Multiple sequence alignment - TraesCS1B01G029500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G029500 chr1B 100.000 3827 0 0 1 3827 14288658 14284832 0.000000e+00 7068.0
1 TraesCS1B01G029500 chr1A 96.619 3046 76 10 555 3593 11387753 11390778 0.000000e+00 5029.0
2 TraesCS1B01G029500 chr1A 90.298 907 66 11 847 1739 11205756 11204858 0.000000e+00 1168.0
3 TraesCS1B01G029500 chr1A 94.237 295 17 0 555 849 11206106 11205812 5.830000e-123 451.0
4 TraesCS1B01G029500 chr1A 92.042 289 7 3 1 289 11387330 11387602 3.580000e-105 392.0
5 TraesCS1B01G029500 chr1A 93.023 129 9 0 2422 2550 11164699 11164571 5.050000e-44 189.0
6 TraesCS1B01G029500 chr1A 82.353 102 11 5 457 558 11206267 11206173 8.810000e-12 82.4
7 TraesCS1B01G029500 chr1A 100.000 37 0 0 522 558 11387654 11387690 6.860000e-08 69.4
8 TraesCS1B01G029500 chr1A 100.000 32 0 0 3621 3652 11390780 11390811 4.130000e-05 60.2
9 TraesCS1B01G029500 chr1A 92.105 38 1 1 473 508 11387617 11387654 7.000000e-03 52.8
10 TraesCS1B01G029500 chr5A 92.697 178 11 2 3651 3827 328534526 328534702 4.910000e-64 255.0
11 TraesCS1B01G029500 chr5A 90.173 173 13 4 3655 3825 328539547 328539717 4.980000e-54 222.0
12 TraesCS1B01G029500 chrUn 92.000 175 14 0 3653 3827 79141856 79141682 2.950000e-61 246.0
13 TraesCS1B01G029500 chrUn 92.000 175 14 0 3653 3827 79146869 79146695 2.950000e-61 246.0
14 TraesCS1B01G029500 chr3D 90.857 175 16 0 3653 3827 313941645 313941471 6.390000e-58 235.0
15 TraesCS1B01G029500 chr3D 90.286 175 17 0 3653 3827 313946643 313946469 2.970000e-56 230.0
16 TraesCS1B01G029500 chr3B 87.079 178 16 6 3653 3827 519784802 519784629 1.080000e-45 195.0
17 TraesCS1B01G029500 chr7A 100.000 33 0 0 2339 2371 43178535 43178567 1.150000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G029500 chr1B 14284832 14288658 3826 True 7068.000000 7068 100.000000 1 3827 1 chr1B.!!$R1 3826
1 TraesCS1B01G029500 chr1A 11387330 11390811 3481 False 1120.680000 5029 96.153200 1 3652 5 chr1A.!!$F1 3651
2 TraesCS1B01G029500 chr1A 11204858 11206267 1409 True 567.133333 1168 88.962667 457 1739 3 chr1A.!!$R2 1282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 513 0.036875 ACAAACCTAGGCTGTCTGGC 59.963 55.0 9.30 0.0 42.15 4.85 F
740 813 0.100682 TCGGACATTCAGAGCGCTAC 59.899 55.0 11.50 4.0 0.00 3.58 F
756 829 0.307146 CTACCTACGTCACGCTAGGC 59.693 60.0 19.66 0.0 35.60 3.93 F
1486 1626 0.741326 TCACTCTGCGTCTATGCCTC 59.259 55.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 2542 1.140407 GATGCAGTACGGCGACAGAC 61.140 60.000 16.62 5.87 36.28 3.51 R
2468 2615 2.209273 GCATGGACCCAACAACAAAAC 58.791 47.619 0.00 0.00 0.00 2.43 R
2749 2896 1.524355 CCGACGCTTGCTAGATTCATG 59.476 52.381 0.00 0.00 0.00 3.07 R
2834 2981 0.179205 GTTCTGCGCACTGCTTGATC 60.179 55.000 5.66 0.00 46.63 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.209275 CGACGCTCGCCTTATCCTTG 61.209 60.000 0.00 0.00 31.14 3.61
57 58 0.249238 CCAGATCCGCCTCTTTCGAG 60.249 60.000 0.00 0.00 37.01 4.04
66 67 3.046280 CTCTTTCGAGGTTACCGGC 57.954 57.895 0.00 0.00 33.51 6.13
67 68 0.801067 CTCTTTCGAGGTTACCGGCG 60.801 60.000 0.00 12.16 33.51 6.46
68 69 1.213537 CTTTCGAGGTTACCGGCGA 59.786 57.895 9.30 15.89 34.60 5.54
87 88 0.824759 ACCCTCTCCGTATTCAGCAC 59.175 55.000 0.00 0.00 0.00 4.40
109 110 5.946377 CACTTAGGGGTAGCTCAATTTTCTT 59.054 40.000 0.00 0.00 0.00 2.52
131 132 6.260936 TCTTGAATTCAACAGTGAGTTCTTCC 59.739 38.462 16.91 0.00 45.83 3.46
194 195 7.667043 TGCCGTTCATGATTAATATTACTCC 57.333 36.000 9.60 0.00 0.00 3.85
257 258 0.894184 TAGATCGGATCTGTCCCGCC 60.894 60.000 26.72 0.00 46.10 6.13
303 304 2.186903 CGGAGGGGGACGATTGTG 59.813 66.667 0.00 0.00 0.00 3.33
304 305 2.355986 CGGAGGGGGACGATTGTGA 61.356 63.158 0.00 0.00 0.00 3.58
305 306 1.686325 CGGAGGGGGACGATTGTGAT 61.686 60.000 0.00 0.00 0.00 3.06
306 307 0.179045 GGAGGGGGACGATTGTGATG 60.179 60.000 0.00 0.00 0.00 3.07
307 308 0.179045 GAGGGGGACGATTGTGATGG 60.179 60.000 0.00 0.00 0.00 3.51
308 309 0.914417 AGGGGGACGATTGTGATGGT 60.914 55.000 0.00 0.00 0.00 3.55
309 310 0.463833 GGGGGACGATTGTGATGGTC 60.464 60.000 0.00 0.00 39.47 4.02
312 313 2.280628 GGGACGATTGTGATGGTCTTC 58.719 52.381 0.00 0.00 39.92 2.87
313 314 2.093447 GGGACGATTGTGATGGTCTTCT 60.093 50.000 0.00 0.00 39.92 2.85
314 315 3.190874 GGACGATTGTGATGGTCTTCTC 58.809 50.000 0.00 0.00 39.92 2.87
315 316 3.190874 GACGATTGTGATGGTCTTCTCC 58.809 50.000 0.00 0.00 37.83 3.71
316 317 2.196749 CGATTGTGATGGTCTTCTCCG 58.803 52.381 0.00 0.00 0.00 4.63
317 318 2.159240 CGATTGTGATGGTCTTCTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
318 319 2.743636 TTGTGATGGTCTTCTCCGAC 57.256 50.000 0.00 0.00 0.00 4.79
319 320 1.924731 TGTGATGGTCTTCTCCGACT 58.075 50.000 0.00 0.00 34.38 4.18
320 321 1.819288 TGTGATGGTCTTCTCCGACTC 59.181 52.381 0.00 0.00 34.38 3.36
321 322 2.096248 GTGATGGTCTTCTCCGACTCT 58.904 52.381 0.00 0.00 34.38 3.24
322 323 2.095461 TGATGGTCTTCTCCGACTCTG 58.905 52.381 0.00 0.00 34.38 3.35
323 324 0.820871 ATGGTCTTCTCCGACTCTGC 59.179 55.000 0.00 0.00 34.38 4.26
324 325 1.251527 TGGTCTTCTCCGACTCTGCC 61.252 60.000 0.00 0.00 34.38 4.85
325 326 0.968393 GGTCTTCTCCGACTCTGCCT 60.968 60.000 0.00 0.00 34.38 4.75
326 327 0.454196 GTCTTCTCCGACTCTGCCTC 59.546 60.000 0.00 0.00 0.00 4.70
327 328 0.038310 TCTTCTCCGACTCTGCCTCA 59.962 55.000 0.00 0.00 0.00 3.86
328 329 1.110442 CTTCTCCGACTCTGCCTCAT 58.890 55.000 0.00 0.00 0.00 2.90
329 330 1.066908 CTTCTCCGACTCTGCCTCATC 59.933 57.143 0.00 0.00 0.00 2.92
330 331 0.257328 TCTCCGACTCTGCCTCATCT 59.743 55.000 0.00 0.00 0.00 2.90
331 332 0.667993 CTCCGACTCTGCCTCATCTC 59.332 60.000 0.00 0.00 0.00 2.75
332 333 0.753479 TCCGACTCTGCCTCATCTCC 60.753 60.000 0.00 0.00 0.00 3.71
333 334 1.358402 CGACTCTGCCTCATCTCCG 59.642 63.158 0.00 0.00 0.00 4.63
334 335 1.380403 CGACTCTGCCTCATCTCCGT 61.380 60.000 0.00 0.00 0.00 4.69
335 336 0.102120 GACTCTGCCTCATCTCCGTG 59.898 60.000 0.00 0.00 0.00 4.94
336 337 0.613292 ACTCTGCCTCATCTCCGTGT 60.613 55.000 0.00 0.00 0.00 4.49
337 338 0.179116 CTCTGCCTCATCTCCGTGTG 60.179 60.000 0.00 0.00 0.00 3.82
338 339 0.900182 TCTGCCTCATCTCCGTGTGT 60.900 55.000 0.00 0.00 0.00 3.72
339 340 0.459237 CTGCCTCATCTCCGTGTGTC 60.459 60.000 0.00 0.00 0.00 3.67
340 341 0.900182 TGCCTCATCTCCGTGTGTCT 60.900 55.000 0.00 0.00 0.00 3.41
341 342 0.179124 GCCTCATCTCCGTGTGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
342 343 1.468985 CCTCATCTCCGTGTGTCTCT 58.531 55.000 0.00 0.00 0.00 3.10
343 344 1.403679 CCTCATCTCCGTGTGTCTCTC 59.596 57.143 0.00 0.00 0.00 3.20
344 345 2.364632 CTCATCTCCGTGTGTCTCTCT 58.635 52.381 0.00 0.00 0.00 3.10
345 346 2.354510 CTCATCTCCGTGTGTCTCTCTC 59.645 54.545 0.00 0.00 0.00 3.20
346 347 2.026729 TCATCTCCGTGTGTCTCTCTCT 60.027 50.000 0.00 0.00 0.00 3.10
347 348 2.102070 TCTCCGTGTGTCTCTCTCTC 57.898 55.000 0.00 0.00 0.00 3.20
348 349 1.626321 TCTCCGTGTGTCTCTCTCTCT 59.374 52.381 0.00 0.00 0.00 3.10
349 350 2.006888 CTCCGTGTGTCTCTCTCTCTC 58.993 57.143 0.00 0.00 0.00 3.20
350 351 1.626321 TCCGTGTGTCTCTCTCTCTCT 59.374 52.381 0.00 0.00 0.00 3.10
351 352 2.039216 TCCGTGTGTCTCTCTCTCTCTT 59.961 50.000 0.00 0.00 0.00 2.85
352 353 3.261137 TCCGTGTGTCTCTCTCTCTCTTA 59.739 47.826 0.00 0.00 0.00 2.10
353 354 3.372822 CCGTGTGTCTCTCTCTCTCTTAC 59.627 52.174 0.00 0.00 0.00 2.34
354 355 3.372822 CGTGTGTCTCTCTCTCTCTTACC 59.627 52.174 0.00 0.00 0.00 2.85
355 356 4.585879 GTGTGTCTCTCTCTCTCTTACCT 58.414 47.826 0.00 0.00 0.00 3.08
356 357 5.007682 GTGTGTCTCTCTCTCTCTTACCTT 58.992 45.833 0.00 0.00 0.00 3.50
357 358 5.007034 TGTGTCTCTCTCTCTCTTACCTTG 58.993 45.833 0.00 0.00 0.00 3.61
358 359 5.221945 TGTGTCTCTCTCTCTCTTACCTTGA 60.222 44.000 0.00 0.00 0.00 3.02
359 360 5.885912 GTGTCTCTCTCTCTCTTACCTTGAT 59.114 44.000 0.00 0.00 0.00 2.57
360 361 7.051623 GTGTCTCTCTCTCTCTTACCTTGATA 58.948 42.308 0.00 0.00 0.00 2.15
361 362 7.554835 GTGTCTCTCTCTCTCTTACCTTGATAA 59.445 40.741 0.00 0.00 0.00 1.75
362 363 7.773224 TGTCTCTCTCTCTCTTACCTTGATAAG 59.227 40.741 0.00 0.00 34.06 1.73
363 364 7.773690 GTCTCTCTCTCTCTTACCTTGATAAGT 59.226 40.741 0.00 0.00 34.36 2.24
364 365 8.994500 TCTCTCTCTCTCTTACCTTGATAAGTA 58.006 37.037 0.00 0.00 34.36 2.24
365 366 9.793259 CTCTCTCTCTCTTACCTTGATAAGTAT 57.207 37.037 0.00 0.00 34.36 2.12
374 375 9.175312 TCTTACCTTGATAAGTATATCTAGCCG 57.825 37.037 2.93 0.00 38.96 5.52
375 376 6.210287 ACCTTGATAAGTATATCTAGCCGC 57.790 41.667 2.93 0.00 38.96 6.53
376 377 5.715279 ACCTTGATAAGTATATCTAGCCGCA 59.285 40.000 0.00 0.00 38.96 5.69
377 378 6.210784 ACCTTGATAAGTATATCTAGCCGCAA 59.789 38.462 0.00 0.00 38.96 4.85
378 379 6.754209 CCTTGATAAGTATATCTAGCCGCAAG 59.246 42.308 0.00 0.00 38.96 4.01
398 399 3.214123 CGACCCGCCGTCTCCATA 61.214 66.667 0.24 0.00 39.56 2.74
399 400 2.777972 CGACCCGCCGTCTCCATAA 61.778 63.158 0.24 0.00 39.56 1.90
400 401 1.227176 GACCCGCCGTCTCCATAAC 60.227 63.158 0.00 0.00 38.57 1.89
401 402 1.673808 GACCCGCCGTCTCCATAACT 61.674 60.000 0.00 0.00 38.57 2.24
402 403 1.262640 ACCCGCCGTCTCCATAACTT 61.263 55.000 0.00 0.00 0.00 2.66
403 404 0.810031 CCCGCCGTCTCCATAACTTG 60.810 60.000 0.00 0.00 0.00 3.16
404 405 0.108329 CCGCCGTCTCCATAACTTGT 60.108 55.000 0.00 0.00 0.00 3.16
405 406 1.674817 CCGCCGTCTCCATAACTTGTT 60.675 52.381 0.00 0.00 0.00 2.83
406 407 1.659098 CGCCGTCTCCATAACTTGTTC 59.341 52.381 0.00 0.00 0.00 3.18
407 408 2.674177 CGCCGTCTCCATAACTTGTTCT 60.674 50.000 0.00 0.00 0.00 3.01
408 409 2.673368 GCCGTCTCCATAACTTGTTCTG 59.327 50.000 0.00 0.00 0.00 3.02
409 410 3.864921 GCCGTCTCCATAACTTGTTCTGT 60.865 47.826 0.00 0.00 0.00 3.41
410 411 4.619863 GCCGTCTCCATAACTTGTTCTGTA 60.620 45.833 0.00 0.00 0.00 2.74
411 412 5.475719 CCGTCTCCATAACTTGTTCTGTAA 58.524 41.667 0.00 0.00 0.00 2.41
412 413 5.929992 CCGTCTCCATAACTTGTTCTGTAAA 59.070 40.000 0.00 0.00 0.00 2.01
413 414 6.128634 CCGTCTCCATAACTTGTTCTGTAAAC 60.129 42.308 0.00 0.00 0.00 2.01
414 415 6.645415 CGTCTCCATAACTTGTTCTGTAAACT 59.355 38.462 0.00 0.00 0.00 2.66
415 416 7.359264 CGTCTCCATAACTTGTTCTGTAAACTG 60.359 40.741 0.00 0.00 0.00 3.16
416 417 6.426937 TCTCCATAACTTGTTCTGTAAACTGC 59.573 38.462 0.00 0.00 0.00 4.40
417 418 6.296026 TCCATAACTTGTTCTGTAAACTGCT 58.704 36.000 0.00 0.00 0.00 4.24
418 419 6.204688 TCCATAACTTGTTCTGTAAACTGCTG 59.795 38.462 0.00 0.00 0.00 4.41
419 420 3.971032 ACTTGTTCTGTAAACTGCTGC 57.029 42.857 0.00 0.00 0.00 5.25
420 421 3.278574 ACTTGTTCTGTAAACTGCTGCA 58.721 40.909 0.88 0.88 0.00 4.41
421 422 3.694072 ACTTGTTCTGTAAACTGCTGCAA 59.306 39.130 3.02 0.00 0.00 4.08
422 423 3.969117 TGTTCTGTAAACTGCTGCAAG 57.031 42.857 3.02 0.00 0.00 4.01
423 424 2.618241 TGTTCTGTAAACTGCTGCAAGG 59.382 45.455 3.02 0.00 0.00 3.61
424 425 1.238439 TCTGTAAACTGCTGCAAGGC 58.762 50.000 3.02 0.00 0.00 4.35
425 426 0.242017 CTGTAAACTGCTGCAAGGCC 59.758 55.000 3.02 0.00 0.00 5.19
426 427 0.178992 TGTAAACTGCTGCAAGGCCT 60.179 50.000 0.00 0.00 0.00 5.19
427 428 0.523519 GTAAACTGCTGCAAGGCCTC 59.476 55.000 5.23 0.00 0.00 4.70
428 429 0.110295 TAAACTGCTGCAAGGCCTCA 59.890 50.000 5.23 0.00 0.00 3.86
429 430 0.756442 AAACTGCTGCAAGGCCTCAA 60.756 50.000 5.23 0.00 0.00 3.02
430 431 1.458639 AACTGCTGCAAGGCCTCAAC 61.459 55.000 5.23 0.00 0.00 3.18
431 432 1.900016 CTGCTGCAAGGCCTCAACA 60.900 57.895 5.23 3.60 0.00 3.33
432 433 1.455402 TGCTGCAAGGCCTCAACAA 60.455 52.632 5.23 0.00 0.00 2.83
433 434 1.288127 GCTGCAAGGCCTCAACAAG 59.712 57.895 5.23 0.67 0.00 3.16
434 435 1.458639 GCTGCAAGGCCTCAACAAGT 61.459 55.000 5.23 0.00 0.00 3.16
435 436 0.595095 CTGCAAGGCCTCAACAAGTC 59.405 55.000 5.23 0.00 0.00 3.01
436 437 1.165907 TGCAAGGCCTCAACAAGTCG 61.166 55.000 5.23 0.00 0.00 4.18
437 438 1.576421 CAAGGCCTCAACAAGTCGC 59.424 57.895 5.23 0.00 0.00 5.19
438 439 0.886490 CAAGGCCTCAACAAGTCGCT 60.886 55.000 5.23 0.00 0.00 4.93
439 440 0.685097 AAGGCCTCAACAAGTCGCTA 59.315 50.000 5.23 0.00 0.00 4.26
440 441 0.247736 AGGCCTCAACAAGTCGCTAG 59.752 55.000 0.00 0.00 0.00 3.42
441 442 1.362406 GGCCTCAACAAGTCGCTAGC 61.362 60.000 4.06 4.06 0.00 3.42
442 443 0.390472 GCCTCAACAAGTCGCTAGCT 60.390 55.000 13.93 0.00 0.00 3.32
443 444 1.135083 GCCTCAACAAGTCGCTAGCTA 60.135 52.381 13.93 0.00 0.00 3.32
444 445 2.482142 GCCTCAACAAGTCGCTAGCTAT 60.482 50.000 13.93 0.00 0.00 2.97
445 446 3.243434 GCCTCAACAAGTCGCTAGCTATA 60.243 47.826 13.93 0.00 0.00 1.31
446 447 4.541779 CCTCAACAAGTCGCTAGCTATAG 58.458 47.826 13.93 0.00 0.00 1.31
447 448 4.276183 CCTCAACAAGTCGCTAGCTATAGA 59.724 45.833 13.93 0.00 0.00 1.98
448 449 5.048364 CCTCAACAAGTCGCTAGCTATAGAT 60.048 44.000 13.93 0.00 0.00 1.98
449 450 6.149640 CCTCAACAAGTCGCTAGCTATAGATA 59.850 42.308 13.93 0.00 0.00 1.98
450 451 7.135089 TCAACAAGTCGCTAGCTATAGATAG 57.865 40.000 18.75 18.75 37.12 2.08
451 452 6.149640 TCAACAAGTCGCTAGCTATAGATAGG 59.850 42.308 23.01 14.52 34.79 2.57
452 453 5.806818 ACAAGTCGCTAGCTATAGATAGGA 58.193 41.667 23.01 16.22 34.79 2.94
453 454 5.644636 ACAAGTCGCTAGCTATAGATAGGAC 59.355 44.000 24.38 24.38 35.96 3.85
454 455 5.687166 AGTCGCTAGCTATAGATAGGACT 57.313 43.478 26.60 26.60 38.49 3.85
455 456 6.057321 AGTCGCTAGCTATAGATAGGACTT 57.943 41.667 26.60 17.95 39.33 3.01
460 461 6.373216 CGCTAGCTATAGATAGGACTTCAAGT 59.627 42.308 23.01 0.00 34.79 3.16
466 467 4.917906 AGATAGGACTTCAAGTTTGGCT 57.082 40.909 0.00 0.00 0.00 4.75
507 508 3.430236 GCAACAAAACAAACCTAGGCTGT 60.430 43.478 9.30 10.10 0.00 4.40
511 512 2.568623 AACAAACCTAGGCTGTCTGG 57.431 50.000 15.61 0.00 0.00 3.86
512 513 0.036875 ACAAACCTAGGCTGTCTGGC 59.963 55.000 9.30 0.00 42.15 4.85
723 796 3.990318 TGTCTGCTCATAGGTGTATCG 57.010 47.619 0.00 0.00 0.00 2.92
740 813 0.100682 TCGGACATTCAGAGCGCTAC 59.899 55.000 11.50 4.00 0.00 3.58
753 826 2.009108 CGCTACCTACGTCACGCTA 58.991 57.895 0.00 0.00 0.00 4.26
756 829 0.307146 CTACCTACGTCACGCTAGGC 59.693 60.000 19.66 0.00 35.60 3.93
807 880 2.362397 GAGGAGATTGCTATCGTCCACA 59.638 50.000 20.07 0.00 35.85 4.17
866 997 8.584063 AGACTTACCTTTTACCTTTCAAAACA 57.416 30.769 0.00 0.00 0.00 2.83
977 1108 0.877071 AGACCAAGCAATGCTCAACG 59.123 50.000 8.71 0.00 38.25 4.10
987 1118 3.291585 CAATGCTCAACGTGTCTTGTTC 58.708 45.455 0.00 0.00 0.00 3.18
988 1119 2.017138 TGCTCAACGTGTCTTGTTCA 57.983 45.000 0.00 0.00 0.00 3.18
1023 1154 1.774254 TCTTTCTTCCACTCTTGCCCA 59.226 47.619 0.00 0.00 0.00 5.36
1416 1556 3.688235 AGTAGTACAAGAAGCCTCTCGT 58.312 45.455 2.52 0.00 0.00 4.18
1418 1558 1.819903 AGTACAAGAAGCCTCTCGTCC 59.180 52.381 0.00 0.00 0.00 4.79
1486 1626 0.741326 TCACTCTGCGTCTATGCCTC 59.259 55.000 0.00 0.00 0.00 4.70
1757 1904 1.075374 TCTATGCCACTTGCCCACTTT 59.925 47.619 0.00 0.00 40.16 2.66
1762 1909 4.511786 TGCCACTTGCCCACTTTATATA 57.488 40.909 0.00 0.00 40.16 0.86
1763 1910 4.861196 TGCCACTTGCCCACTTTATATAA 58.139 39.130 0.00 0.00 40.16 0.98
1822 1969 5.667539 ACTATATACCAGCATGCCACTAG 57.332 43.478 15.66 8.50 31.97 2.57
1859 2006 6.994496 CACCAATAATAAAGATGAGAGCAGGA 59.006 38.462 0.00 0.00 0.00 3.86
2093 2240 7.895429 TCTTAAACATGGATTTTCTTGGGAGAT 59.105 33.333 0.00 0.00 0.00 2.75
2125 2272 8.295288 CCATGCAAGATAATGTTAGAATTCCTC 58.705 37.037 0.65 0.00 0.00 3.71
2202 2349 3.999001 CTGTTTCAGAGAGCTGTATGCAA 59.001 43.478 0.00 0.00 42.84 4.08
2287 2434 7.850935 TTTTGAATAGTACTCCCTCCGATAT 57.149 36.000 0.00 0.00 0.00 1.63
2302 2449 5.530915 CCTCCGATATTTGATGCAGGTTTAA 59.469 40.000 0.00 0.00 0.00 1.52
2336 2483 4.734917 ACTAAAGTTGTACTAGAGCAGCG 58.265 43.478 0.00 0.00 0.00 5.18
2341 2488 2.631418 TGTACTAGAGCAGCGTCAAC 57.369 50.000 0.00 0.00 0.00 3.18
2352 2499 5.694006 AGAGCAGCGTCAACTAATATTGATC 59.306 40.000 0.00 0.00 40.60 2.92
2395 2542 5.467735 ACTTGTAAGTTTTTGTAGCTACCGG 59.532 40.000 21.01 0.00 35.21 5.28
2404 2551 2.117156 TAGCTACCGGTCTGTCGCC 61.117 63.158 12.40 0.00 0.00 5.54
2526 2673 3.859411 TGTGAACCCAACAAGTTTGAC 57.141 42.857 0.00 0.00 0.00 3.18
2538 2685 5.446143 ACAAGTTTGACGATATTGCCAAA 57.554 34.783 0.59 0.59 0.00 3.28
2614 2761 3.004315 GCTGTTCATGAAAGGGTTTTCGA 59.996 43.478 10.35 0.00 44.55 3.71
2749 2896 3.303791 CGAGTGTTTAAGGTTTCCTGTGC 60.304 47.826 0.00 0.00 32.13 4.57
2834 2981 9.011095 GGAGATAATAATGGGATGATGCATATG 57.989 37.037 0.00 0.00 0.00 1.78
2856 3003 2.546494 AAGCAGTGCGCAGAACCAC 61.546 57.895 12.22 0.00 46.13 4.16
2859 3006 2.661866 AGTGCGCAGAACCACGTC 60.662 61.111 12.22 0.00 37.07 4.34
2882 3029 2.051334 TGCTTAGCACGCCCATTAAT 57.949 45.000 1.39 0.00 31.71 1.40
2942 3089 6.422223 CGAGCATATGTAGGCTTACTTTTTG 58.578 40.000 7.57 4.39 44.13 2.44
2943 3090 6.257849 CGAGCATATGTAGGCTTACTTTTTGA 59.742 38.462 7.57 0.00 44.13 2.69
2944 3091 7.321745 AGCATATGTAGGCTTACTTTTTGAC 57.678 36.000 7.57 1.26 40.92 3.18
2945 3092 7.112779 AGCATATGTAGGCTTACTTTTTGACT 58.887 34.615 7.57 3.04 40.92 3.41
2946 3093 7.611855 AGCATATGTAGGCTTACTTTTTGACTT 59.388 33.333 7.57 0.00 40.92 3.01
2947 3094 8.244113 GCATATGTAGGCTTACTTTTTGACTTT 58.756 33.333 7.57 0.00 0.00 2.66
2958 3105 9.840427 CTTACTTTTTGACTTTTTCAGAGACAA 57.160 29.630 0.00 0.00 34.94 3.18
2970 3117 1.374758 GAGACAAGGTGAGTGCCCG 60.375 63.158 0.00 0.00 0.00 6.13
3034 3182 7.519927 TCAAGGTATTGGGTTAAACTAACACT 58.480 34.615 0.00 0.00 42.51 3.55
3134 3282 6.623486 CAGACAATGGATATCAAAGCAACAA 58.377 36.000 4.83 0.00 0.00 2.83
3223 3371 3.372660 TCCAAACAAAACGTAATGGCC 57.627 42.857 0.00 0.00 35.59 5.36
3243 3391 3.797184 GCCGGTTATTGAAAGTGCACAAA 60.797 43.478 21.04 8.14 0.00 2.83
3269 3417 1.645751 GCAAGCGAGAATGAAAAAGCG 59.354 47.619 0.00 0.00 0.00 4.68
3275 3423 3.218398 CGAGAATGAAAAAGCGTGTGTC 58.782 45.455 0.00 0.00 0.00 3.67
3404 3553 6.738114 ACAGAAGTGACACCAAACATATTTG 58.262 36.000 0.84 0.00 44.19 2.32
3492 3641 6.858478 CAGTATTGTGGTAGACAGTCATATCG 59.142 42.308 2.66 0.00 35.44 2.92
3560 3709 3.130516 TGCTCCTGTTACCTAATCTCACG 59.869 47.826 0.00 0.00 0.00 4.35
3593 3742 9.538508 ACGTAATAGGTAGAACATATTTTGGAC 57.461 33.333 2.72 0.00 36.59 4.02
3594 3743 9.537192 CGTAATAGGTAGAACATATTTTGGACA 57.463 33.333 2.72 0.00 36.59 4.02
3598 3747 9.784531 ATAGGTAGAACATATTTTGGACATCAG 57.215 33.333 0.00 0.00 0.00 2.90
3599 3748 7.861629 AGGTAGAACATATTTTGGACATCAGA 58.138 34.615 0.00 0.00 0.00 3.27
3600 3749 8.497745 AGGTAGAACATATTTTGGACATCAGAT 58.502 33.333 0.00 0.00 0.00 2.90
3601 3750 9.778741 GGTAGAACATATTTTGGACATCAGATA 57.221 33.333 0.00 0.00 0.00 1.98
3652 3801 4.202253 GCCTCTTTGATTCACAGGGTTTTT 60.202 41.667 0.00 0.00 0.00 1.94
3653 3802 5.291971 CCTCTTTGATTCACAGGGTTTTTG 58.708 41.667 0.00 0.00 0.00 2.44
3654 3803 5.163416 CCTCTTTGATTCACAGGGTTTTTGT 60.163 40.000 0.00 0.00 0.00 2.83
3655 3804 5.659463 TCTTTGATTCACAGGGTTTTTGTG 58.341 37.500 0.19 0.00 45.61 3.33
3660 3809 2.957491 CACAGGGTTTTTGTGAGCAA 57.043 45.000 0.00 0.00 46.85 3.91
3661 3810 2.539476 CACAGGGTTTTTGTGAGCAAC 58.461 47.619 0.00 0.00 46.85 4.17
3662 3811 2.166254 CACAGGGTTTTTGTGAGCAACT 59.834 45.455 0.00 0.00 46.85 3.16
3663 3812 2.427095 ACAGGGTTTTTGTGAGCAACTC 59.573 45.455 0.00 0.00 33.82 3.01
3664 3813 1.676006 AGGGTTTTTGTGAGCAACTCG 59.324 47.619 0.00 0.00 33.82 4.18
3665 3814 1.477105 GGTTTTTGTGAGCAACTCGC 58.523 50.000 1.23 1.23 40.91 5.03
3676 3825 1.565305 GCAACTCGCTAGATCTGGTG 58.435 55.000 13.09 13.09 37.77 4.17
3677 3826 1.804372 GCAACTCGCTAGATCTGGTGG 60.804 57.143 18.30 11.88 37.77 4.61
3678 3827 1.751351 CAACTCGCTAGATCTGGTGGA 59.249 52.381 18.30 10.07 0.00 4.02
3679 3828 2.145397 ACTCGCTAGATCTGGTGGAA 57.855 50.000 18.30 0.76 0.00 3.53
3680 3829 2.457598 ACTCGCTAGATCTGGTGGAAA 58.542 47.619 18.30 0.07 0.00 3.13
3681 3830 3.034635 ACTCGCTAGATCTGGTGGAAAT 58.965 45.455 18.30 0.84 0.00 2.17
3682 3831 3.068873 ACTCGCTAGATCTGGTGGAAATC 59.931 47.826 18.30 0.00 0.00 2.17
3683 3832 2.034685 TCGCTAGATCTGGTGGAAATCG 59.965 50.000 18.30 6.72 0.00 3.34
3684 3833 2.034685 CGCTAGATCTGGTGGAAATCGA 59.965 50.000 11.57 0.00 0.00 3.59
3685 3834 3.648009 GCTAGATCTGGTGGAAATCGAG 58.352 50.000 5.18 0.00 0.00 4.04
3686 3835 2.611225 AGATCTGGTGGAAATCGAGC 57.389 50.000 0.00 0.00 0.00 5.03
3687 3836 2.114616 AGATCTGGTGGAAATCGAGCT 58.885 47.619 0.00 0.00 0.00 4.09
3688 3837 3.300388 AGATCTGGTGGAAATCGAGCTA 58.700 45.455 0.00 0.00 0.00 3.32
3689 3838 3.320541 AGATCTGGTGGAAATCGAGCTAG 59.679 47.826 0.00 0.00 0.00 3.42
3690 3839 1.757118 TCTGGTGGAAATCGAGCTAGG 59.243 52.381 0.00 0.00 0.00 3.02
3691 3840 0.830648 TGGTGGAAATCGAGCTAGGG 59.169 55.000 0.00 0.00 0.00 3.53
3692 3841 0.831307 GGTGGAAATCGAGCTAGGGT 59.169 55.000 0.00 0.00 0.00 4.34
3693 3842 1.209747 GGTGGAAATCGAGCTAGGGTT 59.790 52.381 0.00 0.00 0.00 4.11
3694 3843 2.355818 GGTGGAAATCGAGCTAGGGTTT 60.356 50.000 0.00 0.00 0.00 3.27
3695 3844 2.937149 GTGGAAATCGAGCTAGGGTTTC 59.063 50.000 12.41 12.41 0.00 2.78
3696 3845 2.569853 TGGAAATCGAGCTAGGGTTTCA 59.430 45.455 19.17 6.38 32.04 2.69
3697 3846 3.199946 TGGAAATCGAGCTAGGGTTTCAT 59.800 43.478 19.17 0.00 32.04 2.57
3698 3847 4.200092 GGAAATCGAGCTAGGGTTTCATT 58.800 43.478 19.17 0.00 32.04 2.57
3699 3848 4.640647 GGAAATCGAGCTAGGGTTTCATTT 59.359 41.667 19.17 6.89 32.04 2.32
3700 3849 5.220873 GGAAATCGAGCTAGGGTTTCATTTC 60.221 44.000 19.17 13.35 32.04 2.17
3701 3850 3.973206 TCGAGCTAGGGTTTCATTTCA 57.027 42.857 0.00 0.00 0.00 2.69
3702 3851 4.280436 TCGAGCTAGGGTTTCATTTCAA 57.720 40.909 0.00 0.00 0.00 2.69
3703 3852 4.647611 TCGAGCTAGGGTTTCATTTCAAA 58.352 39.130 0.00 0.00 0.00 2.69
3704 3853 5.253330 TCGAGCTAGGGTTTCATTTCAAAT 58.747 37.500 0.00 0.00 0.00 2.32
3705 3854 5.354234 TCGAGCTAGGGTTTCATTTCAAATC 59.646 40.000 0.00 0.00 0.00 2.17
3706 3855 5.567138 AGCTAGGGTTTCATTTCAAATCG 57.433 39.130 0.00 0.00 0.00 3.34
3707 3856 5.253330 AGCTAGGGTTTCATTTCAAATCGA 58.747 37.500 0.00 0.00 0.00 3.59
3708 3857 5.355350 AGCTAGGGTTTCATTTCAAATCGAG 59.645 40.000 0.00 0.00 0.00 4.04
3709 3858 5.354234 GCTAGGGTTTCATTTCAAATCGAGA 59.646 40.000 0.00 0.00 0.00 4.04
3710 3859 5.886960 AGGGTTTCATTTCAAATCGAGAG 57.113 39.130 0.00 0.00 0.00 3.20
3722 3871 2.400024 TCGAGAGAGGGGAAGGAGT 58.600 57.895 0.00 0.00 34.84 3.85
3723 3872 0.705253 TCGAGAGAGGGGAAGGAGTT 59.295 55.000 0.00 0.00 34.84 3.01
3724 3873 1.077334 TCGAGAGAGGGGAAGGAGTTT 59.923 52.381 0.00 0.00 34.84 2.66
3725 3874 1.205893 CGAGAGAGGGGAAGGAGTTTG 59.794 57.143 0.00 0.00 0.00 2.93
3726 3875 2.261729 GAGAGAGGGGAAGGAGTTTGT 58.738 52.381 0.00 0.00 0.00 2.83
3727 3876 1.981495 AGAGAGGGGAAGGAGTTTGTG 59.019 52.381 0.00 0.00 0.00 3.33
3728 3877 1.700186 GAGAGGGGAAGGAGTTTGTGT 59.300 52.381 0.00 0.00 0.00 3.72
3729 3878 2.904434 GAGAGGGGAAGGAGTTTGTGTA 59.096 50.000 0.00 0.00 0.00 2.90
3730 3879 2.907042 AGAGGGGAAGGAGTTTGTGTAG 59.093 50.000 0.00 0.00 0.00 2.74
3731 3880 1.351350 AGGGGAAGGAGTTTGTGTAGC 59.649 52.381 0.00 0.00 0.00 3.58
3732 3881 1.613520 GGGGAAGGAGTTTGTGTAGCC 60.614 57.143 0.00 0.00 0.00 3.93
3733 3882 1.351350 GGGAAGGAGTTTGTGTAGCCT 59.649 52.381 0.00 0.00 0.00 4.58
3734 3883 2.570302 GGGAAGGAGTTTGTGTAGCCTA 59.430 50.000 0.00 0.00 0.00 3.93
3735 3884 3.200165 GGGAAGGAGTTTGTGTAGCCTAT 59.800 47.826 0.00 0.00 0.00 2.57
3736 3885 4.443621 GGAAGGAGTTTGTGTAGCCTATC 58.556 47.826 0.00 0.00 0.00 2.08
3737 3886 4.443621 GAAGGAGTTTGTGTAGCCTATCC 58.556 47.826 0.00 0.00 0.00 2.59
3738 3887 2.431057 AGGAGTTTGTGTAGCCTATCCG 59.569 50.000 0.00 0.00 0.00 4.18
3739 3888 2.202566 GAGTTTGTGTAGCCTATCCGC 58.797 52.381 0.00 0.00 0.00 5.54
3740 3889 1.134491 AGTTTGTGTAGCCTATCCGCC 60.134 52.381 0.00 0.00 0.00 6.13
3741 3890 0.179468 TTTGTGTAGCCTATCCGCCC 59.821 55.000 0.00 0.00 0.00 6.13
3742 3891 0.978667 TTGTGTAGCCTATCCGCCCA 60.979 55.000 0.00 0.00 0.00 5.36
3743 3892 0.978667 TGTGTAGCCTATCCGCCCAA 60.979 55.000 0.00 0.00 0.00 4.12
3744 3893 0.532196 GTGTAGCCTATCCGCCCAAC 60.532 60.000 0.00 0.00 0.00 3.77
3745 3894 1.070957 GTAGCCTATCCGCCCAACC 59.929 63.158 0.00 0.00 0.00 3.77
3746 3895 1.383386 TAGCCTATCCGCCCAACCA 60.383 57.895 0.00 0.00 0.00 3.67
3747 3896 1.692173 TAGCCTATCCGCCCAACCAC 61.692 60.000 0.00 0.00 0.00 4.16
3748 3897 2.192175 CCTATCCGCCCAACCACC 59.808 66.667 0.00 0.00 0.00 4.61
3749 3898 2.375345 CCTATCCGCCCAACCACCT 61.375 63.158 0.00 0.00 0.00 4.00
3750 3899 1.052124 CCTATCCGCCCAACCACCTA 61.052 60.000 0.00 0.00 0.00 3.08
3751 3900 0.106149 CTATCCGCCCAACCACCTAC 59.894 60.000 0.00 0.00 0.00 3.18
3752 3901 0.618107 TATCCGCCCAACCACCTACA 60.618 55.000 0.00 0.00 0.00 2.74
3753 3902 2.193087 ATCCGCCCAACCACCTACAC 62.193 60.000 0.00 0.00 0.00 2.90
3754 3903 2.428187 CGCCCAACCACCTACACA 59.572 61.111 0.00 0.00 0.00 3.72
3755 3904 1.671054 CGCCCAACCACCTACACAG 60.671 63.158 0.00 0.00 0.00 3.66
3756 3905 1.971695 GCCCAACCACCTACACAGC 60.972 63.158 0.00 0.00 0.00 4.40
3757 3906 1.761174 CCCAACCACCTACACAGCT 59.239 57.895 0.00 0.00 0.00 4.24
3758 3907 0.981183 CCCAACCACCTACACAGCTA 59.019 55.000 0.00 0.00 0.00 3.32
3759 3908 1.338769 CCCAACCACCTACACAGCTAC 60.339 57.143 0.00 0.00 0.00 3.58
3760 3909 1.346395 CCAACCACCTACACAGCTACA 59.654 52.381 0.00 0.00 0.00 2.74
3761 3910 2.224426 CCAACCACCTACACAGCTACAA 60.224 50.000 0.00 0.00 0.00 2.41
3762 3911 3.472652 CAACCACCTACACAGCTACAAA 58.527 45.455 0.00 0.00 0.00 2.83
3763 3912 3.849563 ACCACCTACACAGCTACAAAA 57.150 42.857 0.00 0.00 0.00 2.44
3764 3913 3.740115 ACCACCTACACAGCTACAAAAG 58.260 45.455 0.00 0.00 0.00 2.27
3765 3914 3.074412 CCACCTACACAGCTACAAAAGG 58.926 50.000 0.00 0.00 0.00 3.11
3766 3915 3.496160 CCACCTACACAGCTACAAAAGGT 60.496 47.826 0.00 0.00 36.31 3.50
3767 3916 4.262721 CCACCTACACAGCTACAAAAGGTA 60.263 45.833 6.62 0.00 34.18 3.08
3768 3917 4.689345 CACCTACACAGCTACAAAAGGTAC 59.311 45.833 6.62 0.00 34.18 3.34
3769 3918 4.345837 ACCTACACAGCTACAAAAGGTACA 59.654 41.667 5.42 0.00 34.18 2.90
3770 3919 5.163280 ACCTACACAGCTACAAAAGGTACAA 60.163 40.000 5.42 0.00 34.18 2.41
3771 3920 5.408604 CCTACACAGCTACAAAAGGTACAAG 59.591 44.000 0.00 0.00 33.59 3.16
3772 3921 3.564225 ACACAGCTACAAAAGGTACAAGC 59.436 43.478 0.00 0.00 33.59 4.01
3773 3922 3.563808 CACAGCTACAAAAGGTACAAGCA 59.436 43.478 0.00 0.00 32.20 3.91
3774 3923 4.216257 CACAGCTACAAAAGGTACAAGCAT 59.784 41.667 0.00 0.00 32.20 3.79
3775 3924 4.455877 ACAGCTACAAAAGGTACAAGCATC 59.544 41.667 0.00 0.00 32.20 3.91
3776 3925 3.684788 AGCTACAAAAGGTACAAGCATCG 59.315 43.478 0.00 0.00 32.20 3.84
3777 3926 3.181510 GCTACAAAAGGTACAAGCATCGG 60.182 47.826 0.00 0.00 30.55 4.18
3778 3927 1.539827 ACAAAAGGTACAAGCATCGGC 59.460 47.619 0.00 0.00 41.61 5.54
3779 3928 1.135402 CAAAAGGTACAAGCATCGGCC 60.135 52.381 0.00 0.00 42.56 6.13
3780 3929 1.024579 AAAGGTACAAGCATCGGCCG 61.025 55.000 22.12 22.12 42.56 6.13
3781 3930 1.895020 AAGGTACAAGCATCGGCCGA 61.895 55.000 33.12 33.12 42.56 5.54
3782 3931 1.448893 GGTACAAGCATCGGCCGAA 60.449 57.895 34.66 16.30 42.56 4.30
3783 3932 1.429148 GGTACAAGCATCGGCCGAAG 61.429 60.000 34.66 29.71 42.56 3.79
3784 3933 1.813753 TACAAGCATCGGCCGAAGC 60.814 57.895 40.15 40.15 42.56 3.86
3797 3946 3.119096 GAAGCCGCCGTCCAGTTC 61.119 66.667 0.00 0.00 0.00 3.01
3798 3947 4.699522 AAGCCGCCGTCCAGTTCC 62.700 66.667 0.00 0.00 0.00 3.62
3800 3949 4.699522 GCCGCCGTCCAGTTCCTT 62.700 66.667 0.00 0.00 0.00 3.36
3801 3950 2.434359 CCGCCGTCCAGTTCCTTC 60.434 66.667 0.00 0.00 0.00 3.46
3802 3951 2.434359 CGCCGTCCAGTTCCTTCC 60.434 66.667 0.00 0.00 0.00 3.46
3803 3952 2.943978 CGCCGTCCAGTTCCTTCCT 61.944 63.158 0.00 0.00 0.00 3.36
3804 3953 1.601419 CGCCGTCCAGTTCCTTCCTA 61.601 60.000 0.00 0.00 0.00 2.94
3805 3954 0.108281 GCCGTCCAGTTCCTTCCTAC 60.108 60.000 0.00 0.00 0.00 3.18
3806 3955 0.535797 CCGTCCAGTTCCTTCCTACC 59.464 60.000 0.00 0.00 0.00 3.18
3807 3956 1.558233 CGTCCAGTTCCTTCCTACCT 58.442 55.000 0.00 0.00 0.00 3.08
3808 3957 2.622452 CCGTCCAGTTCCTTCCTACCTA 60.622 54.545 0.00 0.00 0.00 3.08
3809 3958 3.297736 CGTCCAGTTCCTTCCTACCTAT 58.702 50.000 0.00 0.00 0.00 2.57
3810 3959 3.705072 CGTCCAGTTCCTTCCTACCTATT 59.295 47.826 0.00 0.00 0.00 1.73
3811 3960 4.891756 CGTCCAGTTCCTTCCTACCTATTA 59.108 45.833 0.00 0.00 0.00 0.98
3812 3961 5.221204 CGTCCAGTTCCTTCCTACCTATTAC 60.221 48.000 0.00 0.00 0.00 1.89
3813 3962 5.659971 GTCCAGTTCCTTCCTACCTATTACA 59.340 44.000 0.00 0.00 0.00 2.41
3814 3963 6.326843 GTCCAGTTCCTTCCTACCTATTACAT 59.673 42.308 0.00 0.00 0.00 2.29
3815 3964 6.906901 TCCAGTTCCTTCCTACCTATTACATT 59.093 38.462 0.00 0.00 0.00 2.71
3816 3965 6.992715 CCAGTTCCTTCCTACCTATTACATTG 59.007 42.308 0.00 0.00 0.00 2.82
3817 3966 6.992715 CAGTTCCTTCCTACCTATTACATTGG 59.007 42.308 0.00 0.00 0.00 3.16
3818 3967 6.906901 AGTTCCTTCCTACCTATTACATTGGA 59.093 38.462 0.00 0.00 0.00 3.53
3819 3968 6.996180 TCCTTCCTACCTATTACATTGGAG 57.004 41.667 0.00 0.00 0.00 3.86
3820 3969 6.449956 TCCTTCCTACCTATTACATTGGAGT 58.550 40.000 0.00 0.00 0.00 3.85
3821 3970 6.553852 TCCTTCCTACCTATTACATTGGAGTC 59.446 42.308 0.00 0.00 0.00 3.36
3822 3971 6.555360 CCTTCCTACCTATTACATTGGAGTCT 59.445 42.308 0.00 0.00 0.00 3.24
3823 3972 7.728981 CCTTCCTACCTATTACATTGGAGTCTA 59.271 40.741 0.00 0.00 0.00 2.59
3824 3973 8.474710 TTCCTACCTATTACATTGGAGTCTAC 57.525 38.462 0.00 0.00 0.00 2.59
3825 3974 7.823635 TCCTACCTATTACATTGGAGTCTACT 58.176 38.462 0.00 0.00 0.00 2.57
3826 3975 7.724506 TCCTACCTATTACATTGGAGTCTACTG 59.275 40.741 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.528684 CGAAAGAGGCGGATCTGGAC 60.529 60.000 3.14 0.00 0.00 4.02
57 58 3.073101 AGAGGGTCGCCGGTAACC 61.073 66.667 16.54 16.54 34.64 2.85
58 59 2.493501 GAGAGGGTCGCCGGTAAC 59.506 66.667 1.90 0.86 0.00 2.50
59 60 2.757099 GGAGAGGGTCGCCGGTAA 60.757 66.667 1.90 0.00 0.00 2.85
64 65 1.363080 GAATACGGAGAGGGTCGCC 59.637 63.158 0.00 0.00 32.62 5.54
65 66 0.030908 CTGAATACGGAGAGGGTCGC 59.969 60.000 0.00 0.00 0.00 5.19
66 67 0.030908 GCTGAATACGGAGAGGGTCG 59.969 60.000 0.00 0.00 0.00 4.79
67 68 1.112113 TGCTGAATACGGAGAGGGTC 58.888 55.000 0.00 0.00 0.00 4.46
68 69 0.824759 GTGCTGAATACGGAGAGGGT 59.175 55.000 0.00 0.00 0.00 4.34
87 88 6.180472 TCAAGAAAATTGAGCTACCCCTAAG 58.820 40.000 0.00 0.00 0.00 2.18
109 110 4.511454 CGGAAGAACTCACTGTTGAATTCA 59.489 41.667 3.38 3.38 39.90 2.57
131 132 5.924475 AGAGCGAATCCAAATAATTACCG 57.076 39.130 0.00 0.00 0.00 4.02
194 195 3.000925 ACGCGAGTTAATTGGATTTAGCG 59.999 43.478 15.93 0.00 46.40 4.26
210 211 2.365068 CGCCCGATATTGACGCGAG 61.365 63.158 15.93 0.00 45.41 5.03
211 212 2.354188 CGCCCGATATTGACGCGA 60.354 61.111 15.93 0.00 45.41 5.87
257 258 5.510179 GGATTCCATTCCATTGTTAGGCATG 60.510 44.000 0.00 0.00 35.72 4.06
289 290 0.914417 ACCATCACAATCGTCCCCCT 60.914 55.000 0.00 0.00 0.00 4.79
290 291 0.463833 GACCATCACAATCGTCCCCC 60.464 60.000 0.00 0.00 0.00 5.40
291 292 0.541863 AGACCATCACAATCGTCCCC 59.458 55.000 0.00 0.00 0.00 4.81
292 293 2.093447 AGAAGACCATCACAATCGTCCC 60.093 50.000 0.00 0.00 0.00 4.46
293 294 3.190874 GAGAAGACCATCACAATCGTCC 58.809 50.000 0.00 0.00 0.00 4.79
294 295 3.190874 GGAGAAGACCATCACAATCGTC 58.809 50.000 0.00 0.00 0.00 4.20
296 297 2.159240 TCGGAGAAGACCATCACAATCG 60.159 50.000 0.00 0.00 0.00 3.34
297 298 3.118956 AGTCGGAGAAGACCATCACAATC 60.119 47.826 0.00 0.00 41.83 2.67
298 299 2.834549 AGTCGGAGAAGACCATCACAAT 59.165 45.455 0.00 0.00 41.83 2.71
300 301 1.819288 GAGTCGGAGAAGACCATCACA 59.181 52.381 0.00 0.00 41.83 3.58
303 304 1.202359 GCAGAGTCGGAGAAGACCATC 60.202 57.143 0.00 0.00 41.83 3.51
304 305 0.820871 GCAGAGTCGGAGAAGACCAT 59.179 55.000 0.00 0.00 41.83 3.55
305 306 1.251527 GGCAGAGTCGGAGAAGACCA 61.252 60.000 0.00 0.00 41.83 4.02
306 307 0.968393 AGGCAGAGTCGGAGAAGACC 60.968 60.000 0.00 0.00 41.83 3.85
307 308 0.454196 GAGGCAGAGTCGGAGAAGAC 59.546 60.000 0.00 0.00 39.69 3.01
308 309 0.038310 TGAGGCAGAGTCGGAGAAGA 59.962 55.000 0.00 0.00 39.69 2.87
309 310 1.066908 GATGAGGCAGAGTCGGAGAAG 59.933 57.143 0.00 0.00 39.69 2.85
312 313 0.667993 GAGATGAGGCAGAGTCGGAG 59.332 60.000 0.00 0.00 0.00 4.63
313 314 0.753479 GGAGATGAGGCAGAGTCGGA 60.753 60.000 0.00 0.00 0.00 4.55
314 315 1.739049 GGAGATGAGGCAGAGTCGG 59.261 63.158 0.00 0.00 0.00 4.79
315 316 1.358402 CGGAGATGAGGCAGAGTCG 59.642 63.158 0.00 0.00 0.00 4.18
316 317 0.102120 CACGGAGATGAGGCAGAGTC 59.898 60.000 0.00 0.00 0.00 3.36
317 318 0.613292 ACACGGAGATGAGGCAGAGT 60.613 55.000 0.00 0.00 0.00 3.24
318 319 0.179116 CACACGGAGATGAGGCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
319 320 0.900182 ACACACGGAGATGAGGCAGA 60.900 55.000 0.00 0.00 0.00 4.26
320 321 0.459237 GACACACGGAGATGAGGCAG 60.459 60.000 0.00 0.00 0.00 4.85
321 322 0.900182 AGACACACGGAGATGAGGCA 60.900 55.000 0.00 0.00 0.00 4.75
322 323 0.179124 GAGACACACGGAGATGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
323 324 1.403679 GAGAGACACACGGAGATGAGG 59.596 57.143 0.00 0.00 0.00 3.86
324 325 2.354510 GAGAGAGACACACGGAGATGAG 59.645 54.545 0.00 0.00 0.00 2.90
325 326 2.026729 AGAGAGAGACACACGGAGATGA 60.027 50.000 0.00 0.00 0.00 2.92
326 327 2.354510 GAGAGAGAGACACACGGAGATG 59.645 54.545 0.00 0.00 0.00 2.90
327 328 2.238646 AGAGAGAGAGACACACGGAGAT 59.761 50.000 0.00 0.00 0.00 2.75
328 329 1.626321 AGAGAGAGAGACACACGGAGA 59.374 52.381 0.00 0.00 0.00 3.71
329 330 2.006888 GAGAGAGAGAGACACACGGAG 58.993 57.143 0.00 0.00 0.00 4.63
330 331 1.626321 AGAGAGAGAGAGACACACGGA 59.374 52.381 0.00 0.00 0.00 4.69
331 332 2.107950 AGAGAGAGAGAGACACACGG 57.892 55.000 0.00 0.00 0.00 4.94
332 333 3.372822 GGTAAGAGAGAGAGAGACACACG 59.627 52.174 0.00 0.00 0.00 4.49
333 334 4.585879 AGGTAAGAGAGAGAGAGACACAC 58.414 47.826 0.00 0.00 0.00 3.82
334 335 4.919774 AGGTAAGAGAGAGAGAGACACA 57.080 45.455 0.00 0.00 0.00 3.72
335 336 5.250200 TCAAGGTAAGAGAGAGAGAGACAC 58.750 45.833 0.00 0.00 0.00 3.67
336 337 5.506730 TCAAGGTAAGAGAGAGAGAGACA 57.493 43.478 0.00 0.00 0.00 3.41
337 338 7.773690 ACTTATCAAGGTAAGAGAGAGAGAGAC 59.226 40.741 7.08 0.00 35.96 3.36
338 339 7.867921 ACTTATCAAGGTAAGAGAGAGAGAGA 58.132 38.462 7.08 0.00 35.96 3.10
339 340 9.793259 ATACTTATCAAGGTAAGAGAGAGAGAG 57.207 37.037 7.08 0.00 35.96 3.20
348 349 9.175312 CGGCTAGATATACTTATCAAGGTAAGA 57.825 37.037 7.08 0.00 37.31 2.10
349 350 7.916450 GCGGCTAGATATACTTATCAAGGTAAG 59.084 40.741 0.00 0.00 37.31 2.34
350 351 7.395206 TGCGGCTAGATATACTTATCAAGGTAA 59.605 37.037 0.00 0.00 37.31 2.85
351 352 6.888088 TGCGGCTAGATATACTTATCAAGGTA 59.112 38.462 0.00 0.00 37.31 3.08
352 353 5.715279 TGCGGCTAGATATACTTATCAAGGT 59.285 40.000 0.00 0.00 37.31 3.50
353 354 6.208988 TGCGGCTAGATATACTTATCAAGG 57.791 41.667 0.00 0.00 37.31 3.61
354 355 6.754209 CCTTGCGGCTAGATATACTTATCAAG 59.246 42.308 13.02 0.00 37.31 3.02
355 356 6.631016 CCTTGCGGCTAGATATACTTATCAA 58.369 40.000 13.02 0.00 37.31 2.57
356 357 6.208988 CCTTGCGGCTAGATATACTTATCA 57.791 41.667 13.02 0.00 37.31 2.15
382 383 1.227176 GTTATGGAGACGGCGGGTC 60.227 63.158 13.24 7.06 46.45 4.46
383 384 1.262640 AAGTTATGGAGACGGCGGGT 61.263 55.000 13.24 0.00 0.00 5.28
384 385 0.810031 CAAGTTATGGAGACGGCGGG 60.810 60.000 13.24 0.00 0.00 6.13
385 386 0.108329 ACAAGTTATGGAGACGGCGG 60.108 55.000 13.24 0.00 0.00 6.13
386 387 1.659098 GAACAAGTTATGGAGACGGCG 59.341 52.381 4.80 4.80 0.00 6.46
387 388 2.673368 CAGAACAAGTTATGGAGACGGC 59.327 50.000 0.00 0.00 0.00 5.68
388 389 3.926616 ACAGAACAAGTTATGGAGACGG 58.073 45.455 11.68 0.00 36.21 4.79
389 390 6.645415 AGTTTACAGAACAAGTTATGGAGACG 59.355 38.462 11.68 0.00 35.60 4.18
390 391 7.571428 GCAGTTTACAGAACAAGTTATGGAGAC 60.571 40.741 11.68 8.56 36.21 3.36
391 392 6.426937 GCAGTTTACAGAACAAGTTATGGAGA 59.573 38.462 11.68 0.00 36.21 3.71
392 393 6.428159 AGCAGTTTACAGAACAAGTTATGGAG 59.572 38.462 11.68 0.00 36.21 3.86
393 394 6.204688 CAGCAGTTTACAGAACAAGTTATGGA 59.795 38.462 11.68 0.48 36.21 3.41
394 395 6.373779 CAGCAGTTTACAGAACAAGTTATGG 58.626 40.000 11.68 0.00 36.21 2.74
395 396 5.853282 GCAGCAGTTTACAGAACAAGTTATG 59.147 40.000 6.06 6.06 37.75 1.90
396 397 5.530915 TGCAGCAGTTTACAGAACAAGTTAT 59.469 36.000 0.00 0.00 0.00 1.89
397 398 4.878971 TGCAGCAGTTTACAGAACAAGTTA 59.121 37.500 0.00 0.00 0.00 2.24
398 399 3.694072 TGCAGCAGTTTACAGAACAAGTT 59.306 39.130 0.00 0.00 0.00 2.66
399 400 3.278574 TGCAGCAGTTTACAGAACAAGT 58.721 40.909 0.00 0.00 0.00 3.16
400 401 3.969117 TGCAGCAGTTTACAGAACAAG 57.031 42.857 0.00 0.00 0.00 3.16
401 402 3.066621 CCTTGCAGCAGTTTACAGAACAA 59.933 43.478 0.00 0.00 0.00 2.83
402 403 2.618241 CCTTGCAGCAGTTTACAGAACA 59.382 45.455 0.00 0.00 0.00 3.18
403 404 2.605580 GCCTTGCAGCAGTTTACAGAAC 60.606 50.000 0.00 0.00 0.00 3.01
404 405 1.608590 GCCTTGCAGCAGTTTACAGAA 59.391 47.619 0.00 0.00 0.00 3.02
405 406 1.238439 GCCTTGCAGCAGTTTACAGA 58.762 50.000 0.00 0.00 0.00 3.41
406 407 0.242017 GGCCTTGCAGCAGTTTACAG 59.758 55.000 0.00 0.00 0.00 2.74
407 408 0.178992 AGGCCTTGCAGCAGTTTACA 60.179 50.000 0.00 0.00 0.00 2.41
408 409 0.523519 GAGGCCTTGCAGCAGTTTAC 59.476 55.000 6.77 0.00 0.00 2.01
409 410 0.110295 TGAGGCCTTGCAGCAGTTTA 59.890 50.000 6.77 0.00 0.00 2.01
410 411 0.756442 TTGAGGCCTTGCAGCAGTTT 60.756 50.000 6.77 0.00 0.00 2.66
411 412 1.152694 TTGAGGCCTTGCAGCAGTT 60.153 52.632 6.77 0.00 0.00 3.16
412 413 1.900498 GTTGAGGCCTTGCAGCAGT 60.900 57.895 6.77 0.00 0.00 4.40
413 414 1.457823 TTGTTGAGGCCTTGCAGCAG 61.458 55.000 6.77 0.00 0.00 4.24
414 415 1.455402 TTGTTGAGGCCTTGCAGCA 60.455 52.632 6.77 6.83 0.00 4.41
415 416 1.288127 CTTGTTGAGGCCTTGCAGC 59.712 57.895 6.77 3.66 0.00 5.25
416 417 0.595095 GACTTGTTGAGGCCTTGCAG 59.405 55.000 6.77 1.47 0.00 4.41
417 418 1.165907 CGACTTGTTGAGGCCTTGCA 61.166 55.000 6.77 3.39 0.00 4.08
418 419 1.576421 CGACTTGTTGAGGCCTTGC 59.424 57.895 6.77 0.21 0.00 4.01
419 420 0.886490 AGCGACTTGTTGAGGCCTTG 60.886 55.000 6.77 0.00 0.00 3.61
420 421 0.685097 TAGCGACTTGTTGAGGCCTT 59.315 50.000 6.77 0.00 0.00 4.35
421 422 0.247736 CTAGCGACTTGTTGAGGCCT 59.752 55.000 3.86 3.86 0.00 5.19
422 423 1.362406 GCTAGCGACTTGTTGAGGCC 61.362 60.000 0.00 0.00 0.00 5.19
423 424 0.390472 AGCTAGCGACTTGTTGAGGC 60.390 55.000 9.55 0.00 0.00 4.70
424 425 2.941453 TAGCTAGCGACTTGTTGAGG 57.059 50.000 9.55 0.00 0.00 3.86
425 426 5.425577 TCTATAGCTAGCGACTTGTTGAG 57.574 43.478 9.55 0.00 0.00 3.02
426 427 6.149640 CCTATCTATAGCTAGCGACTTGTTGA 59.850 42.308 9.55 0.00 0.00 3.18
427 428 6.149640 TCCTATCTATAGCTAGCGACTTGTTG 59.850 42.308 9.55 0.00 0.00 3.33
428 429 6.149807 GTCCTATCTATAGCTAGCGACTTGTT 59.850 42.308 9.55 0.00 0.00 2.83
429 430 5.644636 GTCCTATCTATAGCTAGCGACTTGT 59.355 44.000 9.55 0.00 0.00 3.16
430 431 5.878116 AGTCCTATCTATAGCTAGCGACTTG 59.122 44.000 18.90 0.32 28.97 3.16
431 432 6.057321 AGTCCTATCTATAGCTAGCGACTT 57.943 41.667 18.90 0.00 28.97 3.01
432 433 5.687166 AGTCCTATCTATAGCTAGCGACT 57.313 43.478 18.90 18.90 0.00 4.18
433 434 5.875910 TGAAGTCCTATCTATAGCTAGCGAC 59.124 44.000 9.55 16.48 0.00 5.19
434 435 6.051179 TGAAGTCCTATCTATAGCTAGCGA 57.949 41.667 9.55 4.05 0.00 4.93
435 436 6.373216 ACTTGAAGTCCTATCTATAGCTAGCG 59.627 42.308 9.55 0.00 0.00 4.26
436 437 7.696992 ACTTGAAGTCCTATCTATAGCTAGC 57.303 40.000 6.62 6.62 0.00 3.42
437 438 9.906660 CAAACTTGAAGTCCTATCTATAGCTAG 57.093 37.037 0.00 3.97 0.00 3.42
438 439 8.861086 CCAAACTTGAAGTCCTATCTATAGCTA 58.139 37.037 0.00 0.00 0.00 3.32
439 440 7.688083 GCCAAACTTGAAGTCCTATCTATAGCT 60.688 40.741 0.00 0.00 0.00 3.32
440 441 6.425417 GCCAAACTTGAAGTCCTATCTATAGC 59.575 42.308 0.00 0.00 0.00 2.97
441 442 7.655328 CAGCCAAACTTGAAGTCCTATCTATAG 59.345 40.741 0.00 0.00 0.00 1.31
442 443 7.125811 ACAGCCAAACTTGAAGTCCTATCTATA 59.874 37.037 0.00 0.00 0.00 1.31
443 444 6.069963 ACAGCCAAACTTGAAGTCCTATCTAT 60.070 38.462 0.00 0.00 0.00 1.98
444 445 5.248477 ACAGCCAAACTTGAAGTCCTATCTA 59.752 40.000 0.00 0.00 0.00 1.98
445 446 4.042187 ACAGCCAAACTTGAAGTCCTATCT 59.958 41.667 0.00 0.00 0.00 1.98
446 447 4.327680 ACAGCCAAACTTGAAGTCCTATC 58.672 43.478 0.00 0.00 0.00 2.08
447 448 4.373156 ACAGCCAAACTTGAAGTCCTAT 57.627 40.909 0.00 0.00 0.00 2.57
448 449 3.857157 ACAGCCAAACTTGAAGTCCTA 57.143 42.857 0.00 0.00 0.00 2.94
449 450 2.736670 ACAGCCAAACTTGAAGTCCT 57.263 45.000 0.00 0.00 0.00 3.85
450 451 2.034685 GGAACAGCCAAACTTGAAGTCC 59.965 50.000 0.00 0.00 36.34 3.85
451 452 2.687935 TGGAACAGCCAAACTTGAAGTC 59.312 45.455 0.00 0.00 45.87 3.01
452 453 2.733956 TGGAACAGCCAAACTTGAAGT 58.266 42.857 0.00 0.00 45.87 3.01
466 467 2.954989 TGCACAAATACTTGCTGGAACA 59.045 40.909 0.00 0.00 39.62 3.18
473 474 5.462034 TGTTTTGTTGCACAAATACTTGC 57.538 34.783 12.95 0.00 46.17 4.01
474 475 6.740453 GGTTTGTTTTGTTGCACAAATACTTG 59.260 34.615 12.95 0.00 46.17 3.16
476 477 6.169800 AGGTTTGTTTTGTTGCACAAATACT 58.830 32.000 12.95 7.17 46.17 2.12
477 478 6.415798 AGGTTTGTTTTGTTGCACAAATAC 57.584 33.333 12.95 13.22 46.17 1.89
478 479 6.758886 CCTAGGTTTGTTTTGTTGCACAAATA 59.241 34.615 12.95 5.65 46.17 1.40
515 516 1.734137 GCAGATGGATGCAAGGCTG 59.266 57.895 9.66 9.66 45.77 4.85
516 517 4.254721 GCAGATGGATGCAAGGCT 57.745 55.556 0.00 0.00 45.77 4.58
692 765 0.740516 GAGCAGACAAGAGAGCTGGC 60.741 60.000 0.00 0.00 37.48 4.85
723 796 0.461961 AGGTAGCGCTCTGAATGTCC 59.538 55.000 16.34 4.99 0.00 4.02
740 813 2.337749 CTGGCCTAGCGTGACGTAGG 62.338 65.000 21.24 21.24 39.18 3.18
753 826 3.505773 GCCCCCATGATCTGGCCT 61.506 66.667 3.32 0.00 44.46 5.19
756 829 1.071471 GTACGCCCCCATGATCTGG 59.929 63.158 0.00 0.00 45.51 3.86
866 997 3.700538 TGGCCAATAGAGCACAAGAAAT 58.299 40.909 0.61 0.00 0.00 2.17
996 1127 5.334724 GCAAGAGTGGAAGAAAGACATGAAG 60.335 44.000 0.00 0.00 0.00 3.02
1005 1136 1.494721 ACTGGGCAAGAGTGGAAGAAA 59.505 47.619 0.00 0.00 0.00 2.52
1416 1556 3.565307 AGCAAAAATCCAGACACAAGGA 58.435 40.909 0.00 0.00 38.50 3.36
1418 1558 4.276678 TGAGAGCAAAAATCCAGACACAAG 59.723 41.667 0.00 0.00 0.00 3.16
1639 1786 6.486320 TCAAATCACACTCAGCAAAGACATTA 59.514 34.615 0.00 0.00 0.00 1.90
1822 1969 2.010145 TATTGGTGACAGAAGAGCGC 57.990 50.000 0.00 0.00 44.54 5.92
1887 2034 3.188048 CCACAAGTGCTTTTGTTTGCAAA 59.812 39.130 8.05 8.05 39.17 3.68
2168 2315 2.548057 TCTGAAACAGGAATGACGTTGC 59.452 45.455 0.00 0.00 31.51 4.17
2171 2318 3.862642 GCTCTCTGAAACAGGAATGACGT 60.863 47.826 0.00 0.00 31.51 4.34
2202 2349 5.715921 CCCTCATATGGTTTTAGGGGAATT 58.284 41.667 15.71 0.00 42.79 2.17
2287 2434 9.290988 TCTAAGTTGTATTAAACCTGCATCAAA 57.709 29.630 0.00 0.00 0.00 2.69
2325 2472 5.776173 ATATTAGTTGACGCTGCTCTAGT 57.224 39.130 0.00 0.00 0.00 2.57
2336 2483 6.097915 TCCCTCCGATCAATATTAGTTGAC 57.902 41.667 0.00 0.00 40.60 3.18
2341 2488 7.610692 TGTACTACTCCCTCCGATCAATATTAG 59.389 40.741 0.00 0.00 0.00 1.73
2352 2499 5.126707 ACAAGTAAATGTACTACTCCCTCCG 59.873 44.000 0.00 0.00 39.79 4.63
2395 2542 1.140407 GATGCAGTACGGCGACAGAC 61.140 60.000 16.62 5.87 36.28 3.51
2404 2551 7.757097 ATACTAGTTTTCAAGATGCAGTACG 57.243 36.000 0.00 0.00 0.00 3.67
2462 2609 3.576648 GACCCAACAACAAAACAAACGA 58.423 40.909 0.00 0.00 0.00 3.85
2468 2615 2.209273 GCATGGACCCAACAACAAAAC 58.791 47.619 0.00 0.00 0.00 2.43
2526 2673 3.374058 AGTCGGTCTTTTTGGCAATATCG 59.626 43.478 0.00 0.00 0.00 2.92
2614 2761 6.821616 ATAGTTCATCACCTTCTCATCCTT 57.178 37.500 0.00 0.00 0.00 3.36
2749 2896 1.524355 CCGACGCTTGCTAGATTCATG 59.476 52.381 0.00 0.00 0.00 3.07
2834 2981 0.179205 GTTCTGCGCACTGCTTGATC 60.179 55.000 5.66 0.00 46.63 2.92
2856 3003 1.130613 GCGTGCTAAGCAACTGACG 59.869 57.895 0.00 0.00 41.47 4.35
2859 3006 1.308069 ATGGGCGTGCTAAGCAACTG 61.308 55.000 0.00 0.00 41.47 3.16
2896 3043 5.012664 TCGCACCTATTCTCTCTCTCTCTAT 59.987 44.000 0.00 0.00 0.00 1.98
2897 3044 4.345547 TCGCACCTATTCTCTCTCTCTCTA 59.654 45.833 0.00 0.00 0.00 2.43
2898 3045 3.135712 TCGCACCTATTCTCTCTCTCTCT 59.864 47.826 0.00 0.00 0.00 3.10
2899 3046 3.472652 TCGCACCTATTCTCTCTCTCTC 58.527 50.000 0.00 0.00 0.00 3.20
2900 3047 3.476552 CTCGCACCTATTCTCTCTCTCT 58.523 50.000 0.00 0.00 0.00 3.10
2901 3048 2.031157 GCTCGCACCTATTCTCTCTCTC 60.031 54.545 0.00 0.00 0.00 3.20
2911 3058 2.093973 GCCTACATATGCTCGCACCTAT 60.094 50.000 1.58 0.00 0.00 2.57
2942 3089 5.007136 CACTCACCTTGTCTCTGAAAAAGTC 59.993 44.000 0.00 0.00 0.00 3.01
2943 3090 4.878397 CACTCACCTTGTCTCTGAAAAAGT 59.122 41.667 0.00 0.00 0.00 2.66
2944 3091 4.260948 GCACTCACCTTGTCTCTGAAAAAG 60.261 45.833 0.00 0.00 0.00 2.27
2945 3092 3.627577 GCACTCACCTTGTCTCTGAAAAA 59.372 43.478 0.00 0.00 0.00 1.94
2946 3093 3.206150 GCACTCACCTTGTCTCTGAAAA 58.794 45.455 0.00 0.00 0.00 2.29
2947 3094 2.485479 GGCACTCACCTTGTCTCTGAAA 60.485 50.000 0.00 0.00 0.00 2.69
2948 3095 1.070758 GGCACTCACCTTGTCTCTGAA 59.929 52.381 0.00 0.00 0.00 3.02
2949 3096 0.681733 GGCACTCACCTTGTCTCTGA 59.318 55.000 0.00 0.00 0.00 3.27
2958 3105 2.742116 AACACACGGGCACTCACCT 61.742 57.895 0.00 0.00 0.00 4.00
2970 3117 1.360192 GGCTCCTGTTGCAACACAC 59.640 57.895 27.96 16.20 34.70 3.82
3009 3157 7.519927 AGTGTTAGTTTAACCCAATACCTTGA 58.480 34.615 0.00 0.00 37.88 3.02
3010 3158 7.754851 AGTGTTAGTTTAACCCAATACCTTG 57.245 36.000 0.00 0.00 37.88 3.61
3011 3159 7.781219 ACAAGTGTTAGTTTAACCCAATACCTT 59.219 33.333 0.00 0.00 37.88 3.50
3012 3160 7.292319 ACAAGTGTTAGTTTAACCCAATACCT 58.708 34.615 0.00 0.00 37.88 3.08
3134 3282 1.687660 TGCTCACATGGTTGCATTTGT 59.312 42.857 0.00 0.00 0.00 2.83
3194 3342 9.072294 CATTACGTTTTGTTTGGAAGGATAATC 57.928 33.333 0.00 0.00 0.00 1.75
3214 3362 3.375922 ACTTTCAATAACCGGCCATTACG 59.624 43.478 0.00 0.00 0.00 3.18
3223 3371 5.518487 ACTTTTTGTGCACTTTCAATAACCG 59.482 36.000 19.41 0.00 0.00 4.44
3243 3391 3.988379 TTCATTCTCGCTTGCAACTTT 57.012 38.095 0.00 0.00 0.00 2.66
3269 3417 0.721718 GCTGGAACGCATAGACACAC 59.278 55.000 0.00 0.00 0.00 3.82
3275 3423 2.855180 CTTTGTTGCTGGAACGCATAG 58.145 47.619 7.54 0.00 37.64 2.23
3376 3525 4.804108 TGTTTGGTGTCACTTCTGTTTTG 58.196 39.130 2.35 0.00 0.00 2.44
3438 3587 4.382040 CCGGCTACATTATGGATAGGTCTG 60.382 50.000 0.00 0.00 0.00 3.51
3439 3588 3.769844 CCGGCTACATTATGGATAGGTCT 59.230 47.826 0.00 0.00 0.00 3.85
3560 3709 6.199937 TGTTCTACCTATTACGTGTCTTCC 57.800 41.667 0.00 0.00 0.00 3.46
3603 3752 9.500785 CCCAAGTTATGTCCAAAATATGTTTTT 57.499 29.630 0.00 0.00 35.41 1.94
3604 3753 7.606073 GCCCAAGTTATGTCCAAAATATGTTTT 59.394 33.333 0.00 0.00 38.03 2.43
3605 3754 7.102993 GCCCAAGTTATGTCCAAAATATGTTT 58.897 34.615 0.00 0.00 0.00 2.83
3606 3755 6.351796 GGCCCAAGTTATGTCCAAAATATGTT 60.352 38.462 0.00 0.00 0.00 2.71
3607 3756 5.128663 GGCCCAAGTTATGTCCAAAATATGT 59.871 40.000 0.00 0.00 0.00 2.29
3608 3757 5.363580 AGGCCCAAGTTATGTCCAAAATATG 59.636 40.000 0.00 0.00 0.00 1.78
3609 3758 5.528337 AGGCCCAAGTTATGTCCAAAATAT 58.472 37.500 0.00 0.00 0.00 1.28
3610 3759 4.941713 AGGCCCAAGTTATGTCCAAAATA 58.058 39.130 0.00 0.00 0.00 1.40
3611 3760 3.769300 GAGGCCCAAGTTATGTCCAAAAT 59.231 43.478 0.00 0.00 0.00 1.82
3612 3761 3.161866 GAGGCCCAAGTTATGTCCAAAA 58.838 45.455 0.00 0.00 0.00 2.44
3613 3762 2.378547 AGAGGCCCAAGTTATGTCCAAA 59.621 45.455 0.00 0.00 0.00 3.28
3614 3763 1.992557 AGAGGCCCAAGTTATGTCCAA 59.007 47.619 0.00 0.00 0.00 3.53
3615 3764 1.668826 AGAGGCCCAAGTTATGTCCA 58.331 50.000 0.00 0.00 0.00 4.02
3616 3765 2.755103 CAAAGAGGCCCAAGTTATGTCC 59.245 50.000 0.00 0.00 0.00 4.02
3617 3766 3.686016 TCAAAGAGGCCCAAGTTATGTC 58.314 45.455 0.00 0.00 0.00 3.06
3618 3767 3.806949 TCAAAGAGGCCCAAGTTATGT 57.193 42.857 0.00 0.00 0.00 2.29
3619 3768 4.706476 TGAATCAAAGAGGCCCAAGTTATG 59.294 41.667 0.00 0.00 0.00 1.90
3657 3806 1.565305 CACCAGATCTAGCGAGTTGC 58.435 55.000 0.00 0.00 46.98 4.17
3658 3807 1.751351 TCCACCAGATCTAGCGAGTTG 59.249 52.381 0.00 0.00 0.00 3.16
3659 3808 2.145397 TCCACCAGATCTAGCGAGTT 57.855 50.000 0.00 0.00 0.00 3.01
3660 3809 2.145397 TTCCACCAGATCTAGCGAGT 57.855 50.000 0.00 0.00 0.00 4.18
3661 3810 3.648009 GATTTCCACCAGATCTAGCGAG 58.352 50.000 0.00 0.00 0.00 5.03
3662 3811 2.034685 CGATTTCCACCAGATCTAGCGA 59.965 50.000 0.00 0.00 0.00 4.93
3663 3812 2.034685 TCGATTTCCACCAGATCTAGCG 59.965 50.000 0.00 0.00 0.00 4.26
3664 3813 3.648009 CTCGATTTCCACCAGATCTAGC 58.352 50.000 0.00 0.00 0.00 3.42
3665 3814 3.320541 AGCTCGATTTCCACCAGATCTAG 59.679 47.826 0.00 0.00 0.00 2.43
3666 3815 3.300388 AGCTCGATTTCCACCAGATCTA 58.700 45.455 0.00 0.00 0.00 1.98
3667 3816 2.114616 AGCTCGATTTCCACCAGATCT 58.885 47.619 0.00 0.00 0.00 2.75
3668 3817 2.611225 AGCTCGATTTCCACCAGATC 57.389 50.000 0.00 0.00 0.00 2.75
3669 3818 2.366916 CCTAGCTCGATTTCCACCAGAT 59.633 50.000 0.00 0.00 0.00 2.90
3670 3819 1.757118 CCTAGCTCGATTTCCACCAGA 59.243 52.381 0.00 0.00 0.00 3.86
3671 3820 1.202580 CCCTAGCTCGATTTCCACCAG 60.203 57.143 0.00 0.00 0.00 4.00
3672 3821 0.830648 CCCTAGCTCGATTTCCACCA 59.169 55.000 0.00 0.00 0.00 4.17
3673 3822 0.831307 ACCCTAGCTCGATTTCCACC 59.169 55.000 0.00 0.00 0.00 4.61
3674 3823 2.693267 AACCCTAGCTCGATTTCCAC 57.307 50.000 0.00 0.00 0.00 4.02
3675 3824 2.569853 TGAAACCCTAGCTCGATTTCCA 59.430 45.455 0.00 0.00 0.00 3.53
3676 3825 3.261981 TGAAACCCTAGCTCGATTTCC 57.738 47.619 0.00 0.00 0.00 3.13
3677 3826 5.354234 TGAAATGAAACCCTAGCTCGATTTC 59.646 40.000 0.00 0.00 31.93 2.17
3678 3827 5.253330 TGAAATGAAACCCTAGCTCGATTT 58.747 37.500 0.00 0.00 0.00 2.17
3679 3828 4.843728 TGAAATGAAACCCTAGCTCGATT 58.156 39.130 0.00 0.00 0.00 3.34
3680 3829 4.487714 TGAAATGAAACCCTAGCTCGAT 57.512 40.909 0.00 0.00 0.00 3.59
3681 3830 3.973206 TGAAATGAAACCCTAGCTCGA 57.027 42.857 0.00 0.00 0.00 4.04
3682 3831 5.567138 ATTTGAAATGAAACCCTAGCTCG 57.433 39.130 0.00 0.00 0.00 5.03
3683 3832 5.354234 TCGATTTGAAATGAAACCCTAGCTC 59.646 40.000 0.00 0.00 0.00 4.09
3684 3833 5.253330 TCGATTTGAAATGAAACCCTAGCT 58.747 37.500 0.00 0.00 0.00 3.32
3685 3834 5.354234 TCTCGATTTGAAATGAAACCCTAGC 59.646 40.000 0.00 0.00 0.00 3.42
3686 3835 6.818644 TCTCTCGATTTGAAATGAAACCCTAG 59.181 38.462 0.00 0.00 0.00 3.02
3687 3836 6.707290 TCTCTCGATTTGAAATGAAACCCTA 58.293 36.000 0.00 0.00 0.00 3.53
3688 3837 5.560724 TCTCTCGATTTGAAATGAAACCCT 58.439 37.500 0.00 0.00 0.00 4.34
3689 3838 5.163713 CCTCTCTCGATTTGAAATGAAACCC 60.164 44.000 0.00 0.00 0.00 4.11
3690 3839 5.163713 CCCTCTCTCGATTTGAAATGAAACC 60.164 44.000 0.00 0.00 0.00 3.27
3691 3840 5.163713 CCCCTCTCTCGATTTGAAATGAAAC 60.164 44.000 0.00 0.00 0.00 2.78
3692 3841 4.943705 CCCCTCTCTCGATTTGAAATGAAA 59.056 41.667 0.00 0.00 0.00 2.69
3693 3842 4.225042 TCCCCTCTCTCGATTTGAAATGAA 59.775 41.667 0.00 0.00 0.00 2.57
3694 3843 3.774766 TCCCCTCTCTCGATTTGAAATGA 59.225 43.478 0.00 0.00 0.00 2.57
3695 3844 4.142609 TCCCCTCTCTCGATTTGAAATG 57.857 45.455 0.00 0.00 0.00 2.32
3696 3845 4.384647 CCTTCCCCTCTCTCGATTTGAAAT 60.385 45.833 0.00 0.00 0.00 2.17
3697 3846 3.055094 CCTTCCCCTCTCTCGATTTGAAA 60.055 47.826 0.00 0.00 0.00 2.69
3698 3847 2.501723 CCTTCCCCTCTCTCGATTTGAA 59.498 50.000 0.00 0.00 0.00 2.69
3699 3848 2.111384 CCTTCCCCTCTCTCGATTTGA 58.889 52.381 0.00 0.00 0.00 2.69
3700 3849 2.102252 CTCCTTCCCCTCTCTCGATTTG 59.898 54.545 0.00 0.00 0.00 2.32
3701 3850 2.292587 ACTCCTTCCCCTCTCTCGATTT 60.293 50.000 0.00 0.00 0.00 2.17
3702 3851 1.289530 ACTCCTTCCCCTCTCTCGATT 59.710 52.381 0.00 0.00 0.00 3.34
3703 3852 0.930726 ACTCCTTCCCCTCTCTCGAT 59.069 55.000 0.00 0.00 0.00 3.59
3704 3853 0.705253 AACTCCTTCCCCTCTCTCGA 59.295 55.000 0.00 0.00 0.00 4.04
3705 3854 1.205893 CAAACTCCTTCCCCTCTCTCG 59.794 57.143 0.00 0.00 0.00 4.04
3706 3855 2.027653 CACAAACTCCTTCCCCTCTCTC 60.028 54.545 0.00 0.00 0.00 3.20
3707 3856 1.981495 CACAAACTCCTTCCCCTCTCT 59.019 52.381 0.00 0.00 0.00 3.10
3708 3857 1.700186 ACACAAACTCCTTCCCCTCTC 59.300 52.381 0.00 0.00 0.00 3.20
3709 3858 1.821088 ACACAAACTCCTTCCCCTCT 58.179 50.000 0.00 0.00 0.00 3.69
3710 3859 2.615747 GCTACACAAACTCCTTCCCCTC 60.616 54.545 0.00 0.00 0.00 4.30
3711 3860 1.351350 GCTACACAAACTCCTTCCCCT 59.649 52.381 0.00 0.00 0.00 4.79
3712 3861 1.613520 GGCTACACAAACTCCTTCCCC 60.614 57.143 0.00 0.00 0.00 4.81
3713 3862 1.351350 AGGCTACACAAACTCCTTCCC 59.649 52.381 0.00 0.00 0.00 3.97
3714 3863 2.861147 AGGCTACACAAACTCCTTCC 57.139 50.000 0.00 0.00 0.00 3.46
3715 3864 4.443621 GGATAGGCTACACAAACTCCTTC 58.556 47.826 0.00 0.00 0.00 3.46
3716 3865 3.118738 CGGATAGGCTACACAAACTCCTT 60.119 47.826 0.00 0.00 0.00 3.36
3717 3866 2.431057 CGGATAGGCTACACAAACTCCT 59.569 50.000 0.00 0.00 0.00 3.69
3718 3867 2.822764 CGGATAGGCTACACAAACTCC 58.177 52.381 0.00 0.00 0.00 3.85
3719 3868 2.202566 GCGGATAGGCTACACAAACTC 58.797 52.381 0.00 0.00 0.00 3.01
3720 3869 1.134491 GGCGGATAGGCTACACAAACT 60.134 52.381 0.00 0.00 42.90 2.66
3721 3870 1.296727 GGCGGATAGGCTACACAAAC 58.703 55.000 0.00 0.00 42.90 2.93
3722 3871 0.179468 GGGCGGATAGGCTACACAAA 59.821 55.000 0.00 0.00 45.89 2.83
3723 3872 0.978667 TGGGCGGATAGGCTACACAA 60.979 55.000 0.00 0.00 45.89 3.33
3724 3873 0.978667 TTGGGCGGATAGGCTACACA 60.979 55.000 0.00 0.00 45.89 3.72
3725 3874 0.532196 GTTGGGCGGATAGGCTACAC 60.532 60.000 0.00 0.00 45.89 2.90
3726 3875 1.692173 GGTTGGGCGGATAGGCTACA 61.692 60.000 0.00 0.00 45.89 2.74
3727 3876 1.070957 GGTTGGGCGGATAGGCTAC 59.929 63.158 0.00 0.00 45.89 3.58
3728 3877 1.383386 TGGTTGGGCGGATAGGCTA 60.383 57.895 0.00 0.00 45.89 3.93
3729 3878 2.690881 TGGTTGGGCGGATAGGCT 60.691 61.111 0.00 0.00 45.89 4.58
3730 3879 2.516225 GTGGTTGGGCGGATAGGC 60.516 66.667 0.00 0.00 45.91 3.93
3731 3880 1.052124 TAGGTGGTTGGGCGGATAGG 61.052 60.000 0.00 0.00 0.00 2.57
3732 3881 0.106149 GTAGGTGGTTGGGCGGATAG 59.894 60.000 0.00 0.00 0.00 2.08
3733 3882 0.618107 TGTAGGTGGTTGGGCGGATA 60.618 55.000 0.00 0.00 0.00 2.59
3734 3883 1.921346 TGTAGGTGGTTGGGCGGAT 60.921 57.895 0.00 0.00 0.00 4.18
3735 3884 2.527123 TGTAGGTGGTTGGGCGGA 60.527 61.111 0.00 0.00 0.00 5.54
3736 3885 2.359478 GTGTAGGTGGTTGGGCGG 60.359 66.667 0.00 0.00 0.00 6.13
3737 3886 1.671054 CTGTGTAGGTGGTTGGGCG 60.671 63.158 0.00 0.00 0.00 6.13
3738 3887 1.971695 GCTGTGTAGGTGGTTGGGC 60.972 63.158 0.00 0.00 0.00 5.36
3739 3888 0.981183 TAGCTGTGTAGGTGGTTGGG 59.019 55.000 0.00 0.00 35.90 4.12
3740 3889 1.346395 TGTAGCTGTGTAGGTGGTTGG 59.654 52.381 0.00 0.00 35.90 3.77
3741 3890 2.831685 TGTAGCTGTGTAGGTGGTTG 57.168 50.000 0.00 0.00 35.90 3.77
3742 3891 3.849563 TTTGTAGCTGTGTAGGTGGTT 57.150 42.857 0.00 0.00 35.90 3.67
3743 3892 3.496160 CCTTTTGTAGCTGTGTAGGTGGT 60.496 47.826 0.00 0.00 35.90 4.16
3744 3893 3.074412 CCTTTTGTAGCTGTGTAGGTGG 58.926 50.000 0.00 0.00 35.90 4.61
3745 3894 3.740115 ACCTTTTGTAGCTGTGTAGGTG 58.260 45.455 0.00 0.00 35.90 4.00
3746 3895 4.345837 TGTACCTTTTGTAGCTGTGTAGGT 59.654 41.667 0.00 5.57 38.10 3.08
3747 3896 4.890088 TGTACCTTTTGTAGCTGTGTAGG 58.110 43.478 0.00 0.00 0.00 3.18
3748 3897 5.107065 GCTTGTACCTTTTGTAGCTGTGTAG 60.107 44.000 0.00 0.00 0.00 2.74
3749 3898 4.753107 GCTTGTACCTTTTGTAGCTGTGTA 59.247 41.667 0.00 0.00 0.00 2.90
3750 3899 3.564225 GCTTGTACCTTTTGTAGCTGTGT 59.436 43.478 0.00 0.00 0.00 3.72
3751 3900 3.563808 TGCTTGTACCTTTTGTAGCTGTG 59.436 43.478 0.00 0.00 0.00 3.66
3752 3901 3.815809 TGCTTGTACCTTTTGTAGCTGT 58.184 40.909 0.00 0.00 0.00 4.40
3753 3902 4.436050 CGATGCTTGTACCTTTTGTAGCTG 60.436 45.833 0.00 0.00 0.00 4.24
3754 3903 3.684788 CGATGCTTGTACCTTTTGTAGCT 59.315 43.478 0.00 0.00 0.00 3.32
3755 3904 3.181510 CCGATGCTTGTACCTTTTGTAGC 60.182 47.826 0.00 0.00 0.00 3.58
3756 3905 3.181510 GCCGATGCTTGTACCTTTTGTAG 60.182 47.826 0.00 0.00 33.53 2.74
3757 3906 2.745281 GCCGATGCTTGTACCTTTTGTA 59.255 45.455 0.00 0.00 33.53 2.41
3758 3907 1.539827 GCCGATGCTTGTACCTTTTGT 59.460 47.619 0.00 0.00 33.53 2.83
3759 3908 1.135402 GGCCGATGCTTGTACCTTTTG 60.135 52.381 0.00 0.00 37.74 2.44
3760 3909 1.173913 GGCCGATGCTTGTACCTTTT 58.826 50.000 0.00 0.00 37.74 2.27
3761 3910 1.024579 CGGCCGATGCTTGTACCTTT 61.025 55.000 24.07 0.00 37.74 3.11
3762 3911 1.449601 CGGCCGATGCTTGTACCTT 60.450 57.895 24.07 0.00 37.74 3.50
3763 3912 1.895020 TTCGGCCGATGCTTGTACCT 61.895 55.000 31.56 0.00 37.74 3.08
3764 3913 1.429148 CTTCGGCCGATGCTTGTACC 61.429 60.000 31.56 0.00 37.74 3.34
3765 3914 2.006772 CTTCGGCCGATGCTTGTAC 58.993 57.895 31.56 0.00 37.74 2.90
3766 3915 1.813753 GCTTCGGCCGATGCTTGTA 60.814 57.895 42.38 22.87 40.65 2.41
3767 3916 3.127533 GCTTCGGCCGATGCTTGT 61.128 61.111 42.38 0.00 40.65 3.16
3780 3929 3.119096 GAACTGGACGGCGGCTTC 61.119 66.667 14.66 4.82 0.00 3.86
3781 3930 4.699522 GGAACTGGACGGCGGCTT 62.700 66.667 14.66 0.00 0.00 4.35
3783 3932 4.699522 AAGGAACTGGACGGCGGC 62.700 66.667 13.24 8.60 40.86 6.53
3784 3933 2.434359 GAAGGAACTGGACGGCGG 60.434 66.667 13.24 0.00 40.86 6.13
3785 3934 1.601419 TAGGAAGGAACTGGACGGCG 61.601 60.000 4.80 4.80 40.86 6.46
3786 3935 0.108281 GTAGGAAGGAACTGGACGGC 60.108 60.000 0.00 0.00 40.86 5.68
3787 3936 0.535797 GGTAGGAAGGAACTGGACGG 59.464 60.000 0.00 0.00 40.86 4.79
3788 3937 1.558233 AGGTAGGAAGGAACTGGACG 58.442 55.000 0.00 0.00 40.86 4.79
3789 3938 5.659971 TGTAATAGGTAGGAAGGAACTGGAC 59.340 44.000 0.00 0.00 40.86 4.02
3790 3939 5.845734 TGTAATAGGTAGGAAGGAACTGGA 58.154 41.667 0.00 0.00 40.86 3.86
3791 3940 6.749036 ATGTAATAGGTAGGAAGGAACTGG 57.251 41.667 0.00 0.00 40.86 4.00
3792 3941 6.992715 CCAATGTAATAGGTAGGAAGGAACTG 59.007 42.308 0.00 0.00 40.86 3.16
3794 3943 7.133133 TCCAATGTAATAGGTAGGAAGGAAC 57.867 40.000 0.00 0.00 0.00 3.62
3795 3944 6.906901 ACTCCAATGTAATAGGTAGGAAGGAA 59.093 38.462 0.00 0.00 0.00 3.36
3796 3945 6.449956 ACTCCAATGTAATAGGTAGGAAGGA 58.550 40.000 0.00 0.00 0.00 3.36
3797 3946 6.555360 AGACTCCAATGTAATAGGTAGGAAGG 59.445 42.308 0.00 0.00 0.00 3.46
3798 3947 7.604657 AGACTCCAATGTAATAGGTAGGAAG 57.395 40.000 0.00 0.00 0.00 3.46
3799 3948 8.287350 AGTAGACTCCAATGTAATAGGTAGGAA 58.713 37.037 0.00 0.00 0.00 3.36
3800 3949 7.724506 CAGTAGACTCCAATGTAATAGGTAGGA 59.275 40.741 0.00 0.00 0.00 2.94
3801 3950 7.887381 CAGTAGACTCCAATGTAATAGGTAGG 58.113 42.308 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.