Multiple sequence alignment - TraesCS1B01G029000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G029000 chr1B 100.000 3548 0 0 1 3548 14136799 14140346 0.000000e+00 6553.0
1 TraesCS1B01G029000 chr1B 85.792 366 42 7 3183 3548 7362296 7361941 2.590000e-101 379.0
2 TraesCS1B01G029000 chr1B 92.453 106 8 0 2601 2706 63547339 63547444 6.130000e-33 152.0
3 TraesCS1B01G029000 chr1A 88.487 2519 148 61 30 2500 11553721 11556145 0.000000e+00 2915.0
4 TraesCS1B01G029000 chr1A 80.235 511 62 21 3068 3548 109418659 109419160 7.290000e-92 348.0
5 TraesCS1B01G029000 chr1A 78.645 487 70 19 3087 3548 111990827 111991304 3.460000e-75 292.0
6 TraesCS1B01G029000 chr1D 86.535 2473 197 77 81 2501 9743781 9746169 0.000000e+00 2597.0
7 TraesCS1B01G029000 chr3A 79.424 695 128 12 1512 2197 701218971 701218283 8.910000e-131 477.0
8 TraesCS1B01G029000 chr3A 77.746 692 138 14 1513 2196 735976091 735975408 9.170000e-111 411.0
9 TraesCS1B01G029000 chr3A 86.383 235 30 2 1513 1746 531266324 531266557 4.550000e-64 255.0
10 TraesCS1B01G029000 chr3D 79.197 697 126 15 1512 2197 566080981 566081669 1.930000e-127 466.0
11 TraesCS1B01G029000 chr3D 77.155 696 135 20 1513 2196 604968072 604967389 2.000000e-102 383.0
12 TraesCS1B01G029000 chr3D 92.000 50 3 1 2539 2588 328547239 328547287 6.360000e-08 69.4
13 TraesCS1B01G029000 chr7D 82.171 516 69 16 3037 3544 580980177 580979677 4.230000e-114 422.0
14 TraesCS1B01G029000 chr7D 79.448 652 78 24 2904 3548 633504383 633503781 9.170000e-111 411.0
15 TraesCS1B01G029000 chr7D 82.013 467 60 17 3037 3495 580981162 580980712 3.340000e-100 375.0
16 TraesCS1B01G029000 chr7D 74.853 680 156 12 1512 2182 35850701 35850028 9.630000e-76 294.0
17 TraesCS1B01G029000 chr7D 90.756 119 9 2 2593 2710 61240845 61240962 1.320000e-34 158.0
18 TraesCS1B01G029000 chr3B 77.762 706 137 17 1504 2197 755806023 755806720 1.970000e-112 416.0
19 TraesCS1B01G029000 chr3B 80.123 488 66 17 3087 3548 41796349 41796831 5.680000e-88 335.0
20 TraesCS1B01G029000 chr3B 86.864 236 29 2 1512 1746 547111343 547111109 2.720000e-66 263.0
21 TraesCS1B01G029000 chr3B 82.000 200 27 8 3345 3539 670167701 670167506 1.020000e-35 161.0
22 TraesCS1B01G029000 chr3B 91.228 114 10 0 2593 2706 651739838 651739725 4.740000e-34 156.0
23 TraesCS1B01G029000 chr3B 89.076 119 10 2 2593 2711 402897788 402897903 1.030000e-30 145.0
24 TraesCS1B01G029000 chr4D 85.397 315 35 6 3242 3548 322677302 322677613 2.060000e-82 316.0
25 TraesCS1B01G029000 chr2A 75.862 580 122 12 1528 2095 686322214 686321641 2.700000e-71 279.0
26 TraesCS1B01G029000 chr2A 75.862 580 122 12 1528 2095 686523221 686522648 2.700000e-71 279.0
27 TraesCS1B01G029000 chr2A 75.862 580 122 12 1528 2095 686614094 686613521 2.700000e-71 279.0
28 TraesCS1B01G029000 chr2B 75.492 559 115 18 1546 2093 443147939 443147392 1.630000e-63 254.0
29 TraesCS1B01G029000 chr2B 89.831 118 12 0 2593 2710 6740165 6740048 6.130000e-33 152.0
30 TraesCS1B01G029000 chr2B 89.655 116 12 0 2593 2708 371166321 371166206 7.940000e-32 148.0
31 TraesCS1B01G029000 chr2D 83.575 207 30 4 3345 3548 202746199 202745994 1.300000e-44 191.0
32 TraesCS1B01G029000 chr6A 90.083 121 11 1 2593 2712 149935388 149935268 4.740000e-34 156.0
33 TraesCS1B01G029000 chr7B 86.923 130 17 0 2593 2722 88565723 88565852 2.850000e-31 147.0
34 TraesCS1B01G029000 chr4B 89.565 115 12 0 2593 2707 471336241 471336355 2.850000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G029000 chr1B 14136799 14140346 3547 False 6553.0 6553 100.000 1 3548 1 chr1B.!!$F1 3547
1 TraesCS1B01G029000 chr1A 11553721 11556145 2424 False 2915.0 2915 88.487 30 2500 1 chr1A.!!$F1 2470
2 TraesCS1B01G029000 chr1A 109418659 109419160 501 False 348.0 348 80.235 3068 3548 1 chr1A.!!$F2 480
3 TraesCS1B01G029000 chr1D 9743781 9746169 2388 False 2597.0 2597 86.535 81 2501 1 chr1D.!!$F1 2420
4 TraesCS1B01G029000 chr3A 701218283 701218971 688 True 477.0 477 79.424 1512 2197 1 chr3A.!!$R1 685
5 TraesCS1B01G029000 chr3A 735975408 735976091 683 True 411.0 411 77.746 1513 2196 1 chr3A.!!$R2 683
6 TraesCS1B01G029000 chr3D 566080981 566081669 688 False 466.0 466 79.197 1512 2197 1 chr3D.!!$F2 685
7 TraesCS1B01G029000 chr3D 604967389 604968072 683 True 383.0 383 77.155 1513 2196 1 chr3D.!!$R1 683
8 TraesCS1B01G029000 chr7D 633503781 633504383 602 True 411.0 411 79.448 2904 3548 1 chr7D.!!$R2 644
9 TraesCS1B01G029000 chr7D 580979677 580981162 1485 True 398.5 422 82.092 3037 3544 2 chr7D.!!$R3 507
10 TraesCS1B01G029000 chr7D 35850028 35850701 673 True 294.0 294 74.853 1512 2182 1 chr7D.!!$R1 670
11 TraesCS1B01G029000 chr3B 755806023 755806720 697 False 416.0 416 77.762 1504 2197 1 chr3B.!!$F3 693
12 TraesCS1B01G029000 chr2A 686321641 686322214 573 True 279.0 279 75.862 1528 2095 1 chr2A.!!$R1 567
13 TraesCS1B01G029000 chr2A 686522648 686523221 573 True 279.0 279 75.862 1528 2095 1 chr2A.!!$R2 567
14 TraesCS1B01G029000 chr2A 686613521 686614094 573 True 279.0 279 75.862 1528 2095 1 chr2A.!!$R3 567
15 TraesCS1B01G029000 chr2B 443147392 443147939 547 True 254.0 254 75.492 1546 2093 1 chr2B.!!$R3 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1123 0.108804 CACACGCACCCTAGTACCAG 60.109 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 2714 0.102481 TTAGATGGGCGACGAGAAGC 59.898 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.926313 ACAATCTCTTTGTGTCTAGTAGTCC 58.074 40.000 0.00 0.00 46.80 3.85
130 148 1.593006 CGCGGTGCCAAGATTAGTTAG 59.407 52.381 0.00 0.00 0.00 2.34
168 186 0.109597 CAACGCATTGACAAGCCCTC 60.110 55.000 0.00 0.00 38.15 4.30
184 202 1.078759 CCTCGTCTTCACGCCATGTC 61.079 60.000 0.00 0.00 46.28 3.06
185 203 0.109086 CTCGTCTTCACGCCATGTCT 60.109 55.000 0.00 0.00 46.28 3.41
186 204 0.109272 TCGTCTTCACGCCATGTCTC 60.109 55.000 0.00 0.00 46.28 3.36
187 205 1.406219 CGTCTTCACGCCATGTCTCG 61.406 60.000 0.00 0.00 39.69 4.04
250 280 3.116531 GCACCAACCCTACGTCGC 61.117 66.667 0.00 0.00 0.00 5.19
251 281 2.340809 CACCAACCCTACGTCGCA 59.659 61.111 0.00 0.00 0.00 5.10
253 283 1.079405 ACCAACCCTACGTCGCATG 60.079 57.895 0.00 0.00 0.00 4.06
255 285 2.125269 AACCCTACGTCGCATGGC 60.125 61.111 0.00 0.00 0.00 4.40
257 287 2.890474 CCCTACGTCGCATGGCAC 60.890 66.667 0.00 0.00 0.00 5.01
320 350 0.321653 AGATGGCCAAGTCGACCAAC 60.322 55.000 10.96 1.26 36.94 3.77
342 372 1.852157 AATGGGCCGAGAGCTTGGAA 61.852 55.000 7.98 0.00 43.05 3.53
353 383 4.645809 CTTGGAAGCAGGGTAGCC 57.354 61.111 1.60 1.60 34.23 3.93
354 384 1.685224 CTTGGAAGCAGGGTAGCCA 59.315 57.895 14.62 0.00 34.23 4.75
355 385 0.393537 CTTGGAAGCAGGGTAGCCAG 60.394 60.000 14.62 6.33 34.23 4.85
357 387 2.512515 GAAGCAGGGTAGCCAGCG 60.513 66.667 20.89 6.69 32.62 5.18
378 408 4.327357 GCGGCTAGTGCATATACACAATAG 59.673 45.833 8.77 5.92 43.23 1.73
380 410 6.156519 CGGCTAGTGCATATACACAATAGAA 58.843 40.000 8.77 0.00 43.23 2.10
381 411 6.645003 CGGCTAGTGCATATACACAATAGAAA 59.355 38.462 8.77 0.00 43.23 2.52
387 417 9.507329 AGTGCATATACACAATAGAAAATAGGG 57.493 33.333 8.77 0.00 43.23 3.53
412 445 5.880332 ACTAGATACATGGTCGTTTGCATTT 59.120 36.000 0.00 0.00 0.00 2.32
413 446 5.235305 AGATACATGGTCGTTTGCATTTC 57.765 39.130 0.00 0.00 0.00 2.17
438 471 2.305928 GCATGTTATGTATGGGGCACA 58.694 47.619 0.00 0.00 0.00 4.57
478 515 3.005898 CGACGCCATTGACCATCG 58.994 61.111 0.00 0.00 0.00 3.84
479 516 1.518352 CGACGCCATTGACCATCGA 60.518 57.895 0.00 0.00 0.00 3.59
481 518 0.861837 GACGCCATTGACCATCGATC 59.138 55.000 0.00 0.00 0.00 3.69
483 520 0.250038 CGCCATTGACCATCGATCCT 60.250 55.000 0.00 0.00 0.00 3.24
500 537 4.753610 CGATCCTACAGTTATCCACGTAGA 59.246 45.833 0.00 0.00 35.89 2.59
509 546 5.398711 CAGTTATCCACGTAGAAGCGTAATC 59.601 44.000 0.00 0.00 43.83 1.75
515 552 2.159282 ACGTAGAAGCGTAATCCACCAG 60.159 50.000 0.00 0.00 43.83 4.00
572 623 0.749454 CTTCGCAGGGAGAAATGGGG 60.749 60.000 0.00 0.00 0.00 4.96
573 624 1.204786 TTCGCAGGGAGAAATGGGGA 61.205 55.000 0.00 0.00 0.00 4.81
574 625 1.204786 TCGCAGGGAGAAATGGGGAA 61.205 55.000 0.00 0.00 0.00 3.97
626 678 4.748503 TTTTCACGTCGAAGCGTATATG 57.251 40.909 0.00 0.00 43.83 1.78
633 686 3.789756 CGTCGAAGCGTATATGTTTGACT 59.210 43.478 16.90 0.00 0.00 3.41
634 687 4.086227 CGTCGAAGCGTATATGTTTGACTC 60.086 45.833 16.90 0.04 0.00 3.36
635 688 5.035443 GTCGAAGCGTATATGTTTGACTCT 58.965 41.667 14.30 0.00 0.00 3.24
636 689 5.171695 GTCGAAGCGTATATGTTTGACTCTC 59.828 44.000 14.30 0.00 0.00 3.20
637 690 5.034797 CGAAGCGTATATGTTTGACTCTCA 58.965 41.667 0.00 0.00 0.00 3.27
638 691 5.515270 CGAAGCGTATATGTTTGACTCTCAA 59.485 40.000 0.00 0.00 34.03 3.02
639 692 6.291322 CGAAGCGTATATGTTTGACTCTCAAG 60.291 42.308 0.00 0.00 37.70 3.02
666 740 1.822990 CTGGCTTGGCACTTGATTGAT 59.177 47.619 0.00 0.00 0.00 2.57
667 741 2.232941 CTGGCTTGGCACTTGATTGATT 59.767 45.455 0.00 0.00 0.00 2.57
668 742 2.028839 TGGCTTGGCACTTGATTGATTG 60.029 45.455 0.00 0.00 0.00 2.67
669 743 2.231964 GGCTTGGCACTTGATTGATTGA 59.768 45.455 0.00 0.00 0.00 2.57
670 744 3.118884 GGCTTGGCACTTGATTGATTGAT 60.119 43.478 0.00 0.00 0.00 2.57
671 745 3.863424 GCTTGGCACTTGATTGATTGATG 59.137 43.478 0.00 0.00 0.00 3.07
672 746 3.513680 TGGCACTTGATTGATTGATGC 57.486 42.857 0.00 0.00 0.00 3.91
673 747 2.826725 TGGCACTTGATTGATTGATGCA 59.173 40.909 0.00 0.00 33.24 3.96
674 748 3.258622 TGGCACTTGATTGATTGATGCAA 59.741 39.130 0.00 0.00 33.24 4.08
675 749 3.863424 GGCACTTGATTGATTGATGCAAG 59.137 43.478 0.00 0.00 41.15 4.01
711 792 6.138761 GCATGCAATAATTACTCTGTGCTAC 58.861 40.000 14.21 0.00 33.19 3.58
733 818 1.390123 CACATCACGTTCGGTAGCTTG 59.610 52.381 0.00 0.00 0.00 4.01
745 830 1.338769 GGTAGCTTGGCGAGGAGAAAA 60.339 52.381 3.44 0.00 0.00 2.29
746 831 2.633488 GTAGCTTGGCGAGGAGAAAAT 58.367 47.619 3.44 0.00 0.00 1.82
747 832 3.431766 GGTAGCTTGGCGAGGAGAAAATA 60.432 47.826 3.44 0.00 0.00 1.40
748 833 2.911484 AGCTTGGCGAGGAGAAAATAG 58.089 47.619 3.44 0.00 0.00 1.73
749 834 1.332065 GCTTGGCGAGGAGAAAATAGC 59.668 52.381 3.44 0.00 0.00 2.97
750 835 2.911484 CTTGGCGAGGAGAAAATAGCT 58.089 47.619 0.00 0.00 0.00 3.32
751 836 3.741388 GCTTGGCGAGGAGAAAATAGCTA 60.741 47.826 3.44 0.00 0.00 3.32
752 837 3.735237 TGGCGAGGAGAAAATAGCTAG 57.265 47.619 0.00 0.00 0.00 3.42
753 838 3.031736 TGGCGAGGAGAAAATAGCTAGT 58.968 45.455 0.00 0.00 0.00 2.57
754 839 3.451178 TGGCGAGGAGAAAATAGCTAGTT 59.549 43.478 0.00 0.00 0.00 2.24
755 840 3.804873 GGCGAGGAGAAAATAGCTAGTTG 59.195 47.826 7.28 0.00 0.00 3.16
756 841 4.441634 GGCGAGGAGAAAATAGCTAGTTGA 60.442 45.833 7.28 0.00 0.00 3.18
757 842 4.742659 GCGAGGAGAAAATAGCTAGTTGAG 59.257 45.833 7.28 0.00 0.00 3.02
758 843 5.450688 GCGAGGAGAAAATAGCTAGTTGAGA 60.451 44.000 7.28 0.00 0.00 3.27
759 844 6.565234 CGAGGAGAAAATAGCTAGTTGAGAA 58.435 40.000 7.28 0.00 0.00 2.87
760 845 6.695278 CGAGGAGAAAATAGCTAGTTGAGAAG 59.305 42.308 7.28 0.00 0.00 2.85
761 846 6.345298 AGGAGAAAATAGCTAGTTGAGAAGC 58.655 40.000 7.28 0.00 39.08 3.86
762 847 6.070538 AGGAGAAAATAGCTAGTTGAGAAGCA 60.071 38.462 7.28 0.00 41.32 3.91
763 848 6.257630 GGAGAAAATAGCTAGTTGAGAAGCAG 59.742 42.308 7.28 0.00 41.32 4.24
764 849 6.112058 AGAAAATAGCTAGTTGAGAAGCAGG 58.888 40.000 7.28 0.00 41.32 4.85
765 850 5.683876 AAATAGCTAGTTGAGAAGCAGGA 57.316 39.130 5.48 0.00 41.32 3.86
766 851 5.683876 AATAGCTAGTTGAGAAGCAGGAA 57.316 39.130 0.00 0.00 41.32 3.36
767 852 5.885449 ATAGCTAGTTGAGAAGCAGGAAT 57.115 39.130 0.00 0.00 41.32 3.01
768 853 6.985653 ATAGCTAGTTGAGAAGCAGGAATA 57.014 37.500 0.00 0.00 41.32 1.75
769 854 5.683876 AGCTAGTTGAGAAGCAGGAATAA 57.316 39.130 0.00 0.00 41.32 1.40
770 855 5.423886 AGCTAGTTGAGAAGCAGGAATAAC 58.576 41.667 0.00 0.00 41.32 1.89
776 861 5.016051 TGAGAAGCAGGAATAACTAGCTG 57.984 43.478 0.00 0.00 35.42 4.24
777 862 4.711846 TGAGAAGCAGGAATAACTAGCTGA 59.288 41.667 0.00 0.00 35.42 4.26
794 885 3.753070 GACGATCGGTCACCTCGCC 62.753 68.421 20.98 0.00 45.36 5.54
795 886 3.518998 CGATCGGTCACCTCGCCT 61.519 66.667 7.38 0.00 0.00 5.52
837 959 1.593006 CAATAATGACCGTCTCGTGGC 59.407 52.381 0.00 0.00 0.00 5.01
937 1059 1.079503 GCTTTGCCTCTAGGTCAACG 58.920 55.000 0.00 2.43 37.57 4.10
950 1072 1.540580 GGTCAACGCCCCTAGCTAATC 60.541 57.143 0.00 0.00 40.39 1.75
974 1104 1.664965 CGCCCAGCCGCTATAAGAC 60.665 63.158 0.00 0.00 0.00 3.01
979 1109 1.200483 CAGCCGCTATAAGACACACG 58.800 55.000 0.00 0.00 0.00 4.49
993 1123 0.108804 CACACGCACCCTAGTACCAG 60.109 60.000 0.00 0.00 0.00 4.00
995 1125 0.456221 CACGCACCCTAGTACCAGAG 59.544 60.000 0.00 0.00 0.00 3.35
997 1127 1.320344 CGCACCCTAGTACCAGAGCA 61.320 60.000 0.00 0.00 0.00 4.26
1000 1130 1.899814 CACCCTAGTACCAGAGCAACA 59.100 52.381 0.00 0.00 0.00 3.33
1001 1131 1.900486 ACCCTAGTACCAGAGCAACAC 59.100 52.381 0.00 0.00 0.00 3.32
1041 1175 2.634940 AGAGCTAGCCAGAGAAACACAA 59.365 45.455 12.13 0.00 0.00 3.33
1042 1176 3.071602 AGAGCTAGCCAGAGAAACACAAA 59.928 43.478 12.13 0.00 0.00 2.83
1043 1177 3.142174 AGCTAGCCAGAGAAACACAAAC 58.858 45.455 12.13 0.00 0.00 2.93
1044 1178 3.142174 GCTAGCCAGAGAAACACAAACT 58.858 45.455 2.29 0.00 0.00 2.66
1045 1179 3.187432 GCTAGCCAGAGAAACACAAACTC 59.813 47.826 2.29 0.00 0.00 3.01
1046 1180 3.281727 AGCCAGAGAAACACAAACTCA 57.718 42.857 0.00 0.00 33.69 3.41
1047 1181 3.825328 AGCCAGAGAAACACAAACTCAT 58.175 40.909 0.00 0.00 33.69 2.90
1048 1182 3.817647 AGCCAGAGAAACACAAACTCATC 59.182 43.478 0.00 0.00 33.69 2.92
1049 1183 3.817647 GCCAGAGAAACACAAACTCATCT 59.182 43.478 0.00 0.00 33.69 2.90
1051 1185 5.645497 GCCAGAGAAACACAAACTCATCTAT 59.355 40.000 0.00 0.00 33.69 1.98
1053 1187 6.314896 CCAGAGAAACACAAACTCATCTATCC 59.685 42.308 0.00 0.00 33.69 2.59
1054 1188 6.875726 CAGAGAAACACAAACTCATCTATCCA 59.124 38.462 0.00 0.00 33.69 3.41
1055 1189 7.064371 CAGAGAAACACAAACTCATCTATCCAG 59.936 40.741 0.00 0.00 33.69 3.86
1059 1193 5.503927 ACACAAACTCATCTATCCAGCATT 58.496 37.500 0.00 0.00 0.00 3.56
1064 1198 4.712476 ACTCATCTATCCAGCATTCAACC 58.288 43.478 0.00 0.00 0.00 3.77
1307 1441 0.600255 CCGACACCAAGAAGAAGCGT 60.600 55.000 0.00 0.00 0.00 5.07
1401 1535 5.125417 ACCTTCTGCCGTACGTAGTTTATAA 59.875 40.000 15.21 1.91 37.78 0.98
1402 1536 5.684626 CCTTCTGCCGTACGTAGTTTATAAG 59.315 44.000 15.21 10.28 37.78 1.73
1403 1537 4.601019 TCTGCCGTACGTAGTTTATAAGC 58.399 43.478 15.21 6.69 37.78 3.09
1404 1538 4.096231 TCTGCCGTACGTAGTTTATAAGCA 59.904 41.667 15.21 10.98 37.78 3.91
1405 1539 4.104776 TGCCGTACGTAGTTTATAAGCAC 58.895 43.478 15.21 0.00 37.78 4.40
1406 1540 4.104776 GCCGTACGTAGTTTATAAGCACA 58.895 43.478 15.21 0.00 37.78 4.57
1407 1541 4.562394 GCCGTACGTAGTTTATAAGCACAA 59.438 41.667 15.21 0.00 37.78 3.33
1478 1616 6.549912 TCACACATGCATATGCTAATCTTC 57.450 37.500 27.13 0.00 42.66 2.87
1479 1617 6.293698 TCACACATGCATATGCTAATCTTCT 58.706 36.000 27.13 1.16 42.66 2.85
1480 1618 6.769341 TCACACATGCATATGCTAATCTTCTT 59.231 34.615 27.13 1.67 42.66 2.52
1481 1619 6.856426 CACACATGCATATGCTAATCTTCTTG 59.144 38.462 27.13 13.23 42.66 3.02
1482 1620 5.856986 CACATGCATATGCTAATCTTCTTGC 59.143 40.000 27.13 0.00 42.66 4.01
1595 1734 2.038557 ACAACTTCTACTTCCACGGCAT 59.961 45.455 0.00 0.00 0.00 4.40
1677 1819 1.530655 CAACCACAACCCCTCCACC 60.531 63.158 0.00 0.00 0.00 4.61
1821 1966 2.268920 GAGCGCATTGACCTCCCA 59.731 61.111 11.47 0.00 0.00 4.37
1825 1970 2.763215 GCATTGACCTCCCACCCA 59.237 61.111 0.00 0.00 0.00 4.51
2253 2410 1.745115 CATGGTCACCGACGCCAAT 60.745 57.895 0.00 0.00 35.74 3.16
2286 2443 2.649331 TCGATCGAGGAGTCAAAACC 57.351 50.000 15.15 0.00 0.00 3.27
2287 2444 1.890489 TCGATCGAGGAGTCAAAACCA 59.110 47.619 15.15 0.00 0.00 3.67
2288 2445 2.094700 TCGATCGAGGAGTCAAAACCAG 60.095 50.000 15.15 0.00 0.00 4.00
2289 2446 2.003301 GATCGAGGAGTCAAAACCAGC 58.997 52.381 0.00 0.00 0.00 4.85
2290 2447 0.034896 TCGAGGAGTCAAAACCAGCC 59.965 55.000 0.00 0.00 0.00 4.85
2291 2448 0.955919 CGAGGAGTCAAAACCAGCCC 60.956 60.000 0.00 0.00 0.00 5.19
2292 2449 0.955919 GAGGAGTCAAAACCAGCCCG 60.956 60.000 0.00 0.00 0.00 6.13
2293 2450 1.971695 GGAGTCAAAACCAGCCCGG 60.972 63.158 0.00 0.00 42.50 5.73
2440 2597 3.476552 TGACCATCCTGGCGATTAATTC 58.523 45.455 0.00 0.00 42.67 2.17
2568 2725 2.703190 CAAGTATTGCTTCTCGTCGC 57.297 50.000 0.00 0.00 40.39 5.19
2569 2726 1.324736 CAAGTATTGCTTCTCGTCGCC 59.675 52.381 0.00 0.00 40.39 5.54
2570 2727 0.179108 AGTATTGCTTCTCGTCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
2571 2728 0.459585 GTATTGCTTCTCGTCGCCCA 60.460 55.000 0.00 0.00 0.00 5.36
2572 2729 0.464036 TATTGCTTCTCGTCGCCCAT 59.536 50.000 0.00 0.00 0.00 4.00
2573 2730 0.811616 ATTGCTTCTCGTCGCCCATC 60.812 55.000 0.00 0.00 0.00 3.51
2574 2731 1.888436 TTGCTTCTCGTCGCCCATCT 61.888 55.000 0.00 0.00 0.00 2.90
2575 2732 1.035385 TGCTTCTCGTCGCCCATCTA 61.035 55.000 0.00 0.00 0.00 1.98
2576 2733 0.102481 GCTTCTCGTCGCCCATCTAA 59.898 55.000 0.00 0.00 0.00 2.10
2577 2734 1.470979 GCTTCTCGTCGCCCATCTAAA 60.471 52.381 0.00 0.00 0.00 1.85
2578 2735 2.888594 CTTCTCGTCGCCCATCTAAAA 58.111 47.619 0.00 0.00 0.00 1.52
2579 2736 3.259064 CTTCTCGTCGCCCATCTAAAAA 58.741 45.455 0.00 0.00 0.00 1.94
2580 2737 3.536956 TCTCGTCGCCCATCTAAAAAT 57.463 42.857 0.00 0.00 0.00 1.82
2581 2738 3.869065 TCTCGTCGCCCATCTAAAAATT 58.131 40.909 0.00 0.00 0.00 1.82
2582 2739 5.013568 TCTCGTCGCCCATCTAAAAATTA 57.986 39.130 0.00 0.00 0.00 1.40
2583 2740 4.807304 TCTCGTCGCCCATCTAAAAATTAC 59.193 41.667 0.00 0.00 0.00 1.89
2584 2741 3.872771 TCGTCGCCCATCTAAAAATTACC 59.127 43.478 0.00 0.00 0.00 2.85
2585 2742 3.002965 CGTCGCCCATCTAAAAATTACCC 59.997 47.826 0.00 0.00 0.00 3.69
2586 2743 4.204799 GTCGCCCATCTAAAAATTACCCT 58.795 43.478 0.00 0.00 0.00 4.34
2587 2744 4.275196 GTCGCCCATCTAAAAATTACCCTC 59.725 45.833 0.00 0.00 0.00 4.30
2588 2745 4.080243 TCGCCCATCTAAAAATTACCCTCA 60.080 41.667 0.00 0.00 0.00 3.86
2589 2746 4.642885 CGCCCATCTAAAAATTACCCTCAA 59.357 41.667 0.00 0.00 0.00 3.02
2590 2747 5.126384 CGCCCATCTAAAAATTACCCTCAAA 59.874 40.000 0.00 0.00 0.00 2.69
2591 2748 6.573434 GCCCATCTAAAAATTACCCTCAAAG 58.427 40.000 0.00 0.00 0.00 2.77
2592 2749 6.154534 GCCCATCTAAAAATTACCCTCAAAGT 59.845 38.462 0.00 0.00 0.00 2.66
2593 2750 7.630728 GCCCATCTAAAAATTACCCTCAAAGTC 60.631 40.741 0.00 0.00 0.00 3.01
2594 2751 7.147897 CCCATCTAAAAATTACCCTCAAAGTCC 60.148 40.741 0.00 0.00 0.00 3.85
2595 2752 7.147897 CCATCTAAAAATTACCCTCAAAGTCCC 60.148 40.741 0.00 0.00 0.00 4.46
2596 2753 7.098845 TCTAAAAATTACCCTCAAAGTCCCT 57.901 36.000 0.00 0.00 0.00 4.20
2597 2754 7.173032 TCTAAAAATTACCCTCAAAGTCCCTC 58.827 38.462 0.00 0.00 0.00 4.30
2598 2755 5.600669 AAAATTACCCTCAAAGTCCCTCT 57.399 39.130 0.00 0.00 0.00 3.69
2599 2756 4.846168 AATTACCCTCAAAGTCCCTCTC 57.154 45.455 0.00 0.00 0.00 3.20
2600 2757 3.562108 TTACCCTCAAAGTCCCTCTCT 57.438 47.619 0.00 0.00 0.00 3.10
2601 2758 1.945580 ACCCTCAAAGTCCCTCTCTC 58.054 55.000 0.00 0.00 0.00 3.20
2602 2759 1.199615 CCCTCAAAGTCCCTCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
2603 2760 0.820871 CCTCAAAGTCCCTCTCTCCG 59.179 60.000 0.00 0.00 0.00 4.63
2604 2761 0.820871 CTCAAAGTCCCTCTCTCCGG 59.179 60.000 0.00 0.00 0.00 5.14
2605 2762 0.408309 TCAAAGTCCCTCTCTCCGGA 59.592 55.000 2.93 2.93 0.00 5.14
2606 2763 1.203137 TCAAAGTCCCTCTCTCCGGAA 60.203 52.381 5.23 0.00 0.00 4.30
2607 2764 1.623811 CAAAGTCCCTCTCTCCGGAAA 59.376 52.381 5.23 0.00 0.00 3.13
2608 2765 2.237392 CAAAGTCCCTCTCTCCGGAAAT 59.763 50.000 5.23 0.00 0.00 2.17
2609 2766 3.399952 AAGTCCCTCTCTCCGGAAATA 57.600 47.619 5.23 0.00 0.00 1.40
2610 2767 2.668625 AGTCCCTCTCTCCGGAAATAC 58.331 52.381 5.23 0.00 0.00 1.89
2611 2768 2.245287 AGTCCCTCTCTCCGGAAATACT 59.755 50.000 5.23 0.00 0.00 2.12
2612 2769 3.032459 GTCCCTCTCTCCGGAAATACTT 58.968 50.000 5.23 0.00 0.00 2.24
2613 2770 3.031736 TCCCTCTCTCCGGAAATACTTG 58.968 50.000 5.23 0.00 0.00 3.16
2614 2771 2.766828 CCCTCTCTCCGGAAATACTTGT 59.233 50.000 5.23 0.00 0.00 3.16
2615 2772 3.181474 CCCTCTCTCCGGAAATACTTGTC 60.181 52.174 5.23 0.00 0.00 3.18
2616 2773 3.489398 CCTCTCTCCGGAAATACTTGTCG 60.489 52.174 5.23 0.00 0.00 4.35
2617 2774 2.426024 TCTCTCCGGAAATACTTGTCGG 59.574 50.000 5.23 0.00 41.80 4.79
2618 2775 2.426024 CTCTCCGGAAATACTTGTCGGA 59.574 50.000 5.23 0.00 46.06 4.55
2620 2777 3.241067 TCCGGAAATACTTGTCGGAAG 57.759 47.619 0.00 0.00 45.40 3.46
2621 2778 2.827322 TCCGGAAATACTTGTCGGAAGA 59.173 45.455 0.00 0.00 45.40 2.87
2622 2779 3.258872 TCCGGAAATACTTGTCGGAAGAA 59.741 43.478 0.00 0.00 45.40 2.52
2623 2780 4.081309 TCCGGAAATACTTGTCGGAAGAAT 60.081 41.667 0.00 0.00 45.40 2.40
2624 2781 4.034048 CCGGAAATACTTGTCGGAAGAATG 59.966 45.833 0.00 0.00 45.01 2.67
2625 2782 4.034048 CGGAAATACTTGTCGGAAGAATGG 59.966 45.833 2.55 0.00 45.01 3.16
2626 2783 5.183228 GGAAATACTTGTCGGAAGAATGGA 58.817 41.667 2.55 0.00 45.01 3.41
2627 2784 5.823045 GGAAATACTTGTCGGAAGAATGGAT 59.177 40.000 2.55 0.00 45.01 3.41
2628 2785 6.238484 GGAAATACTTGTCGGAAGAATGGATG 60.238 42.308 2.55 0.00 45.01 3.51
2629 2786 3.703001 ACTTGTCGGAAGAATGGATGT 57.297 42.857 2.55 0.00 45.01 3.06
2630 2787 4.819105 ACTTGTCGGAAGAATGGATGTA 57.181 40.909 2.55 0.00 45.01 2.29
2631 2788 5.359194 ACTTGTCGGAAGAATGGATGTAT 57.641 39.130 2.55 0.00 45.01 2.29
2632 2789 5.118990 ACTTGTCGGAAGAATGGATGTATG 58.881 41.667 2.55 0.00 45.01 2.39
2633 2790 4.753516 TGTCGGAAGAATGGATGTATGT 57.246 40.909 0.00 0.00 45.01 2.29
2634 2791 5.862678 TGTCGGAAGAATGGATGTATGTA 57.137 39.130 0.00 0.00 45.01 2.29
2635 2792 5.842907 TGTCGGAAGAATGGATGTATGTAG 58.157 41.667 0.00 0.00 45.01 2.74
2636 2793 5.596772 TGTCGGAAGAATGGATGTATGTAGA 59.403 40.000 0.00 0.00 45.01 2.59
2637 2794 6.267699 TGTCGGAAGAATGGATGTATGTAGAT 59.732 38.462 0.00 0.00 45.01 1.98
2638 2795 6.587990 GTCGGAAGAATGGATGTATGTAGATG 59.412 42.308 0.00 0.00 45.01 2.90
2639 2796 6.267699 TCGGAAGAATGGATGTATGTAGATGT 59.732 38.462 0.00 0.00 37.03 3.06
2640 2797 7.450323 TCGGAAGAATGGATGTATGTAGATGTA 59.550 37.037 0.00 0.00 37.03 2.29
2641 2798 8.253810 CGGAAGAATGGATGTATGTAGATGTAT 58.746 37.037 0.00 0.00 0.00 2.29
2642 2799 9.950496 GGAAGAATGGATGTATGTAGATGTATT 57.050 33.333 0.00 0.00 0.00 1.89
2681 2838 9.369904 ACATACATTTTTATGCATTTCTCCAAC 57.630 29.630 3.54 0.00 33.37 3.77
2682 2839 9.368674 CATACATTTTTATGCATTTCTCCAACA 57.631 29.630 3.54 0.00 0.00 3.33
2683 2840 9.941325 ATACATTTTTATGCATTTCTCCAACAA 57.059 25.926 3.54 0.00 0.00 2.83
2684 2841 8.674263 ACATTTTTATGCATTTCTCCAACAAA 57.326 26.923 3.54 0.00 0.00 2.83
2685 2842 9.287373 ACATTTTTATGCATTTCTCCAACAAAT 57.713 25.926 3.54 0.00 0.00 2.32
2690 2847 9.598517 TTTATGCATTTCTCCAACAAATATTCC 57.401 29.630 3.54 0.00 0.00 3.01
2691 2848 5.976458 TGCATTTCTCCAACAAATATTCCC 58.024 37.500 0.00 0.00 0.00 3.97
2692 2849 5.043248 GCATTTCTCCAACAAATATTCCCG 58.957 41.667 0.00 0.00 0.00 5.14
2693 2850 4.712122 TTTCTCCAACAAATATTCCCGC 57.288 40.909 0.00 0.00 0.00 6.13
2694 2851 3.358111 TCTCCAACAAATATTCCCGCA 57.642 42.857 0.00 0.00 0.00 5.69
2695 2852 3.013921 TCTCCAACAAATATTCCCGCAC 58.986 45.455 0.00 0.00 0.00 5.34
2696 2853 1.740585 TCCAACAAATATTCCCGCACG 59.259 47.619 0.00 0.00 0.00 5.34
2697 2854 1.202245 CCAACAAATATTCCCGCACGG 60.202 52.381 1.02 1.02 0.00 4.94
2698 2855 1.740585 CAACAAATATTCCCGCACGGA 59.259 47.619 11.42 0.00 39.68 4.69
2699 2856 1.663695 ACAAATATTCCCGCACGGAG 58.336 50.000 11.42 0.69 43.39 4.63
2700 2857 0.944386 CAAATATTCCCGCACGGAGG 59.056 55.000 11.42 0.00 43.39 4.30
2707 2864 4.169271 CCGCACGGAGGGAGTATA 57.831 61.111 2.01 0.00 37.50 1.47
2708 2865 2.654802 CCGCACGGAGGGAGTATAT 58.345 57.895 2.01 0.00 37.50 0.86
2709 2866 1.830279 CCGCACGGAGGGAGTATATA 58.170 55.000 2.01 0.00 37.50 0.86
2710 2867 2.376109 CCGCACGGAGGGAGTATATAT 58.624 52.381 2.01 0.00 37.50 0.86
2711 2868 2.758979 CCGCACGGAGGGAGTATATATT 59.241 50.000 2.01 0.00 37.50 1.28
2712 2869 3.949754 CCGCACGGAGGGAGTATATATTA 59.050 47.826 2.01 0.00 37.50 0.98
2713 2870 4.201990 CCGCACGGAGGGAGTATATATTAC 60.202 50.000 2.01 0.00 37.50 1.89
2714 2871 4.201990 CGCACGGAGGGAGTATATATTACC 60.202 50.000 0.00 0.00 0.00 2.85
2715 2872 4.099113 GCACGGAGGGAGTATATATTACCC 59.901 50.000 2.88 8.00 40.71 3.69
2716 2873 4.337555 CACGGAGGGAGTATATATTACCCG 59.662 50.000 2.88 3.71 44.57 5.28
2717 2874 3.317430 CGGAGGGAGTATATATTACCCGC 59.683 52.174 2.88 9.20 44.57 6.13
2718 2875 4.544683 GGAGGGAGTATATATTACCCGCT 58.455 47.826 17.60 8.26 44.57 5.52
2719 2876 5.688500 CGGAGGGAGTATATATTACCCGCTA 60.689 48.000 17.60 0.00 44.57 4.26
2720 2877 6.313324 GGAGGGAGTATATATTACCCGCTAT 58.687 44.000 17.60 4.46 44.57 2.97
2721 2878 6.208994 GGAGGGAGTATATATTACCCGCTATG 59.791 46.154 17.60 0.00 44.57 2.23
2722 2879 5.539193 AGGGAGTATATATTACCCGCTATGC 59.461 44.000 2.88 0.00 44.57 3.14
2723 2880 5.279356 GGGAGTATATATTACCCGCTATGCC 60.279 48.000 0.00 0.00 0.00 4.40
2724 2881 5.449107 AGTATATATTACCCGCTATGCCG 57.551 43.478 0.00 0.00 0.00 5.69
2725 2882 2.589798 TATATTACCCGCTATGCCGC 57.410 50.000 0.00 0.00 0.00 6.53
2726 2883 0.107848 ATATTACCCGCTATGCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
2727 2884 2.175035 TATTACCCGCTATGCCGCCC 62.175 60.000 0.00 0.00 0.00 6.13
2731 2888 4.545706 CCGCTATGCCGCCCTGAA 62.546 66.667 0.00 0.00 0.00 3.02
2732 2889 2.513666 CGCTATGCCGCCCTGAAA 60.514 61.111 0.00 0.00 0.00 2.69
2733 2890 2.112198 CGCTATGCCGCCCTGAAAA 61.112 57.895 0.00 0.00 0.00 2.29
2734 2891 1.433471 GCTATGCCGCCCTGAAAAC 59.567 57.895 0.00 0.00 0.00 2.43
2735 2892 1.312371 GCTATGCCGCCCTGAAAACA 61.312 55.000 0.00 0.00 0.00 2.83
2736 2893 1.173043 CTATGCCGCCCTGAAAACAA 58.827 50.000 0.00 0.00 0.00 2.83
2737 2894 1.750778 CTATGCCGCCCTGAAAACAAT 59.249 47.619 0.00 0.00 0.00 2.71
2738 2895 0.975887 ATGCCGCCCTGAAAACAATT 59.024 45.000 0.00 0.00 0.00 2.32
2739 2896 0.755686 TGCCGCCCTGAAAACAATTT 59.244 45.000 0.00 0.00 0.00 1.82
2740 2897 1.147473 GCCGCCCTGAAAACAATTTG 58.853 50.000 0.00 0.00 0.00 2.32
2741 2898 1.147473 CCGCCCTGAAAACAATTTGC 58.853 50.000 0.00 0.00 0.00 3.68
2742 2899 1.270252 CCGCCCTGAAAACAATTTGCT 60.270 47.619 0.00 0.00 0.00 3.91
2743 2900 2.482864 CGCCCTGAAAACAATTTGCTT 58.517 42.857 0.00 0.00 0.00 3.91
2744 2901 2.871633 CGCCCTGAAAACAATTTGCTTT 59.128 40.909 0.00 0.00 0.00 3.51
2745 2902 3.312146 CGCCCTGAAAACAATTTGCTTTT 59.688 39.130 0.00 4.83 0.00 2.27
2746 2903 4.201901 CGCCCTGAAAACAATTTGCTTTTT 60.202 37.500 0.00 0.00 0.00 1.94
2765 2922 3.691049 TTTTTCAAAGTCGCTGTCCAG 57.309 42.857 0.00 0.00 0.00 3.86
2781 2938 5.344743 TGTCCAGCTCAGACTTTTATAGG 57.655 43.478 13.23 0.00 35.21 2.57
2782 2939 4.777896 TGTCCAGCTCAGACTTTTATAGGT 59.222 41.667 13.23 0.00 35.21 3.08
2783 2940 5.955959 TGTCCAGCTCAGACTTTTATAGGTA 59.044 40.000 13.23 0.00 35.21 3.08
2784 2941 6.611642 TGTCCAGCTCAGACTTTTATAGGTAT 59.388 38.462 13.23 0.00 35.21 2.73
2785 2942 6.926272 GTCCAGCTCAGACTTTTATAGGTATG 59.074 42.308 6.22 0.00 0.00 2.39
2786 2943 6.839134 TCCAGCTCAGACTTTTATAGGTATGA 59.161 38.462 0.00 0.00 33.54 2.15
2787 2944 7.510685 TCCAGCTCAGACTTTTATAGGTATGAT 59.489 37.037 0.00 0.00 34.03 2.45
2788 2945 8.807118 CCAGCTCAGACTTTTATAGGTATGATA 58.193 37.037 0.00 0.00 34.03 2.15
2789 2946 9.632807 CAGCTCAGACTTTTATAGGTATGATAC 57.367 37.037 0.00 0.00 34.03 2.24
2804 2961 7.534723 GGTATGATACCCACTCTATAACACA 57.465 40.000 10.58 0.00 43.18 3.72
2805 2962 8.135382 GGTATGATACCCACTCTATAACACAT 57.865 38.462 10.58 0.00 43.18 3.21
2806 2963 8.035394 GGTATGATACCCACTCTATAACACATG 58.965 40.741 10.58 0.00 43.18 3.21
2807 2964 5.853936 TGATACCCACTCTATAACACATGC 58.146 41.667 0.00 0.00 0.00 4.06
2808 2965 5.365314 TGATACCCACTCTATAACACATGCA 59.635 40.000 0.00 0.00 0.00 3.96
2809 2966 3.873910 ACCCACTCTATAACACATGCAC 58.126 45.455 0.00 0.00 0.00 4.57
2810 2967 3.206150 CCCACTCTATAACACATGCACC 58.794 50.000 0.00 0.00 0.00 5.01
2811 2968 3.206150 CCACTCTATAACACATGCACCC 58.794 50.000 0.00 0.00 0.00 4.61
2812 2969 3.118261 CCACTCTATAACACATGCACCCT 60.118 47.826 0.00 0.00 0.00 4.34
2813 2970 4.100963 CCACTCTATAACACATGCACCCTA 59.899 45.833 0.00 0.00 0.00 3.53
2814 2971 5.292765 CACTCTATAACACATGCACCCTAG 58.707 45.833 0.00 0.00 0.00 3.02
2815 2972 4.202264 ACTCTATAACACATGCACCCTAGC 60.202 45.833 0.00 0.00 0.00 3.42
2816 2973 2.348411 ATAACACATGCACCCTAGCC 57.652 50.000 0.00 0.00 0.00 3.93
2817 2974 0.988063 TAACACATGCACCCTAGCCA 59.012 50.000 0.00 0.00 0.00 4.75
2818 2975 0.609131 AACACATGCACCCTAGCCAC 60.609 55.000 0.00 0.00 0.00 5.01
2819 2976 1.002257 CACATGCACCCTAGCCACA 60.002 57.895 0.00 0.00 0.00 4.17
2820 2977 0.394762 CACATGCACCCTAGCCACAT 60.395 55.000 0.00 0.00 0.00 3.21
2821 2978 1.134128 CACATGCACCCTAGCCACATA 60.134 52.381 0.00 0.00 0.00 2.29
2822 2979 1.141657 ACATGCACCCTAGCCACATAG 59.858 52.381 0.00 0.00 0.00 2.23
2823 2980 1.141657 CATGCACCCTAGCCACATAGT 59.858 52.381 0.00 0.00 0.00 2.12
2824 2981 0.541392 TGCACCCTAGCCACATAGTG 59.459 55.000 0.00 0.00 0.00 2.74
2836 2993 3.895232 CACATAGTGGCTACAACCTCT 57.105 47.619 2.02 0.00 37.34 3.69
2837 2994 3.786635 CACATAGTGGCTACAACCTCTC 58.213 50.000 2.02 0.00 35.27 3.20
2838 2995 3.449018 CACATAGTGGCTACAACCTCTCT 59.551 47.826 2.02 0.00 35.27 3.10
2839 2996 3.702045 ACATAGTGGCTACAACCTCTCTC 59.298 47.826 2.02 0.00 35.27 3.20
2840 2997 2.614134 AGTGGCTACAACCTCTCTCT 57.386 50.000 2.02 0.00 0.00 3.10
2841 2998 2.452505 AGTGGCTACAACCTCTCTCTC 58.547 52.381 2.02 0.00 0.00 3.20
2842 2999 1.478916 GTGGCTACAACCTCTCTCTCC 59.521 57.143 0.00 0.00 0.00 3.71
2843 3000 0.741915 GGCTACAACCTCTCTCTCCG 59.258 60.000 0.00 0.00 0.00 4.63
2844 3001 1.682394 GGCTACAACCTCTCTCTCCGA 60.682 57.143 0.00 0.00 0.00 4.55
2845 3002 1.402613 GCTACAACCTCTCTCTCCGAC 59.597 57.143 0.00 0.00 0.00 4.79
2846 3003 2.018515 CTACAACCTCTCTCTCCGACC 58.981 57.143 0.00 0.00 0.00 4.79
2847 3004 0.112606 ACAACCTCTCTCTCCGACCA 59.887 55.000 0.00 0.00 0.00 4.02
2848 3005 1.257743 CAACCTCTCTCTCCGACCAA 58.742 55.000 0.00 0.00 0.00 3.67
2849 3006 1.203523 CAACCTCTCTCTCCGACCAAG 59.796 57.143 0.00 0.00 0.00 3.61
2850 3007 0.699399 ACCTCTCTCTCCGACCAAGA 59.301 55.000 0.00 0.00 0.00 3.02
2851 3008 1.075698 ACCTCTCTCTCCGACCAAGAA 59.924 52.381 0.00 0.00 0.00 2.52
2852 3009 1.748493 CCTCTCTCTCCGACCAAGAAG 59.252 57.143 0.00 0.00 0.00 2.85
2853 3010 2.619332 CCTCTCTCTCCGACCAAGAAGA 60.619 54.545 0.00 0.00 0.00 2.87
2854 3011 2.422127 CTCTCTCTCCGACCAAGAAGAC 59.578 54.545 0.00 0.00 0.00 3.01
2855 3012 1.474879 CTCTCTCCGACCAAGAAGACC 59.525 57.143 0.00 0.00 0.00 3.85
2856 3013 1.203013 TCTCTCCGACCAAGAAGACCA 60.203 52.381 0.00 0.00 0.00 4.02
2857 3014 1.203523 CTCTCCGACCAAGAAGACCAG 59.796 57.143 0.00 0.00 0.00 4.00
2858 3015 0.247736 CTCCGACCAAGAAGACCAGG 59.752 60.000 0.00 0.00 0.00 4.45
2859 3016 1.192146 TCCGACCAAGAAGACCAGGG 61.192 60.000 0.00 0.00 0.00 4.45
2860 3017 1.481056 CCGACCAAGAAGACCAGGGT 61.481 60.000 0.00 0.00 33.78 4.34
2861 3018 0.396811 CGACCAAGAAGACCAGGGTT 59.603 55.000 0.00 0.00 30.55 4.11
2862 3019 1.202770 CGACCAAGAAGACCAGGGTTT 60.203 52.381 0.00 0.00 30.55 3.27
2863 3020 2.230660 GACCAAGAAGACCAGGGTTTG 58.769 52.381 0.00 0.00 30.55 2.93
2864 3021 1.850345 ACCAAGAAGACCAGGGTTTGA 59.150 47.619 2.88 0.00 0.00 2.69
2865 3022 2.243736 ACCAAGAAGACCAGGGTTTGAA 59.756 45.455 2.88 0.00 0.00 2.69
2866 3023 2.623416 CCAAGAAGACCAGGGTTTGAAC 59.377 50.000 2.88 0.00 0.00 3.18
2884 3041 3.274281 AACCCCAGGTTCCATCATTTT 57.726 42.857 0.00 0.00 43.05 1.82
2885 3042 2.820178 ACCCCAGGTTCCATCATTTTC 58.180 47.619 0.00 0.00 27.29 2.29
2886 3043 2.110578 CCCCAGGTTCCATCATTTTCC 58.889 52.381 0.00 0.00 0.00 3.13
2887 3044 2.110578 CCCAGGTTCCATCATTTTCCC 58.889 52.381 0.00 0.00 0.00 3.97
2888 3045 2.110578 CCAGGTTCCATCATTTTCCCC 58.889 52.381 0.00 0.00 0.00 4.81
2889 3046 2.559478 CCAGGTTCCATCATTTTCCCCA 60.559 50.000 0.00 0.00 0.00 4.96
2890 3047 2.497273 CAGGTTCCATCATTTTCCCCAC 59.503 50.000 0.00 0.00 0.00 4.61
2891 3048 1.476488 GGTTCCATCATTTTCCCCACG 59.524 52.381 0.00 0.00 0.00 4.94
2892 3049 2.167662 GTTCCATCATTTTCCCCACGT 58.832 47.619 0.00 0.00 0.00 4.49
2893 3050 3.349022 GTTCCATCATTTTCCCCACGTA 58.651 45.455 0.00 0.00 0.00 3.57
2894 3051 2.993937 TCCATCATTTTCCCCACGTAC 58.006 47.619 0.00 0.00 0.00 3.67
2895 3052 1.668751 CCATCATTTTCCCCACGTACG 59.331 52.381 15.01 15.01 0.00 3.67
2896 3053 2.352388 CATCATTTTCCCCACGTACGT 58.648 47.619 16.72 16.72 0.00 3.57
2897 3054 3.523547 CATCATTTTCCCCACGTACGTA 58.476 45.455 22.34 3.59 0.00 3.57
2898 3055 3.891422 TCATTTTCCCCACGTACGTAT 57.109 42.857 22.34 6.15 0.00 3.06
2899 3056 4.205065 TCATTTTCCCCACGTACGTATT 57.795 40.909 22.34 0.00 0.00 1.89
2900 3057 4.183101 TCATTTTCCCCACGTACGTATTC 58.817 43.478 22.34 0.00 0.00 1.75
2901 3058 3.674528 TTTTCCCCACGTACGTATTCA 57.325 42.857 22.34 2.75 0.00 2.57
2902 3059 3.891422 TTTCCCCACGTACGTATTCAT 57.109 42.857 22.34 0.00 0.00 2.57
2908 3065 0.825410 ACGTACGTATTCATGGGCCA 59.175 50.000 21.41 9.61 0.00 5.36
2909 3066 1.214367 CGTACGTATTCATGGGCCAC 58.786 55.000 9.28 0.00 0.00 5.01
2914 3071 2.004120 TATTCATGGGCCACGGGGT 61.004 57.895 9.28 0.00 36.17 4.95
2927 3084 3.480133 GGGGTGTGGCGCCTCTAT 61.480 66.667 29.70 0.00 45.76 1.98
2966 3123 9.931210 TTCGTTTATTTGTCTTCTCTTTTCTTC 57.069 29.630 0.00 0.00 0.00 2.87
3028 3186 9.262358 CGGGGTTTATAAATTTCAAAAAGTTGA 57.738 29.630 0.31 0.00 42.12 3.18
3141 3304 8.777865 TGTTGGTGATTTTACAAAAATGTTCA 57.222 26.923 2.51 0.00 0.00 3.18
3217 3382 9.467258 TCATGTTCTTGATTTTGAGAAAATGAC 57.533 29.630 12.57 0.00 45.17 3.06
3496 4065 4.742659 TGCCGTTTCAAAAGTCTTTTATGC 59.257 37.500 10.22 7.64 0.00 3.14
3540 4109 5.655532 TGGAAAGTCTTTATACGTCTAGGCT 59.344 40.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.925211 TGGACTACTAGACACAAAGAGATTG 58.075 40.000 0.00 0.00 44.95 2.67
7 8 6.892456 TGATGGACTACTAGACACAAAGAGAT 59.108 38.462 0.00 0.00 0.00 2.75
8 9 6.246163 TGATGGACTACTAGACACAAAGAGA 58.754 40.000 0.00 0.00 0.00 3.10
9 10 6.516739 TGATGGACTACTAGACACAAAGAG 57.483 41.667 0.00 0.00 0.00 2.85
12 13 6.850752 TCATGATGGACTACTAGACACAAA 57.149 37.500 0.00 0.00 0.00 2.83
13 14 6.127338 CCTTCATGATGGACTACTAGACACAA 60.127 42.308 20.45 0.00 0.00 3.33
14 15 5.360999 CCTTCATGATGGACTACTAGACACA 59.639 44.000 20.45 0.00 0.00 3.72
15 16 5.594725 TCCTTCATGATGGACTACTAGACAC 59.405 44.000 22.98 0.00 30.65 3.67
16 17 5.766590 TCCTTCATGATGGACTACTAGACA 58.233 41.667 22.98 0.99 30.65 3.41
17 18 5.830991 ACTCCTTCATGATGGACTACTAGAC 59.169 44.000 22.98 0.00 32.10 2.59
20 21 5.163405 GCAACTCCTTCATGATGGACTACTA 60.163 44.000 22.98 5.46 32.10 1.82
21 22 4.383552 GCAACTCCTTCATGATGGACTACT 60.384 45.833 22.98 7.86 32.10 2.57
22 23 3.873952 GCAACTCCTTCATGATGGACTAC 59.126 47.826 22.98 11.29 32.10 2.73
23 24 3.519107 TGCAACTCCTTCATGATGGACTA 59.481 43.478 22.98 6.76 32.10 2.59
24 25 2.306805 TGCAACTCCTTCATGATGGACT 59.693 45.455 22.98 13.46 32.10 3.85
25 26 2.715046 TGCAACTCCTTCATGATGGAC 58.285 47.619 22.98 15.06 32.10 4.02
27 28 3.021695 ACATGCAACTCCTTCATGATGG 58.978 45.455 19.32 19.32 39.80 3.51
28 29 3.945921 AGACATGCAACTCCTTCATGATG 59.054 43.478 0.00 0.00 39.80 3.07
184 202 1.136252 GCATATGCATGTTACGGCGAG 60.136 52.381 22.84 0.00 41.59 5.03
185 203 0.865111 GCATATGCATGTTACGGCGA 59.135 50.000 22.84 0.00 41.59 5.54
186 204 0.450972 CGCATATGCATGTTACGGCG 60.451 55.000 26.52 10.41 42.21 6.46
187 205 0.725784 GCGCATATGCATGTTACGGC 60.726 55.000 26.52 15.14 42.21 5.68
241 271 3.254654 CGTGCCATGCGACGTAGG 61.255 66.667 0.00 0.00 32.05 3.18
250 280 0.448990 CACTTGATCACCGTGCCATG 59.551 55.000 10.41 0.29 0.00 3.66
251 281 0.324614 TCACTTGATCACCGTGCCAT 59.675 50.000 15.97 0.00 0.00 4.40
253 283 1.021390 CCTCACTTGATCACCGTGCC 61.021 60.000 15.97 0.00 0.00 5.01
255 285 1.714794 GTCCTCACTTGATCACCGTG 58.285 55.000 15.04 15.04 0.00 4.94
257 287 0.526211 TCGTCCTCACTTGATCACCG 59.474 55.000 0.00 0.00 0.00 4.94
352 382 1.000843 TGTATATGCACTAGCCGCTGG 59.999 52.381 2.16 1.83 41.13 4.85
353 383 2.061773 GTGTATATGCACTAGCCGCTG 58.938 52.381 15.83 0.00 41.13 5.18
354 384 1.686587 TGTGTATATGCACTAGCCGCT 59.313 47.619 22.21 0.00 41.13 5.52
355 385 2.148916 TGTGTATATGCACTAGCCGC 57.851 50.000 22.21 0.00 41.13 6.53
357 387 7.962964 TTTCTATTGTGTATATGCACTAGCC 57.037 36.000 22.21 0.00 41.13 3.93
378 408 7.091443 CGACCATGTATCTAGTCCCTATTTTC 58.909 42.308 0.00 0.00 0.00 2.29
380 410 6.075984 ACGACCATGTATCTAGTCCCTATTT 58.924 40.000 0.00 0.00 0.00 1.40
381 411 5.642165 ACGACCATGTATCTAGTCCCTATT 58.358 41.667 0.00 0.00 0.00 1.73
387 417 4.430007 TGCAAACGACCATGTATCTAGTC 58.570 43.478 0.00 0.00 0.00 2.59
412 445 2.813172 CCCATACATAACATGCATGCGA 59.187 45.455 26.53 14.80 33.60 5.10
413 446 2.095110 CCCCATACATAACATGCATGCG 60.095 50.000 26.53 14.52 33.60 4.73
478 515 6.630444 TTCTACGTGGATAACTGTAGGATC 57.370 41.667 1.20 0.00 36.94 3.36
479 516 5.009811 GCTTCTACGTGGATAACTGTAGGAT 59.990 44.000 1.20 0.00 36.94 3.24
481 518 4.608951 GCTTCTACGTGGATAACTGTAGG 58.391 47.826 1.20 0.00 36.94 3.18
483 520 3.691118 ACGCTTCTACGTGGATAACTGTA 59.309 43.478 1.20 0.00 46.28 2.74
500 537 1.077716 GGCCTGGTGGATTACGCTT 60.078 57.895 0.00 0.00 34.57 4.68
509 546 2.866523 ATTGCTCCATGGCCTGGTGG 62.867 60.000 17.55 15.85 46.08 4.61
556 607 0.323360 TTTCCCCATTTCTCCCTGCG 60.323 55.000 0.00 0.00 0.00 5.18
633 686 2.224378 CCAAGCCAGTTGAGACTTGAGA 60.224 50.000 3.29 0.00 41.59 3.27
634 687 2.149578 CCAAGCCAGTTGAGACTTGAG 58.850 52.381 3.29 0.00 41.59 3.02
635 688 1.815408 GCCAAGCCAGTTGAGACTTGA 60.815 52.381 3.29 0.00 41.59 3.02
636 689 0.595095 GCCAAGCCAGTTGAGACTTG 59.405 55.000 0.00 0.00 38.60 3.16
637 690 0.183492 TGCCAAGCCAGTTGAGACTT 59.817 50.000 0.00 0.00 38.60 3.01
638 691 0.536006 GTGCCAAGCCAGTTGAGACT 60.536 55.000 0.00 0.00 38.60 3.24
639 692 0.536006 AGTGCCAAGCCAGTTGAGAC 60.536 55.000 0.00 0.00 38.60 3.36
683 757 5.969435 CACAGAGTAATTATTGCATGCACAG 59.031 40.000 22.58 4.93 0.00 3.66
717 798 1.373748 GCCAAGCTACCGAACGTGA 60.374 57.895 0.00 0.00 0.00 4.35
733 818 3.737032 ACTAGCTATTTTCTCCTCGCC 57.263 47.619 0.00 0.00 0.00 5.54
745 830 5.885449 ATTCCTGCTTCTCAACTAGCTAT 57.115 39.130 0.00 0.00 38.22 2.97
746 831 6.381420 AGTTATTCCTGCTTCTCAACTAGCTA 59.619 38.462 0.00 0.00 38.22 3.32
747 832 5.188751 AGTTATTCCTGCTTCTCAACTAGCT 59.811 40.000 0.00 0.00 38.22 3.32
748 833 5.423886 AGTTATTCCTGCTTCTCAACTAGC 58.576 41.667 0.00 0.00 37.89 3.42
749 834 6.699642 GCTAGTTATTCCTGCTTCTCAACTAG 59.300 42.308 12.14 12.14 43.26 2.57
750 835 6.381420 AGCTAGTTATTCCTGCTTCTCAACTA 59.619 38.462 0.00 0.00 0.00 2.24
751 836 5.188751 AGCTAGTTATTCCTGCTTCTCAACT 59.811 40.000 0.00 0.00 0.00 3.16
752 837 5.293079 CAGCTAGTTATTCCTGCTTCTCAAC 59.707 44.000 0.00 0.00 0.00 3.18
753 838 5.187772 TCAGCTAGTTATTCCTGCTTCTCAA 59.812 40.000 0.00 0.00 0.00 3.02
754 839 4.711846 TCAGCTAGTTATTCCTGCTTCTCA 59.288 41.667 0.00 0.00 0.00 3.27
755 840 5.047188 GTCAGCTAGTTATTCCTGCTTCTC 58.953 45.833 0.00 0.00 0.00 2.87
756 841 4.440802 CGTCAGCTAGTTATTCCTGCTTCT 60.441 45.833 0.00 0.00 0.00 2.85
757 842 3.799420 CGTCAGCTAGTTATTCCTGCTTC 59.201 47.826 0.00 0.00 0.00 3.86
758 843 3.447586 TCGTCAGCTAGTTATTCCTGCTT 59.552 43.478 0.00 0.00 0.00 3.91
759 844 3.024547 TCGTCAGCTAGTTATTCCTGCT 58.975 45.455 0.00 0.00 0.00 4.24
760 845 3.438297 TCGTCAGCTAGTTATTCCTGC 57.562 47.619 0.00 0.00 0.00 4.85
761 846 4.222886 CGATCGTCAGCTAGTTATTCCTG 58.777 47.826 7.03 0.00 0.00 3.86
762 847 3.253677 CCGATCGTCAGCTAGTTATTCCT 59.746 47.826 15.09 0.00 0.00 3.36
763 848 3.004524 ACCGATCGTCAGCTAGTTATTCC 59.995 47.826 15.09 0.00 0.00 3.01
764 849 4.220572 GACCGATCGTCAGCTAGTTATTC 58.779 47.826 15.09 0.00 41.54 1.75
765 850 3.630769 TGACCGATCGTCAGCTAGTTATT 59.369 43.478 15.09 0.00 46.80 1.40
766 851 3.211865 TGACCGATCGTCAGCTAGTTAT 58.788 45.455 15.09 0.00 46.80 1.89
767 852 2.635714 TGACCGATCGTCAGCTAGTTA 58.364 47.619 15.09 0.00 46.80 2.24
768 853 1.460504 TGACCGATCGTCAGCTAGTT 58.539 50.000 15.09 0.00 46.80 2.24
769 854 3.170360 TGACCGATCGTCAGCTAGT 57.830 52.632 15.09 2.21 46.80 2.57
776 861 2.278013 GCGAGGTGACCGATCGTC 60.278 66.667 15.09 11.95 42.33 4.20
777 862 2.881539 TAGGCGAGGTGACCGATCGT 62.882 60.000 15.09 1.83 38.66 3.73
791 882 3.747193 CACACTTGCATAAGTTTAGGCG 58.253 45.455 4.37 0.00 44.57 5.52
846 968 1.226491 GAAGCGTGCATGCATGGAC 60.226 57.895 34.04 34.04 44.42 4.02
937 1059 0.322906 GCCATGGATTAGCTAGGGGC 60.323 60.000 18.40 0.00 42.19 5.80
963 1085 0.921347 GTGCGTGTGTCTTATAGCGG 59.079 55.000 0.00 0.00 0.00 5.52
965 1087 1.134788 AGGGTGCGTGTGTCTTATAGC 60.135 52.381 0.00 0.00 0.00 2.97
971 1101 0.886563 GTACTAGGGTGCGTGTGTCT 59.113 55.000 0.00 0.00 0.00 3.41
972 1102 0.108945 GGTACTAGGGTGCGTGTGTC 60.109 60.000 0.00 0.00 0.00 3.67
974 1104 0.108804 CTGGTACTAGGGTGCGTGTG 60.109 60.000 0.00 0.00 0.00 3.82
979 1109 0.902531 TTGCTCTGGTACTAGGGTGC 59.097 55.000 8.05 9.76 0.00 5.01
993 1123 0.814457 TGTGGTTGTTGGTGTTGCTC 59.186 50.000 0.00 0.00 0.00 4.26
995 1125 1.355005 GTTGTGGTTGTTGGTGTTGC 58.645 50.000 0.00 0.00 0.00 4.17
997 1127 1.548269 CTGGTTGTGGTTGTTGGTGTT 59.452 47.619 0.00 0.00 0.00 3.32
1000 1130 0.613292 TGCTGGTTGTGGTTGTTGGT 60.613 50.000 0.00 0.00 0.00 3.67
1001 1131 0.534412 TTGCTGGTTGTGGTTGTTGG 59.466 50.000 0.00 0.00 0.00 3.77
1031 1165 6.183360 GCTGGATAGATGAGTTTGTGTTTCTC 60.183 42.308 0.00 0.00 0.00 2.87
1041 1175 5.128919 GGTTGAATGCTGGATAGATGAGTT 58.871 41.667 0.00 0.00 0.00 3.01
1042 1176 4.164796 TGGTTGAATGCTGGATAGATGAGT 59.835 41.667 0.00 0.00 0.00 3.41
1043 1177 4.711399 TGGTTGAATGCTGGATAGATGAG 58.289 43.478 0.00 0.00 0.00 2.90
1044 1178 4.164796 ACTGGTTGAATGCTGGATAGATGA 59.835 41.667 0.00 0.00 0.00 2.92
1045 1179 4.458397 ACTGGTTGAATGCTGGATAGATG 58.542 43.478 0.00 0.00 0.00 2.90
1046 1180 4.164796 TGACTGGTTGAATGCTGGATAGAT 59.835 41.667 0.00 0.00 0.00 1.98
1047 1181 3.519107 TGACTGGTTGAATGCTGGATAGA 59.481 43.478 0.00 0.00 0.00 1.98
1048 1182 3.624861 GTGACTGGTTGAATGCTGGATAG 59.375 47.826 0.00 0.00 0.00 2.08
1049 1183 3.264193 AGTGACTGGTTGAATGCTGGATA 59.736 43.478 0.00 0.00 0.00 2.59
1051 1185 1.421268 AGTGACTGGTTGAATGCTGGA 59.579 47.619 0.00 0.00 0.00 3.86
1053 1187 2.417933 GCTAGTGACTGGTTGAATGCTG 59.582 50.000 0.00 0.00 0.00 4.41
1054 1188 2.304180 AGCTAGTGACTGGTTGAATGCT 59.696 45.455 0.00 0.00 0.00 3.79
1055 1189 2.704572 AGCTAGTGACTGGTTGAATGC 58.295 47.619 0.00 0.00 0.00 3.56
1059 1193 2.037251 GGACAAGCTAGTGACTGGTTGA 59.963 50.000 23.44 0.00 42.22 3.18
1154 1288 2.046892 ATGAGCGTGCACAGGACC 60.047 61.111 18.64 1.29 0.00 4.46
1401 1535 6.828273 TCAAGTAATAATAGCCATGTTGTGCT 59.172 34.615 0.00 0.00 41.57 4.40
1402 1536 7.026631 TCAAGTAATAATAGCCATGTTGTGC 57.973 36.000 0.00 0.00 0.00 4.57
1403 1537 8.839343 TCATCAAGTAATAATAGCCATGTTGTG 58.161 33.333 0.00 0.00 0.00 3.33
1404 1538 8.978874 TCATCAAGTAATAATAGCCATGTTGT 57.021 30.769 0.00 0.00 0.00 3.32
1452 1586 8.625786 AAGATTAGCATATGCATGTGTGATTA 57.374 30.769 28.62 6.92 45.16 1.75
1454 1588 6.940867 AGAAGATTAGCATATGCATGTGTGAT 59.059 34.615 28.62 14.34 45.16 3.06
1456 1590 6.555812 AGAAGATTAGCATATGCATGTGTG 57.444 37.500 28.62 13.27 45.16 3.82
1458 1592 5.856986 GCAAGAAGATTAGCATATGCATGTG 59.143 40.000 28.62 18.29 45.16 3.21
1463 1601 5.345202 GCAATGCAAGAAGATTAGCATATGC 59.655 40.000 20.36 20.36 46.10 3.14
1464 1602 6.443792 TGCAATGCAAGAAGATTAGCATATG 58.556 36.000 5.01 0.00 46.10 1.78
1595 1734 1.768275 TGCAGAAGTCCTGGTTCTTCA 59.232 47.619 24.13 13.19 43.13 3.02
1677 1819 3.114616 CAGGTGAAGTCGCGGCTG 61.115 66.667 16.93 0.00 0.00 4.85
1812 1957 4.242586 TCGGTGGGTGGGAGGTCA 62.243 66.667 0.00 0.00 0.00 4.02
1854 2005 2.611800 ATGGAGAGGCCTGGCACA 60.612 61.111 22.05 10.98 37.63 4.57
2253 2410 3.165031 CGATCGATCGCTTAGACGTAA 57.835 47.619 32.34 0.00 43.84 3.18
2275 2432 1.971695 CCGGGCTGGTTTTGACTCC 60.972 63.158 3.48 0.00 0.00 3.85
2297 2454 3.900393 TACGCTAGCACGCACGCAA 62.900 57.895 16.45 0.00 36.19 4.85
2298 2455 4.407694 TACGCTAGCACGCACGCA 62.408 61.111 16.45 0.00 36.19 5.24
2299 2456 3.898640 GTACGCTAGCACGCACGC 61.899 66.667 16.45 0.00 36.19 5.34
2300 2457 3.594827 CGTACGCTAGCACGCACG 61.595 66.667 16.45 13.42 45.08 5.34
2301 2458 2.503375 ACGTACGCTAGCACGCAC 60.503 61.111 23.06 10.33 40.59 5.34
2440 2597 8.242053 CCACTTACATAGGAGTATATACCAACG 58.758 40.741 9.32 0.00 0.00 4.10
2549 2706 1.324736 GGCGACGAGAAGCAATACTTG 59.675 52.381 0.00 0.00 39.29 3.16
2550 2707 1.641577 GGCGACGAGAAGCAATACTT 58.358 50.000 0.00 0.00 42.98 2.24
2551 2708 0.179108 GGGCGACGAGAAGCAATACT 60.179 55.000 0.00 0.00 34.54 2.12
2552 2709 0.459585 TGGGCGACGAGAAGCAATAC 60.460 55.000 0.00 0.00 34.54 1.89
2553 2710 0.464036 ATGGGCGACGAGAAGCAATA 59.536 50.000 0.00 0.00 34.54 1.90
2554 2711 0.811616 GATGGGCGACGAGAAGCAAT 60.812 55.000 0.00 0.00 34.54 3.56
2555 2712 1.447838 GATGGGCGACGAGAAGCAA 60.448 57.895 0.00 0.00 34.54 3.91
2556 2713 1.035385 TAGATGGGCGACGAGAAGCA 61.035 55.000 0.00 0.00 34.54 3.91
2557 2714 0.102481 TTAGATGGGCGACGAGAAGC 59.898 55.000 0.00 0.00 0.00 3.86
2558 2715 2.579207 TTTAGATGGGCGACGAGAAG 57.421 50.000 0.00 0.00 0.00 2.85
2559 2716 3.322211 TTTTTAGATGGGCGACGAGAA 57.678 42.857 0.00 0.00 0.00 2.87
2560 2717 3.536956 ATTTTTAGATGGGCGACGAGA 57.463 42.857 0.00 0.00 0.00 4.04
2561 2718 4.025145 GGTAATTTTTAGATGGGCGACGAG 60.025 45.833 0.00 0.00 0.00 4.18
2562 2719 3.872771 GGTAATTTTTAGATGGGCGACGA 59.127 43.478 0.00 0.00 0.00 4.20
2563 2720 3.002965 GGGTAATTTTTAGATGGGCGACG 59.997 47.826 0.00 0.00 0.00 5.12
2564 2721 4.204799 AGGGTAATTTTTAGATGGGCGAC 58.795 43.478 0.00 0.00 0.00 5.19
2565 2722 4.080243 TGAGGGTAATTTTTAGATGGGCGA 60.080 41.667 0.00 0.00 0.00 5.54
2566 2723 4.204012 TGAGGGTAATTTTTAGATGGGCG 58.796 43.478 0.00 0.00 0.00 6.13
2567 2724 6.154534 ACTTTGAGGGTAATTTTTAGATGGGC 59.845 38.462 0.00 0.00 0.00 5.36
2568 2725 7.147897 GGACTTTGAGGGTAATTTTTAGATGGG 60.148 40.741 0.00 0.00 0.00 4.00
2569 2726 7.147897 GGGACTTTGAGGGTAATTTTTAGATGG 60.148 40.741 0.00 0.00 0.00 3.51
2570 2727 7.615757 AGGGACTTTGAGGGTAATTTTTAGATG 59.384 37.037 0.00 0.00 27.25 2.90
2571 2728 7.709601 AGGGACTTTGAGGGTAATTTTTAGAT 58.290 34.615 0.00 0.00 27.25 1.98
2572 2729 7.018249 AGAGGGACTTTGAGGGTAATTTTTAGA 59.982 37.037 0.00 0.00 41.55 2.10
2573 2730 7.175797 AGAGGGACTTTGAGGGTAATTTTTAG 58.824 38.462 0.00 0.00 41.55 1.85
2574 2731 7.018249 AGAGAGGGACTTTGAGGGTAATTTTTA 59.982 37.037 0.00 0.00 41.55 1.52
2575 2732 5.965486 AGAGGGACTTTGAGGGTAATTTTT 58.035 37.500 0.00 0.00 41.55 1.94
2576 2733 5.313506 AGAGAGGGACTTTGAGGGTAATTTT 59.686 40.000 0.00 0.00 41.55 1.82
2577 2734 4.852697 AGAGAGGGACTTTGAGGGTAATTT 59.147 41.667 0.00 0.00 41.55 1.82
2578 2735 4.439860 AGAGAGGGACTTTGAGGGTAATT 58.560 43.478 0.00 0.00 41.55 1.40
2579 2736 4.034410 GAGAGAGGGACTTTGAGGGTAAT 58.966 47.826 0.00 0.00 41.55 1.89
2580 2737 3.442076 GAGAGAGGGACTTTGAGGGTAA 58.558 50.000 0.00 0.00 41.55 2.85
2581 2738 2.292323 GGAGAGAGGGACTTTGAGGGTA 60.292 54.545 0.00 0.00 41.55 3.69
2582 2739 1.553651 GGAGAGAGGGACTTTGAGGGT 60.554 57.143 0.00 0.00 41.55 4.34
2583 2740 1.199615 GGAGAGAGGGACTTTGAGGG 58.800 60.000 0.00 0.00 41.55 4.30
2584 2741 0.820871 CGGAGAGAGGGACTTTGAGG 59.179 60.000 0.00 0.00 41.55 3.86
2585 2742 0.820871 CCGGAGAGAGGGACTTTGAG 59.179 60.000 0.00 0.00 41.55 3.02
2586 2743 0.408309 TCCGGAGAGAGGGACTTTGA 59.592 55.000 0.00 0.00 41.55 2.69
2587 2744 1.267121 TTCCGGAGAGAGGGACTTTG 58.733 55.000 3.34 0.00 41.55 2.77
2588 2745 2.025636 TTTCCGGAGAGAGGGACTTT 57.974 50.000 3.34 0.00 41.55 2.66
2589 2746 2.255770 ATTTCCGGAGAGAGGGACTT 57.744 50.000 3.34 0.00 41.55 3.01
2591 2748 2.668625 AGTATTTCCGGAGAGAGGGAC 58.331 52.381 3.34 0.00 30.46 4.46
2592 2749 3.031736 CAAGTATTTCCGGAGAGAGGGA 58.968 50.000 3.34 0.00 0.00 4.20
2593 2750 2.766828 ACAAGTATTTCCGGAGAGAGGG 59.233 50.000 3.34 0.00 0.00 4.30
2594 2751 3.489398 CGACAAGTATTTCCGGAGAGAGG 60.489 52.174 3.34 0.00 0.00 3.69
2595 2752 3.489398 CCGACAAGTATTTCCGGAGAGAG 60.489 52.174 3.34 0.00 42.49 3.20
2596 2753 2.426024 CCGACAAGTATTTCCGGAGAGA 59.574 50.000 3.34 0.00 42.49 3.10
2597 2754 2.426024 TCCGACAAGTATTTCCGGAGAG 59.574 50.000 3.34 0.00 43.47 3.20
2598 2755 2.449464 TCCGACAAGTATTTCCGGAGA 58.551 47.619 3.34 0.00 43.47 3.71
2599 2756 2.953466 TCCGACAAGTATTTCCGGAG 57.047 50.000 3.34 0.00 43.47 4.63
2600 2757 2.827322 TCTTCCGACAAGTATTTCCGGA 59.173 45.455 0.00 0.00 46.18 5.14
2601 2758 3.241067 TCTTCCGACAAGTATTTCCGG 57.759 47.619 0.00 0.00 41.36 5.14
2602 2759 4.034048 CCATTCTTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2603 2760 5.183228 TCCATTCTTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2604 2761 6.316390 ACATCCATTCTTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
2605 2762 6.180472 ACATCCATTCTTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
2606 2763 5.745227 ACATCCATTCTTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
2607 2764 5.359194 ACATCCATTCTTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
2608 2765 4.819105 ACATCCATTCTTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2609 2766 3.703001 ACATCCATTCTTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2610 2767 5.118990 ACATACATCCATTCTTCCGACAAG 58.881 41.667 0.00 0.00 0.00 3.16
2611 2768 5.097742 ACATACATCCATTCTTCCGACAA 57.902 39.130 0.00 0.00 0.00 3.18
2612 2769 4.753516 ACATACATCCATTCTTCCGACA 57.246 40.909 0.00 0.00 0.00 4.35
2613 2770 6.085555 TCTACATACATCCATTCTTCCGAC 57.914 41.667 0.00 0.00 0.00 4.79
2614 2771 6.267699 ACATCTACATACATCCATTCTTCCGA 59.732 38.462 0.00 0.00 0.00 4.55
2615 2772 6.459066 ACATCTACATACATCCATTCTTCCG 58.541 40.000 0.00 0.00 0.00 4.30
2616 2773 9.950496 AATACATCTACATACATCCATTCTTCC 57.050 33.333 0.00 0.00 0.00 3.46
2655 2812 9.369904 GTTGGAGAAATGCATAAAAATGTATGT 57.630 29.630 0.00 0.00 34.51 2.29
2656 2813 9.368674 TGTTGGAGAAATGCATAAAAATGTATG 57.631 29.630 0.00 0.00 35.03 2.39
2657 2814 9.941325 TTGTTGGAGAAATGCATAAAAATGTAT 57.059 25.926 0.00 0.00 0.00 2.29
2658 2815 9.770097 TTTGTTGGAGAAATGCATAAAAATGTA 57.230 25.926 0.00 0.00 0.00 2.29
2659 2816 8.674263 TTTGTTGGAGAAATGCATAAAAATGT 57.326 26.923 0.00 0.00 0.00 2.71
2664 2821 9.598517 GGAATATTTGTTGGAGAAATGCATAAA 57.401 29.630 0.00 0.00 0.00 1.40
2665 2822 8.203485 GGGAATATTTGTTGGAGAAATGCATAA 58.797 33.333 0.00 0.00 0.00 1.90
2666 2823 7.469870 CGGGAATATTTGTTGGAGAAATGCATA 60.470 37.037 0.00 0.00 0.00 3.14
2667 2824 6.585416 GGGAATATTTGTTGGAGAAATGCAT 58.415 36.000 0.00 0.00 0.00 3.96
2668 2825 5.394005 CGGGAATATTTGTTGGAGAAATGCA 60.394 40.000 0.00 0.00 0.00 3.96
2669 2826 5.043248 CGGGAATATTTGTTGGAGAAATGC 58.957 41.667 0.00 0.00 0.00 3.56
2670 2827 5.043248 GCGGGAATATTTGTTGGAGAAATG 58.957 41.667 0.00 0.00 0.00 2.32
2671 2828 4.709397 TGCGGGAATATTTGTTGGAGAAAT 59.291 37.500 0.00 0.00 0.00 2.17
2672 2829 4.082463 GTGCGGGAATATTTGTTGGAGAAA 60.082 41.667 0.00 0.00 0.00 2.52
2673 2830 3.442273 GTGCGGGAATATTTGTTGGAGAA 59.558 43.478 0.00 0.00 0.00 2.87
2674 2831 3.013921 GTGCGGGAATATTTGTTGGAGA 58.986 45.455 0.00 0.00 0.00 3.71
2675 2832 2.223249 CGTGCGGGAATATTTGTTGGAG 60.223 50.000 0.00 0.00 0.00 3.86
2676 2833 1.740585 CGTGCGGGAATATTTGTTGGA 59.259 47.619 0.00 0.00 0.00 3.53
2677 2834 1.202245 CCGTGCGGGAATATTTGTTGG 60.202 52.381 2.15 0.00 38.47 3.77
2678 2835 1.740585 TCCGTGCGGGAATATTTGTTG 59.259 47.619 10.94 0.00 43.62 3.33
2679 2836 2.014128 CTCCGTGCGGGAATATTTGTT 58.986 47.619 10.94 0.00 46.61 2.83
2680 2837 1.663695 CTCCGTGCGGGAATATTTGT 58.336 50.000 10.94 0.00 46.61 2.83
2681 2838 0.944386 CCTCCGTGCGGGAATATTTG 59.056 55.000 10.94 0.00 46.61 2.32
2682 2839 0.179029 CCCTCCGTGCGGGAATATTT 60.179 55.000 10.94 0.00 46.61 1.40
2683 2840 1.450211 CCCTCCGTGCGGGAATATT 59.550 57.895 10.94 0.00 46.61 1.28
2684 2841 3.148084 CCCTCCGTGCGGGAATAT 58.852 61.111 10.94 0.00 46.61 1.28
2689 2846 0.898789 ATATACTCCCTCCGTGCGGG 60.899 60.000 10.94 1.77 43.38 6.13
2690 2847 1.830279 TATATACTCCCTCCGTGCGG 58.170 55.000 3.94 3.94 0.00 5.69
2691 2848 4.201990 GGTAATATATACTCCCTCCGTGCG 60.202 50.000 0.00 0.00 0.00 5.34
2692 2849 4.099113 GGGTAATATATACTCCCTCCGTGC 59.901 50.000 10.66 0.00 35.63 5.34
2693 2850 4.337555 CGGGTAATATATACTCCCTCCGTG 59.662 50.000 14.04 0.68 36.30 4.94
2694 2851 4.530875 CGGGTAATATATACTCCCTCCGT 58.469 47.826 14.04 0.00 36.30 4.69
2695 2852 3.317430 GCGGGTAATATATACTCCCTCCG 59.683 52.174 14.04 10.12 36.30 4.63
2696 2853 4.544683 AGCGGGTAATATATACTCCCTCC 58.455 47.826 14.04 7.90 36.30 4.30
2697 2854 6.294620 GCATAGCGGGTAATATATACTCCCTC 60.295 46.154 14.04 8.84 36.30 4.30
2698 2855 5.539193 GCATAGCGGGTAATATATACTCCCT 59.461 44.000 14.04 3.10 36.30 4.20
2699 2856 5.279356 GGCATAGCGGGTAATATATACTCCC 60.279 48.000 8.77 8.77 35.22 4.30
2700 2857 5.564259 CGGCATAGCGGGTAATATATACTCC 60.564 48.000 0.00 0.00 0.00 3.85
2701 2858 5.458891 CGGCATAGCGGGTAATATATACTC 58.541 45.833 0.00 0.00 0.00 2.59
2702 2859 4.261909 GCGGCATAGCGGGTAATATATACT 60.262 45.833 0.00 0.00 0.00 2.12
2703 2860 3.985925 GCGGCATAGCGGGTAATATATAC 59.014 47.826 0.00 0.00 0.00 1.47
2704 2861 3.006110 GGCGGCATAGCGGGTAATATATA 59.994 47.826 3.07 0.00 38.18 0.86
2705 2862 2.224209 GGCGGCATAGCGGGTAATATAT 60.224 50.000 3.07 0.00 38.18 0.86
2706 2863 1.137479 GGCGGCATAGCGGGTAATATA 59.863 52.381 3.07 0.00 38.18 0.86
2707 2864 0.107848 GGCGGCATAGCGGGTAATAT 60.108 55.000 3.07 0.00 38.18 1.28
2708 2865 1.294138 GGCGGCATAGCGGGTAATA 59.706 57.895 3.07 0.00 38.18 0.98
2709 2866 2.032071 GGCGGCATAGCGGGTAAT 59.968 61.111 3.07 0.00 38.18 1.89
2710 2867 4.244463 GGGCGGCATAGCGGGTAA 62.244 66.667 12.47 0.00 38.18 2.85
2714 2871 4.545706 TTCAGGGCGGCATAGCGG 62.546 66.667 12.47 0.00 38.18 5.52
2715 2872 2.112198 TTTTCAGGGCGGCATAGCG 61.112 57.895 12.47 0.00 38.18 4.26
2716 2873 1.312371 TGTTTTCAGGGCGGCATAGC 61.312 55.000 12.47 0.00 0.00 2.97
2717 2874 1.173043 TTGTTTTCAGGGCGGCATAG 58.827 50.000 12.47 0.00 0.00 2.23
2718 2875 1.846007 ATTGTTTTCAGGGCGGCATA 58.154 45.000 12.47 0.00 0.00 3.14
2719 2876 0.975887 AATTGTTTTCAGGGCGGCAT 59.024 45.000 12.47 0.00 0.00 4.40
2720 2877 0.755686 AAATTGTTTTCAGGGCGGCA 59.244 45.000 12.47 0.00 0.00 5.69
2721 2878 1.147473 CAAATTGTTTTCAGGGCGGC 58.853 50.000 0.00 0.00 0.00 6.53
2722 2879 1.147473 GCAAATTGTTTTCAGGGCGG 58.853 50.000 0.00 0.00 0.00 6.13
2723 2880 2.153366 AGCAAATTGTTTTCAGGGCG 57.847 45.000 0.00 0.00 0.00 6.13
2724 2881 4.898829 AAAAGCAAATTGTTTTCAGGGC 57.101 36.364 8.19 0.00 29.43 5.19
2745 2902 2.223479 GCTGGACAGCGACTTTGAAAAA 60.223 45.455 8.72 0.00 45.29 1.94
2746 2903 1.333619 GCTGGACAGCGACTTTGAAAA 59.666 47.619 8.72 0.00 45.29 2.29
2747 2904 0.944386 GCTGGACAGCGACTTTGAAA 59.056 50.000 8.72 0.00 45.29 2.69
2748 2905 2.616969 GCTGGACAGCGACTTTGAA 58.383 52.632 8.72 0.00 45.29 2.69
2749 2906 4.361253 GCTGGACAGCGACTTTGA 57.639 55.556 8.72 0.00 45.29 2.69
2758 2915 5.105146 ACCTATAAAAGTCTGAGCTGGACAG 60.105 44.000 15.84 6.84 36.29 3.51
2759 2916 4.777896 ACCTATAAAAGTCTGAGCTGGACA 59.222 41.667 15.84 0.00 36.29 4.02
2760 2917 5.346181 ACCTATAAAAGTCTGAGCTGGAC 57.654 43.478 0.00 0.00 0.00 4.02
2761 2918 6.839134 TCATACCTATAAAAGTCTGAGCTGGA 59.161 38.462 0.00 0.00 0.00 3.86
2762 2919 7.055667 TCATACCTATAAAAGTCTGAGCTGG 57.944 40.000 0.00 0.00 0.00 4.85
2763 2920 9.632807 GTATCATACCTATAAAAGTCTGAGCTG 57.367 37.037 0.00 0.00 0.00 4.24
2764 2921 8.808092 GGTATCATACCTATAAAAGTCTGAGCT 58.192 37.037 6.59 0.00 45.52 4.09
2765 2922 8.989653 GGTATCATACCTATAAAAGTCTGAGC 57.010 38.462 6.59 0.00 45.52 4.26
2781 2938 7.545965 GCATGTGTTATAGAGTGGGTATCATAC 59.454 40.741 0.00 0.00 0.00 2.39
2782 2939 7.234577 TGCATGTGTTATAGAGTGGGTATCATA 59.765 37.037 0.00 0.00 0.00 2.15
2783 2940 6.043127 TGCATGTGTTATAGAGTGGGTATCAT 59.957 38.462 0.00 0.00 0.00 2.45
2784 2941 5.365314 TGCATGTGTTATAGAGTGGGTATCA 59.635 40.000 0.00 0.00 0.00 2.15
2785 2942 5.696724 GTGCATGTGTTATAGAGTGGGTATC 59.303 44.000 0.00 0.00 0.00 2.24
2786 2943 5.454755 GGTGCATGTGTTATAGAGTGGGTAT 60.455 44.000 0.00 0.00 0.00 2.73
2787 2944 4.141801 GGTGCATGTGTTATAGAGTGGGTA 60.142 45.833 0.00 0.00 0.00 3.69
2788 2945 3.370527 GGTGCATGTGTTATAGAGTGGGT 60.371 47.826 0.00 0.00 0.00 4.51
2789 2946 3.206150 GGTGCATGTGTTATAGAGTGGG 58.794 50.000 0.00 0.00 0.00 4.61
2790 2947 3.118261 AGGGTGCATGTGTTATAGAGTGG 60.118 47.826 0.00 0.00 0.00 4.00
2791 2948 4.142609 AGGGTGCATGTGTTATAGAGTG 57.857 45.455 0.00 0.00 0.00 3.51
2792 2949 4.202264 GCTAGGGTGCATGTGTTATAGAGT 60.202 45.833 0.00 0.00 0.00 3.24
2793 2950 4.310769 GCTAGGGTGCATGTGTTATAGAG 58.689 47.826 0.00 0.00 0.00 2.43
2794 2951 3.071023 GGCTAGGGTGCATGTGTTATAGA 59.929 47.826 0.00 0.00 34.04 1.98
2795 2952 3.181455 TGGCTAGGGTGCATGTGTTATAG 60.181 47.826 0.00 0.00 34.04 1.31
2796 2953 2.774809 TGGCTAGGGTGCATGTGTTATA 59.225 45.455 0.00 0.00 34.04 0.98
2797 2954 1.563879 TGGCTAGGGTGCATGTGTTAT 59.436 47.619 0.00 0.00 34.04 1.89
2798 2955 0.988063 TGGCTAGGGTGCATGTGTTA 59.012 50.000 0.00 0.00 34.04 2.41
2799 2956 0.609131 GTGGCTAGGGTGCATGTGTT 60.609 55.000 0.00 0.00 34.04 3.32
2800 2957 1.002134 GTGGCTAGGGTGCATGTGT 60.002 57.895 0.00 0.00 34.04 3.72
2801 2958 0.394762 ATGTGGCTAGGGTGCATGTG 60.395 55.000 0.00 0.00 34.04 3.21
2802 2959 1.141657 CTATGTGGCTAGGGTGCATGT 59.858 52.381 0.00 0.00 34.04 3.21
2803 2960 1.141657 ACTATGTGGCTAGGGTGCATG 59.858 52.381 0.00 0.00 34.04 4.06
2804 2961 1.141657 CACTATGTGGCTAGGGTGCAT 59.858 52.381 0.00 0.00 34.04 3.96
2805 2962 0.541392 CACTATGTGGCTAGGGTGCA 59.459 55.000 0.00 0.00 34.04 4.57
2806 2963 3.386543 CACTATGTGGCTAGGGTGC 57.613 57.895 0.00 0.00 0.00 5.01
2816 2973 3.449018 AGAGAGGTTGTAGCCACTATGTG 59.551 47.826 0.00 0.00 29.63 3.21
2817 2974 3.702045 GAGAGAGGTTGTAGCCACTATGT 59.298 47.826 0.00 0.00 29.63 2.29
2818 2975 3.957497 AGAGAGAGGTTGTAGCCACTATG 59.043 47.826 0.00 0.00 29.63 2.23
2819 2976 4.211920 GAGAGAGAGGTTGTAGCCACTAT 58.788 47.826 0.00 0.00 29.63 2.12
2820 2977 3.622630 GAGAGAGAGGTTGTAGCCACTA 58.377 50.000 0.00 0.00 29.63 2.74
2821 2978 2.452505 GAGAGAGAGGTTGTAGCCACT 58.547 52.381 0.00 0.00 32.15 4.00
2822 2979 1.478916 GGAGAGAGAGGTTGTAGCCAC 59.521 57.143 0.00 0.00 0.00 5.01
2823 2980 1.853963 GGAGAGAGAGGTTGTAGCCA 58.146 55.000 0.00 0.00 0.00 4.75
2824 2981 0.741915 CGGAGAGAGAGGTTGTAGCC 59.258 60.000 0.00 0.00 0.00 3.93
2825 2982 1.402613 GTCGGAGAGAGAGGTTGTAGC 59.597 57.143 0.00 0.00 36.95 3.58
2826 2983 2.018515 GGTCGGAGAGAGAGGTTGTAG 58.981 57.143 0.00 0.00 36.95 2.74
2827 2984 1.353358 TGGTCGGAGAGAGAGGTTGTA 59.647 52.381 0.00 0.00 36.95 2.41
2828 2985 0.112606 TGGTCGGAGAGAGAGGTTGT 59.887 55.000 0.00 0.00 36.95 3.32
2829 2986 1.203523 CTTGGTCGGAGAGAGAGGTTG 59.796 57.143 0.00 0.00 36.95 3.77
2830 2987 1.075698 TCTTGGTCGGAGAGAGAGGTT 59.924 52.381 0.00 0.00 36.95 3.50
2831 2988 0.699399 TCTTGGTCGGAGAGAGAGGT 59.301 55.000 0.00 0.00 36.95 3.85
2832 2989 1.748493 CTTCTTGGTCGGAGAGAGAGG 59.252 57.143 0.00 0.00 36.95 3.69
2833 2990 2.422127 GTCTTCTTGGTCGGAGAGAGAG 59.578 54.545 0.00 0.00 36.95 3.20
2834 2991 2.438411 GTCTTCTTGGTCGGAGAGAGA 58.562 52.381 0.00 0.00 36.95 3.10
2835 2992 1.474879 GGTCTTCTTGGTCGGAGAGAG 59.525 57.143 0.00 0.00 36.95 3.20
2836 2993 1.203013 TGGTCTTCTTGGTCGGAGAGA 60.203 52.381 0.00 0.00 36.95 3.10
2837 2994 1.203523 CTGGTCTTCTTGGTCGGAGAG 59.796 57.143 0.00 0.00 36.95 3.20
2838 2995 1.257743 CTGGTCTTCTTGGTCGGAGA 58.742 55.000 0.00 0.00 0.00 3.71
2839 2996 0.247736 CCTGGTCTTCTTGGTCGGAG 59.752 60.000 0.00 0.00 0.00 4.63
2840 2997 1.192146 CCCTGGTCTTCTTGGTCGGA 61.192 60.000 0.00 0.00 0.00 4.55
2841 2998 1.296715 CCCTGGTCTTCTTGGTCGG 59.703 63.158 0.00 0.00 0.00 4.79
2842 2999 0.396811 AACCCTGGTCTTCTTGGTCG 59.603 55.000 0.00 0.00 0.00 4.79
2843 3000 2.158667 TCAAACCCTGGTCTTCTTGGTC 60.159 50.000 0.00 0.00 0.00 4.02
2844 3001 1.850345 TCAAACCCTGGTCTTCTTGGT 59.150 47.619 0.00 0.00 0.00 3.67
2845 3002 2.623416 GTTCAAACCCTGGTCTTCTTGG 59.377 50.000 0.00 0.00 0.00 3.61
2846 3003 2.623416 GGTTCAAACCCTGGTCTTCTTG 59.377 50.000 0.10 0.00 43.43 3.02
2847 3004 2.945456 GGTTCAAACCCTGGTCTTCTT 58.055 47.619 0.10 0.00 43.43 2.52
2848 3005 2.658807 GGTTCAAACCCTGGTCTTCT 57.341 50.000 0.10 0.00 43.43 2.85
2865 3022 2.559705 GGAAAATGATGGAACCTGGGGT 60.560 50.000 0.00 0.00 37.65 4.95
2866 3023 2.110578 GGAAAATGATGGAACCTGGGG 58.889 52.381 0.00 0.00 0.00 4.96
2867 3024 2.110578 GGGAAAATGATGGAACCTGGG 58.889 52.381 0.00 0.00 0.00 4.45
2868 3025 2.110578 GGGGAAAATGATGGAACCTGG 58.889 52.381 0.00 0.00 0.00 4.45
2869 3026 2.497273 GTGGGGAAAATGATGGAACCTG 59.503 50.000 0.00 0.00 0.00 4.00
2870 3027 2.820178 GTGGGGAAAATGATGGAACCT 58.180 47.619 0.00 0.00 0.00 3.50
2871 3028 1.476488 CGTGGGGAAAATGATGGAACC 59.524 52.381 0.00 0.00 0.00 3.62
2872 3029 2.167662 ACGTGGGGAAAATGATGGAAC 58.832 47.619 0.00 0.00 0.00 3.62
2873 3030 2.595750 ACGTGGGGAAAATGATGGAA 57.404 45.000 0.00 0.00 0.00 3.53
2874 3031 2.678479 CGTACGTGGGGAAAATGATGGA 60.678 50.000 7.22 0.00 0.00 3.41
2875 3032 1.668751 CGTACGTGGGGAAAATGATGG 59.331 52.381 7.22 0.00 0.00 3.51
2876 3033 2.352388 ACGTACGTGGGGAAAATGATG 58.648 47.619 22.14 0.00 0.00 3.07
2877 3034 2.773993 ACGTACGTGGGGAAAATGAT 57.226 45.000 22.14 0.00 0.00 2.45
2878 3035 3.891422 ATACGTACGTGGGGAAAATGA 57.109 42.857 30.25 6.91 0.00 2.57
2879 3036 3.933955 TGAATACGTACGTGGGGAAAATG 59.066 43.478 30.25 0.00 0.00 2.32
2880 3037 4.205065 TGAATACGTACGTGGGGAAAAT 57.795 40.909 30.25 11.35 0.00 1.82
2881 3038 3.674528 TGAATACGTACGTGGGGAAAA 57.325 42.857 30.25 9.30 0.00 2.29
2882 3039 3.523547 CATGAATACGTACGTGGGGAAA 58.476 45.455 30.25 10.09 0.00 3.13
2883 3040 2.159071 CCATGAATACGTACGTGGGGAA 60.159 50.000 30.25 10.89 38.91 3.97
2884 3041 1.409790 CCATGAATACGTACGTGGGGA 59.590 52.381 30.25 11.31 38.91 4.81
2885 3042 1.860676 CCATGAATACGTACGTGGGG 58.139 55.000 30.25 16.97 38.91 4.96
2887 3044 1.214367 GCCCATGAATACGTACGTGG 58.786 55.000 30.25 20.78 41.31 4.94
2888 3045 1.214367 GGCCCATGAATACGTACGTG 58.786 55.000 30.25 12.49 0.00 4.49
2889 3046 0.825410 TGGCCCATGAATACGTACGT 59.175 50.000 25.98 25.98 0.00 3.57
2890 3047 1.214367 GTGGCCCATGAATACGTACG 58.786 55.000 15.01 15.01 0.00 3.67
2891 3048 1.214367 CGTGGCCCATGAATACGTAC 58.786 55.000 0.00 0.00 0.00 3.67
2892 3049 0.105224 CCGTGGCCCATGAATACGTA 59.895 55.000 3.97 0.00 33.28 3.57
2893 3050 1.153249 CCGTGGCCCATGAATACGT 60.153 57.895 3.97 0.00 33.28 3.57
2894 3051 1.891919 CCCGTGGCCCATGAATACG 60.892 63.158 3.97 0.43 34.78 3.06
2895 3052 1.528309 CCCCGTGGCCCATGAATAC 60.528 63.158 3.97 0.00 0.00 1.89
2896 3053 2.004120 ACCCCGTGGCCCATGAATA 61.004 57.895 3.97 0.00 33.59 1.75
2897 3054 3.346734 ACCCCGTGGCCCATGAAT 61.347 61.111 3.97 0.00 33.59 2.57
2898 3055 4.358841 CACCCCGTGGCCCATGAA 62.359 66.667 3.97 0.00 33.59 2.57
2935 3092 7.745620 AGAGAAGACAAATAAACGAAATGGT 57.254 32.000 0.00 0.00 0.00 3.55
2948 3105 9.981114 AACAAAAAGAAGAAAAGAGAAGACAAA 57.019 25.926 0.00 0.00 0.00 2.83
2949 3106 9.981114 AAACAAAAAGAAGAAAAGAGAAGACAA 57.019 25.926 0.00 0.00 0.00 3.18
2950 3107 9.981114 AAAACAAAAAGAAGAAAAGAGAAGACA 57.019 25.926 0.00 0.00 0.00 3.41
3295 3463 8.098220 AGGGCAAAATATTGAAATTCACAAAC 57.902 30.769 0.00 0.00 38.94 2.93
3468 4037 4.181309 AGACTTTTGAAACGGCAAACAA 57.819 36.364 0.00 0.00 37.48 2.83
3473 4042 4.742659 GCATAAAAGACTTTTGAAACGGCA 59.257 37.500 21.00 1.24 34.19 5.69
3496 4065 7.996098 TTCCAGAAACTAATCAAAACCTAGG 57.004 36.000 7.41 7.41 0.00 3.02
3515 4084 5.978322 GCCTAGACGTATAAAGACTTTCCAG 59.022 44.000 3.07 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.