 59.707 45.455 7.35 0.00 32.65 2.66
5973 6565 0.248661 TTGCGATCGAGAGCAGCTAC 60.249 55.000 21.57 0.00 44.72 3.58
5982 6603 0.979665 AGAGCAGCTACTTCCAGCAA 59.020 50.000 0.00 0.00 44.35 3.91
5996 6617 2.186826 AGCAAGGTCGTGGTGCAAC 61.187 57.895 0.00 0.00 40.83 4.17
6018 6639 3.179443 CGCTGATACAGTGGTATGGTT 57.821 47.619 0.00 0.00 40.28 3.67
6020 6641 3.309682 CGCTGATACAGTGGTATGGTTTG 59.690 47.826 0.00 0.00 40.28 2.93
6023 6644 5.670485 CTGATACAGTGGTATGGTTTGCTA 58.330 41.667 0.00 0.00 40.28 3.49
6044 6700 8.125978 TGCTAGAATCAGGAATTCATTTGTTT 57.874 30.769 7.93 4.22 45.34 2.83
6045 6701 8.587608 TGCTAGAATCAGGAATTCATTTGTTTT 58.412 29.630 7.93 2.23 45.34 2.43
6104 6761 9.585099 TCATTTGCAAAACTATAATGAATGGAC 57.415 29.630 17.19 0.00 33.61 4.02
6128 6785 5.931146 CAGCCCTATGTTTTGCAAAATTGTA 59.069 36.000 26.24 17.25 0.00 2.41
6135 6792 6.517914 TGTTTTGCAAAATTGTAACGGATC 57.482 33.333 26.24 10.24 32.53 3.36
6138 6795 4.167554 TGCAAAATTGTAACGGATCCAC 57.832 40.909 13.41 2.89 0.00 4.02
6153 6811 1.103803 TCCACTCGTGATGTAGCTCC 58.896 55.000 0.00 0.00 0.00 4.70
6155 6813 1.202348 CCACTCGTGATGTAGCTCCTG 60.202 57.143 0.00 0.00 0.00 3.86
6170 6828 0.033228 TCCTGTGCCGCAAATTTTGG 59.967 50.000 10.96 2.42 0.00 3.28
6254 6957 6.494893 TGTTCTTGCATTATGTGTACTTCC 57.505 37.500 0.00 0.00 0.00 3.46
6265 6968 4.582701 TGTGTACTTCCAATGCAAAAGG 57.417 40.909 0.00 0.00 0.00 3.11
6350 7067 6.819397 AGGTAACCAAAGCTTAGCTTAAAG 57.181 37.500 20.43 13.54 43.61 1.85
6375 7092 6.122277 GGATCAAGATTGGTCAATTCAGGTA 58.878 40.000 8.04 0.00 40.07 3.08
6376 7093 6.603201 GGATCAAGATTGGTCAATTCAGGTAA 59.397 38.462 8.04 0.00 40.07 2.85
6377 7094 7.286316 GGATCAAGATTGGTCAATTCAGGTAAT 59.714 37.037 8.04 0.00 40.07 1.89
6378 7095 9.342308 GATCAAGATTGGTCAATTCAGGTAATA 57.658 33.333 0.91 0.00 38.20 0.98
6408 7125 0.523072 GCAGGTGTACATGTGCCAAG 59.477 55.000 17.46 6.37 0.00 3.61
6428 7145 4.937201 AGGGGTCAATCTCAACAAAAAC 57.063 40.909 0.00 0.00 0.00 2.43
6434 7153 3.129462 TCAATCTCAACAAAAACGGCACA 59.871 39.130 0.00 0.00 0.00 4.57
6435 7154 2.553079 TCTCAACAAAAACGGCACAC 57.447 45.000 0.00 0.00 0.00 3.82
6436 7155 1.813178 TCTCAACAAAAACGGCACACA 59.187 42.857 0.00 0.00 0.00 3.72
6437 7156 2.425312 TCTCAACAAAAACGGCACACAT 59.575 40.909 0.00 0.00 0.00 3.21
6438 7157 2.788786 CTCAACAAAAACGGCACACATC 59.211 45.455 0.00 0.00 0.00 3.06
6439 7158 1.857837 CAACAAAAACGGCACACATCC 59.142 47.619 0.00 0.00 0.00 3.51
6440 7159 1.107114 ACAAAAACGGCACACATCCA 58.893 45.000 0.00 0.00 0.00 3.41
6441 7160 1.478510 ACAAAAACGGCACACATCCAA 59.521 42.857 0.00 0.00 0.00 3.53
6442 7161 2.126467 CAAAAACGGCACACATCCAAG 58.874 47.619 0.00 0.00 0.00 3.61
6452 7171 3.620719 GCACACATCCAAGAGATCCTGAA 60.621 47.826 0.00 0.00 30.59 3.02
6455 7174 4.190001 CACATCCAAGAGATCCTGAACAG 58.810 47.826 0.00 0.00 30.59 3.16
6456 7175 3.204526 CATCCAAGAGATCCTGAACAGC 58.795 50.000 0.00 0.00 30.59 4.40
6475 7194 1.472376 GCCCTAGCTAGTCAAGTGCTG 60.472 57.143 19.31 0.78 37.62 4.41
6476 7195 2.103373 CCCTAGCTAGTCAAGTGCTGA 58.897 52.381 19.31 0.00 37.62 4.26
6482 7201 2.878406 GCTAGTCAAGTGCTGAAACCAA 59.122 45.455 0.00 0.00 35.22 3.67
6488 7207 1.109323 AGTGCTGAAACCAACCCTGC 61.109 55.000 0.00 0.00 0.00 4.85
6489 7208 1.109323 GTGCTGAAACCAACCCTGCT 61.109 55.000 0.00 0.00 0.00 4.24
6490 7209 1.108727 TGCTGAAACCAACCCTGCTG 61.109 55.000 0.00 0.00 0.00 4.41
6491 7210 1.809567 GCTGAAACCAACCCTGCTGG 61.810 60.000 1.89 1.89 40.05 4.85
6492 7211 0.178992 CTGAAACCAACCCTGCTGGA 60.179 55.000 11.88 0.00 37.40 3.86
6493 7212 0.178992 TGAAACCAACCCTGCTGGAG 60.179 55.000 11.88 3.93 37.40 3.86
6494 7213 0.110486 GAAACCAACCCTGCTGGAGA 59.890 55.000 11.88 0.00 37.40 3.71
6497 7216 0.329596 ACCAACCCTGCTGGAGAATC 59.670 55.000 11.88 0.00 37.40 2.52
6511 7230 2.208431 GAGAATCATCAGTCCCAAGCG 58.792 52.381 0.00 0.00 33.17 4.68
6513 7232 1.936547 GAATCATCAGTCCCAAGCGAC 59.063 52.381 0.00 0.00 0.00 5.19
6573 7292 3.213402 CCGCTCCTCGAGGTCCTC 61.213 72.222 30.17 16.09 41.67 3.71
6583 7302 3.398353 GAGGTCCTCCTTCGACGCG 62.398 68.421 7.78 3.53 45.24 6.01
6640 7359 1.817447 AGAAAGCAGAGCATTTGGAGC 59.183 47.619 0.00 0.00 0.00 4.70
6641 7360 1.817447 GAAAGCAGAGCATTTGGAGCT 59.183 47.619 0.00 0.00 46.82 4.09
6642 7361 1.174783 AAGCAGAGCATTTGGAGCTG 58.825 50.000 0.00 0.00 43.58 4.24
6643 7362 0.037877 AGCAGAGCATTTGGAGCTGT 59.962 50.000 0.00 0.00 43.58 4.40
6665 7384 0.883833 GTCAGCCACCATTGTTCAGG 59.116 55.000 0.00 0.00 0.00 3.86
6712 7431 5.238583 ACCTTCAACAGTATCTGCACTAAC 58.761 41.667 0.00 0.00 34.37 2.34
6766 7485 2.243774 ATCCTCCTCCTCGGCCTTGA 62.244 60.000 0.00 0.00 0.00 3.02
6831 7550 2.363018 TGGGAGAGCAGAGGGTCG 60.363 66.667 0.00 0.00 46.06 4.79
6834 7553 2.043852 GAGAGCAGAGGGTCGGGA 60.044 66.667 0.00 0.00 46.06 5.14
6840 7559 1.826024 CAGAGGGTCGGGAGAATGG 59.174 63.158 0.00 0.00 42.89 3.16
6846 7565 0.249489 GGTCGGGAGAATGGTCATCG 60.249 60.000 0.00 0.00 42.89 3.84
6879 7598 3.350833 GCCCATGATGTATGAGGATTCC 58.649 50.000 0.00 0.00 39.21 3.01
6897 7616 3.827817 TCCTCAAAGTAGGAGTCCTCA 57.172 47.619 17.09 0.00 40.86 3.86
6919 7638 5.072736 TCATCTTCATATGCCTCCTTGTCAT 59.927 40.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.027653 GGAGTATAGAGGATGCAAGGGC 60.028 54.545 0.00 0.00 41.68 5.19
1 2 3.242867 TGGAGTATAGAGGATGCAAGGG 58.757 50.000 0.00 0.00 0.00 3.95
3 4 5.537188 GAGTTGGAGTATAGAGGATGCAAG 58.463 45.833 0.00 0.00 0.00 4.01
4 5 4.038042 CGAGTTGGAGTATAGAGGATGCAA 59.962 45.833 0.00 0.00 0.00 4.08
6 7 3.612955 GCGAGTTGGAGTATAGAGGATGC 60.613 52.174 0.00 0.00 0.00 3.91
7 8 3.570125 TGCGAGTTGGAGTATAGAGGATG 59.430 47.826 0.00 0.00 0.00 3.51
8 9 3.570550 GTGCGAGTTGGAGTATAGAGGAT 59.429 47.826 0.00 0.00 0.00 3.24
9 10 2.950309 GTGCGAGTTGGAGTATAGAGGA 59.050 50.000 0.00 0.00 0.00 3.71
10 11 2.688446 TGTGCGAGTTGGAGTATAGAGG 59.312 50.000 0.00 0.00 0.00 3.69
11 12 3.378742 AGTGTGCGAGTTGGAGTATAGAG 59.621 47.826 0.00 0.00 0.00 2.43
12 13 3.353557 AGTGTGCGAGTTGGAGTATAGA 58.646 45.455 0.00 0.00 0.00 1.98
13 14 3.784701 AGTGTGCGAGTTGGAGTATAG 57.215 47.619 0.00 0.00 0.00 1.31
14 15 4.885325 TGATAGTGTGCGAGTTGGAGTATA 59.115 41.667 0.00 0.00 0.00 1.47
15 16 3.699538 TGATAGTGTGCGAGTTGGAGTAT 59.300 43.478 0.00 0.00 0.00 2.12
16 17 3.086282 TGATAGTGTGCGAGTTGGAGTA 58.914 45.455 0.00 0.00 0.00 2.59
17 18 1.893137 TGATAGTGTGCGAGTTGGAGT 59.107 47.619 0.00 0.00 0.00 3.85
18 19 2.654749 TGATAGTGTGCGAGTTGGAG 57.345 50.000 0.00 0.00 0.00 3.86
19 20 2.233676 ACATGATAGTGTGCGAGTTGGA 59.766 45.455 0.00 0.00 0.00 3.53
20 21 2.621338 ACATGATAGTGTGCGAGTTGG 58.379 47.619 0.00 0.00 0.00 3.77
21 22 4.761910 GTACATGATAGTGTGCGAGTTG 57.238 45.455 0.00 0.00 33.62 3.16
42 43 1.068748 ACTACCGTGACAACTAGTGCG 60.069 52.381 0.00 0.00 0.00 5.34
73 74 6.319405 AGGTACAAAATTACGTCAGGTTTGTT 59.681 34.615 18.59 5.10 41.37 2.83
82 83 6.634035 GGTGTGAAAAGGTACAAAATTACGTC 59.366 38.462 0.00 0.00 0.00 4.34
94 95 9.027202 AGTTTTCTTTAAAGGTGTGAAAAGGTA 57.973 29.630 15.13 0.00 37.32 3.08
96 97 9.297586 GTAGTTTTCTTTAAAGGTGTGAAAAGG 57.702 33.333 15.13 0.00 37.32 3.11
127 130 9.778741 TTTTGACATAATGACTTCAAGAGTACT 57.221 29.630 0.00 0.00 39.19 2.73
133 136 9.918630 AAATCCTTTTGACATAATGACTTCAAG 57.081 29.630 0.00 0.00 29.96 3.02
134 137 9.695526 CAAATCCTTTTGACATAATGACTTCAA 57.304 29.630 0.00 0.00 44.11 2.69
135 138 9.076781 TCAAATCCTTTTGACATAATGACTTCA 57.923 29.630 0.00 0.00 44.81 3.02
136 139 9.565213 CTCAAATCCTTTTGACATAATGACTTC 57.435 33.333 0.00 0.00 44.81 3.01
137 140 9.082313 ACTCAAATCCTTTTGACATAATGACTT 57.918 29.630 0.00 0.00 44.81 3.01
138 141 8.641498 ACTCAAATCCTTTTGACATAATGACT 57.359 30.769 0.00 0.00 44.81 3.41
139 142 9.994432 CTACTCAAATCCTTTTGACATAATGAC 57.006 33.333 0.00 0.00 44.81 3.06
140 143 9.177608 CCTACTCAAATCCTTTTGACATAATGA 57.822 33.333 0.00 0.00 44.81 2.57
141 144 8.960591 ACCTACTCAAATCCTTTTGACATAATG 58.039 33.333 0.00 0.00 44.81 1.90
142 145 9.533831 AACCTACTCAAATCCTTTTGACATAAT 57.466 29.630 0.00 0.00 44.81 1.28
143 146 8.934023 AACCTACTCAAATCCTTTTGACATAA 57.066 30.769 0.00 0.00 44.81 1.90
144 147 8.934023 AAACCTACTCAAATCCTTTTGACATA 57.066 30.769 0.00 0.00 44.81 2.29
145 148 7.839680 AAACCTACTCAAATCCTTTTGACAT 57.160 32.000 0.00 0.00 44.81 3.06
146 149 7.201875 GGAAAACCTACTCAAATCCTTTTGACA 60.202 37.037 0.00 0.00 44.81 3.58
147 150 7.014326 AGGAAAACCTACTCAAATCCTTTTGAC 59.986 37.037 0.00 0.00 44.81 3.18
148 151 7.066781 AGGAAAACCTACTCAAATCCTTTTGA 58.933 34.615 1.63 1.63 46.88 2.69
149 152 7.290110 AGGAAAACCTACTCAAATCCTTTTG 57.710 36.000 0.00 0.00 42.98 2.44
217 220 6.931281 ACCAATGTAATCCACTCTGAATATCG 59.069 38.462 0.00 0.00 0.00 2.92
225 228 5.248640 CAAGTCACCAATGTAATCCACTCT 58.751 41.667 0.00 0.00 0.00 3.24
238 241 4.892934 AGATTTAAGTTGGCAAGTCACCAA 59.107 37.500 8.24 0.00 44.86 3.67
294 297 6.928492 AGTGCGACAAACCATCAATAATTTTT 59.072 30.769 0.00 0.00 0.00 1.94
304 307 5.348986 TCTATTCTAGTGCGACAAACCATC 58.651 41.667 0.00 0.00 0.00 3.51
311 314 7.283354 CCTATATCCATCTATTCTAGTGCGACA 59.717 40.741 0.00 0.00 0.00 4.35
313 316 7.574607 TCCTATATCCATCTATTCTAGTGCGA 58.425 38.462 0.00 0.00 0.00 5.10
316 319 9.913310 TCACTCCTATATCCATCTATTCTAGTG 57.087 37.037 0.00 0.00 0.00 2.74
333 336 8.095452 ACTCCAATCTATTGTTTCACTCCTAT 57.905 34.615 2.25 0.00 36.06 2.57
334 337 7.180229 TGACTCCAATCTATTGTTTCACTCCTA 59.820 37.037 2.25 0.00 36.06 2.94
335 338 6.013379 TGACTCCAATCTATTGTTTCACTCCT 60.013 38.462 2.25 0.00 36.06 3.69
336 339 6.173339 TGACTCCAATCTATTGTTTCACTCC 58.827 40.000 2.25 0.00 36.06 3.85
337 340 7.201679 CCATGACTCCAATCTATTGTTTCACTC 60.202 40.741 0.00 0.00 36.06 3.51
339 342 6.375455 ACCATGACTCCAATCTATTGTTTCAC 59.625 38.462 0.00 0.00 36.06 3.18
340 343 6.484288 ACCATGACTCCAATCTATTGTTTCA 58.516 36.000 0.00 2.38 36.06 2.69
341 344 7.987458 TCTACCATGACTCCAATCTATTGTTTC 59.013 37.037 0.00 0.00 36.06 2.78
343 346 7.437713 TCTACCATGACTCCAATCTATTGTT 57.562 36.000 0.00 0.00 36.06 2.83
344 347 7.437713 TTCTACCATGACTCCAATCTATTGT 57.562 36.000 0.00 0.00 36.06 2.71
345 348 7.094890 GCATTCTACCATGACTCCAATCTATTG 60.095 40.741 0.00 0.00 37.52 1.90
346 349 6.939163 GCATTCTACCATGACTCCAATCTATT 59.061 38.462 0.00 0.00 0.00 1.73
347 350 6.471146 GCATTCTACCATGACTCCAATCTAT 58.529 40.000 0.00 0.00 0.00 1.98
348 351 5.221722 GGCATTCTACCATGACTCCAATCTA 60.222 44.000 0.00 0.00 0.00 1.98
351 369 3.745480 CGGCATTCTACCATGACTCCAAT 60.745 47.826 0.00 0.00 28.68 3.16
364 382 5.163663 GGTGATGTGAATTTTCGGCATTCTA 60.164 40.000 0.00 0.00 32.63 2.10
365 383 4.380867 GGTGATGTGAATTTTCGGCATTCT 60.381 41.667 0.00 0.00 32.63 2.40
371 389 3.758554 AGAAGGGTGATGTGAATTTTCGG 59.241 43.478 0.00 0.00 0.00 4.30
373 391 7.687941 TCTTAGAAGGGTGATGTGAATTTTC 57.312 36.000 0.00 0.00 0.00 2.29
381 399 6.506538 AGCAATATCTTAGAAGGGTGATGT 57.493 37.500 0.00 0.00 0.00 3.06
449 485 9.439500 ACCAAAGTATCTTAATAAGCGTAAACA 57.561 29.630 0.00 0.00 0.00 2.83
505 541 8.678199 TGCATTGGTTGTATTGACGATTAAATA 58.322 29.630 0.00 0.00 0.00 1.40
509 545 6.502136 TTGCATTGGTTGTATTGACGATTA 57.498 33.333 0.00 0.00 0.00 1.75
524 560 3.940319 TGATTTGTTGGGATTGCATTGG 58.060 40.909 0.00 0.00 0.00 3.16
526 562 5.374921 TGTTTGATTTGTTGGGATTGCATT 58.625 33.333 0.00 0.00 0.00 3.56
554 590 8.664798 CGAGGAAATGAACATTTGTATGTCTAA 58.335 33.333 15.92 0.00 44.14 2.10
579 615 4.142902 GGTCTACACCATTGATTGTTCACG 60.143 45.833 0.00 0.00 43.17 4.35
580 616 5.003804 AGGTCTACACCATTGATTGTTCAC 58.996 41.667 0.00 0.00 46.68 3.18
598 634 5.454329 GGACACAACCAACTTAGTTAGGTCT 60.454 44.000 15.67 7.27 33.43 3.85
601 637 4.070009 GGGACACAACCAACTTAGTTAGG 58.930 47.826 0.00 4.80 0.00 2.69
602 638 4.969484 AGGGACACAACCAACTTAGTTAG 58.031 43.478 0.00 0.00 0.00 2.34
616 653 6.121776 ACAATGTTTGATACTAGGGACACA 57.878 37.500 0.00 0.00 0.00 3.72
622 659 9.823647 AGTTCATCTACAATGTTTGATACTAGG 57.176 33.333 0.00 0.00 0.00 3.02
688 725 7.767198 TGTGATTCCCGTAAGTAAAAGAATAGG 59.233 37.037 0.00 0.00 0.00 2.57
689 726 8.712285 TGTGATTCCCGTAAGTAAAAGAATAG 57.288 34.615 0.00 0.00 0.00 1.73
691 728 7.989416 TTGTGATTCCCGTAAGTAAAAGAAT 57.011 32.000 0.00 0.00 0.00 2.40
695 732 7.396418 ACCTATTGTGATTCCCGTAAGTAAAA 58.604 34.615 0.00 0.00 0.00 1.52
696 733 6.949715 ACCTATTGTGATTCCCGTAAGTAAA 58.050 36.000 0.00 0.00 0.00 2.01
704 741 3.123804 CGAAGACCTATTGTGATTCCCG 58.876 50.000 0.00 0.00 0.00 5.14
713 750 2.200067 CAGCTGAGCGAAGACCTATTG 58.800 52.381 8.42 0.00 0.00 1.90
718 755 2.080286 TTTACAGCTGAGCGAAGACC 57.920 50.000 23.35 0.00 0.00 3.85
729 767 9.362539 CATAGCAATTTCAAGATTTTTACAGCT 57.637 29.630 0.00 0.00 0.00 4.24
739 777 7.893124 ATTCCACTCATAGCAATTTCAAGAT 57.107 32.000 0.00 0.00 0.00 2.40
741 779 7.816031 ACAAATTCCACTCATAGCAATTTCAAG 59.184 33.333 0.00 0.00 0.00 3.02
750 788 6.985188 TGAAGTACAAATTCCACTCATAGC 57.015 37.500 0.00 0.00 0.00 2.97
814 852 9.408648 CATTCACTAGGGTTTTCCAATATTACT 57.591 33.333 0.00 0.00 42.91 2.24
854 1111 5.397142 AGAGCCTTTCAAATTGATGGTTC 57.603 39.130 17.61 17.61 33.91 3.62
859 1116 9.211485 CAAACATAAAGAGCCTTTCAAATTGAT 57.789 29.630 0.00 0.00 0.00 2.57
861 1118 8.369218 ACAAACATAAAGAGCCTTTCAAATTG 57.631 30.769 3.80 8.20 0.00 2.32
866 1155 6.959639 AGAACAAACATAAAGAGCCTTTCA 57.040 33.333 3.80 0.00 0.00 2.69
867 1156 7.803659 GTGTAGAACAAACATAAAGAGCCTTTC 59.196 37.037 3.80 0.00 0.00 2.62
879 1168 2.548057 CACGCCTGTGTAGAACAAACAT 59.452 45.455 0.00 0.00 41.34 2.71
893 1182 2.821366 GGTCCAGATGCACGCCTG 60.821 66.667 0.00 0.00 0.00 4.85
895 1184 4.760047 ACGGTCCAGATGCACGCC 62.760 66.667 0.00 0.00 0.00 5.68
1089 1385 2.066999 GGCGGTGAGGGAGAGGAAT 61.067 63.158 0.00 0.00 0.00 3.01
1725 2030 2.391389 CGCCTTCTTCTTCGCCACC 61.391 63.158 0.00 0.00 0.00 4.61
1726 2031 2.391389 CCGCCTTCTTCTTCGCCAC 61.391 63.158 0.00 0.00 0.00 5.01
1727 2032 2.047274 CCGCCTTCTTCTTCGCCA 60.047 61.111 0.00 0.00 0.00 5.69
1901 2206 6.240145 TCATTCATCAATGTGGAAGAGAACA 58.760 36.000 0.00 0.00 40.47 3.18
1986 2352 5.914033 TGTGGGCTGCTAATTAGTACTTAG 58.086 41.667 13.91 0.00 0.00 2.18
1987 2353 5.943349 TGTGGGCTGCTAATTAGTACTTA 57.057 39.130 13.91 0.00 0.00 2.24
1988 2354 4.837093 TGTGGGCTGCTAATTAGTACTT 57.163 40.909 13.91 0.00 0.00 2.24
1989 2355 6.270000 TCATATGTGGGCTGCTAATTAGTACT 59.730 38.462 13.91 0.00 0.00 2.73
1990 2356 6.464222 TCATATGTGGGCTGCTAATTAGTAC 58.536 40.000 13.91 4.84 0.00 2.73
1991 2357 6.496911 TCTCATATGTGGGCTGCTAATTAGTA 59.503 38.462 13.91 8.65 0.00 1.82
1992 2358 5.307976 TCTCATATGTGGGCTGCTAATTAGT 59.692 40.000 13.91 0.00 0.00 2.24
2008 2374 5.356190 GGATTGGTGGTATGCATCTCATATG 59.644 44.000 0.19 0.00 39.63 1.78
2060 2428 4.907879 ATAAAGGCTGCAAGTAAGCATC 57.092 40.909 0.50 0.00 44.68 3.91
2086 2454 0.896923 TGCAAGATGGCCACCAATTC 59.103 50.000 8.16 0.00 36.95 2.17
2116 2484 9.425248 AATTCAAATGTACCACATCCATCTAAT 57.575 29.630 0.00 0.00 37.97 1.73
2147 2515 6.091577 CGTGAACCTGCAACTGTACATATAAA 59.908 38.462 0.00 0.00 0.00 1.40
2148 2516 5.579119 CGTGAACCTGCAACTGTACATATAA 59.421 40.000 0.00 0.00 0.00 0.98
2149 2517 5.105675 TCGTGAACCTGCAACTGTACATATA 60.106 40.000 0.00 0.00 0.00 0.86
2150 2518 3.932710 CGTGAACCTGCAACTGTACATAT 59.067 43.478 0.00 0.00 0.00 1.78
2151 2519 3.006003 TCGTGAACCTGCAACTGTACATA 59.994 43.478 0.00 0.00 0.00 2.29
2152 2520 2.143122 CGTGAACCTGCAACTGTACAT 58.857 47.619 0.00 0.00 0.00 2.29
2153 2521 1.137282 TCGTGAACCTGCAACTGTACA 59.863 47.619 0.00 0.00 0.00 2.90
2154 2522 1.860676 TCGTGAACCTGCAACTGTAC 58.139 50.000 0.00 0.00 0.00 2.90
2155 2523 2.159014 AGTTCGTGAACCTGCAACTGTA 60.159 45.455 9.03 0.00 42.06 2.74
2156 2524 1.014352 GTTCGTGAACCTGCAACTGT 58.986 50.000 1.21 0.00 35.36 3.55
2157 2525 1.299541 AGTTCGTGAACCTGCAACTG 58.700 50.000 9.03 0.00 42.06 3.16
2158 2526 2.038387 AAGTTCGTGAACCTGCAACT 57.962 45.000 9.03 0.00 42.06 3.16
2159 2527 2.844122 AAAGTTCGTGAACCTGCAAC 57.156 45.000 9.03 0.00 42.06 4.17
2160 2528 2.098443 GGAAAAGTTCGTGAACCTGCAA 59.902 45.455 9.03 0.00 42.06 4.08
2161 2529 1.673920 GGAAAAGTTCGTGAACCTGCA 59.326 47.619 9.03 0.00 42.06 4.41
2162 2530 1.673920 TGGAAAAGTTCGTGAACCTGC 59.326 47.619 9.03 1.32 42.06 4.85
2163 2531 4.568152 AATGGAAAAGTTCGTGAACCTG 57.432 40.909 9.03 0.00 42.06 4.00
2164 2532 5.008316 GTGTAATGGAAAAGTTCGTGAACCT 59.992 40.000 9.03 0.00 42.06 3.50
2165 2533 5.209977 GTGTAATGGAAAAGTTCGTGAACC 58.790 41.667 9.03 0.00 42.06 3.62
2166 2534 4.901881 CGTGTAATGGAAAAGTTCGTGAAC 59.098 41.667 4.58 4.58 41.45 3.18
2167 2535 5.085636 CGTGTAATGGAAAAGTTCGTGAA 57.914 39.130 0.00 0.00 0.00 3.18
2168 2536 4.718858 CGTGTAATGGAAAAGTTCGTGA 57.281 40.909 0.00 0.00 0.00 4.35
2181 2549 4.560128 CTCCATATCAGGACCGTGTAATG 58.440 47.826 0.00 0.00 33.19 1.90
2182 2550 3.578716 CCTCCATATCAGGACCGTGTAAT 59.421 47.826 0.00 0.00 33.19 1.89
2183 2551 2.963101 CCTCCATATCAGGACCGTGTAA 59.037 50.000 0.00 0.00 33.19 2.41
2184 2552 2.091499 ACCTCCATATCAGGACCGTGTA 60.091 50.000 4.47 0.00 34.75 2.90
2185 2553 1.343075 ACCTCCATATCAGGACCGTGT 60.343 52.381 4.47 0.00 34.75 4.49
2186 2554 1.414158 ACCTCCATATCAGGACCGTG 58.586 55.000 4.47 0.00 34.75 4.94
2187 2555 2.445905 TCTACCTCCATATCAGGACCGT 59.554 50.000 4.47 0.00 34.75 4.83
2188 2556 3.156288 TCTACCTCCATATCAGGACCG 57.844 52.381 4.47 0.00 34.75 4.79
2189 2557 6.954684 TCTAAATCTACCTCCATATCAGGACC 59.045 42.308 4.47 0.00 34.75 4.46
2190 2558 8.602472 ATCTAAATCTACCTCCATATCAGGAC 57.398 38.462 4.47 0.00 34.75 3.85
2191 2559 9.621239 AAATCTAAATCTACCTCCATATCAGGA 57.379 33.333 4.47 0.00 34.75 3.86
2192 2560 9.664332 CAAATCTAAATCTACCTCCATATCAGG 57.336 37.037 0.00 0.00 37.03 3.86
2193 2561 9.664332 CCAAATCTAAATCTACCTCCATATCAG 57.336 37.037 0.00 0.00 0.00 2.90
2194 2562 8.103305 GCCAAATCTAAATCTACCTCCATATCA 58.897 37.037 0.00 0.00 0.00 2.15
2195 2563 8.103305 TGCCAAATCTAAATCTACCTCCATATC 58.897 37.037 0.00 0.00 0.00 1.63
2196 2564 7.988937 TGCCAAATCTAAATCTACCTCCATAT 58.011 34.615 0.00 0.00 0.00 1.78
2197 2565 7.387265 TGCCAAATCTAAATCTACCTCCATA 57.613 36.000 0.00 0.00 0.00 2.74
2198 2566 6.266131 TGCCAAATCTAAATCTACCTCCAT 57.734 37.500 0.00 0.00 0.00 3.41
2199 2567 5.708736 TGCCAAATCTAAATCTACCTCCA 57.291 39.130 0.00 0.00 0.00 3.86
2200 2568 7.588497 AAATGCCAAATCTAAATCTACCTCC 57.412 36.000 0.00 0.00 0.00 4.30
2201 2569 8.686334 TCAAAATGCCAAATCTAAATCTACCTC 58.314 33.333 0.00 0.00 0.00 3.85
2202 2570 8.593945 TCAAAATGCCAAATCTAAATCTACCT 57.406 30.769 0.00 0.00 0.00 3.08
2203 2571 9.822185 ATTCAAAATGCCAAATCTAAATCTACC 57.178 29.630 0.00 0.00 0.00 3.18
2206 2574 8.542080 TGGATTCAAAATGCCAAATCTAAATCT 58.458 29.630 0.00 0.00 0.00 2.40
2207 2575 8.606602 GTGGATTCAAAATGCCAAATCTAAATC 58.393 33.333 0.00 0.00 31.18 2.17
2208 2576 7.553760 GGTGGATTCAAAATGCCAAATCTAAAT 59.446 33.333 0.00 0.00 31.18 1.40
2209 2577 6.878389 GGTGGATTCAAAATGCCAAATCTAAA 59.122 34.615 0.00 0.00 31.18 1.85
2210 2578 6.213195 AGGTGGATTCAAAATGCCAAATCTAA 59.787 34.615 0.00 0.00 31.18 2.10
2211 2579 5.721000 AGGTGGATTCAAAATGCCAAATCTA 59.279 36.000 0.00 0.00 31.18 1.98
2212 2580 4.533311 AGGTGGATTCAAAATGCCAAATCT 59.467 37.500 0.00 0.00 31.18 2.40
2213 2581 4.835678 AGGTGGATTCAAAATGCCAAATC 58.164 39.130 0.00 0.00 31.18 2.17
2214 2582 4.914177 AGGTGGATTCAAAATGCCAAAT 57.086 36.364 0.00 0.00 31.18 2.32
2215 2583 4.703379 AAGGTGGATTCAAAATGCCAAA 57.297 36.364 0.00 0.00 31.18 3.28
2216 2584 4.102210 TCAAAGGTGGATTCAAAATGCCAA 59.898 37.500 0.00 0.00 31.18 4.52
2217 2585 3.645212 TCAAAGGTGGATTCAAAATGCCA 59.355 39.130 0.00 0.00 0.00 4.92
2218 2586 4.270245 TCAAAGGTGGATTCAAAATGCC 57.730 40.909 0.00 0.00 0.00 4.40
2219 2587 5.240121 ACATCAAAGGTGGATTCAAAATGC 58.760 37.500 0.00 0.00 0.00 3.56
2220 2588 7.829725 TCTACATCAAAGGTGGATTCAAAATG 58.170 34.615 0.00 0.00 0.00 2.32
2221 2589 8.599624 ATCTACATCAAAGGTGGATTCAAAAT 57.400 30.769 0.00 0.00 33.33 1.82
2222 2590 8.956426 GTATCTACATCAAAGGTGGATTCAAAA 58.044 33.333 0.00 0.00 37.58 2.44
2223 2591 8.106462 TGTATCTACATCAAAGGTGGATTCAAA 58.894 33.333 0.00 0.00 37.58 2.69
2224 2592 7.629157 TGTATCTACATCAAAGGTGGATTCAA 58.371 34.615 0.00 0.00 37.58 2.69
2225 2593 7.092891 ACTGTATCTACATCAAAGGTGGATTCA 60.093 37.037 0.00 0.00 37.58 2.57
2226 2594 7.275920 ACTGTATCTACATCAAAGGTGGATTC 58.724 38.462 0.00 0.00 37.58 2.52
2227 2595 7.200434 ACTGTATCTACATCAAAGGTGGATT 57.800 36.000 0.00 0.00 37.58 3.01
2228 2596 6.814954 ACTGTATCTACATCAAAGGTGGAT 57.185 37.500 0.00 0.00 39.41 3.41
2229 2597 7.344612 ACATACTGTATCTACATCAAAGGTGGA 59.655 37.037 0.00 0.00 35.36 4.02
2230 2598 7.439356 CACATACTGTATCTACATCAAAGGTGG 59.561 40.741 0.00 0.00 35.36 4.61
2231 2599 7.981789 ACACATACTGTATCTACATCAAAGGTG 59.018 37.037 0.00 1.88 35.36 4.00
2232 2600 8.079211 ACACATACTGTATCTACATCAAAGGT 57.921 34.615 0.00 0.00 35.36 3.50
2237 2605 9.476202 GCATTTACACATACTGTATCTACATCA 57.524 33.333 0.00 0.00 35.18 3.07
2238 2606 9.698309 AGCATTTACACATACTGTATCTACATC 57.302 33.333 0.00 0.00 35.18 3.06
2245 2613 8.612619 GCAAGTAAGCATTTACACATACTGTAT 58.387 33.333 0.00 0.00 41.33 2.29
2246 2614 7.604545 TGCAAGTAAGCATTTACACATACTGTA 59.395 33.333 0.00 0.00 41.33 2.74
2247 2615 6.429692 TGCAAGTAAGCATTTACACATACTGT 59.570 34.615 0.00 0.00 41.33 3.55
2248 2616 6.841119 TGCAAGTAAGCATTTACACATACTG 58.159 36.000 0.00 0.00 41.33 2.74
2249 2617 6.403636 GCTGCAAGTAAGCATTTACACATACT 60.404 38.462 0.00 0.00 44.68 2.12
2250 2618 5.739161 GCTGCAAGTAAGCATTTACACATAC 59.261 40.000 0.00 0.00 44.68 2.39
2251 2619 5.163663 GGCTGCAAGTAAGCATTTACACATA 60.164 40.000 0.50 0.00 44.68 2.29
2252 2620 4.380867 GGCTGCAAGTAAGCATTTACACAT 60.381 41.667 0.50 0.00 44.68 3.21
2253 2621 3.057596 GGCTGCAAGTAAGCATTTACACA 60.058 43.478 0.50 0.00 44.68 3.72
2254 2622 3.191371 AGGCTGCAAGTAAGCATTTACAC 59.809 43.478 0.50 0.00 44.68 2.90
2255 2623 3.420893 AGGCTGCAAGTAAGCATTTACA 58.579 40.909 0.50 0.00 44.68 2.41
2256 2624 4.440839 AAGGCTGCAAGTAAGCATTTAC 57.559 40.909 0.50 0.00 41.53 2.01
2259 2627 5.665916 AATAAAGGCTGCAAGTAAGCATT 57.334 34.783 0.50 0.00 45.81 3.56
2260 2628 5.665916 AAATAAAGGCTGCAAGTAAGCAT 57.334 34.783 0.50 0.00 44.68 3.79
2261 2629 5.467035 AAAATAAAGGCTGCAAGTAAGCA 57.533 34.783 0.50 0.00 42.69 3.91
2262 2630 6.852664 TCTAAAATAAAGGCTGCAAGTAAGC 58.147 36.000 0.50 0.00 40.06 3.09
2263 2631 9.860898 AATTCTAAAATAAAGGCTGCAAGTAAG 57.139 29.630 0.50 0.00 35.30 2.34
2264 2632 9.638239 CAATTCTAAAATAAAGGCTGCAAGTAA 57.362 29.630 0.50 0.00 35.30 2.24
2265 2633 8.250332 CCAATTCTAAAATAAAGGCTGCAAGTA 58.750 33.333 0.50 0.00 35.30 2.24
2266 2634 7.099120 CCAATTCTAAAATAAAGGCTGCAAGT 58.901 34.615 0.50 0.00 35.30 3.16
2267 2635 7.063780 CACCAATTCTAAAATAAAGGCTGCAAG 59.936 37.037 0.50 0.00 0.00 4.01
2268 2636 6.873076 CACCAATTCTAAAATAAAGGCTGCAA 59.127 34.615 0.50 0.00 0.00 4.08
2269 2637 6.397272 CACCAATTCTAAAATAAAGGCTGCA 58.603 36.000 0.50 0.00 0.00 4.41
2270 2638 5.812127 CCACCAATTCTAAAATAAAGGCTGC 59.188 40.000 0.00 0.00 0.00 5.25
2271 2639 5.812127 GCCACCAATTCTAAAATAAAGGCTG 59.188 40.000 0.00 0.00 34.59 4.85
2272 2640 5.104941 GGCCACCAATTCTAAAATAAAGGCT 60.105 40.000 0.00 0.00 37.42 4.58
2273 2641 5.116180 GGCCACCAATTCTAAAATAAAGGC 58.884 41.667 0.00 0.00 36.57 4.35
2274 2642 6.293004 TGGCCACCAATTCTAAAATAAAGG 57.707 37.500 0.00 0.00 0.00 3.11
2275 2643 7.785033 AGATGGCCACCAATTCTAAAATAAAG 58.215 34.615 8.16 0.00 36.95 1.85
2276 2644 7.732222 AGATGGCCACCAATTCTAAAATAAA 57.268 32.000 8.16 0.00 36.95 1.40
2277 2645 7.555087 CAAGATGGCCACCAATTCTAAAATAA 58.445 34.615 8.16 0.00 36.95 1.40
2278 2646 6.406849 GCAAGATGGCCACCAATTCTAAAATA 60.407 38.462 8.16 0.00 36.95 1.40
2279 2647 5.627503 GCAAGATGGCCACCAATTCTAAAAT 60.628 40.000 8.16 0.00 36.95 1.82
2280 2648 4.322650 GCAAGATGGCCACCAATTCTAAAA 60.323 41.667 8.16 0.00 36.95 1.52
2281 2649 3.195396 GCAAGATGGCCACCAATTCTAAA 59.805 43.478 8.16 0.00 36.95 1.85
2282 2650 2.760092 GCAAGATGGCCACCAATTCTAA 59.240 45.455 8.16 0.00 36.95 2.10
2283 2651 2.291475 TGCAAGATGGCCACCAATTCTA 60.291 45.455 8.16 0.00 36.95 2.10
2284 2652 1.188863 GCAAGATGGCCACCAATTCT 58.811 50.000 8.16 3.04 36.95 2.40
2285 2653 0.896923 TGCAAGATGGCCACCAATTC 59.103 50.000 8.16 0.00 36.95 2.17
2286 2654 0.899720 CTGCAAGATGGCCACCAATT 59.100 50.000 8.16 0.00 36.95 2.32
2287 2655 0.040058 TCTGCAAGATGGCCACCAAT 59.960 50.000 8.16 0.00 38.67 3.16
2288 2656 0.178967 TTCTGCAAGATGGCCACCAA 60.179 50.000 8.16 0.00 46.36 3.67
2289 2657 0.040058 ATTCTGCAAGATGGCCACCA 59.960 50.000 8.16 0.00 46.36 4.17
2290 2658 0.458669 CATTCTGCAAGATGGCCACC 59.541 55.000 8.16 0.00 46.36 4.61
2291 2659 0.458669 CCATTCTGCAAGATGGCCAC 59.541 55.000 8.16 1.58 46.36 5.01
2292 2660 0.685131 CCCATTCTGCAAGATGGCCA 60.685 55.000 8.56 8.56 46.36 5.36
2293 2661 0.685458 ACCCATTCTGCAAGATGGCC 60.685 55.000 18.27 0.00 46.36 5.36
2294 2662 0.458669 CACCCATTCTGCAAGATGGC 59.541 55.000 18.27 0.00 46.36 4.40
2295 2663 1.108776 CCACCCATTCTGCAAGATGG 58.891 55.000 17.21 17.21 46.36 3.51
2296 2664 1.108776 CCCACCCATTCTGCAAGATG 58.891 55.000 0.00 0.00 46.36 2.90
2297 2665 0.706433 ACCCACCCATTCTGCAAGAT 59.294 50.000 0.00 0.00 46.36 2.40
2298 2666 0.482446 AACCCACCCATTCTGCAAGA 59.518 50.000 0.00 0.00 44.68 3.02
2299 2667 2.094675 CTAACCCACCCATTCTGCAAG 58.905 52.381 0.00 0.00 0.00 4.01
2300 2668 1.707989 TCTAACCCACCCATTCTGCAA 59.292 47.619 0.00 0.00 0.00 4.08
2301 2669 1.367346 TCTAACCCACCCATTCTGCA 58.633 50.000 0.00 0.00 0.00 4.41
2302 2670 2.301346 CATCTAACCCACCCATTCTGC 58.699 52.381 0.00 0.00 0.00 4.26
2303 2671 2.509548 TCCATCTAACCCACCCATTCTG 59.490 50.000 0.00 0.00 0.00 3.02
2304 2672 2.858644 TCCATCTAACCCACCCATTCT 58.141 47.619 0.00 0.00 0.00 2.40
2305 2673 3.490348 CATCCATCTAACCCACCCATTC 58.510 50.000 0.00 0.00 0.00 2.67
2306 2674 2.424812 GCATCCATCTAACCCACCCATT 60.425 50.000 0.00 0.00 0.00 3.16
2307 2675 1.145738 GCATCCATCTAACCCACCCAT 59.854 52.381 0.00 0.00 0.00 4.00
2308 2676 0.550914 GCATCCATCTAACCCACCCA 59.449 55.000 0.00 0.00 0.00 4.51
2309 2677 0.846693 AGCATCCATCTAACCCACCC 59.153 55.000 0.00 0.00 0.00 4.61
2310 2678 1.212935 ACAGCATCCATCTAACCCACC 59.787 52.381 0.00 0.00 0.00 4.61
2311 2679 2.717639 ACAGCATCCATCTAACCCAC 57.282 50.000 0.00 0.00 0.00 4.61
2312 2680 7.995052 ATATATACAGCATCCATCTAACCCA 57.005 36.000 0.00 0.00 0.00 4.51
2313 2681 8.368668 GGTATATATACAGCATCCATCTAACCC 58.631 40.741 21.56 0.00 34.98 4.11
2314 2682 8.924303 TGGTATATATACAGCATCCATCTAACC 58.076 37.037 21.56 4.60 34.98 2.85
2318 2686 8.996655 ACAATGGTATATATACAGCATCCATCT 58.003 33.333 21.56 6.15 34.01 2.90
2321 2689 8.704668 CCTACAATGGTATATATACAGCATCCA 58.295 37.037 21.56 11.43 34.98 3.41
2322 2690 8.705594 ACCTACAATGGTATATATACAGCATCC 58.294 37.037 21.56 6.55 38.79 3.51
2325 2693 9.095700 TGAACCTACAATGGTATATATACAGCA 57.904 33.333 21.56 13.01 39.83 4.41
2326 2694 9.367444 GTGAACCTACAATGGTATATATACAGC 57.633 37.037 21.56 8.31 39.83 4.40
2335 2703 7.833285 AAAGTTTGTGAACCTACAATGGTAT 57.167 32.000 0.00 0.00 40.00 2.73
2344 2712 8.723311 CATATTACGGAAAAGTTTGTGAACCTA 58.277 33.333 0.00 0.00 36.39 3.08
2363 2731 6.948886 TGGACTCTAGATCAGGACCATATTAC 59.051 42.308 0.00 0.00 0.00 1.89
2386 2754 7.649306 GCCAAATCTAAACTACATAAAGCATGG 59.351 37.037 0.00 0.00 39.13 3.66
2422 2790 7.928307 ATGTACTCACATAAGCAATTCAGTT 57.072 32.000 0.00 0.00 43.74 3.16
2428 2796 9.830975 TGTAATGTATGTACTCACATAAGCAAT 57.169 29.630 11.67 1.31 46.60 3.56
2535 2905 4.926238 AGTAGAAAGACAAGTTCAGCATCG 59.074 41.667 0.00 0.00 0.00 3.84
2565 2935 8.757164 ATTCCGTAAAAAGACAAATTCCATTC 57.243 30.769 0.00 0.00 0.00 2.67
2572 2942 6.266786 ACCCTGAATTCCGTAAAAAGACAAAT 59.733 34.615 2.27 0.00 0.00 2.32
2698 3069 4.081365 TCGAAGCTACCATAAACATGTGGA 60.081 41.667 0.00 0.00 38.86 4.02
2934 3310 6.211384 TGTCATCAGTCCAGTTCTTCAGAATA 59.789 38.462 0.00 0.00 36.33 1.75
2967 3344 2.235898 AGGCTTTAAGTGCAGGAGAGAG 59.764 50.000 0.00 0.00 0.00 3.20
2981 3358 6.707440 TTGAGTTCACAAAATGAGGCTTTA 57.293 33.333 0.00 0.00 38.99 1.85
2982 3359 5.596836 TTGAGTTCACAAAATGAGGCTTT 57.403 34.783 0.00 0.00 38.99 3.51
2983 3360 5.594926 CTTTGAGTTCACAAAATGAGGCTT 58.405 37.500 0.00 0.00 38.99 4.35
2984 3361 4.500375 GCTTTGAGTTCACAAAATGAGGCT 60.500 41.667 0.00 0.00 38.99 4.58
2985 3362 3.737774 GCTTTGAGTTCACAAAATGAGGC 59.262 43.478 0.00 0.00 38.99 4.70
2986 3363 4.038402 AGGCTTTGAGTTCACAAAATGAGG 59.962 41.667 0.00 0.00 38.99 3.86
2987 3364 5.192327 AGGCTTTGAGTTCACAAAATGAG 57.808 39.130 0.00 0.00 38.99 2.90
2988 3365 6.899393 ATAGGCTTTGAGTTCACAAAATGA 57.101 33.333 0.00 0.00 38.90 2.57
3002 3379 5.964958 TTTGAGTCAGGAAATAGGCTTTG 57.035 39.130 0.00 0.00 0.00 2.77
3289 3722 5.590259 GCATATCTACATTCCAGTTTGGTGT 59.410 40.000 0.00 0.00 39.03 4.16
3342 3779 7.011482 GTCATATCAGTCAACAAGGTAATCACC 59.989 40.741 0.00 0.00 46.19 4.02
3466 3903 3.623060 ACACACTGTGATTTCTGTGACAC 59.377 43.478 16.30 0.00 39.43 3.67
3506 3967 1.111277 GTGGTTGCACCTCAAACCTT 58.889 50.000 4.70 0.00 41.68 3.50
3522 3983 6.791371 TCTATGAGTAGACCTATAAGGGTGG 58.209 44.000 0.00 0.00 40.58 4.61
3524 3985 8.059565 AGTTCTATGAGTAGACCTATAAGGGT 57.940 38.462 0.00 0.00 40.58 4.34
3525 3986 8.798402 CAAGTTCTATGAGTAGACCTATAAGGG 58.202 40.741 0.00 0.00 40.58 3.95
3528 3989 9.352191 GACCAAGTTCTATGAGTAGACCTATAA 57.648 37.037 0.00 0.00 36.69 0.98
3531 3992 5.821470 CGACCAAGTTCTATGAGTAGACCTA 59.179 44.000 0.00 0.00 36.69 3.08
3532 3993 4.641094 CGACCAAGTTCTATGAGTAGACCT 59.359 45.833 0.00 0.00 36.69 3.85
3534 3995 4.398673 ACCGACCAAGTTCTATGAGTAGAC 59.601 45.833 0.00 0.00 36.69 2.59
3535 3996 4.597004 ACCGACCAAGTTCTATGAGTAGA 58.403 43.478 0.00 0.00 35.17 2.59
3536 3997 4.985538 ACCGACCAAGTTCTATGAGTAG 57.014 45.455 0.00 0.00 0.00 2.57
3537 3998 4.768448 TCAACCGACCAAGTTCTATGAGTA 59.232 41.667 0.00 0.00 0.00 2.59
3539 4000 4.177026 CTCAACCGACCAAGTTCTATGAG 58.823 47.826 0.00 0.00 0.00 2.90
3576 4037 9.759259 CATGTATACTTTGTATGGCATTATTCG 57.241 33.333 4.78 0.00 0.00 3.34
3603 4064 9.862371 CATACATGTAGAGTAAGTTCAGAAGTT 57.138 33.333 11.91 8.34 0.00 2.66
3629 4090 9.305925 ACAGAAAATGAATTTGAACTTCAAGAC 57.694 29.630 2.06 2.23 37.70 3.01
3868 4329 2.363359 CAAATCTTCAGGGCCCAATAGC 59.637 50.000 27.56 0.00 0.00 2.97
4197 4659 8.794553 CAGTATAGAAGGGTATAGTGTACCTTG 58.205 40.741 14.98 0.00 43.03 3.61
4211 4673 9.057089 GTAAACAATGGATTCAGTATAGAAGGG 57.943 37.037 0.00 0.00 0.00 3.95
4216 4678 9.838339 AAGGAGTAAACAATGGATTCAGTATAG 57.162 33.333 0.00 0.00 0.00 1.31
4339 4801 2.161410 TGTTATGCAAATGAGGCGTGAC 59.839 45.455 0.00 0.00 37.31 3.67
4369 4831 1.810959 TTCCCCCATAAACACGAACG 58.189 50.000 0.00 0.00 0.00 3.95
4461 4928 4.460263 TCCTTGTCATTGTTTACAGCAGT 58.540 39.130 0.00 0.00 0.00 4.40
4472 4939 5.243730 ACCCAATTACAACTCCTTGTCATTG 59.756 40.000 11.19 11.19 44.57 2.82
4480 4947 5.530176 AACCATACCCAATTACAACTCCT 57.470 39.130 0.00 0.00 0.00 3.69
4482 4949 7.662897 TCAAAAACCATACCCAATTACAACTC 58.337 34.615 0.00 0.00 0.00 3.01
4512 4979 0.890683 AAGTGTGCAAATGGCTAGCC 59.109 50.000 27.71 27.71 45.15 3.93
4514 4981 2.553602 TCACAAGTGTGCAAATGGCTAG 59.446 45.455 6.56 0.00 45.25 3.42
4515 4982 2.580962 TCACAAGTGTGCAAATGGCTA 58.419 42.857 6.56 0.00 45.25 3.93
4516 4983 1.401761 TCACAAGTGTGCAAATGGCT 58.598 45.000 6.56 0.00 45.25 4.75
4517 4984 2.443887 ATCACAAGTGTGCAAATGGC 57.556 45.000 6.56 0.00 45.25 4.40
4518 4985 4.869215 TGTAATCACAAGTGTGCAAATGG 58.131 39.130 6.56 0.00 45.25 3.16
4519 4986 8.692110 ATAATGTAATCACAAGTGTGCAAATG 57.308 30.769 6.56 0.00 45.25 2.32
4520 4987 8.742777 AGATAATGTAATCACAAGTGTGCAAAT 58.257 29.630 6.56 0.00 45.25 2.32
4521 4988 8.109705 AGATAATGTAATCACAAGTGTGCAAA 57.890 30.769 6.56 0.00 45.25 3.68
4522 4989 7.686438 AGATAATGTAATCACAAGTGTGCAA 57.314 32.000 6.56 0.00 45.25 4.08
4578 5053 0.036732 TCTTGCTTGGCCGAGAACAT 59.963 50.000 25.25 0.00 0.00 2.71
4579 5054 0.603707 CTCTTGCTTGGCCGAGAACA 60.604 55.000 25.25 10.27 30.35 3.18
4643 5121 9.921637 TTAAAAATTCTATTGTCCCAACATCAC 57.078 29.630 0.00 0.00 34.73 3.06
4718 5197 1.816074 TGGTTGGTTGATAAGCGGTC 58.184 50.000 0.00 0.00 0.00 4.79
4745 5224 8.859517 TGCAAAAACACAAGTTATAAACCTAC 57.140 30.769 0.00 0.00 36.84 3.18
4752 5231 9.755804 TGATCAATTGCAAAAACACAAGTTATA 57.244 25.926 1.71 0.00 36.84 0.98
5088 5568 1.301677 GAGCTTTCCCCAAGTCTGCG 61.302 60.000 0.00 0.00 34.56 5.18
5106 5586 3.154710 TGTTAGAGCAGACCTTCGAAGA 58.845 45.455 26.61 0.00 0.00 2.87
5125 5605 8.345565 CAAAACAAAGCTCTACTACAAGAATGT 58.654 33.333 0.00 0.00 43.74 2.71
5126 5606 8.345565 ACAAAACAAAGCTCTACTACAAGAATG 58.654 33.333 0.00 0.00 0.00 2.67
5160 5641 3.812262 TCATGTGGCACATAGAGGAATG 58.188 45.455 30.96 18.45 44.52 2.67
5175 5656 9.368674 TGGCATTTTATTCAGTTAAATCATGTG 57.631 29.630 0.00 0.00 0.00 3.21
5226 5707 6.773976 ACACAATCTTCTTTTTGAGAACCA 57.226 33.333 0.00 0.00 39.44 3.67
5251 5732 3.804325 ACATGATATCTGCACGCACTTAC 59.196 43.478 0.00 0.00 0.00 2.34
5258 5749 5.991328 AAAGGTAACATGATATCTGCACG 57.009 39.130 0.00 0.00 41.41 5.34
5304 5796 2.220653 TTCATTGGGGGAGAAAGCAG 57.779 50.000 0.00 0.00 0.00 4.24
5317 5809 7.383029 ACTTGTTGAACATGCTAACATTCATTG 59.617 33.333 10.66 0.00 34.63 2.82
5323 5815 7.329226 GCAAATACTTGTTGAACATGCTAACAT 59.671 33.333 10.95 1.57 34.63 2.71
5326 5818 6.743110 TGCAAATACTTGTTGAACATGCTAA 58.257 32.000 16.99 3.37 34.79 3.09
5335 5832 8.575589 AGTTCAATACATGCAAATACTTGTTGA 58.424 29.630 0.00 0.00 34.79 3.18
5549 6050 2.251338 AGAGGTGGAGATATCCAAGGGT 59.749 50.000 11.47 0.00 42.10 4.34
5582 6083 8.400947 ACACATTAGATTTAGTCATCACAATGC 58.599 33.333 0.00 0.00 34.38 3.56
5890 6482 3.625313 TGATTTGTTCTTGCAGTTCGTCA 59.375 39.130 0.00 0.00 0.00 4.35
5973 6565 1.071471 ACCACGACCTTGCTGGAAG 59.929 57.895 1.46 1.46 39.71 3.46
5996 6617 1.270305 CCATACCACTGTATCAGCGGG 60.270 57.143 8.37 7.40 37.94 6.13
6018 6639 7.707624 ACAAATGAATTCCTGATTCTAGCAA 57.292 32.000 2.27 0.00 43.74 3.91
6020 6641 8.992835 AAAACAAATGAATTCCTGATTCTAGC 57.007 30.769 2.27 0.00 43.74 3.42
6023 6644 8.314021 GGGTAAAACAAATGAATTCCTGATTCT 58.686 33.333 2.27 0.00 43.74 2.40
6044 6700 4.464951 ACAGTCATACATCGTTCAGGGTAA 59.535 41.667 0.00 0.00 0.00 2.85
6045 6701 4.021229 ACAGTCATACATCGTTCAGGGTA 58.979 43.478 0.00 0.00 0.00 3.69
6104 6761 4.756135 ACAATTTTGCAAAACATAGGGCTG 59.244 37.500 26.05 14.40 0.00 4.85
6128 6785 0.895530 ACATCACGAGTGGATCCGTT 59.104 50.000 7.39 0.00 36.83 4.44
6135 6792 1.107114 AGGAGCTACATCACGAGTGG 58.893 55.000 0.00 0.00 0.00 4.00
6138 6795 1.800655 GCACAGGAGCTACATCACGAG 60.801 57.143 0.00 0.00 0.00 4.18
6153 6811 0.860533 CACCAAAATTTGCGGCACAG 59.139 50.000 0.05 0.00 0.00 3.66
6155 6813 0.858583 GACACCAAAATTTGCGGCAC 59.141 50.000 0.05 0.00 0.00 5.01
6205 6866 7.796958 AAACTTTCTCAACAAAGAAGAAACG 57.203 32.000 0.02 0.00 36.66 3.60
6253 6956 1.688197 ACACTCACCCTTTTGCATTGG 59.312 47.619 0.00 0.00 0.00 3.16
6254 6957 2.624838 AGACACTCACCCTTTTGCATTG 59.375 45.455 0.00 0.00 0.00 2.82
6265 6968 3.434641 CACATGATTGACAGACACTCACC 59.565 47.826 0.00 0.00 40.11 4.02
6284 6987 2.771943 ACCAGTTGGACTCTTCTTCACA 59.228 45.455 4.92 0.00 38.94 3.58
6285 6988 3.477210 ACCAGTTGGACTCTTCTTCAC 57.523 47.619 4.92 0.00 38.94 3.18
6287 6990 4.709250 AGAAACCAGTTGGACTCTTCTTC 58.291 43.478 4.92 0.00 38.94 2.87
6350 7067 4.340381 CCTGAATTGACCAATCTTGATCCC 59.660 45.833 0.00 0.00 0.00 3.85
6375 7092 3.778265 ACACCTGCAACCTTGGATTATT 58.222 40.909 0.00 0.00 0.00 1.40
6376 7093 3.456380 ACACCTGCAACCTTGGATTAT 57.544 42.857 0.00 0.00 0.00 1.28
6377 7094 2.969821 ACACCTGCAACCTTGGATTA 57.030 45.000 0.00 0.00 0.00 1.75
6378 7095 2.158534 TGTACACCTGCAACCTTGGATT 60.159 45.455 0.00 0.00 0.00 3.01
6408 7125 3.552068 CCGTTTTTGTTGAGATTGACCCC 60.552 47.826 0.00 0.00 0.00 4.95
6428 7145 1.293924 GATCTCTTGGATGTGTGCCG 58.706 55.000 0.00 0.00 34.33 5.69
6434 7153 3.370315 GCTGTTCAGGATCTCTTGGATGT 60.370 47.826 1.97 0.00 34.33 3.06
6435 7154 3.204526 GCTGTTCAGGATCTCTTGGATG 58.795 50.000 1.97 0.00 34.33 3.51
6436 7155 2.172293 GGCTGTTCAGGATCTCTTGGAT 59.828 50.000 1.97 0.00 37.37 3.41
6437 7156 1.556911 GGCTGTTCAGGATCTCTTGGA 59.443 52.381 1.97 0.00 0.00 3.53
6438 7157 1.407989 GGGCTGTTCAGGATCTCTTGG 60.408 57.143 1.97 0.00 0.00 3.61
6439 7158 1.558756 AGGGCTGTTCAGGATCTCTTG 59.441 52.381 1.97 0.00 0.00 3.02
6440 7159 1.963985 AGGGCTGTTCAGGATCTCTT 58.036 50.000 1.97 0.00 0.00 2.85
6441 7160 2.676748 CTAGGGCTGTTCAGGATCTCT 58.323 52.381 1.97 0.00 0.00 3.10
6442 7161 1.069978 GCTAGGGCTGTTCAGGATCTC 59.930 57.143 1.97 0.00 35.22 2.75
6455 7174 3.371087 GCACTTGACTAGCTAGGGC 57.629 57.895 24.35 15.83 41.33 5.19
6456 7175 2.103373 TCAGCACTTGACTAGCTAGGG 58.897 52.381 24.35 13.23 36.73 3.53
6475 7194 0.110486 TCTCCAGCAGGGTTGGTTTC 59.890 55.000 0.00 0.00 37.02 2.78
6476 7195 0.555769 TTCTCCAGCAGGGTTGGTTT 59.444 50.000 0.00 0.00 37.02 3.27
6482 7201 1.489649 CTGATGATTCTCCAGCAGGGT 59.510 52.381 0.00 0.00 44.30 4.34
6488 7207 3.806380 CTTGGGACTGATGATTCTCCAG 58.194 50.000 0.00 0.00 0.00 3.86
6489 7208 2.092753 GCTTGGGACTGATGATTCTCCA 60.093 50.000 0.00 0.00 0.00 3.86
6490 7209 2.570135 GCTTGGGACTGATGATTCTCC 58.430 52.381 0.00 0.00 0.00 3.71
6491 7210 2.159043 TCGCTTGGGACTGATGATTCTC 60.159 50.000 0.00 0.00 0.00 2.87
6492 7211 1.833630 TCGCTTGGGACTGATGATTCT 59.166 47.619 0.00 0.00 0.00 2.40
6493 7212 1.936547 GTCGCTTGGGACTGATGATTC 59.063 52.381 10.03 0.00 34.09 2.52
6494 7213 1.407437 GGTCGCTTGGGACTGATGATT 60.407 52.381 15.54 0.00 37.12 2.57
6497 7216 1.811266 CGGTCGCTTGGGACTGATG 60.811 63.158 18.09 4.00 44.39 3.07
6511 7230 0.101399 AGATGCTGATGACGACGGTC 59.899 55.000 0.00 0.00 43.71 4.79
6513 7232 1.485838 GCAGATGCTGATGACGACGG 61.486 60.000 0.00 0.00 38.21 4.79
6583 7302 2.386661 ATCAGGTTGTGATGGACGAC 57.613 50.000 0.00 0.00 44.82 4.34
6615 7334 4.157289 TCCAAATGCTCTGCTTTCTTCATC 59.843 41.667 0.00 0.00 0.00 2.92
6617 7336 3.489355 TCCAAATGCTCTGCTTTCTTCA 58.511 40.909 0.00 0.00 0.00 3.02
6622 7341 1.544691 CAGCTCCAAATGCTCTGCTTT 59.455 47.619 0.00 0.00 38.92 3.51
6641 7360 0.473755 ACAATGGTGGCTGACTGACA 59.526 50.000 0.00 0.00 0.00 3.58
6642 7361 1.537202 GAACAATGGTGGCTGACTGAC 59.463 52.381 0.00 0.00 0.00 3.51
6643 7362 1.142667 TGAACAATGGTGGCTGACTGA 59.857 47.619 0.00 0.00 0.00 3.41
6665 7384 2.355209 GGAGTGGAAGATGGTCCTGAAC 60.355 54.545 0.00 0.00 38.62 3.18
6680 7399 1.133792 ACTGTTGAAGGTTGGGAGTGG 60.134 52.381 0.00 0.00 0.00 4.00
6712 7431 4.414677 TCCTCAGATGATCAGAGGTATGG 58.585 47.826 26.68 8.36 46.57 2.74
6766 7485 3.606662 CGTCGATCCGGAGCCCAT 61.607 66.667 15.35 0.00 0.00 4.00
6799 7518 1.377725 CCCAGTTCATCTGCGCCTT 60.378 57.895 4.18 0.00 42.38 4.35
6800 7519 2.249413 CTCCCAGTTCATCTGCGCCT 62.249 60.000 4.18 0.00 42.38 5.52
6801 7520 1.817099 CTCCCAGTTCATCTGCGCC 60.817 63.158 4.18 0.00 42.38 6.53
6802 7521 0.809241 CTCTCCCAGTTCATCTGCGC 60.809 60.000 0.00 0.00 42.38 6.09
6803 7522 0.809241 GCTCTCCCAGTTCATCTGCG 60.809 60.000 0.00 0.00 42.38 5.18
6831 7550 0.837272 TTCCCGATGACCATTCTCCC 59.163 55.000 0.00 0.00 0.00 4.30
6879 7598 5.420421 TGAAGATGAGGACTCCTACTTTGAG 59.580 44.000 0.00 0.00 31.76 3.02
6894 7613 4.970711 ACAAGGAGGCATATGAAGATGAG 58.029 43.478 6.97 0.00 0.00 2.90
6897 7616 5.579753 ATGACAAGGAGGCATATGAAGAT 57.420 39.130 6.97 0.00 46.78 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.