Multiple sequence alignment - TraesCS1B01G030100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G030100 chr1B 100.000 4011 0 0 1 4011 14863455 14867465 0.000000e+00 7408.0
1 TraesCS1B01G030100 chr1B 90.600 1383 90 13 1724 3087 14951700 14950339 0.000000e+00 1797.0
2 TraesCS1B01G030100 chr1B 86.224 1372 115 32 2 1338 14985872 14984540 0.000000e+00 1419.0
3 TraesCS1B01G030100 chr1B 88.650 511 28 12 1 491 14852299 14852799 2.670000e-166 595.0
4 TraesCS1B01G030100 chr1B 87.967 482 24 11 860 1338 14952375 14951925 4.560000e-149 538.0
5 TraesCS1B01G030100 chr1B 86.449 428 54 4 3491 3917 14933933 14933509 2.180000e-127 466.0
6 TraesCS1B01G030100 chr1B 84.956 226 27 5 3634 3857 14915387 14915167 5.220000e-54 222.0
7 TraesCS1B01G030100 chr1B 88.136 177 19 1 3079 3255 14934104 14933930 4.060000e-50 209.0
8 TraesCS1B01G030100 chr1D 91.387 2357 150 32 940 3263 10031778 10029442 0.000000e+00 3179.0
9 TraesCS1B01G030100 chr1D 91.056 2359 148 35 940 3255 9929873 9932211 0.000000e+00 3129.0
10 TraesCS1B01G030100 chr1D 89.046 1625 131 20 1652 3260 9885553 9887146 0.000000e+00 1971.0
11 TraesCS1B01G030100 chr1D 89.046 1625 131 20 1655 3263 10064947 10063354 0.000000e+00 1971.0
12 TraesCS1B01G030100 chr1D 86.806 1008 73 26 561 1555 10065912 10064952 0.000000e+00 1070.0
13 TraesCS1B01G030100 chr1D 93.978 714 20 8 1 692 9884058 9884770 0.000000e+00 1059.0
14 TraesCS1B01G030100 chr1D 86.224 813 58 23 744 1552 9884786 9885548 0.000000e+00 832.0
15 TraesCS1B01G030100 chr1D 88.710 124 12 2 3323 3446 118811877 118811998 2.500000e-32 150.0
16 TraesCS1B01G030100 chr1A 94.175 1133 66 0 1913 3045 11671226 11672358 0.000000e+00 1727.0
17 TraesCS1B01G030100 chr1A 91.122 1239 72 7 1913 3151 11730832 11729632 0.000000e+00 1644.0
18 TraesCS1B01G030100 chr1A 84.882 635 52 31 940 1551 11670637 11671250 5.740000e-168 601.0
19 TraesCS1B01G030100 chr1A 84.724 635 53 32 940 1551 11731421 11730808 2.670000e-166 595.0
20 TraesCS1B01G030100 chr1A 85.326 184 11 7 3326 3499 276575091 276575268 4.120000e-40 176.0
21 TraesCS1B01G030100 chr1A 92.222 90 5 2 3244 3331 516009593 516009682 4.210000e-25 126.0
22 TraesCS1B01G030100 chr1A 81.000 100 13 6 1556 1652 249387632 249387536 1.550000e-09 75.0
23 TraesCS1B01G030100 chr1A 78.431 102 16 6 1556 1654 489239018 489238920 1.200000e-05 62.1
24 TraesCS1B01G030100 chrUn 86.152 1372 116 32 2 1338 2463598 2462266 0.000000e+00 1413.0
25 TraesCS1B01G030100 chrUn 95.274 402 19 0 2122 2523 478548884 478548483 4.370000e-179 638.0
26 TraesCS1B01G030100 chrUn 81.206 282 24 16 3252 3506 128516494 128516215 2.440000e-47 200.0
27 TraesCS1B01G030100 chr3D 82.540 252 28 6 3249 3487 33188932 33189180 1.460000e-49 207.0
28 TraesCS1B01G030100 chr3D 90.164 122 9 2 3324 3442 600078319 600078198 5.370000e-34 156.0
29 TraesCS1B01G030100 chr3D 94.382 89 3 2 3245 3331 591207999 591207911 6.990000e-28 135.0
30 TraesCS1B01G030100 chr6D 83.333 198 19 7 3258 3442 81770453 81770257 1.920000e-38 171.0
31 TraesCS1B01G030100 chr6D 93.333 90 3 3 3244 3331 435990644 435990556 3.250000e-26 130.0
32 TraesCS1B01G030100 chr6D 87.619 105 10 3 3230 3331 263622275 263622171 7.040000e-23 119.0
33 TraesCS1B01G030100 chr6D 80.952 84 14 2 3923 4004 71819253 71819336 9.300000e-07 65.8
34 TraesCS1B01G030100 chr2B 90.984 122 10 1 3322 3442 468896703 468896582 3.210000e-36 163.0
35 TraesCS1B01G030100 chr2B 90.000 50 2 3 1548 1597 697715556 697715602 1.200000e-05 62.1
36 TraesCS1B01G030100 chr3B 90.678 118 10 1 3325 3442 761883183 761883067 5.370000e-34 156.0
37 TraesCS1B01G030100 chr3B 90.598 117 10 1 3326 3442 215059659 215059544 1.930000e-33 154.0
38 TraesCS1B01G030100 chr3B 91.429 70 4 2 3441 3509 355437368 355437300 1.190000e-15 95.3
39 TraesCS1B01G030100 chr3B 87.500 72 7 2 3441 3511 120570012 120570082 9.240000e-12 82.4
40 TraesCS1B01G030100 chr7A 90.000 120 10 2 3325 3442 658989067 658988948 1.930000e-33 154.0
41 TraesCS1B01G030100 chr7A 88.136 59 6 1 1594 1652 437736 437679 7.190000e-08 69.4
42 TraesCS1B01G030100 chr7A 86.364 66 6 3 3919 3981 105836949 105836884 7.190000e-08 69.4
43 TraesCS1B01G030100 chr7A 84.615 65 5 5 3453 3517 21347872 21347813 4.330000e-05 60.2
44 TraesCS1B01G030100 chr5B 90.598 117 10 1 3326 3442 560152346 560152461 1.930000e-33 154.0
45 TraesCS1B01G030100 chr5B 81.000 100 15 4 1556 1653 594200561 594200658 4.300000e-10 76.8
46 TraesCS1B01G030100 chr4B 90.598 117 10 1 3326 3442 575576904 575576789 1.930000e-33 154.0
47 TraesCS1B01G030100 chr4B 90.000 120 11 1 3324 3443 659672316 659672198 1.930000e-33 154.0
48 TraesCS1B01G030100 chr5A 92.391 92 5 2 3242 3331 652666189 652666098 3.250000e-26 130.0
49 TraesCS1B01G030100 chr5A 88.333 60 5 2 3923 3980 265244052 265243993 2.000000e-08 71.3
50 TraesCS1B01G030100 chr5A 86.441 59 5 3 3919 3974 265270817 265270759 1.200000e-05 62.1
51 TraesCS1B01G030100 chr4D 93.258 89 4 2 3245 3331 106682245 106682333 3.250000e-26 130.0
52 TraesCS1B01G030100 chr4D 94.118 85 3 2 3249 3331 224439347 224439431 1.170000e-25 128.0
53 TraesCS1B01G030100 chr4D 85.227 88 10 3 3441 3525 46654168 46654255 1.990000e-13 87.9
54 TraesCS1B01G030100 chr4D 80.702 114 11 9 1548 1656 465024425 465024318 1.200000e-10 78.7
55 TraesCS1B01G030100 chr7B 98.333 60 0 1 3441 3500 668203247 668203189 1.970000e-18 104.0
56 TraesCS1B01G030100 chr7B 100.000 54 0 0 3440 3493 610465853 610465906 2.550000e-17 100.0
57 TraesCS1B01G030100 chr2A 85.294 102 13 2 1555 1656 674421903 674422002 1.970000e-18 104.0
58 TraesCS1B01G030100 chr4A 78.495 186 18 12 3326 3508 476748247 476748081 7.090000e-18 102.0
59 TraesCS1B01G030100 chr5D 90.789 76 3 1 3423 3494 308623341 308623266 9.170000e-17 99.0
60 TraesCS1B01G030100 chr5D 87.013 77 7 3 3441 3516 326368848 326368774 2.570000e-12 84.2
61 TraesCS1B01G030100 chr7D 91.667 72 3 3 3441 3511 546122600 546122669 3.300000e-16 97.1
62 TraesCS1B01G030100 chr2D 98.182 55 1 0 3441 3495 559209875 559209929 3.300000e-16 97.1
63 TraesCS1B01G030100 chr6B 90.411 73 4 3 3441 3512 67527439 67527369 4.270000e-15 93.5
64 TraesCS1B01G030100 chr6B 85.714 77 8 3 3440 3514 444324796 444324871 1.200000e-10 78.7
65 TraesCS1B01G030100 chr6A 82.292 96 14 3 3917 4009 383875227 383875132 3.320000e-11 80.5
66 TraesCS1B01G030100 chr3A 79.000 100 15 6 1556 1652 689338734 689338638 3.350000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G030100 chr1B 14863455 14867465 4010 False 7408.000000 7408 100.000000 1 4011 1 chr1B.!!$F2 4010
1 TraesCS1B01G030100 chr1B 14984540 14985872 1332 True 1419.000000 1419 86.224000 2 1338 1 chr1B.!!$R2 1336
2 TraesCS1B01G030100 chr1B 14950339 14952375 2036 True 1167.500000 1797 89.283500 860 3087 2 chr1B.!!$R4 2227
3 TraesCS1B01G030100 chr1B 14852299 14852799 500 False 595.000000 595 88.650000 1 491 1 chr1B.!!$F1 490
4 TraesCS1B01G030100 chr1B 14933509 14934104 595 True 337.500000 466 87.292500 3079 3917 2 chr1B.!!$R3 838
5 TraesCS1B01G030100 chr1D 10029442 10031778 2336 True 3179.000000 3179 91.387000 940 3263 1 chr1D.!!$R1 2323
6 TraesCS1B01G030100 chr1D 9929873 9932211 2338 False 3129.000000 3129 91.056000 940 3255 1 chr1D.!!$F1 2315
7 TraesCS1B01G030100 chr1D 10063354 10065912 2558 True 1520.500000 1971 87.926000 561 3263 2 chr1D.!!$R2 2702
8 TraesCS1B01G030100 chr1D 9884058 9887146 3088 False 1287.333333 1971 89.749333 1 3260 3 chr1D.!!$F3 3259
9 TraesCS1B01G030100 chr1A 11670637 11672358 1721 False 1164.000000 1727 89.528500 940 3045 2 chr1A.!!$F3 2105
10 TraesCS1B01G030100 chr1A 11729632 11731421 1789 True 1119.500000 1644 87.923000 940 3151 2 chr1A.!!$R3 2211
11 TraesCS1B01G030100 chrUn 2462266 2463598 1332 True 1413.000000 1413 86.152000 2 1338 1 chrUn.!!$R1 1336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 972 5.012561 AGGATTTAGCAGAGCGATAGGAAAT 59.987 40.0 0.0 0.0 0.00 2.17 F
1302 1384 0.806102 CCGAGTGTAAGTCCGCCATG 60.806 60.0 0.0 0.0 30.63 3.66 F
2046 2164 2.092914 GCCCCTCACAACTAGCTTATGT 60.093 50.0 0.0 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2365 0.105760 TTGGCAATTGTCCCTGGTGT 60.106 50.0 7.75 0.00 0.0 4.16 R
2434 2560 0.541863 CTCGACCTGGGCCAGTTAAT 59.458 55.0 30.68 14.11 0.0 1.40 R
3425 3562 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.00 0.0 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
261 301 6.340522 GGAAAATGTTCATCATTCCGGAAAT 58.659 36.000 23.08 8.43 44.85 2.17
789 839 6.574465 GCTCTAGGTTCTTGAACATTCCTACA 60.574 42.308 14.38 0.00 0.00 2.74
798 848 8.017418 TCTTGAACATTCCTACAAAATTGGTT 57.983 30.769 0.00 0.00 0.00 3.67
905 972 5.012561 AGGATTTAGCAGAGCGATAGGAAAT 59.987 40.000 0.00 0.00 0.00 2.17
906 973 6.211584 AGGATTTAGCAGAGCGATAGGAAATA 59.788 38.462 0.00 0.00 0.00 1.40
907 974 6.874134 GGATTTAGCAGAGCGATAGGAAATAA 59.126 38.462 0.00 0.00 0.00 1.40
1105 1180 4.770362 TGGAGATGACCCGGCGGA 62.770 66.667 30.79 8.18 0.00 5.54
1282 1357 1.006825 CGGCGTCTTCGACATCAACA 61.007 55.000 0.00 0.00 46.73 3.33
1302 1384 0.806102 CCGAGTGTAAGTCCGCCATG 60.806 60.000 0.00 0.00 30.63 3.66
1352 1434 9.252962 CTATTTCAAAGGCATACATTTCCAATC 57.747 33.333 0.00 0.00 0.00 2.67
1358 1440 3.108144 GCATACATTTCCAATCGTGTGC 58.892 45.455 0.00 0.00 38.90 4.57
1626 1725 5.165961 ACAATGTTCTATACAGGCTGTGT 57.834 39.130 29.65 25.11 40.83 3.72
1696 1799 8.415950 TTTCTATAGACCCAAAAAGATTTGCA 57.584 30.769 0.67 0.00 43.73 4.08
1736 1839 6.016276 TCTCTTTTTGCATACCCTTTCTTGTC 60.016 38.462 0.00 0.00 0.00 3.18
1990 2108 2.831685 TTGTATCCTTGTCGTGCTGT 57.168 45.000 0.00 0.00 0.00 4.40
2046 2164 2.092914 GCCCCTCACAACTAGCTTATGT 60.093 50.000 0.00 0.00 0.00 2.29
2243 2365 4.634012 AGTGCATGTACCTCTTTAACCA 57.366 40.909 10.59 0.00 0.00 3.67
2356 2482 6.714810 AGTTTGTAACTCTGTTGCATATTCCA 59.285 34.615 2.44 0.00 37.02 3.53
2360 2486 6.883756 TGTAACTCTGTTGCATATTCCATTGA 59.116 34.615 0.00 0.00 0.00 2.57
2509 2635 7.779073 AGATGAATCTTAAAATCAAGCTTGGG 58.221 34.615 25.73 1.60 31.97 4.12
2511 2637 5.779771 TGAATCTTAAAATCAAGCTTGGGGT 59.220 36.000 25.73 10.04 0.00 4.95
2569 2695 6.183360 TGCTTATGATTGATGGACGAGTTCTA 60.183 38.462 0.00 0.00 0.00 2.10
2589 2715 5.075493 TCTACCTAGAGACGAAAAGGTTGT 58.925 41.667 0.00 0.00 42.34 3.32
2600 2726 4.641094 ACGAAAAGGTTGTTGTTGGACATA 59.359 37.500 0.00 0.00 0.00 2.29
2601 2727 5.300792 ACGAAAAGGTTGTTGTTGGACATAT 59.699 36.000 0.00 0.00 0.00 1.78
2656 2782 5.062308 CGTGAGGTATGCAACTCTTCTTAAC 59.938 44.000 14.82 5.57 34.84 2.01
2660 2786 5.105473 AGGTATGCAACTCTTCTTAACGCTA 60.105 40.000 0.00 0.00 0.00 4.26
2680 2806 3.924918 ATCGAGGGTACATTCGAGATG 57.075 47.619 20.59 6.18 45.81 2.90
2696 2822 4.956700 TCGAGATGAAGTTACTTGAGGGAT 59.043 41.667 0.93 0.00 0.00 3.85
2805 2931 3.262420 GTGAAGACCGTGCAGTTATCAT 58.738 45.455 0.00 0.00 0.00 2.45
3013 3149 2.415625 GCTGGACTATAGGCCGTAATCG 60.416 54.545 20.11 5.02 0.00 3.34
3084 3221 8.692110 TGTGTTATCATGCTTCAAAATGATTC 57.308 30.769 3.69 0.39 39.89 2.52
3196 3333 7.743116 TTTGTAATACTGGATGGAAGGAGTA 57.257 36.000 0.00 0.00 0.00 2.59
3203 3340 5.892348 ACTGGATGGAAGGAGTAATGTTTT 58.108 37.500 0.00 0.00 0.00 2.43
3260 3397 7.657023 TTTTCTGTTATCTACTACTCCCTCC 57.343 40.000 0.00 0.00 0.00 4.30
3263 3400 4.712476 TGTTATCTACTACTCCCTCCGTC 58.288 47.826 0.00 0.00 0.00 4.79
3264 3401 2.955342 ATCTACTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
3265 3402 0.842635 TCTACTACTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
3266 3403 0.549950 CTACTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
3267 3404 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3268 3405 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3269 3406 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3270 3407 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3271 3408 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3272 3409 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3273 3410 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3274 3411 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3275 3412 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3276 3413 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3277 3414 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3278 3415 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3279 3416 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3280 3417 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3281 3418 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3282 3419 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3283 3420 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3284 3421 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3285 3422 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3286 3423 8.726988 CGTCCCAAAATTCTTGTCTTAGATTTA 58.273 33.333 0.00 0.00 0.00 1.40
3320 3457 9.656323 AGGGATGTATCTAATACTAAAGTGTGA 57.344 33.333 0.00 0.00 36.70 3.58
3321 3458 9.694137 GGGATGTATCTAATACTAAAGTGTGAC 57.306 37.037 0.00 0.00 36.70 3.67
3332 3469 9.490083 AATACTAAAGTGTGACTTATACTCCCT 57.510 33.333 0.00 0.00 37.47 4.20
3333 3470 7.407393 ACTAAAGTGTGACTTATACTCCCTC 57.593 40.000 0.00 0.00 37.47 4.30
3334 3471 5.678955 AAAGTGTGACTTATACTCCCTCC 57.321 43.478 0.00 0.00 37.47 4.30
3335 3472 3.288964 AGTGTGACTTATACTCCCTCCG 58.711 50.000 0.00 0.00 0.00 4.63
3336 3473 3.022406 GTGTGACTTATACTCCCTCCGT 58.978 50.000 0.00 0.00 0.00 4.69
3337 3474 3.066481 GTGTGACTTATACTCCCTCCGTC 59.934 52.174 0.00 0.00 0.00 4.79
3338 3475 2.622470 GTGACTTATACTCCCTCCGTCC 59.378 54.545 0.00 0.00 0.00 4.79
3339 3476 2.237643 GACTTATACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
3340 3477 1.572415 ACTTATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
3341 3478 2.179424 ACTTATACTCCCTCCGTCCCAT 59.821 50.000 0.00 0.00 0.00 4.00
3342 3479 3.400322 ACTTATACTCCCTCCGTCCCATA 59.600 47.826 0.00 0.00 0.00 2.74
3343 3480 4.140853 ACTTATACTCCCTCCGTCCCATAA 60.141 45.833 0.00 0.00 0.00 1.90
3344 3481 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3345 3482 2.191981 ACTCCCTCCGTCCCATAATT 57.808 50.000 0.00 0.00 0.00 1.40
3346 3483 2.047830 ACTCCCTCCGTCCCATAATTC 58.952 52.381 0.00 0.00 0.00 2.17
3347 3484 2.330216 CTCCCTCCGTCCCATAATTCT 58.670 52.381 0.00 0.00 0.00 2.40
3348 3485 2.706190 CTCCCTCCGTCCCATAATTCTT 59.294 50.000 0.00 0.00 0.00 2.52
3349 3486 2.438021 TCCCTCCGTCCCATAATTCTTG 59.562 50.000 0.00 0.00 0.00 3.02
3350 3487 2.172717 CCCTCCGTCCCATAATTCTTGT 59.827 50.000 0.00 0.00 0.00 3.16
3351 3488 3.467803 CCTCCGTCCCATAATTCTTGTC 58.532 50.000 0.00 0.00 0.00 3.18
3352 3489 3.134804 CCTCCGTCCCATAATTCTTGTCT 59.865 47.826 0.00 0.00 0.00 3.41
3353 3490 4.384208 CCTCCGTCCCATAATTCTTGTCTT 60.384 45.833 0.00 0.00 0.00 3.01
3354 3491 5.163343 CCTCCGTCCCATAATTCTTGTCTTA 60.163 44.000 0.00 0.00 0.00 2.10
3355 3492 5.914033 TCCGTCCCATAATTCTTGTCTTAG 58.086 41.667 0.00 0.00 0.00 2.18
3356 3493 5.659525 TCCGTCCCATAATTCTTGTCTTAGA 59.340 40.000 0.00 0.00 0.00 2.10
3357 3494 6.326583 TCCGTCCCATAATTCTTGTCTTAGAT 59.673 38.462 0.00 0.00 0.00 1.98
3358 3495 6.992715 CCGTCCCATAATTCTTGTCTTAGATT 59.007 38.462 0.00 0.00 0.00 2.40
3359 3496 7.499232 CCGTCCCATAATTCTTGTCTTAGATTT 59.501 37.037 0.00 0.00 0.00 2.17
3360 3497 8.338259 CGTCCCATAATTCTTGTCTTAGATTTG 58.662 37.037 0.00 0.00 0.00 2.32
3361 3498 9.178758 GTCCCATAATTCTTGTCTTAGATTTGT 57.821 33.333 0.00 0.00 0.00 2.83
3362 3499 9.396022 TCCCATAATTCTTGTCTTAGATTTGTC 57.604 33.333 0.00 0.00 0.00 3.18
3363 3500 9.401058 CCCATAATTCTTGTCTTAGATTTGTCT 57.599 33.333 0.00 0.00 0.00 3.41
3371 3508 9.392259 TCTTGTCTTAGATTTGTCTAGATACGA 57.608 33.333 0.00 0.00 0.00 3.43
3374 3511 9.952188 TGTCTTAGATTTGTCTAGATACGAATG 57.048 33.333 0.00 0.00 34.30 2.67
3383 3520 8.858003 TTGTCTAGATACGAATGAATCAAGAC 57.142 34.615 0.00 0.00 0.00 3.01
3384 3521 7.996385 TGTCTAGATACGAATGAATCAAGACA 58.004 34.615 0.00 4.97 0.00 3.41
3385 3522 8.466798 TGTCTAGATACGAATGAATCAAGACAA 58.533 33.333 6.26 0.00 0.00 3.18
3386 3523 8.963130 GTCTAGATACGAATGAATCAAGACAAG 58.037 37.037 0.00 0.00 0.00 3.16
3387 3524 8.903820 TCTAGATACGAATGAATCAAGACAAGA 58.096 33.333 0.00 0.00 0.00 3.02
3388 3525 9.179552 CTAGATACGAATGAATCAAGACAAGAG 57.820 37.037 0.00 0.00 0.00 2.85
3389 3526 7.776107 AGATACGAATGAATCAAGACAAGAGA 58.224 34.615 0.00 0.00 0.00 3.10
3390 3527 8.420222 AGATACGAATGAATCAAGACAAGAGAT 58.580 33.333 0.00 0.00 0.00 2.75
3391 3528 9.684448 GATACGAATGAATCAAGACAAGAGATA 57.316 33.333 0.00 0.00 0.00 1.98
3392 3529 7.763172 ACGAATGAATCAAGACAAGAGATAC 57.237 36.000 0.00 0.00 0.00 2.24
3393 3530 7.323420 ACGAATGAATCAAGACAAGAGATACA 58.677 34.615 0.00 0.00 0.00 2.29
3394 3531 7.984050 ACGAATGAATCAAGACAAGAGATACAT 59.016 33.333 0.00 0.00 0.00 2.29
3395 3532 8.486383 CGAATGAATCAAGACAAGAGATACATC 58.514 37.037 0.00 0.00 0.00 3.06
3396 3533 9.545105 GAATGAATCAAGACAAGAGATACATCT 57.455 33.333 0.00 0.00 40.50 2.90
3397 3534 8.890124 ATGAATCAAGACAAGAGATACATCTG 57.110 34.615 0.00 0.00 37.25 2.90
3398 3535 7.845037 TGAATCAAGACAAGAGATACATCTGT 58.155 34.615 0.00 0.00 37.25 3.41
3399 3536 8.971073 TGAATCAAGACAAGAGATACATCTGTA 58.029 33.333 0.00 0.00 37.25 2.74
3400 3537 9.979578 GAATCAAGACAAGAGATACATCTGTAT 57.020 33.333 2.53 2.53 43.38 2.29
3429 3566 8.579863 AGACATTTCTAAGACAAGAATTTTGGG 58.420 33.333 5.68 0.00 35.48 4.12
3430 3567 8.477419 ACATTTCTAAGACAAGAATTTTGGGA 57.523 30.769 5.68 0.00 35.48 4.37
3431 3568 8.360390 ACATTTCTAAGACAAGAATTTTGGGAC 58.640 33.333 5.68 0.00 35.48 4.46
3432 3569 6.554334 TTCTAAGACAAGAATTTTGGGACG 57.446 37.500 5.68 0.00 30.54 4.79
3433 3570 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3434 3571 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3435 3572 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3436 3573 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3437 3574 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3438 3575 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3439 3576 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3440 3577 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3441 3578 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3442 3579 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3443 3580 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
3444 3581 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
3445 3582 0.396695 TGGGACGGAGGGAGTACATC 60.397 60.000 0.00 0.00 0.00 3.06
3461 3598 8.295569 GGAGTACATCCGTATTTAGACAAATC 57.704 38.462 0.00 0.00 38.67 2.17
3462 3599 8.142551 GGAGTACATCCGTATTTAGACAAATCT 58.857 37.037 0.00 0.00 38.67 2.40
3467 3604 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3468 3605 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3470 3607 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3471 3608 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
3479 3616 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3480 3617 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3481 3618 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3482 3619 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3483 3620 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3484 3621 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3485 3622 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3486 3623 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3487 3624 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3488 3625 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3489 3626 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3490 3627 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3491 3628 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3492 3629 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3493 3630 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3496 3633 0.822944 GGGACGGAGGGAGTACTAGC 60.823 65.000 0.00 0.00 0.00 3.42
3518 3655 5.953548 AGCATATCATTGGCTGGCATAAATA 59.046 36.000 4.22 3.82 36.34 1.40
3522 3659 4.802307 TCATTGGCTGGCATAAATAGGAA 58.198 39.130 4.22 0.00 0.00 3.36
3533 3670 5.594317 GGCATAAATAGGAAGATGTTGGTGT 59.406 40.000 0.00 0.00 0.00 4.16
3544 3681 4.473444 AGATGTTGGTGTTTCCATGACTT 58.527 39.130 0.00 0.00 46.60 3.01
3554 3691 3.749665 TTCCATGACTTTGCCAAAAGG 57.250 42.857 0.00 0.00 46.01 3.11
3561 3698 2.430694 GACTTTGCCAAAAGGTCAAGGT 59.569 45.455 5.07 0.00 46.01 3.50
3562 3699 3.634910 GACTTTGCCAAAAGGTCAAGGTA 59.365 43.478 5.07 0.00 46.01 3.08
3567 3704 3.320541 TGCCAAAAGGTCAAGGTACAATG 59.679 43.478 0.00 0.00 0.00 2.82
3568 3705 3.320826 GCCAAAAGGTCAAGGTACAATGT 59.679 43.478 0.00 0.00 0.00 2.71
3570 3707 4.340950 CCAAAAGGTCAAGGTACAATGTGT 59.659 41.667 0.00 0.00 0.00 3.72
3571 3708 5.533154 CCAAAAGGTCAAGGTACAATGTGTA 59.467 40.000 0.00 0.00 0.00 2.90
3572 3709 6.208599 CCAAAAGGTCAAGGTACAATGTGTAT 59.791 38.462 0.00 0.00 35.05 2.29
3574 3711 5.099042 AGGTCAAGGTACAATGTGTATCC 57.901 43.478 0.00 0.00 34.57 2.59
3575 3712 4.080526 AGGTCAAGGTACAATGTGTATCCC 60.081 45.833 0.00 0.00 34.57 3.85
3576 3713 4.323945 GGTCAAGGTACAATGTGTATCCCA 60.324 45.833 0.00 0.00 34.57 4.37
3577 3714 5.250200 GTCAAGGTACAATGTGTATCCCAA 58.750 41.667 0.00 0.00 34.57 4.12
3578 3715 5.885912 GTCAAGGTACAATGTGTATCCCAAT 59.114 40.000 0.00 0.00 34.57 3.16
3579 3716 6.377146 GTCAAGGTACAATGTGTATCCCAATT 59.623 38.462 0.00 0.00 34.57 2.32
3581 3718 7.453126 TCAAGGTACAATGTGTATCCCAATTTT 59.547 33.333 0.00 0.00 34.57 1.82
3582 3719 7.169158 AGGTACAATGTGTATCCCAATTTTG 57.831 36.000 0.00 0.00 34.57 2.44
3583 3720 5.810074 GGTACAATGTGTATCCCAATTTTGC 59.190 40.000 0.00 0.00 35.05 3.68
3584 3721 4.831107 ACAATGTGTATCCCAATTTTGCC 58.169 39.130 0.00 0.00 0.00 4.52
3585 3722 4.190772 CAATGTGTATCCCAATTTTGCCC 58.809 43.478 0.00 0.00 0.00 5.36
3586 3723 2.894731 TGTGTATCCCAATTTTGCCCA 58.105 42.857 0.00 0.00 0.00 5.36
3636 3773 1.771854 TGTGTCCAAGGTTCAGGCTAA 59.228 47.619 0.00 0.00 0.00 3.09
3637 3774 2.173782 TGTGTCCAAGGTTCAGGCTAAA 59.826 45.455 0.00 0.00 0.00 1.85
3645 3782 4.706842 AGGTTCAGGCTAAAAGACTCAA 57.293 40.909 0.00 0.00 24.26 3.02
3649 3786 7.231467 AGGTTCAGGCTAAAAGACTCAAATTA 58.769 34.615 0.00 0.00 24.26 1.40
3656 3793 9.301897 AGGCTAAAAGACTCAAATTAATCTTGT 57.698 29.630 0.00 0.00 31.82 3.16
3657 3794 9.346725 GGCTAAAAGACTCAAATTAATCTTGTG 57.653 33.333 0.00 0.66 31.82 3.33
3658 3795 9.899226 GCTAAAAGACTCAAATTAATCTTGTGT 57.101 29.630 13.19 13.19 34.22 3.72
3693 3830 0.741221 GAGCAATCGGCCTTCGTTCT 60.741 55.000 0.00 0.00 46.50 3.01
3698 3835 0.391263 ATCGGCCTTCGTTCTTGGAC 60.391 55.000 0.00 0.00 40.32 4.02
3700 3837 2.677979 GGCCTTCGTTCTTGGACGC 61.678 63.158 0.00 0.00 42.50 5.19
3705 3842 1.993370 CTTCGTTCTTGGACGCCTTAG 59.007 52.381 0.00 0.00 42.50 2.18
3706 3843 0.389426 TCGTTCTTGGACGCCTTAGC 60.389 55.000 0.00 0.00 42.50 3.09
3707 3844 0.669318 CGTTCTTGGACGCCTTAGCA 60.669 55.000 0.00 0.00 39.83 3.49
3708 3845 1.739067 GTTCTTGGACGCCTTAGCAT 58.261 50.000 0.00 0.00 39.83 3.79
3709 3846 2.737359 CGTTCTTGGACGCCTTAGCATA 60.737 50.000 0.00 0.00 39.83 3.14
3710 3847 2.866762 GTTCTTGGACGCCTTAGCATAG 59.133 50.000 0.00 0.00 39.83 2.23
3723 3860 9.751542 ACGCCTTAGCATAGATAATATAATCAC 57.248 33.333 0.00 0.00 39.83 3.06
3724 3861 8.906693 CGCCTTAGCATAGATAATATAATCACG 58.093 37.037 0.00 0.00 39.83 4.35
3725 3862 9.967346 GCCTTAGCATAGATAATATAATCACGA 57.033 33.333 0.00 0.00 39.53 4.35
3740 3877 9.823098 ATATAATCACGACGTATGACTAGAAAC 57.177 33.333 0.00 0.00 0.00 2.78
3752 3889 8.873830 CGTATGACTAGAAACATTTCATGAAGT 58.126 33.333 8.41 2.46 39.61 3.01
3753 3890 9.979270 GTATGACTAGAAACATTTCATGAAGTG 57.021 33.333 24.65 24.65 39.61 3.16
3764 3901 4.437682 TTCATGAAGTGAAAGAGGGTGT 57.562 40.909 3.38 0.00 43.64 4.16
3785 3922 1.134371 GGGAAGACCAGGTATGTGAGC 60.134 57.143 0.00 0.00 39.85 4.26
3797 3935 3.375299 GGTATGTGAGCTGAATTGGACAC 59.625 47.826 0.00 0.00 0.00 3.67
3806 3944 3.751621 CTGAATTGGACACGATGAAAGC 58.248 45.455 0.00 0.00 0.00 3.51
3819 3957 0.176910 TGAAAGCGCATGATCGGGTA 59.823 50.000 11.47 0.00 0.00 3.69
3821 3959 0.178068 AAAGCGCATGATCGGGTAGT 59.822 50.000 11.47 0.00 0.00 2.73
3850 3988 8.534496 GGGAATATTTAAGCCATGATGCTAAAT 58.466 33.333 0.00 5.69 41.80 1.40
3870 4008 9.131791 GCTAAATTTGGGATTTAGTGGAAGATA 57.868 33.333 15.82 0.00 41.32 1.98
3872 4010 8.539117 AAATTTGGGATTTAGTGGAAGATAGG 57.461 34.615 0.00 0.00 0.00 2.57
3876 4014 5.130477 TGGGATTTAGTGGAAGATAGGTCAC 59.870 44.000 0.00 0.00 0.00 3.67
3914 4052 7.907045 GCATTGTACATTCAGTTACATTCTCAG 59.093 37.037 0.00 0.00 0.00 3.35
3917 4055 8.902540 TGTACATTCAGTTACATTCTCAGTTT 57.097 30.769 0.00 0.00 0.00 2.66
3918 4056 9.337396 TGTACATTCAGTTACATTCTCAGTTTT 57.663 29.630 0.00 0.00 0.00 2.43
3919 4057 9.599322 GTACATTCAGTTACATTCTCAGTTTTG 57.401 33.333 0.00 0.00 0.00 2.44
3920 4058 8.225603 ACATTCAGTTACATTCTCAGTTTTGT 57.774 30.769 0.00 0.00 0.00 2.83
3921 4059 8.345565 ACATTCAGTTACATTCTCAGTTTTGTC 58.654 33.333 0.00 0.00 0.00 3.18
3922 4060 6.525121 TCAGTTACATTCTCAGTTTTGTCG 57.475 37.500 0.00 0.00 0.00 4.35
3923 4061 5.465390 TCAGTTACATTCTCAGTTTTGTCGG 59.535 40.000 0.00 0.00 0.00 4.79
3924 4062 4.755123 AGTTACATTCTCAGTTTTGTCGGG 59.245 41.667 0.00 0.00 0.00 5.14
3925 4063 2.504367 ACATTCTCAGTTTTGTCGGGG 58.496 47.619 0.00 0.00 0.00 5.73
3926 4064 1.812571 CATTCTCAGTTTTGTCGGGGG 59.187 52.381 0.00 0.00 0.00 5.40
3927 4065 1.133363 TTCTCAGTTTTGTCGGGGGA 58.867 50.000 0.00 0.00 0.00 4.81
3928 4066 1.358152 TCTCAGTTTTGTCGGGGGAT 58.642 50.000 0.00 0.00 0.00 3.85
3929 4067 1.003118 TCTCAGTTTTGTCGGGGGATG 59.997 52.381 0.00 0.00 0.00 3.51
3930 4068 1.003118 CTCAGTTTTGTCGGGGGATGA 59.997 52.381 0.00 0.00 0.00 2.92
3931 4069 1.165270 CAGTTTTGTCGGGGGATGAC 58.835 55.000 0.00 0.00 36.88 3.06
3932 4070 0.037734 AGTTTTGTCGGGGGATGACC 59.962 55.000 0.00 0.00 35.46 4.02
3957 4095 1.070914 GGTAGTCCCAAGATGGCTAGC 59.929 57.143 6.04 6.04 35.79 3.42
3958 4096 1.070914 GTAGTCCCAAGATGGCTAGCC 59.929 57.143 27.71 27.71 35.79 3.93
3959 4097 1.227674 GTCCCAAGATGGCTAGCCG 60.228 63.158 28.28 13.63 35.79 5.52
3960 4098 2.111878 CCCAAGATGGCTAGCCGG 59.888 66.667 28.28 21.50 35.79 6.13
3961 4099 2.443394 CCCAAGATGGCTAGCCGGA 61.443 63.158 28.28 13.02 35.79 5.14
3962 4100 1.227674 CCAAGATGGCTAGCCGGAC 60.228 63.158 28.28 20.41 39.42 4.79
3963 4101 1.522092 CAAGATGGCTAGCCGGACA 59.478 57.895 28.28 11.81 39.42 4.02
3964 4102 0.531532 CAAGATGGCTAGCCGGACAG 60.532 60.000 28.28 14.36 39.42 3.51
3965 4103 1.690219 AAGATGGCTAGCCGGACAGG 61.690 60.000 28.28 0.00 44.97 4.00
3966 4104 2.365635 ATGGCTAGCCGGACAGGT 60.366 61.111 28.28 5.69 43.70 4.00
3967 4105 2.370647 GATGGCTAGCCGGACAGGTC 62.371 65.000 28.28 13.04 43.70 3.85
3968 4106 3.851128 GGCTAGCCGGACAGGTCC 61.851 72.222 20.16 8.44 46.18 4.46
3998 4136 2.337532 CCGACAACTCCGGTTCGT 59.662 61.111 0.00 0.00 41.91 3.85
3999 4137 2.019951 CCGACAACTCCGGTTCGTG 61.020 63.158 0.00 0.00 41.91 4.35
4000 4138 2.654912 CGACAACTCCGGTTCGTGC 61.655 63.158 0.00 0.00 32.73 5.34
4001 4139 2.280592 ACAACTCCGGTTCGTGCC 60.281 61.111 0.00 0.00 32.73 5.01
4002 4140 3.047877 CAACTCCGGTTCGTGCCC 61.048 66.667 0.00 0.00 32.73 5.36
4003 4141 4.675029 AACTCCGGTTCGTGCCCG 62.675 66.667 0.00 3.71 45.07 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
404 444 8.087750 TCAAGGCTAATTTTCAAATCAACGAAT 58.912 29.630 0.00 0.00 0.00 3.34
550 590 5.743398 CGTGCAAATAAATTCCGTTCATGAT 59.257 36.000 0.00 0.00 0.00 2.45
701 745 6.439675 TCTGTTTGTACTGGTTTTGGTTAC 57.560 37.500 0.00 0.00 0.00 2.50
789 839 2.543653 GCGACAGCTGACAACCAATTTT 60.544 45.455 23.35 0.00 41.01 1.82
819 869 1.212935 GGCCCATTTAGCAGAGGAAGA 59.787 52.381 0.00 0.00 0.00 2.87
905 972 0.326927 CCACGCCCTCCTCCTTTTTA 59.673 55.000 0.00 0.00 0.00 1.52
906 973 1.074951 CCACGCCCTCCTCCTTTTT 59.925 57.895 0.00 0.00 0.00 1.94
907 974 1.842381 CTCCACGCCCTCCTCCTTTT 61.842 60.000 0.00 0.00 0.00 2.27
985 1052 1.592669 CCATGACGATCCCTGTCGC 60.593 63.158 0.00 0.00 45.12 5.19
1105 1180 1.599576 GCGCCTTCTCCTCTTCCTT 59.400 57.895 0.00 0.00 0.00 3.36
1173 1248 3.118482 CCATGACCTGCTTGTGATCTAGT 60.118 47.826 0.00 0.00 0.00 2.57
1282 1357 1.255667 ATGGCGGACTTACACTCGGT 61.256 55.000 0.00 0.00 0.00 4.69
1302 1384 2.764572 TCAGGTCGGGATCTAGGTTTTC 59.235 50.000 0.00 0.00 0.00 2.29
1552 1647 7.606135 TTAATTTGGATCGGATGGAGTAGTA 57.394 36.000 0.00 0.00 0.00 1.82
1626 1725 5.104109 ACTCCCTCCGATCCAAATTAATTGA 60.104 40.000 0.39 0.00 41.85 2.57
1696 1799 4.363991 AAAGAGAAGAGTTGCACTGGAT 57.636 40.909 0.00 0.00 0.00 3.41
1736 1839 1.402456 GGCTTTGAGTCAGCAAGCATG 60.402 52.381 24.13 0.00 39.21 4.06
2046 2164 2.537625 CGCTGCGATGGAAAAACAAAAA 59.462 40.909 18.66 0.00 0.00 1.94
2243 2365 0.105760 TTGGCAATTGTCCCTGGTGT 60.106 50.000 7.75 0.00 0.00 4.16
2356 2482 7.732222 TCCAAATACCAATAAAGCCTTCAAT 57.268 32.000 0.00 0.00 0.00 2.57
2360 2486 8.601546 TGAAAATCCAAATACCAATAAAGCCTT 58.398 29.630 0.00 0.00 0.00 4.35
2427 2553 4.536765 ACCTGGGCCAGTTAATATCAAAG 58.463 43.478 30.68 13.81 0.00 2.77
2434 2560 0.541863 CTCGACCTGGGCCAGTTAAT 59.458 55.000 30.68 14.11 0.00 1.40
2488 2614 6.286240 ACCCCAAGCTTGATTTTAAGATTC 57.714 37.500 28.05 0.00 34.35 2.52
2489 2615 7.182060 TCTACCCCAAGCTTGATTTTAAGATT 58.818 34.615 28.05 2.27 36.79 2.40
2569 2695 4.141779 ACAACAACCTTTTCGTCTCTAGGT 60.142 41.667 0.00 0.00 42.66 3.08
2589 2715 6.818644 GCTCTCAAGAGTTATATGTCCAACAA 59.181 38.462 8.73 0.00 43.85 2.83
2600 2726 6.613153 ACTAAACCAGCTCTCAAGAGTTAT 57.387 37.500 8.73 0.00 43.85 1.89
2601 2727 7.719871 ATACTAAACCAGCTCTCAAGAGTTA 57.280 36.000 8.73 0.00 43.85 2.24
2656 2782 1.534163 TCGAATGTACCCTCGATAGCG 59.466 52.381 11.21 0.00 39.07 4.26
2660 2786 3.487372 TCATCTCGAATGTACCCTCGAT 58.513 45.455 14.55 1.65 42.73 3.59
2671 2797 5.422331 TCCCTCAAGTAACTTCATCTCGAAT 59.578 40.000 0.00 0.00 31.69 3.34
2680 2806 5.998363 ACAGAAACATCCCTCAAGTAACTTC 59.002 40.000 0.00 0.00 0.00 3.01
2696 2822 3.507233 GCCATGATCTTTCCACAGAAACA 59.493 43.478 0.00 0.00 37.07 2.83
3013 3149 8.823818 ACAACTTAGTTTGTCATGTTACTACAC 58.176 33.333 0.00 0.00 34.48 2.90
3135 3272 7.681939 ACAAATTCAATATACCACTTCACGT 57.318 32.000 0.00 0.00 0.00 4.49
3170 3307 7.643123 ACTCCTTCCATCCAGTATTACAAAAT 58.357 34.615 0.00 0.00 0.00 1.82
3174 3311 7.347222 ACATTACTCCTTCCATCCAGTATTACA 59.653 37.037 0.00 0.00 0.00 2.41
3176 3313 7.931015 ACATTACTCCTTCCATCCAGTATTA 57.069 36.000 0.00 0.00 0.00 0.98
3260 3397 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3294 3431 9.656323 TCACACTTTAGTATTAGATACATCCCT 57.344 33.333 1.42 0.00 38.21 4.20
3295 3432 9.694137 GTCACACTTTAGTATTAGATACATCCC 57.306 37.037 1.42 0.00 38.21 3.85
3306 3443 9.490083 AGGGAGTATAAGTCACACTTTAGTATT 57.510 33.333 0.00 0.00 39.51 1.89
3307 3444 9.134055 GAGGGAGTATAAGTCACACTTTAGTAT 57.866 37.037 0.00 0.00 39.51 2.12
3308 3445 7.559170 GGAGGGAGTATAAGTCACACTTTAGTA 59.441 40.741 0.00 0.00 39.51 1.82
3309 3446 6.380560 GGAGGGAGTATAAGTCACACTTTAGT 59.619 42.308 0.00 0.00 39.51 2.24
3310 3447 6.459848 CGGAGGGAGTATAAGTCACACTTTAG 60.460 46.154 0.00 0.00 39.51 1.85
3311 3448 5.359009 CGGAGGGAGTATAAGTCACACTTTA 59.641 44.000 0.00 0.00 39.51 1.85
3312 3449 4.159879 CGGAGGGAGTATAAGTCACACTTT 59.840 45.833 0.00 0.00 39.51 2.66
3313 3450 3.700038 CGGAGGGAGTATAAGTCACACTT 59.300 47.826 0.00 0.00 41.97 3.16
3314 3451 3.288964 CGGAGGGAGTATAAGTCACACT 58.711 50.000 0.00 0.00 0.00 3.55
3315 3452 3.022406 ACGGAGGGAGTATAAGTCACAC 58.978 50.000 0.00 0.00 0.00 3.82
3316 3453 3.285484 GACGGAGGGAGTATAAGTCACA 58.715 50.000 0.00 0.00 0.00 3.58
3317 3454 2.622470 GGACGGAGGGAGTATAAGTCAC 59.378 54.545 0.00 0.00 0.00 3.67
3318 3455 2.423947 GGGACGGAGGGAGTATAAGTCA 60.424 54.545 0.00 0.00 0.00 3.41
3319 3456 2.237643 GGGACGGAGGGAGTATAAGTC 58.762 57.143 0.00 0.00 0.00 3.01
3320 3457 1.572415 TGGGACGGAGGGAGTATAAGT 59.428 52.381 0.00 0.00 0.00 2.24
3321 3458 2.376695 TGGGACGGAGGGAGTATAAG 57.623 55.000 0.00 0.00 0.00 1.73
3322 3459 4.474303 TTATGGGACGGAGGGAGTATAA 57.526 45.455 0.00 0.00 0.00 0.98
3323 3460 4.687262 ATTATGGGACGGAGGGAGTATA 57.313 45.455 0.00 0.00 0.00 1.47
3324 3461 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
3325 3462 3.116862 AGAATTATGGGACGGAGGGAGTA 60.117 47.826 0.00 0.00 0.00 2.59
3326 3463 2.047830 GAATTATGGGACGGAGGGAGT 58.952 52.381 0.00 0.00 0.00 3.85
3327 3464 2.330216 AGAATTATGGGACGGAGGGAG 58.670 52.381 0.00 0.00 0.00 4.30
3328 3465 2.438021 CAAGAATTATGGGACGGAGGGA 59.562 50.000 0.00 0.00 0.00 4.20
3329 3466 2.172717 ACAAGAATTATGGGACGGAGGG 59.827 50.000 0.00 0.00 0.00 4.30
3330 3467 3.134804 AGACAAGAATTATGGGACGGAGG 59.865 47.826 0.00 0.00 0.00 4.30
3331 3468 4.408182 AGACAAGAATTATGGGACGGAG 57.592 45.455 0.00 0.00 0.00 4.63
3332 3469 4.837093 AAGACAAGAATTATGGGACGGA 57.163 40.909 0.00 0.00 0.00 4.69
3333 3470 5.914033 TCTAAGACAAGAATTATGGGACGG 58.086 41.667 0.00 0.00 0.00 4.79
3334 3471 8.338259 CAAATCTAAGACAAGAATTATGGGACG 58.662 37.037 0.00 0.00 0.00 4.79
3335 3472 9.178758 ACAAATCTAAGACAAGAATTATGGGAC 57.821 33.333 0.00 0.00 0.00 4.46
3336 3473 9.396022 GACAAATCTAAGACAAGAATTATGGGA 57.604 33.333 0.00 0.00 0.00 4.37
3337 3474 9.401058 AGACAAATCTAAGACAAGAATTATGGG 57.599 33.333 0.00 0.00 31.46 4.00
3345 3482 9.392259 TCGTATCTAGACAAATCTAAGACAAGA 57.608 33.333 0.00 0.00 36.98 3.02
3348 3485 9.952188 CATTCGTATCTAGACAAATCTAAGACA 57.048 33.333 0.00 0.00 36.98 3.41
3357 3494 9.302345 GTCTTGATTCATTCGTATCTAGACAAA 57.698 33.333 16.29 0.00 43.99 2.83
3358 3495 8.858003 GTCTTGATTCATTCGTATCTAGACAA 57.142 34.615 16.29 0.00 43.99 3.18
3360 3497 8.858003 TTGTCTTGATTCATTCGTATCTAGAC 57.142 34.615 15.10 15.10 44.39 2.59
3361 3498 8.903820 TCTTGTCTTGATTCATTCGTATCTAGA 58.096 33.333 0.00 0.00 31.73 2.43
3362 3499 9.179552 CTCTTGTCTTGATTCATTCGTATCTAG 57.820 37.037 0.00 0.00 0.00 2.43
3363 3500 8.903820 TCTCTTGTCTTGATTCATTCGTATCTA 58.096 33.333 0.00 0.00 0.00 1.98
3364 3501 7.776107 TCTCTTGTCTTGATTCATTCGTATCT 58.224 34.615 0.00 0.00 0.00 1.98
3365 3502 7.993821 TCTCTTGTCTTGATTCATTCGTATC 57.006 36.000 0.00 0.00 0.00 2.24
3366 3503 9.469807 GTATCTCTTGTCTTGATTCATTCGTAT 57.530 33.333 0.00 0.00 0.00 3.06
3367 3504 8.466798 TGTATCTCTTGTCTTGATTCATTCGTA 58.533 33.333 0.00 0.00 0.00 3.43
3368 3505 7.323420 TGTATCTCTTGTCTTGATTCATTCGT 58.677 34.615 0.00 0.00 0.00 3.85
3369 3506 7.761651 TGTATCTCTTGTCTTGATTCATTCG 57.238 36.000 0.00 0.00 0.00 3.34
3370 3507 9.545105 AGATGTATCTCTTGTCTTGATTCATTC 57.455 33.333 0.00 0.00 31.58 2.67
3371 3508 9.327628 CAGATGTATCTCTTGTCTTGATTCATT 57.672 33.333 0.00 0.00 34.22 2.57
3372 3509 8.484575 ACAGATGTATCTCTTGTCTTGATTCAT 58.515 33.333 0.00 0.00 34.22 2.57
3373 3510 7.845037 ACAGATGTATCTCTTGTCTTGATTCA 58.155 34.615 0.00 0.00 34.22 2.57
3374 3511 9.979578 ATACAGATGTATCTCTTGTCTTGATTC 57.020 33.333 0.00 0.00 36.57 2.52
3403 3540 8.579863 CCCAAAATTCTTGTCTTAGAAATGTCT 58.420 33.333 0.00 0.00 37.66 3.41
3404 3541 8.576442 TCCCAAAATTCTTGTCTTAGAAATGTC 58.424 33.333 0.00 0.00 37.66 3.06
3405 3542 8.360390 GTCCCAAAATTCTTGTCTTAGAAATGT 58.640 33.333 0.00 0.00 37.66 2.71
3406 3543 7.538678 CGTCCCAAAATTCTTGTCTTAGAAATG 59.461 37.037 0.00 0.00 37.66 2.32
3407 3544 7.309194 CCGTCCCAAAATTCTTGTCTTAGAAAT 60.309 37.037 0.00 0.00 37.66 2.17
3408 3545 6.016610 CCGTCCCAAAATTCTTGTCTTAGAAA 60.017 38.462 0.00 0.00 37.66 2.52
3409 3546 5.472137 CCGTCCCAAAATTCTTGTCTTAGAA 59.528 40.000 0.00 0.00 38.43 2.10
3410 3547 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3411 3548 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3412 3549 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3413 3550 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3414 3551 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3415 3552 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3416 3553 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3417 3554 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3418 3555 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3419 3556 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3420 3557 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3421 3558 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3422 3559 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3423 3560 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3424 3561 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3425 3562 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3426 3563 0.396695 GATGTACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
3427 3564 1.114119 GGATGTACTCCCTCCGTCCC 61.114 65.000 0.00 0.00 38.19 4.46
3428 3565 1.453762 CGGATGTACTCCCTCCGTCC 61.454 65.000 14.50 0.00 45.30 4.79
3429 3566 2.031360 CGGATGTACTCCCTCCGTC 58.969 63.158 14.50 0.00 45.30 4.79
3430 3567 4.254721 CGGATGTACTCCCTCCGT 57.745 61.111 14.50 0.00 45.30 4.69
3432 3569 5.048154 GTCTAAATACGGATGTACTCCCTCC 60.048 48.000 0.00 0.00 41.49 4.30
3433 3570 5.533903 TGTCTAAATACGGATGTACTCCCTC 59.466 44.000 0.00 0.00 41.49 4.30
3434 3571 5.452255 TGTCTAAATACGGATGTACTCCCT 58.548 41.667 0.00 0.00 41.49 4.20
3435 3572 5.779529 TGTCTAAATACGGATGTACTCCC 57.220 43.478 0.00 0.00 41.49 4.30
3436 3573 8.142551 AGATTTGTCTAAATACGGATGTACTCC 58.857 37.037 0.00 0.00 36.66 3.85
3441 3578 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
3442 3579 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
3444 3581 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
3445 3582 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
3453 3590 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3454 3591 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3455 3592 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3456 3593 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3457 3594 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3458 3595 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3459 3596 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3460 3597 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3461 3598 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3462 3599 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3463 3600 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3464 3601 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3465 3602 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3466 3603 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3467 3604 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3468 3605 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3469 3606 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3470 3607 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3471 3608 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3472 3609 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3473 3610 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3474 3611 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3475 3612 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3476 3613 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
3477 3614 0.822944 GCTAGTACTCCCTCCGTCCC 60.823 65.000 0.00 0.00 0.00 4.46
3478 3615 0.106819 TGCTAGTACTCCCTCCGTCC 60.107 60.000 0.00 0.00 0.00 4.79
3479 3616 1.984066 ATGCTAGTACTCCCTCCGTC 58.016 55.000 0.00 0.00 0.00 4.79
3480 3617 3.074094 TGATATGCTAGTACTCCCTCCGT 59.926 47.826 0.00 0.00 0.00 4.69
3481 3618 3.687125 TGATATGCTAGTACTCCCTCCG 58.313 50.000 0.00 0.00 0.00 4.63
3482 3619 5.105146 CCAATGATATGCTAGTACTCCCTCC 60.105 48.000 0.00 0.00 0.00 4.30
3483 3620 5.625656 GCCAATGATATGCTAGTACTCCCTC 60.626 48.000 0.00 0.00 0.00 4.30
3484 3621 4.223923 GCCAATGATATGCTAGTACTCCCT 59.776 45.833 0.00 0.00 0.00 4.20
3485 3622 4.223923 AGCCAATGATATGCTAGTACTCCC 59.776 45.833 0.00 0.00 32.56 4.30
3486 3623 5.174395 CAGCCAATGATATGCTAGTACTCC 58.826 45.833 0.00 0.00 33.16 3.85
3487 3624 5.174395 CCAGCCAATGATATGCTAGTACTC 58.826 45.833 0.00 0.00 33.16 2.59
3488 3625 4.564406 GCCAGCCAATGATATGCTAGTACT 60.564 45.833 0.00 0.00 33.16 2.73
3489 3626 3.686726 GCCAGCCAATGATATGCTAGTAC 59.313 47.826 0.00 0.00 33.16 2.73
3490 3627 3.327464 TGCCAGCCAATGATATGCTAGTA 59.673 43.478 0.00 0.00 33.16 1.82
3491 3628 2.107031 TGCCAGCCAATGATATGCTAGT 59.893 45.455 0.00 0.00 33.16 2.57
3492 3629 2.786777 TGCCAGCCAATGATATGCTAG 58.213 47.619 0.00 0.00 33.16 3.42
3493 3630 2.955342 TGCCAGCCAATGATATGCTA 57.045 45.000 0.00 0.00 33.16 3.49
3496 3633 6.604396 TCCTATTTATGCCAGCCAATGATATG 59.396 38.462 0.00 0.00 0.00 1.78
3518 3655 3.593442 TGGAAACACCAACATCTTCCT 57.407 42.857 0.00 0.00 46.75 3.36
3533 3670 3.454082 ACCTTTTGGCAAAGTCATGGAAA 59.546 39.130 13.04 0.00 45.59 3.13
3544 3681 3.019799 TGTACCTTGACCTTTTGGCAA 57.980 42.857 0.00 0.00 45.59 4.52
3554 3691 4.839121 TGGGATACACATTGTACCTTGAC 58.161 43.478 0.00 0.00 35.42 3.18
3561 3698 5.105146 GGGCAAAATTGGGATACACATTGTA 60.105 40.000 0.00 0.00 37.24 2.41
3562 3699 4.323409 GGGCAAAATTGGGATACACATTGT 60.323 41.667 0.00 0.00 39.74 2.71
3567 3704 3.971245 TTGGGCAAAATTGGGATACAC 57.029 42.857 0.00 0.00 39.74 2.90
3568 3705 5.396213 GCTAATTGGGCAAAATTGGGATACA 60.396 40.000 7.44 0.00 32.48 2.29
3570 3707 4.968080 AGCTAATTGGGCAAAATTGGGATA 59.032 37.500 7.44 0.00 32.16 2.59
3571 3708 3.781965 AGCTAATTGGGCAAAATTGGGAT 59.218 39.130 7.44 0.00 32.16 3.85
3572 3709 3.180507 AGCTAATTGGGCAAAATTGGGA 58.819 40.909 7.44 0.00 32.16 4.37
3574 3711 6.114767 ACATAAGCTAATTGGGCAAAATTGG 58.885 36.000 7.44 5.95 32.16 3.16
3575 3712 8.715191 TTACATAAGCTAATTGGGCAAAATTG 57.285 30.769 7.44 0.00 32.16 2.32
3576 3713 9.328845 CATTACATAAGCTAATTGGGCAAAATT 57.671 29.630 7.73 3.35 34.24 1.82
3577 3714 8.485392 ACATTACATAAGCTAATTGGGCAAAAT 58.515 29.630 7.73 0.00 0.00 1.82
3578 3715 7.763528 CACATTACATAAGCTAATTGGGCAAAA 59.236 33.333 7.73 0.00 0.00 2.44
3579 3716 7.264221 CACATTACATAAGCTAATTGGGCAAA 58.736 34.615 7.73 0.00 0.00 3.68
3581 3718 5.301551 CCACATTACATAAGCTAATTGGGCA 59.698 40.000 7.73 0.00 0.00 5.36
3582 3719 5.301805 ACCACATTACATAAGCTAATTGGGC 59.698 40.000 0.00 0.00 0.00 5.36
3583 3720 6.735694 GCACCACATTACATAAGCTAATTGGG 60.736 42.308 0.00 0.00 0.00 4.12
3584 3721 6.039717 AGCACCACATTACATAAGCTAATTGG 59.960 38.462 0.00 0.00 0.00 3.16
3585 3722 6.914215 CAGCACCACATTACATAAGCTAATTG 59.086 38.462 0.00 0.00 0.00 2.32
3586 3723 6.828273 TCAGCACCACATTACATAAGCTAATT 59.172 34.615 0.00 0.00 0.00 1.40
3636 3773 9.342308 TCTCACACAAGATTAATTTGAGTCTTT 57.658 29.630 13.71 0.00 32.54 2.52
3637 3774 8.908786 TCTCACACAAGATTAATTTGAGTCTT 57.091 30.769 13.71 0.58 32.54 3.01
3649 3786 9.300681 TCCTCAAAAATTATCTCACACAAGATT 57.699 29.630 0.00 0.00 37.24 2.40
3656 3793 7.414429 CGATTGCTCCTCAAAAATTATCTCACA 60.414 37.037 0.00 0.00 38.34 3.58
3657 3794 6.909357 CGATTGCTCCTCAAAAATTATCTCAC 59.091 38.462 0.00 0.00 38.34 3.51
3658 3795 6.038603 CCGATTGCTCCTCAAAAATTATCTCA 59.961 38.462 0.00 0.00 38.34 3.27
3693 3830 4.948341 TTATCTATGCTAAGGCGTCCAA 57.052 40.909 0.00 0.00 42.25 3.53
3698 3835 8.906693 CGTGATTATATTATCTATGCTAAGGCG 58.093 37.037 3.56 0.00 42.25 5.52
3723 3860 6.864560 TGAAATGTTTCTAGTCATACGTCG 57.135 37.500 0.00 0.00 38.02 5.12
3724 3861 8.407457 TCATGAAATGTTTCTAGTCATACGTC 57.593 34.615 0.00 0.00 46.80 4.34
3725 3862 8.771920 TTCATGAAATGTTTCTAGTCATACGT 57.228 30.769 5.45 0.00 46.80 3.57
3752 3889 1.420138 GTCTTCCCACACCCTCTTTCA 59.580 52.381 0.00 0.00 0.00 2.69
3753 3890 1.271434 GGTCTTCCCACACCCTCTTTC 60.271 57.143 0.00 0.00 0.00 2.62
3762 3899 1.628340 CACATACCTGGTCTTCCCACA 59.372 52.381 0.63 0.00 38.72 4.17
3763 3900 1.906574 TCACATACCTGGTCTTCCCAC 59.093 52.381 0.63 0.00 38.72 4.61
3764 3901 2.187958 CTCACATACCTGGTCTTCCCA 58.812 52.381 0.63 0.00 42.51 4.37
3785 3922 3.725895 CGCTTTCATCGTGTCCAATTCAG 60.726 47.826 0.00 0.00 0.00 3.02
3797 3935 0.110956 CCGATCATGCGCTTTCATCG 60.111 55.000 19.81 19.81 36.85 3.84
3806 3944 0.875908 CCACACTACCCGATCATGCG 60.876 60.000 0.00 0.00 0.00 4.73
3814 3952 4.514066 GCTTAAATATTCCCACACTACCCG 59.486 45.833 0.00 0.00 0.00 5.28
3819 3957 5.765510 TCATGGCTTAAATATTCCCACACT 58.234 37.500 0.00 0.00 0.00 3.55
3821 3959 5.010922 GCATCATGGCTTAAATATTCCCACA 59.989 40.000 0.00 0.00 0.00 4.17
3850 3988 6.216662 TGACCTATCTTCCACTAAATCCCAAA 59.783 38.462 0.00 0.00 0.00 3.28
3870 4008 3.213206 TGCTCATCACAAAAGTGACCT 57.787 42.857 0.00 0.00 36.05 3.85
3872 4010 4.863491 ACAATGCTCATCACAAAAGTGAC 58.137 39.130 0.00 0.00 36.05 3.67
3876 4014 7.085746 TGAATGTACAATGCTCATCACAAAAG 58.914 34.615 0.00 0.00 0.00 2.27
3914 4052 2.563297 GGTCATCCCCCGACAAAAC 58.437 57.895 0.00 0.00 34.97 2.43
3937 4075 1.070914 GCTAGCCATCTTGGGACTACC 59.929 57.143 2.29 0.00 38.19 3.18
3938 4076 1.070914 GGCTAGCCATCTTGGGACTAC 59.929 57.143 29.33 0.00 38.19 2.73
3939 4077 1.424638 GGCTAGCCATCTTGGGACTA 58.575 55.000 29.33 0.00 38.19 2.59
3940 4078 1.690219 CGGCTAGCCATCTTGGGACT 61.690 60.000 32.47 0.00 38.19 3.85
3941 4079 1.227674 CGGCTAGCCATCTTGGGAC 60.228 63.158 32.47 2.33 38.19 4.46
3942 4080 2.443394 CCGGCTAGCCATCTTGGGA 61.443 63.158 32.47 0.00 38.19 4.37
3943 4081 2.111878 CCGGCTAGCCATCTTGGG 59.888 66.667 32.47 20.30 38.19 4.12
3944 4082 1.227674 GTCCGGCTAGCCATCTTGG 60.228 63.158 32.47 23.96 41.55 3.61
3945 4083 0.531532 CTGTCCGGCTAGCCATCTTG 60.532 60.000 32.47 16.01 35.37 3.02
3946 4084 1.690219 CCTGTCCGGCTAGCCATCTT 61.690 60.000 32.47 0.00 35.37 2.40
3947 4085 2.136878 CCTGTCCGGCTAGCCATCT 61.137 63.158 32.47 0.00 35.37 2.90
3948 4086 2.370647 GACCTGTCCGGCTAGCCATC 62.371 65.000 32.47 20.92 35.61 3.51
3949 4087 2.365635 ACCTGTCCGGCTAGCCAT 60.366 61.111 32.47 6.31 35.61 4.40
3950 4088 3.075005 GACCTGTCCGGCTAGCCA 61.075 66.667 32.47 12.45 35.61 4.75
3951 4089 3.851128 GGACCTGTCCGGCTAGCC 61.851 72.222 24.75 24.75 40.36 3.93
3982 4120 2.654912 GCACGAACCGGAGTTGTCG 61.655 63.158 9.46 11.39 35.94 4.35
3983 4121 2.315386 GGCACGAACCGGAGTTGTC 61.315 63.158 9.46 0.00 35.94 3.18
3984 4122 2.280592 GGCACGAACCGGAGTTGT 60.281 61.111 9.46 2.11 35.94 3.32
3985 4123 3.047877 GGGCACGAACCGGAGTTG 61.048 66.667 9.46 1.35 35.94 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.