Multiple sequence alignment - TraesCS1B01G028400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G028400 chr1B 100.000 2237 0 0 1 2237 13671066 13673302 0.000000e+00 4132
1 TraesCS1B01G028400 chr1B 90.391 947 49 6 629 1535 12340120 12339176 0.000000e+00 1206
2 TraesCS1B01G028400 chr1B 96.984 630 18 1 1 630 13633274 13633902 0.000000e+00 1057
3 TraesCS1B01G028400 chr1B 91.736 484 33 4 1757 2237 13678814 13679293 0.000000e+00 665
4 TraesCS1B01G028400 chr1B 91.423 478 37 3 1761 2237 12324115 12323641 0.000000e+00 652
5 TraesCS1B01G028400 chr1B 89.790 333 23 4 278 599 12340579 12340247 1.240000e-112 416
6 TraesCS1B01G028400 chr1B 88.411 302 28 3 1 298 12341405 12341107 7.600000e-95 357
7 TraesCS1B01G028400 chr1B 91.946 149 12 0 1600 1748 384430122 384430270 2.250000e-50 209
8 TraesCS1B01G028400 chrUn 90.677 1019 54 7 629 1607 2454644 2453627 0.000000e+00 1317
9 TraesCS1B01G028400 chrUn 94.802 481 23 1 1757 2237 2435673 2435195 0.000000e+00 749
10 TraesCS1B01G028400 chrUn 87.540 618 49 11 1 599 2455380 2454772 0.000000e+00 689
11 TraesCS1B01G028400 chrUn 89.961 259 25 1 629 887 2321986 2321729 1.280000e-87 333
12 TraesCS1B01G028400 chrUn 86.207 261 28 5 1 257 297887176 297887432 2.190000e-70 276
13 TraesCS1B01G028400 chrUn 96.053 76 3 0 555 630 2459607 2459532 8.390000e-25 124
14 TraesCS1B01G028400 chr1D 83.435 658 92 8 629 1276 9486149 9486799 1.480000e-166 595
15 TraesCS1B01G028400 chr1D 90.323 124 9 1 2 122 485095269 485095146 2.300000e-35 159
16 TraesCS1B01G028400 chr5D 94.631 149 8 0 1600 1748 91723041 91723189 4.800000e-57 231
17 TraesCS1B01G028400 chr5D 91.275 149 13 0 1600 1748 225748430 225748282 1.050000e-48 204
18 TraesCS1B01G028400 chr4B 92.617 149 11 0 1600 1748 42909999 42909851 4.840000e-52 215
19 TraesCS1B01G028400 chr4B 85.065 154 17 4 1 148 27271963 27272116 3.850000e-33 152
20 TraesCS1B01G028400 chr6D 93.662 142 9 0 1600 1741 427956094 427956235 1.740000e-51 213
21 TraesCS1B01G028400 chr6D 91.946 149 12 0 1600 1748 259284016 259284164 2.250000e-50 209
22 TraesCS1B01G028400 chr7D 93.056 144 10 0 1600 1743 634082289 634082432 6.260000e-51 211
23 TraesCS1B01G028400 chr4A 91.837 147 12 0 1600 1746 654825196 654825050 2.910000e-49 206
24 TraesCS1B01G028400 chr3D 91.275 149 13 0 1600 1748 175448130 175448278 1.050000e-48 204
25 TraesCS1B01G028400 chr2A 89.313 131 10 2 1 127 735693967 735694097 6.390000e-36 161
26 TraesCS1B01G028400 chr2A 88.636 132 9 4 2 128 158244359 158244229 2.970000e-34 156
27 TraesCS1B01G028400 chr6B 89.683 126 9 2 1 122 716541436 716541561 8.270000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G028400 chr1B 13671066 13673302 2236 False 4132.000000 4132 100.000000 1 2237 1 chr1B.!!$F2 2236
1 TraesCS1B01G028400 chr1B 13633274 13633902 628 False 1057.000000 1057 96.984000 1 630 1 chr1B.!!$F1 629
2 TraesCS1B01G028400 chr1B 12339176 12341405 2229 True 659.666667 1206 89.530667 1 1535 3 chr1B.!!$R2 1534
3 TraesCS1B01G028400 chrUn 2453627 2455380 1753 True 1003.000000 1317 89.108500 1 1607 2 chrUn.!!$R4 1606
4 TraesCS1B01G028400 chr1D 9486149 9486799 650 False 595.000000 595 83.435000 629 1276 1 chr1D.!!$F1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1653 1.014352 ACAAACGCAGACCACAAGTC 58.986 50.0 0.0 0.0 46.71 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2653 0.107165 AATTAACGGCTGAGGAGGGC 60.107 55.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 844 4.899457 TCCTCTGACTTTGGTTCAGACTTA 59.101 41.667 0.00 0.00 35.81 2.24
326 880 1.302949 GGGCCCACATGTCAGCTAA 59.697 57.895 19.95 0.00 0.00 3.09
490 1059 7.867403 AGCTTCATAACACCTAACAATTGTTTG 59.133 33.333 27.66 24.16 39.31 2.93
576 1145 2.910319 ACCCTACACAACTATTCTGGCA 59.090 45.455 0.00 0.00 0.00 4.92
600 1169 1.824852 TGCTCTCGGATAGCTCAAACA 59.175 47.619 15.24 0.00 40.73 2.83
841 1508 2.034878 AGCTTGTCACACTCACAGAGA 58.965 47.619 0.31 0.00 33.32 3.10
848 1515 5.052481 TGTCACACTCACAGAGATTCAAAG 58.948 41.667 0.31 0.00 33.32 2.77
914 1581 2.299013 ACCTCACGCTCAGTCACAAATA 59.701 45.455 0.00 0.00 0.00 1.40
943 1618 4.079970 CAAGTACCGCCTGATCTCCTATA 58.920 47.826 0.00 0.00 0.00 1.31
978 1653 1.014352 ACAAACGCAGACCACAAGTC 58.986 50.000 0.00 0.00 46.71 3.01
993 1668 4.023707 CCACAAGTCAAACACATCTTCCTC 60.024 45.833 0.00 0.00 0.00 3.71
1186 1861 0.613572 TGACCCTAGGCGTGTCATCA 60.614 55.000 13.54 1.92 34.28 3.07
1197 1872 2.389059 CGTGTCATCATCATCTCCGAC 58.611 52.381 0.00 0.00 0.00 4.79
1285 1960 5.353394 ACTCCAATATACACGGATGTTGT 57.647 39.130 0.00 0.00 40.48 3.32
1305 1980 3.457749 TGTGCATGTATCCCAGTATTCCA 59.542 43.478 0.00 0.00 0.00 3.53
1310 1985 5.183904 GCATGTATCCCAGTATTCCAAATCC 59.816 44.000 0.00 0.00 0.00 3.01
1318 1993 2.105993 AGTATTCCAAATCCCTACGGCC 59.894 50.000 0.00 0.00 0.00 6.13
1336 2029 6.605471 ACGGCCTATAAATCTGTGATGATA 57.395 37.500 0.00 0.00 0.00 2.15
1340 2033 7.052873 GGCCTATAAATCTGTGATGATATGCT 58.947 38.462 0.00 0.00 0.00 3.79
1350 2043 1.725706 GATGATATGCTGCTCAGTCGC 59.274 52.381 0.00 0.00 0.00 5.19
1351 2044 0.461135 TGATATGCTGCTCAGTCGCA 59.539 50.000 0.00 0.00 38.40 5.10
1356 2049 0.247460 TGCTGCTCAGTCGCATTACT 59.753 50.000 0.00 0.00 39.52 2.24
1392 2085 5.696260 TCGTGTACTTTGAATATTCTGCG 57.304 39.130 16.24 6.90 0.00 5.18
1409 2102 4.776349 TCTGCGGGAATAAGAAAAGCATA 58.224 39.130 0.00 0.00 32.49 3.14
1411 2104 6.530120 TCTGCGGGAATAAGAAAAGCATATA 58.470 36.000 0.00 0.00 32.49 0.86
1412 2105 7.168219 TCTGCGGGAATAAGAAAAGCATATAT 58.832 34.615 0.00 0.00 32.49 0.86
1413 2106 7.119699 TCTGCGGGAATAAGAAAAGCATATATG 59.880 37.037 8.45 8.45 32.49 1.78
1494 2209 2.224113 GGGTGACTCAAAGGTGTAACGA 60.224 50.000 0.00 0.00 38.12 3.85
1509 2224 1.188863 AACGATGTAACCCTACCGCT 58.811 50.000 0.00 0.00 0.00 5.52
1512 2227 1.134907 CGATGTAACCCTACCGCTGTT 60.135 52.381 0.00 0.00 0.00 3.16
1558 2273 1.533625 TTTTCCCAGACGGCAATCTG 58.466 50.000 9.03 9.03 44.91 2.90
1580 2295 2.038837 GCAACTCCAACGGGCCTAC 61.039 63.158 0.84 0.00 0.00 3.18
1581 2296 1.677552 CAACTCCAACGGGCCTACT 59.322 57.895 0.84 0.00 0.00 2.57
1582 2297 0.391263 CAACTCCAACGGGCCTACTC 60.391 60.000 0.84 0.00 0.00 2.59
1588 2303 1.339631 CCAACGGGCCTACTCATTTCA 60.340 52.381 0.84 0.00 0.00 2.69
1591 2306 3.366052 ACGGGCCTACTCATTTCATTT 57.634 42.857 0.84 0.00 0.00 2.32
1601 2316 3.244976 CTCATTTCATTTGCCCGTGTTC 58.755 45.455 0.00 0.00 0.00 3.18
1602 2317 2.890311 TCATTTCATTTGCCCGTGTTCT 59.110 40.909 0.00 0.00 0.00 3.01
1607 2322 1.879380 CATTTGCCCGTGTTCTCTTCA 59.121 47.619 0.00 0.00 0.00 3.02
1608 2323 2.270352 TTTGCCCGTGTTCTCTTCAT 57.730 45.000 0.00 0.00 0.00 2.57
1609 2324 1.522668 TTGCCCGTGTTCTCTTCATG 58.477 50.000 0.00 0.00 0.00 3.07
1610 2325 0.321564 TGCCCGTGTTCTCTTCATGG 60.322 55.000 0.00 0.00 40.50 3.66
1611 2326 0.036388 GCCCGTGTTCTCTTCATGGA 60.036 55.000 5.83 0.00 42.63 3.41
1612 2327 1.407437 GCCCGTGTTCTCTTCATGGAT 60.407 52.381 5.83 0.00 42.63 3.41
1613 2328 2.555199 CCCGTGTTCTCTTCATGGATC 58.445 52.381 5.83 0.00 42.63 3.36
1614 2329 2.093500 CCCGTGTTCTCTTCATGGATCA 60.093 50.000 5.83 0.00 42.63 2.92
1615 2330 3.432749 CCCGTGTTCTCTTCATGGATCAT 60.433 47.826 5.83 0.00 42.63 2.45
1616 2331 3.558829 CCGTGTTCTCTTCATGGATCATG 59.441 47.826 0.00 1.76 42.63 3.07
1625 2340 2.949447 TCATGGATCATGACCTCGAGA 58.051 47.619 15.71 0.00 44.60 4.04
1626 2341 3.299503 TCATGGATCATGACCTCGAGAA 58.700 45.455 15.71 0.00 44.60 2.87
1627 2342 3.706086 TCATGGATCATGACCTCGAGAAA 59.294 43.478 15.71 0.00 44.60 2.52
1628 2343 3.808466 TGGATCATGACCTCGAGAAAG 57.192 47.619 15.71 0.00 0.00 2.62
1629 2344 2.159043 TGGATCATGACCTCGAGAAAGC 60.159 50.000 15.71 0.28 0.00 3.51
1630 2345 2.123342 GATCATGACCTCGAGAAAGCG 58.877 52.381 15.71 0.00 0.00 4.68
1631 2346 1.173913 TCATGACCTCGAGAAAGCGA 58.826 50.000 15.71 1.68 38.74 4.93
1643 2358 6.332504 TCGAGAAAGCGAGAAATATGAAAC 57.667 37.500 0.00 0.00 35.01 2.78
1644 2359 6.100004 TCGAGAAAGCGAGAAATATGAAACT 58.900 36.000 0.00 0.00 35.01 2.66
1645 2360 6.035005 TCGAGAAAGCGAGAAATATGAAACTG 59.965 38.462 0.00 0.00 35.01 3.16
1646 2361 6.035005 CGAGAAAGCGAGAAATATGAAACTGA 59.965 38.462 0.00 0.00 0.00 3.41
1647 2362 7.254252 CGAGAAAGCGAGAAATATGAAACTGAT 60.254 37.037 0.00 0.00 0.00 2.90
1648 2363 8.273780 AGAAAGCGAGAAATATGAAACTGATT 57.726 30.769 0.00 0.00 0.00 2.57
1649 2364 8.734386 AGAAAGCGAGAAATATGAAACTGATTT 58.266 29.630 0.00 0.00 0.00 2.17
1650 2365 9.346725 GAAAGCGAGAAATATGAAACTGATTTT 57.653 29.630 0.00 0.00 0.00 1.82
1654 2369 9.935682 GCGAGAAATATGAAACTGATTTTATCA 57.064 29.630 0.00 0.00 37.76 2.15
1668 2383 6.927416 TGATTTTATCAGCATTTGAGCAACT 58.073 32.000 0.00 0.00 39.68 3.16
1669 2384 7.031372 TGATTTTATCAGCATTTGAGCAACTC 58.969 34.615 0.00 0.00 39.68 3.01
1670 2385 6.579666 TTTTATCAGCATTTGAGCAACTCT 57.420 33.333 0.00 0.00 39.68 3.24
1671 2386 5.808042 TTATCAGCATTTGAGCAACTCTC 57.192 39.130 0.00 0.00 39.68 3.20
1684 2399 6.348621 GAGCAACTCTCAAATCTTCAGATC 57.651 41.667 0.00 0.00 41.51 2.75
1685 2400 5.802465 AGCAACTCTCAAATCTTCAGATCA 58.198 37.500 0.00 0.00 32.75 2.92
1686 2401 6.236409 AGCAACTCTCAAATCTTCAGATCAA 58.764 36.000 0.00 0.00 32.75 2.57
1687 2402 6.885376 AGCAACTCTCAAATCTTCAGATCAAT 59.115 34.615 0.00 0.00 32.75 2.57
1688 2403 7.393796 AGCAACTCTCAAATCTTCAGATCAATT 59.606 33.333 0.00 0.00 32.75 2.32
1689 2404 8.027771 GCAACTCTCAAATCTTCAGATCAATTT 58.972 33.333 0.00 0.00 32.75 1.82
1690 2405 9.909644 CAACTCTCAAATCTTCAGATCAATTTT 57.090 29.630 0.00 0.00 32.75 1.82
1692 2407 9.293404 ACTCTCAAATCTTCAGATCAATTTTCA 57.707 29.630 0.00 0.00 32.75 2.69
1711 2426 9.949174 AATTTTCATAAAAGTGGATTGTTTTGC 57.051 25.926 0.00 0.00 33.22 3.68
1712 2427 8.729805 TTTTCATAAAAGTGGATTGTTTTGCT 57.270 26.923 0.00 0.00 0.00 3.91
1713 2428 8.729805 TTTCATAAAAGTGGATTGTTTTGCTT 57.270 26.923 0.00 0.00 0.00 3.91
1714 2429 8.729805 TTCATAAAAGTGGATTGTTTTGCTTT 57.270 26.923 0.00 0.00 0.00 3.51
1715 2430 8.140677 TCATAAAAGTGGATTGTTTTGCTTTG 57.859 30.769 0.00 0.00 0.00 2.77
1716 2431 5.816449 AAAAGTGGATTGTTTTGCTTTGG 57.184 34.783 0.00 0.00 0.00 3.28
1717 2432 4.751767 AAGTGGATTGTTTTGCTTTGGA 57.248 36.364 0.00 0.00 0.00 3.53
1718 2433 4.326504 AGTGGATTGTTTTGCTTTGGAG 57.673 40.909 0.00 0.00 0.00 3.86
1719 2434 3.960102 AGTGGATTGTTTTGCTTTGGAGA 59.040 39.130 0.00 0.00 0.00 3.71
1720 2435 4.051237 GTGGATTGTTTTGCTTTGGAGAC 58.949 43.478 0.00 0.00 0.00 3.36
1721 2436 3.243367 TGGATTGTTTTGCTTTGGAGACG 60.243 43.478 0.00 0.00 0.00 4.18
1722 2437 2.202295 TTGTTTTGCTTTGGAGACGC 57.798 45.000 0.00 0.00 0.00 5.19
1723 2438 1.388547 TGTTTTGCTTTGGAGACGCT 58.611 45.000 0.00 0.00 0.00 5.07
1724 2439 1.333619 TGTTTTGCTTTGGAGACGCTC 59.666 47.619 0.00 0.00 0.00 5.03
1725 2440 1.333619 GTTTTGCTTTGGAGACGCTCA 59.666 47.619 8.71 0.00 31.08 4.26
1726 2441 1.674359 TTTGCTTTGGAGACGCTCAA 58.326 45.000 8.71 0.00 31.08 3.02
1727 2442 1.229428 TTGCTTTGGAGACGCTCAAG 58.771 50.000 8.71 6.08 31.08 3.02
1728 2443 0.392706 TGCTTTGGAGACGCTCAAGA 59.607 50.000 8.71 0.00 31.08 3.02
1729 2444 0.793250 GCTTTGGAGACGCTCAAGAC 59.207 55.000 8.71 0.36 31.08 3.01
1730 2445 1.063806 CTTTGGAGACGCTCAAGACG 58.936 55.000 8.71 0.00 31.08 4.18
1731 2446 0.671796 TTTGGAGACGCTCAAGACGA 59.328 50.000 8.71 0.00 31.08 4.20
1732 2447 0.241213 TTGGAGACGCTCAAGACGAG 59.759 55.000 8.71 0.00 45.37 4.18
1733 2448 1.137825 GGAGACGCTCAAGACGAGG 59.862 63.158 8.71 0.00 42.55 4.63
1734 2449 1.515304 GAGACGCTCAAGACGAGGC 60.515 63.158 0.00 0.00 42.55 4.70
1735 2450 2.507324 GACGCTCAAGACGAGGCC 60.507 66.667 0.00 0.00 42.55 5.19
1736 2451 3.282745 GACGCTCAAGACGAGGCCA 62.283 63.158 5.01 0.00 42.55 5.36
1737 2452 2.048222 CGCTCAAGACGAGGCCAA 60.048 61.111 5.01 0.00 42.55 4.52
1738 2453 2.383527 CGCTCAAGACGAGGCCAAC 61.384 63.158 5.01 0.00 42.55 3.77
1739 2454 2.035442 GCTCAAGACGAGGCCAACC 61.035 63.158 5.01 0.00 42.55 3.77
1751 2466 2.385013 GGCCAACCTATTTGCTTTGG 57.615 50.000 0.00 0.00 41.35 3.28
1752 2467 1.066215 GGCCAACCTATTTGCTTTGGG 60.066 52.381 0.00 0.00 39.20 4.12
1753 2468 1.066215 GCCAACCTATTTGCTTTGGGG 60.066 52.381 1.61 0.00 39.20 4.96
1754 2469 2.534990 CCAACCTATTTGCTTTGGGGA 58.465 47.619 0.00 0.00 35.76 4.81
1755 2470 3.106827 CCAACCTATTTGCTTTGGGGAT 58.893 45.455 0.00 0.00 35.76 3.85
1756 2471 3.118665 CCAACCTATTTGCTTTGGGGATG 60.119 47.826 0.00 0.00 35.76 3.51
1757 2472 3.473113 ACCTATTTGCTTTGGGGATGT 57.527 42.857 0.00 0.00 0.00 3.06
1758 2473 3.365472 ACCTATTTGCTTTGGGGATGTC 58.635 45.455 0.00 0.00 0.00 3.06
1759 2474 2.358898 CCTATTTGCTTTGGGGATGTCG 59.641 50.000 0.00 0.00 0.00 4.35
1760 2475 1.923356 ATTTGCTTTGGGGATGTCGT 58.077 45.000 0.00 0.00 0.00 4.34
1761 2476 0.958091 TTTGCTTTGGGGATGTCGTG 59.042 50.000 0.00 0.00 0.00 4.35
1762 2477 0.109532 TTGCTTTGGGGATGTCGTGA 59.890 50.000 0.00 0.00 0.00 4.35
1763 2478 0.327924 TGCTTTGGGGATGTCGTGAT 59.672 50.000 0.00 0.00 0.00 3.06
1764 2479 1.017387 GCTTTGGGGATGTCGTGATC 58.983 55.000 0.00 0.00 0.00 2.92
1765 2480 1.290203 CTTTGGGGATGTCGTGATCG 58.710 55.000 0.00 0.00 38.55 3.69
1766 2481 0.742990 TTTGGGGATGTCGTGATCGC 60.743 55.000 0.00 0.00 36.96 4.58
1767 2482 1.613317 TTGGGGATGTCGTGATCGCT 61.613 55.000 4.48 0.00 35.98 4.93
1768 2483 1.144057 GGGGATGTCGTGATCGCTT 59.856 57.895 4.48 0.00 35.98 4.68
1769 2484 0.462047 GGGGATGTCGTGATCGCTTT 60.462 55.000 4.48 0.00 35.98 3.51
1770 2485 1.202486 GGGGATGTCGTGATCGCTTTA 60.202 52.381 4.48 0.00 35.98 1.85
1771 2486 2.128035 GGGATGTCGTGATCGCTTTAG 58.872 52.381 4.48 0.00 36.96 1.85
1772 2487 2.128035 GGATGTCGTGATCGCTTTAGG 58.872 52.381 4.48 0.00 36.96 2.69
1773 2488 2.481449 GGATGTCGTGATCGCTTTAGGT 60.481 50.000 4.48 0.00 36.96 3.08
1774 2489 2.736144 TGTCGTGATCGCTTTAGGTT 57.264 45.000 4.48 0.00 36.96 3.50
1775 2490 2.333926 TGTCGTGATCGCTTTAGGTTG 58.666 47.619 4.48 0.00 36.96 3.77
1776 2491 2.288579 TGTCGTGATCGCTTTAGGTTGT 60.289 45.455 4.48 0.00 36.96 3.32
1777 2492 2.344741 GTCGTGATCGCTTTAGGTTGTC 59.655 50.000 4.48 0.00 36.96 3.18
1778 2493 2.230508 TCGTGATCGCTTTAGGTTGTCT 59.769 45.455 4.48 0.00 36.96 3.41
1779 2494 3.441222 TCGTGATCGCTTTAGGTTGTCTA 59.559 43.478 4.48 0.00 36.96 2.59
1780 2495 4.082625 TCGTGATCGCTTTAGGTTGTCTAA 60.083 41.667 4.48 0.00 35.29 2.10
1781 2496 4.624024 CGTGATCGCTTTAGGTTGTCTAAA 59.376 41.667 4.48 0.00 43.45 1.85
1782 2497 5.291128 CGTGATCGCTTTAGGTTGTCTAAAT 59.709 40.000 4.48 0.00 44.28 1.40
1783 2498 6.478588 GTGATCGCTTTAGGTTGTCTAAATG 58.521 40.000 0.00 0.00 44.28 2.32
1784 2499 6.092259 GTGATCGCTTTAGGTTGTCTAAATGT 59.908 38.462 0.00 0.00 44.28 2.71
1785 2500 5.856126 TCGCTTTAGGTTGTCTAAATGTG 57.144 39.130 0.00 0.00 44.28 3.21
1786 2501 5.302360 TCGCTTTAGGTTGTCTAAATGTGT 58.698 37.500 0.00 0.00 44.28 3.72
1787 2502 6.457355 TCGCTTTAGGTTGTCTAAATGTGTA 58.543 36.000 0.00 0.00 44.28 2.90
1788 2503 6.930164 TCGCTTTAGGTTGTCTAAATGTGTAA 59.070 34.615 0.00 0.00 44.28 2.41
1789 2504 7.013529 CGCTTTAGGTTGTCTAAATGTGTAAC 58.986 38.462 0.00 0.00 44.28 2.50
1790 2505 7.303261 GCTTTAGGTTGTCTAAATGTGTAACC 58.697 38.462 0.00 0.00 44.28 2.85
1791 2506 7.574404 GCTTTAGGTTGTCTAAATGTGTAACCC 60.574 40.741 0.00 0.00 44.28 4.11
1792 2507 5.578157 AGGTTGTCTAAATGTGTAACCCT 57.422 39.130 0.00 0.00 38.60 4.34
1793 2508 6.691255 AGGTTGTCTAAATGTGTAACCCTA 57.309 37.500 0.00 0.00 38.60 3.53
1794 2509 6.470278 AGGTTGTCTAAATGTGTAACCCTAC 58.530 40.000 0.00 0.00 38.60 3.18
1795 2510 5.645067 GGTTGTCTAAATGTGTAACCCTACC 59.355 44.000 0.00 0.00 34.36 3.18
1796 2511 6.232692 GTTGTCTAAATGTGTAACCCTACCA 58.767 40.000 0.00 0.00 34.36 3.25
1797 2512 6.630203 TGTCTAAATGTGTAACCCTACCAT 57.370 37.500 0.00 0.00 34.36 3.55
1798 2513 7.736881 TGTCTAAATGTGTAACCCTACCATA 57.263 36.000 0.00 0.00 34.36 2.74
1799 2514 8.326765 TGTCTAAATGTGTAACCCTACCATAT 57.673 34.615 0.00 0.00 34.36 1.78
1800 2515 8.774183 TGTCTAAATGTGTAACCCTACCATATT 58.226 33.333 0.00 0.00 34.36 1.28
1801 2516 9.623000 GTCTAAATGTGTAACCCTACCATATTT 57.377 33.333 0.00 0.00 34.36 1.40
1802 2517 9.621629 TCTAAATGTGTAACCCTACCATATTTG 57.378 33.333 0.00 0.00 34.36 2.32
1803 2518 7.654022 AAATGTGTAACCCTACCATATTTGG 57.346 36.000 0.00 0.00 42.80 3.28
1805 2520 6.887886 TGTGTAACCCTACCATATTTGGTA 57.112 37.500 13.60 13.60 46.57 3.25
1806 2521 6.652053 TGTGTAACCCTACCATATTTGGTAC 58.348 40.000 10.66 4.21 46.57 3.34
1807 2522 6.444493 TGTGTAACCCTACCATATTTGGTACT 59.556 38.462 10.66 0.37 46.57 2.73
1808 2523 7.364939 TGTGTAACCCTACCATATTTGGTACTC 60.365 40.741 10.66 5.23 46.57 2.59
1816 2531 5.097742 CCATATTTGGTACTCCACACTGA 57.902 43.478 0.00 0.00 44.22 3.41
1817 2532 5.684704 CCATATTTGGTACTCCACACTGAT 58.315 41.667 0.00 0.00 44.22 2.90
1818 2533 6.122277 CCATATTTGGTACTCCACACTGATT 58.878 40.000 0.00 0.00 44.22 2.57
1819 2534 7.279615 CCATATTTGGTACTCCACACTGATTA 58.720 38.462 0.00 0.00 44.22 1.75
1820 2535 7.939039 CCATATTTGGTACTCCACACTGATTAT 59.061 37.037 0.00 0.00 44.22 1.28
1821 2536 8.777413 CATATTTGGTACTCCACACTGATTATG 58.223 37.037 0.00 0.00 44.22 1.90
1822 2537 4.753516 TGGTACTCCACACTGATTATGG 57.246 45.455 0.00 0.00 39.03 2.74
1823 2538 3.454447 TGGTACTCCACACTGATTATGGG 59.546 47.826 0.00 0.00 39.03 4.00
1824 2539 3.709653 GGTACTCCACACTGATTATGGGA 59.290 47.826 0.00 0.00 34.03 4.37
1825 2540 3.914426 ACTCCACACTGATTATGGGAC 57.086 47.619 0.00 0.00 34.03 4.46
1840 2555 1.760613 TGGGACATTCACGAGGATACC 59.239 52.381 0.00 0.00 37.17 2.73
1841 2556 1.760613 GGGACATTCACGAGGATACCA 59.239 52.381 0.00 0.00 37.17 3.25
1842 2557 2.368875 GGGACATTCACGAGGATACCAT 59.631 50.000 0.00 0.00 37.17 3.55
1843 2558 3.393800 GGACATTCACGAGGATACCATG 58.606 50.000 0.00 0.00 37.17 3.66
1844 2559 3.393800 GACATTCACGAGGATACCATGG 58.606 50.000 11.19 11.19 37.17 3.66
1845 2560 2.104792 ACATTCACGAGGATACCATGGG 59.895 50.000 18.09 0.00 37.17 4.00
1846 2561 1.128200 TTCACGAGGATACCATGGGG 58.872 55.000 18.09 0.00 41.29 4.96
1847 2562 0.762842 TCACGAGGATACCATGGGGG 60.763 60.000 18.09 0.00 44.81 5.40
1848 2563 2.147387 ACGAGGATACCATGGGGGC 61.147 63.158 18.09 3.97 42.05 5.80
1849 2564 2.895424 CGAGGATACCATGGGGGCC 61.895 68.421 18.09 13.49 42.05 5.80
1850 2565 1.774217 GAGGATACCATGGGGGCCA 60.774 63.158 18.09 0.00 42.05 5.36
1851 2566 1.071904 AGGATACCATGGGGGCCAT 60.072 57.895 18.09 0.60 46.37 4.40
1858 2573 2.036242 ATGGGGGCCATGGGGTAT 60.036 61.111 15.13 0.00 43.39 2.73
1859 2574 1.708442 ATGGGGGCCATGGGGTATT 60.708 57.895 15.13 0.00 43.39 1.89
1860 2575 2.034827 ATGGGGGCCATGGGGTATTG 62.035 60.000 15.13 0.00 43.39 1.90
1861 2576 2.201210 GGGGCCATGGGGTATTGG 59.799 66.667 15.13 0.00 36.17 3.16
1862 2577 2.399607 GGGGCCATGGGGTATTGGA 61.400 63.158 15.13 0.00 36.17 3.53
1863 2578 1.152546 GGGCCATGGGGTATTGGAC 60.153 63.158 15.13 0.00 36.17 4.02
1864 2579 1.618030 GGCCATGGGGTATTGGACA 59.382 57.895 15.13 0.00 36.17 4.02
1865 2580 0.188342 GGCCATGGGGTATTGGACAT 59.812 55.000 15.13 0.00 36.17 3.06
1866 2581 1.412937 GGCCATGGGGTATTGGACATT 60.413 52.381 15.13 0.00 36.17 2.71
1867 2582 2.397597 GCCATGGGGTATTGGACATTT 58.602 47.619 15.13 0.00 36.17 2.32
1868 2583 2.102925 GCCATGGGGTATTGGACATTTG 59.897 50.000 15.13 0.00 36.17 2.32
1869 2584 3.641046 CCATGGGGTATTGGACATTTGA 58.359 45.455 2.85 0.00 0.00 2.69
1870 2585 3.638160 CCATGGGGTATTGGACATTTGAG 59.362 47.826 2.85 0.00 0.00 3.02
1871 2586 4.280819 CATGGGGTATTGGACATTTGAGT 58.719 43.478 0.00 0.00 0.00 3.41
1872 2587 5.445069 CATGGGGTATTGGACATTTGAGTA 58.555 41.667 0.00 0.00 0.00 2.59
1873 2588 5.522315 TGGGGTATTGGACATTTGAGTAA 57.478 39.130 0.00 0.00 0.00 2.24
1874 2589 6.086011 TGGGGTATTGGACATTTGAGTAAT 57.914 37.500 0.00 0.00 0.00 1.89
1875 2590 6.498538 TGGGGTATTGGACATTTGAGTAATT 58.501 36.000 0.00 0.00 0.00 1.40
1876 2591 6.957020 TGGGGTATTGGACATTTGAGTAATTT 59.043 34.615 0.00 0.00 0.00 1.82
1877 2592 7.093552 TGGGGTATTGGACATTTGAGTAATTTG 60.094 37.037 0.00 0.00 0.00 2.32
1878 2593 7.264947 GGGTATTGGACATTTGAGTAATTTGG 58.735 38.462 0.00 0.00 0.00 3.28
1879 2594 7.264947 GGTATTGGACATTTGAGTAATTTGGG 58.735 38.462 0.00 0.00 0.00 4.12
1880 2595 4.799564 TGGACATTTGAGTAATTTGGGC 57.200 40.909 0.00 0.00 0.00 5.36
1881 2596 3.513515 TGGACATTTGAGTAATTTGGGCC 59.486 43.478 0.00 0.00 0.00 5.80
1882 2597 3.513515 GGACATTTGAGTAATTTGGGCCA 59.486 43.478 0.00 0.00 0.00 5.36
1883 2598 4.020662 GGACATTTGAGTAATTTGGGCCAA 60.021 41.667 16.66 16.66 0.00 4.52
1884 2599 4.893608 ACATTTGAGTAATTTGGGCCAAC 58.106 39.130 20.79 8.42 0.00 3.77
1885 2600 4.592778 ACATTTGAGTAATTTGGGCCAACT 59.407 37.500 20.79 14.00 0.00 3.16
1886 2601 5.071653 ACATTTGAGTAATTTGGGCCAACTT 59.928 36.000 20.79 22.18 0.00 2.66
1887 2602 4.599047 TTGAGTAATTTGGGCCAACTTG 57.401 40.909 26.67 0.00 0.00 3.16
1888 2603 3.571590 TGAGTAATTTGGGCCAACTTGT 58.428 40.909 26.67 16.22 0.00 3.16
1889 2604 4.730966 TGAGTAATTTGGGCCAACTTGTA 58.269 39.130 26.67 10.80 0.00 2.41
1890 2605 4.521256 TGAGTAATTTGGGCCAACTTGTAC 59.479 41.667 26.67 19.08 0.00 2.90
1891 2606 4.475345 AGTAATTTGGGCCAACTTGTACA 58.525 39.130 26.67 9.36 0.00 2.90
1892 2607 3.744238 AATTTGGGCCAACTTGTACAC 57.256 42.857 20.79 0.00 0.00 2.90
1893 2608 2.145397 TTTGGGCCAACTTGTACACA 57.855 45.000 20.79 0.00 0.00 3.72
1894 2609 2.373335 TTGGGCCAACTTGTACACAT 57.627 45.000 16.66 0.00 0.00 3.21
1895 2610 3.510531 TTGGGCCAACTTGTACACATA 57.489 42.857 16.66 0.00 0.00 2.29
1896 2611 3.730215 TGGGCCAACTTGTACACATAT 57.270 42.857 2.13 0.00 0.00 1.78
1897 2612 4.846168 TGGGCCAACTTGTACACATATA 57.154 40.909 2.13 0.00 0.00 0.86
1898 2613 5.381184 TGGGCCAACTTGTACACATATAT 57.619 39.130 2.13 0.00 0.00 0.86
1899 2614 5.761205 TGGGCCAACTTGTACACATATATT 58.239 37.500 2.13 0.00 0.00 1.28
1900 2615 5.825679 TGGGCCAACTTGTACACATATATTC 59.174 40.000 2.13 0.00 0.00 1.75
1901 2616 6.062095 GGGCCAACTTGTACACATATATTCT 58.938 40.000 4.39 0.00 0.00 2.40
1902 2617 6.204882 GGGCCAACTTGTACACATATATTCTC 59.795 42.308 4.39 0.00 0.00 2.87
1903 2618 6.992715 GGCCAACTTGTACACATATATTCTCT 59.007 38.462 0.00 0.00 0.00 3.10
1904 2619 7.499232 GGCCAACTTGTACACATATATTCTCTT 59.501 37.037 0.00 0.00 0.00 2.85
1905 2620 9.542462 GCCAACTTGTACACATATATTCTCTTA 57.458 33.333 0.00 0.00 0.00 2.10
1921 2636 5.291905 TCTCTTACATTTTAGGGCTAGGC 57.708 43.478 8.00 8.00 0.00 3.93
1936 2651 2.836360 GGCCAGTCCATGCCCATG 60.836 66.667 0.00 1.28 41.97 3.66
1948 2663 3.496160 CCCATGGGCCCTCCTCAG 61.496 72.222 25.70 5.57 36.20 3.35
1949 2664 4.201122 CCATGGGCCCTCCTCAGC 62.201 72.222 25.70 0.00 36.20 4.26
1954 2669 3.081409 GGCCCTCCTCAGCCGTTA 61.081 66.667 0.00 0.00 39.87 3.18
1955 2670 2.666098 GGCCCTCCTCAGCCGTTAA 61.666 63.158 0.00 0.00 39.87 2.01
1956 2671 1.527370 GCCCTCCTCAGCCGTTAAT 59.473 57.895 0.00 0.00 0.00 1.40
1957 2672 0.107165 GCCCTCCTCAGCCGTTAATT 60.107 55.000 0.00 0.00 0.00 1.40
1958 2673 1.954927 CCCTCCTCAGCCGTTAATTC 58.045 55.000 0.00 0.00 0.00 2.17
1959 2674 1.209504 CCCTCCTCAGCCGTTAATTCA 59.790 52.381 0.00 0.00 0.00 2.57
1960 2675 2.355716 CCCTCCTCAGCCGTTAATTCAA 60.356 50.000 0.00 0.00 0.00 2.69
1961 2676 3.343617 CCTCCTCAGCCGTTAATTCAAA 58.656 45.455 0.00 0.00 0.00 2.69
1962 2677 3.375299 CCTCCTCAGCCGTTAATTCAAAG 59.625 47.826 0.00 0.00 0.00 2.77
1963 2678 4.253685 CTCCTCAGCCGTTAATTCAAAGA 58.746 43.478 0.00 0.00 0.00 2.52
1964 2679 4.253685 TCCTCAGCCGTTAATTCAAAGAG 58.746 43.478 0.00 0.00 0.00 2.85
1965 2680 4.020573 TCCTCAGCCGTTAATTCAAAGAGA 60.021 41.667 0.00 0.00 0.00 3.10
1966 2681 4.878397 CCTCAGCCGTTAATTCAAAGAGAT 59.122 41.667 0.00 0.00 0.00 2.75
1967 2682 5.007136 CCTCAGCCGTTAATTCAAAGAGATC 59.993 44.000 0.00 0.00 0.00 2.75
1968 2683 4.566759 TCAGCCGTTAATTCAAAGAGATCG 59.433 41.667 0.00 0.00 0.00 3.69
1969 2684 4.566759 CAGCCGTTAATTCAAAGAGATCGA 59.433 41.667 0.00 0.00 0.00 3.59
1970 2685 5.235186 CAGCCGTTAATTCAAAGAGATCGAT 59.765 40.000 0.00 0.00 0.00 3.59
1971 2686 5.235186 AGCCGTTAATTCAAAGAGATCGATG 59.765 40.000 0.54 0.00 0.00 3.84
1972 2687 5.234329 GCCGTTAATTCAAAGAGATCGATGA 59.766 40.000 0.54 0.00 0.00 2.92
1973 2688 6.073548 GCCGTTAATTCAAAGAGATCGATGAT 60.074 38.462 0.54 0.00 0.00 2.45
1974 2689 7.116376 GCCGTTAATTCAAAGAGATCGATGATA 59.884 37.037 0.54 0.00 0.00 2.15
1975 2690 8.642885 CCGTTAATTCAAAGAGATCGATGATAG 58.357 37.037 0.54 0.00 0.00 2.08
1976 2691 8.159077 CGTTAATTCAAAGAGATCGATGATAGC 58.841 37.037 0.54 0.00 0.00 2.97
1977 2692 6.702972 AATTCAAAGAGATCGATGATAGCG 57.297 37.500 0.54 0.00 0.00 4.26
1978 2693 4.166187 TCAAAGAGATCGATGATAGCGG 57.834 45.455 0.54 0.00 0.00 5.52
1979 2694 3.057245 TCAAAGAGATCGATGATAGCGGG 60.057 47.826 0.54 0.00 0.00 6.13
1980 2695 2.208132 AGAGATCGATGATAGCGGGT 57.792 50.000 0.54 0.00 0.00 5.28
1981 2696 1.815613 AGAGATCGATGATAGCGGGTG 59.184 52.381 0.54 0.00 0.00 4.61
1982 2697 0.244994 AGATCGATGATAGCGGGTGC 59.755 55.000 0.54 0.00 43.24 5.01
2002 2717 2.108362 CCCTATGGGCGGACGAAC 59.892 66.667 0.00 0.00 35.35 3.95
2003 2718 2.727392 CCCTATGGGCGGACGAACA 61.727 63.158 0.00 0.00 35.35 3.18
2004 2719 1.445942 CCTATGGGCGGACGAACAT 59.554 57.895 0.00 1.50 0.00 2.71
2005 2720 0.600255 CCTATGGGCGGACGAACATC 60.600 60.000 0.00 0.00 0.00 3.06
2006 2721 0.939577 CTATGGGCGGACGAACATCG 60.940 60.000 0.00 0.00 46.93 3.84
2007 2722 2.358193 TATGGGCGGACGAACATCGG 62.358 60.000 4.66 0.00 45.59 4.18
2013 2728 3.195698 GACGAACATCGGCTGGCC 61.196 66.667 0.00 0.00 46.20 5.36
2014 2729 4.778143 ACGAACATCGGCTGGCCC 62.778 66.667 0.00 0.00 45.59 5.80
2015 2730 4.776322 CGAACATCGGCTGGCCCA 62.776 66.667 0.00 0.00 36.00 5.36
2016 2731 2.825836 GAACATCGGCTGGCCCAG 60.826 66.667 6.32 6.32 34.12 4.45
2017 2732 3.628646 GAACATCGGCTGGCCCAGT 62.629 63.158 13.35 0.00 33.43 4.00
2018 2733 2.252072 GAACATCGGCTGGCCCAGTA 62.252 60.000 13.35 0.00 33.43 2.74
2019 2734 1.847798 AACATCGGCTGGCCCAGTAA 61.848 55.000 13.35 0.00 33.43 2.24
2020 2735 1.819632 CATCGGCTGGCCCAGTAAC 60.820 63.158 13.35 2.40 33.43 2.50
2021 2736 1.995626 ATCGGCTGGCCCAGTAACT 60.996 57.895 13.35 0.00 33.43 2.24
2022 2737 2.257409 ATCGGCTGGCCCAGTAACTG 62.257 60.000 13.35 0.70 33.43 3.16
2034 2749 2.162681 CAGTAACTGGGCTTTCAAGGG 58.837 52.381 0.00 0.00 0.00 3.95
2035 2750 0.888619 GTAACTGGGCTTTCAAGGGC 59.111 55.000 0.00 0.00 0.00 5.19
2036 2751 0.777446 TAACTGGGCTTTCAAGGGCT 59.223 50.000 0.00 0.00 0.00 5.19
2037 2752 0.829182 AACTGGGCTTTCAAGGGCTG 60.829 55.000 0.00 0.00 0.00 4.85
2038 2753 1.228675 CTGGGCTTTCAAGGGCTGT 60.229 57.895 0.00 0.00 0.00 4.40
2039 2754 0.829182 CTGGGCTTTCAAGGGCTGTT 60.829 55.000 0.00 0.00 0.00 3.16
2040 2755 0.398381 TGGGCTTTCAAGGGCTGTTT 60.398 50.000 0.00 0.00 0.00 2.83
2041 2756 1.133325 TGGGCTTTCAAGGGCTGTTTA 60.133 47.619 0.00 0.00 0.00 2.01
2042 2757 2.179427 GGGCTTTCAAGGGCTGTTTAT 58.821 47.619 0.00 0.00 0.00 1.40
2043 2758 2.567169 GGGCTTTCAAGGGCTGTTTATT 59.433 45.455 0.00 0.00 0.00 1.40
2044 2759 3.007940 GGGCTTTCAAGGGCTGTTTATTT 59.992 43.478 0.00 0.00 0.00 1.40
2045 2760 4.221924 GGGCTTTCAAGGGCTGTTTATTTA 59.778 41.667 0.00 0.00 0.00 1.40
2046 2761 5.104941 GGGCTTTCAAGGGCTGTTTATTTAT 60.105 40.000 0.00 0.00 0.00 1.40
2047 2762 6.406370 GGCTTTCAAGGGCTGTTTATTTATT 58.594 36.000 0.00 0.00 0.00 1.40
2048 2763 6.878923 GGCTTTCAAGGGCTGTTTATTTATTT 59.121 34.615 0.00 0.00 0.00 1.40
2049 2764 7.390440 GGCTTTCAAGGGCTGTTTATTTATTTT 59.610 33.333 0.00 0.00 0.00 1.82
2050 2765 8.783093 GCTTTCAAGGGCTGTTTATTTATTTTT 58.217 29.630 0.00 0.00 0.00 1.94
2069 2784 7.865530 ATTTTTATTTTGGGTGGGAACTAGT 57.134 32.000 0.00 0.00 0.00 2.57
2070 2785 7.678207 TTTTTATTTTGGGTGGGAACTAGTT 57.322 32.000 8.13 8.13 0.00 2.24
2071 2786 7.678207 TTTTATTTTGGGTGGGAACTAGTTT 57.322 32.000 10.02 0.00 0.00 2.66
2072 2787 7.678207 TTTATTTTGGGTGGGAACTAGTTTT 57.322 32.000 10.02 0.00 0.00 2.43
2073 2788 7.678207 TTATTTTGGGTGGGAACTAGTTTTT 57.322 32.000 10.02 0.00 0.00 1.94
2116 2831 7.931578 TTTTCAAGAATCGGGTGTTATATGT 57.068 32.000 0.00 0.00 0.00 2.29
2117 2832 7.931578 TTTCAAGAATCGGGTGTTATATGTT 57.068 32.000 0.00 0.00 0.00 2.71
2118 2833 7.931578 TTCAAGAATCGGGTGTTATATGTTT 57.068 32.000 0.00 0.00 0.00 2.83
2119 2834 7.931578 TCAAGAATCGGGTGTTATATGTTTT 57.068 32.000 0.00 0.00 0.00 2.43
2120 2835 9.451002 TTCAAGAATCGGGTGTTATATGTTTTA 57.549 29.630 0.00 0.00 0.00 1.52
2121 2836 8.885722 TCAAGAATCGGGTGTTATATGTTTTAC 58.114 33.333 0.00 0.00 0.00 2.01
2122 2837 8.670135 CAAGAATCGGGTGTTATATGTTTTACA 58.330 33.333 0.00 0.00 0.00 2.41
2123 2838 8.205131 AGAATCGGGTGTTATATGTTTTACAC 57.795 34.615 0.00 0.00 40.01 2.90
2124 2839 6.592798 ATCGGGTGTTATATGTTTTACACG 57.407 37.500 0.00 0.00 41.28 4.49
2125 2840 5.477510 TCGGGTGTTATATGTTTTACACGT 58.522 37.500 0.00 0.00 41.28 4.49
2126 2841 5.931146 TCGGGTGTTATATGTTTTACACGTT 59.069 36.000 0.00 0.00 41.28 3.99
2127 2842 6.426328 TCGGGTGTTATATGTTTTACACGTTT 59.574 34.615 0.00 0.00 41.28 3.60
2128 2843 7.041508 TCGGGTGTTATATGTTTTACACGTTTT 60.042 33.333 0.00 0.00 41.28 2.43
2129 2844 7.268872 CGGGTGTTATATGTTTTACACGTTTTC 59.731 37.037 0.00 0.00 41.28 2.29
2130 2845 7.538334 GGGTGTTATATGTTTTACACGTTTTCC 59.462 37.037 0.00 0.00 41.28 3.13
2131 2846 7.538334 GGTGTTATATGTTTTACACGTTTTCCC 59.462 37.037 0.00 0.00 41.28 3.97
2132 2847 8.291740 GTGTTATATGTTTTACACGTTTTCCCT 58.708 33.333 0.00 0.00 32.56 4.20
2133 2848 8.848182 TGTTATATGTTTTACACGTTTTCCCTT 58.152 29.630 0.00 0.00 0.00 3.95
2134 2849 9.681692 GTTATATGTTTTACACGTTTTCCCTTT 57.318 29.630 0.00 0.00 0.00 3.11
2137 2852 6.756299 TGTTTTACACGTTTTCCCTTTACT 57.244 33.333 0.00 0.00 0.00 2.24
2138 2853 7.155655 TGTTTTACACGTTTTCCCTTTACTT 57.844 32.000 0.00 0.00 0.00 2.24
2139 2854 8.273780 TGTTTTACACGTTTTCCCTTTACTTA 57.726 30.769 0.00 0.00 0.00 2.24
2140 2855 8.901793 TGTTTTACACGTTTTCCCTTTACTTAT 58.098 29.630 0.00 0.00 0.00 1.73
2145 2860 8.625786 ACACGTTTTCCCTTTACTTATATTGT 57.374 30.769 0.00 0.00 0.00 2.71
2146 2861 9.723601 ACACGTTTTCCCTTTACTTATATTGTA 57.276 29.630 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 844 1.281925 CCCCTAACAGGTCAGCCCAT 61.282 60.000 0.00 0.00 31.93 4.00
326 880 0.460987 GCTGGCTAGACTGTTCGCAT 60.461 55.000 0.00 0.00 0.00 4.73
576 1145 0.673437 GAGCTATCCGAGAGCAGCTT 59.327 55.000 17.01 0.00 44.17 3.74
841 1508 9.866798 GAGATGCTTCCTTTTTATTCTTTGAAT 57.133 29.630 0.00 0.00 0.00 2.57
848 1515 7.094634 TGAGTGTGAGATGCTTCCTTTTTATTC 60.095 37.037 0.00 0.00 0.00 1.75
914 1581 1.183549 CAGGCGGTACTTGTAGGAGT 58.816 55.000 0.00 0.00 0.00 3.85
943 1618 3.498397 CGTTTGTAGGATGTGAAGCAAGT 59.502 43.478 0.00 0.00 0.00 3.16
978 1653 6.402550 CCATAGTTTCGAGGAAGATGTGTTTG 60.403 42.308 0.00 0.00 0.00 2.93
979 1654 5.643777 CCATAGTTTCGAGGAAGATGTGTTT 59.356 40.000 0.00 0.00 0.00 2.83
981 1656 4.383118 CCCATAGTTTCGAGGAAGATGTGT 60.383 45.833 0.00 0.00 0.00 3.72
988 1663 3.118738 GCTCTTCCCATAGTTTCGAGGAA 60.119 47.826 0.76 0.76 35.38 3.36
993 1668 1.136305 TCCGCTCTTCCCATAGTTTCG 59.864 52.381 0.00 0.00 0.00 3.46
1276 1951 1.603802 GGGATACATGCACAACATCCG 59.396 52.381 10.64 0.00 36.64 4.18
1277 1952 2.620115 CTGGGATACATGCACAACATCC 59.380 50.000 9.07 9.07 36.64 3.51
1285 1960 4.787135 TTGGAATACTGGGATACATGCA 57.213 40.909 0.00 0.00 39.74 3.96
1318 1993 8.719560 AGCAGCATATCATCACAGATTTATAG 57.280 34.615 0.00 0.00 0.00 1.31
1356 2049 9.063615 TCAAAGTACACGAGCTATAGATTATCA 57.936 33.333 3.21 0.00 0.00 2.15
1409 2102 3.495100 GGAGAAGGCGACCATTCACATAT 60.495 47.826 0.00 0.00 0.00 1.78
1411 2104 1.407437 GGAGAAGGCGACCATTCACAT 60.407 52.381 0.00 0.00 0.00 3.21
1412 2105 0.036388 GGAGAAGGCGACCATTCACA 60.036 55.000 0.00 0.00 0.00 3.58
1413 2106 0.036388 TGGAGAAGGCGACCATTCAC 60.036 55.000 0.00 0.00 0.00 3.18
1494 2209 2.169144 GGTAACAGCGGTAGGGTTACAT 59.831 50.000 20.92 0.00 45.31 2.29
1512 2227 3.208922 TGGACCCATCCTAGAGAATGGTA 59.791 47.826 14.12 1.03 46.43 3.25
1542 2257 0.036388 GTTCAGATTGCCGTCTGGGA 60.036 55.000 13.54 3.13 44.51 4.37
1558 2273 2.943653 CCCGTTGGAGTTGCGTTC 59.056 61.111 0.00 0.00 0.00 3.95
1561 2276 3.599285 TAGGCCCGTTGGAGTTGCG 62.599 63.158 0.00 0.00 0.00 4.85
1580 2295 3.057315 AGAACACGGGCAAATGAAATGAG 60.057 43.478 0.00 0.00 0.00 2.90
1581 2296 2.890311 AGAACACGGGCAAATGAAATGA 59.110 40.909 0.00 0.00 0.00 2.57
1582 2297 3.057315 AGAGAACACGGGCAAATGAAATG 60.057 43.478 0.00 0.00 0.00 2.32
1588 2303 2.270352 TGAAGAGAACACGGGCAAAT 57.730 45.000 0.00 0.00 0.00 2.32
1591 2306 0.321564 CCATGAAGAGAACACGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
1607 2322 3.494048 GCTTTCTCGAGGTCATGATCCAT 60.494 47.826 13.56 0.00 0.00 3.41
1608 2323 2.159043 GCTTTCTCGAGGTCATGATCCA 60.159 50.000 13.56 0.00 0.00 3.41
1609 2324 2.478831 GCTTTCTCGAGGTCATGATCC 58.521 52.381 13.56 4.30 0.00 3.36
1610 2325 2.123342 CGCTTTCTCGAGGTCATGATC 58.877 52.381 13.56 0.00 0.00 2.92
1611 2326 1.751351 TCGCTTTCTCGAGGTCATGAT 59.249 47.619 13.56 0.00 34.09 2.45
1612 2327 1.173913 TCGCTTTCTCGAGGTCATGA 58.826 50.000 13.56 3.07 34.09 3.07
1613 2328 3.721625 TCGCTTTCTCGAGGTCATG 57.278 52.632 13.56 0.50 34.09 3.07
1620 2335 6.035005 CAGTTTCATATTTCTCGCTTTCTCGA 59.965 38.462 0.00 0.00 36.94 4.04
1621 2336 6.035005 TCAGTTTCATATTTCTCGCTTTCTCG 59.965 38.462 0.00 0.00 0.00 4.04
1622 2337 7.295952 TCAGTTTCATATTTCTCGCTTTCTC 57.704 36.000 0.00 0.00 0.00 2.87
1623 2338 7.856145 ATCAGTTTCATATTTCTCGCTTTCT 57.144 32.000 0.00 0.00 0.00 2.52
1624 2339 8.902040 AAATCAGTTTCATATTTCTCGCTTTC 57.098 30.769 0.00 0.00 0.00 2.62
1628 2343 9.935682 TGATAAAATCAGTTTCATATTTCTCGC 57.064 29.630 0.00 0.00 33.59 5.03
1644 2359 6.927416 AGTTGCTCAAATGCTGATAAAATCA 58.073 32.000 0.00 0.00 37.76 2.57
1645 2360 7.256286 AGAGTTGCTCAAATGCTGATAAAATC 58.744 34.615 0.00 0.00 32.14 2.17
1646 2361 7.166691 AGAGTTGCTCAAATGCTGATAAAAT 57.833 32.000 0.00 0.00 32.14 1.82
1647 2362 6.579666 AGAGTTGCTCAAATGCTGATAAAA 57.420 33.333 0.00 0.00 32.14 1.52
1648 2363 6.187125 GAGAGTTGCTCAAATGCTGATAAA 57.813 37.500 0.00 0.00 43.38 1.40
1649 2364 5.808042 GAGAGTTGCTCAAATGCTGATAA 57.192 39.130 0.00 0.00 43.38 1.75
1660 2375 5.873712 GATCTGAAGATTTGAGAGTTGCTCA 59.126 40.000 0.00 0.00 42.43 4.26
1661 2376 5.873712 TGATCTGAAGATTTGAGAGTTGCTC 59.126 40.000 0.00 0.00 38.32 4.26
1662 2377 5.802465 TGATCTGAAGATTTGAGAGTTGCT 58.198 37.500 0.00 0.00 34.37 3.91
1663 2378 6.492007 TTGATCTGAAGATTTGAGAGTTGC 57.508 37.500 0.00 0.00 34.37 4.17
1664 2379 9.909644 AAAATTGATCTGAAGATTTGAGAGTTG 57.090 29.630 0.00 0.00 34.37 3.16
1666 2381 9.293404 TGAAAATTGATCTGAAGATTTGAGAGT 57.707 29.630 0.00 0.00 34.37 3.24
1685 2400 9.949174 GCAAAACAATCCACTTTTATGAAAATT 57.051 25.926 0.00 0.00 0.00 1.82
1686 2401 9.341078 AGCAAAACAATCCACTTTTATGAAAAT 57.659 25.926 0.00 0.00 0.00 1.82
1687 2402 8.729805 AGCAAAACAATCCACTTTTATGAAAA 57.270 26.923 0.00 0.00 0.00 2.29
1688 2403 8.729805 AAGCAAAACAATCCACTTTTATGAAA 57.270 26.923 0.00 0.00 0.00 2.69
1689 2404 8.610896 CAAAGCAAAACAATCCACTTTTATGAA 58.389 29.630 0.00 0.00 0.00 2.57
1690 2405 7.226325 CCAAAGCAAAACAATCCACTTTTATGA 59.774 33.333 0.00 0.00 0.00 2.15
1691 2406 7.226325 TCCAAAGCAAAACAATCCACTTTTATG 59.774 33.333 0.00 0.00 0.00 1.90
1692 2407 7.278875 TCCAAAGCAAAACAATCCACTTTTAT 58.721 30.769 0.00 0.00 0.00 1.40
1693 2408 6.644347 TCCAAAGCAAAACAATCCACTTTTA 58.356 32.000 0.00 0.00 0.00 1.52
1694 2409 5.495640 TCCAAAGCAAAACAATCCACTTTT 58.504 33.333 0.00 0.00 0.00 2.27
1695 2410 5.096443 TCCAAAGCAAAACAATCCACTTT 57.904 34.783 0.00 0.00 0.00 2.66
1696 2411 4.405358 TCTCCAAAGCAAAACAATCCACTT 59.595 37.500 0.00 0.00 0.00 3.16
1697 2412 3.960102 TCTCCAAAGCAAAACAATCCACT 59.040 39.130 0.00 0.00 0.00 4.00
1698 2413 4.051237 GTCTCCAAAGCAAAACAATCCAC 58.949 43.478 0.00 0.00 0.00 4.02
1699 2414 3.243367 CGTCTCCAAAGCAAAACAATCCA 60.243 43.478 0.00 0.00 0.00 3.41
1700 2415 3.308530 CGTCTCCAAAGCAAAACAATCC 58.691 45.455 0.00 0.00 0.00 3.01
1701 2416 2.726241 GCGTCTCCAAAGCAAAACAATC 59.274 45.455 0.00 0.00 32.01 2.67
1702 2417 2.362077 AGCGTCTCCAAAGCAAAACAAT 59.638 40.909 0.00 0.00 34.45 2.71
1703 2418 1.748493 AGCGTCTCCAAAGCAAAACAA 59.252 42.857 0.00 0.00 34.45 2.83
1704 2419 1.333619 GAGCGTCTCCAAAGCAAAACA 59.666 47.619 0.00 0.00 34.45 2.83
1705 2420 1.333619 TGAGCGTCTCCAAAGCAAAAC 59.666 47.619 4.73 0.00 34.45 2.43
1706 2421 1.674359 TGAGCGTCTCCAAAGCAAAA 58.326 45.000 4.73 0.00 34.45 2.44
1707 2422 1.603802 CTTGAGCGTCTCCAAAGCAAA 59.396 47.619 4.73 0.00 34.45 3.68
1708 2423 1.202639 TCTTGAGCGTCTCCAAAGCAA 60.203 47.619 4.73 0.00 34.45 3.91
1709 2424 0.392706 TCTTGAGCGTCTCCAAAGCA 59.607 50.000 4.73 0.00 34.45 3.91
1710 2425 0.793250 GTCTTGAGCGTCTCCAAAGC 59.207 55.000 4.73 0.00 0.00 3.51
1711 2426 1.063806 CGTCTTGAGCGTCTCCAAAG 58.936 55.000 4.73 3.52 0.00 2.77
1712 2427 0.671796 TCGTCTTGAGCGTCTCCAAA 59.328 50.000 4.73 0.00 0.00 3.28
1713 2428 0.241213 CTCGTCTTGAGCGTCTCCAA 59.759 55.000 4.73 0.00 38.03 3.53
1714 2429 1.587043 CCTCGTCTTGAGCGTCTCCA 61.587 60.000 4.73 0.00 43.82 3.86
1715 2430 1.137825 CCTCGTCTTGAGCGTCTCC 59.862 63.158 4.73 0.00 43.82 3.71
1716 2431 1.515304 GCCTCGTCTTGAGCGTCTC 60.515 63.158 0.58 0.58 43.82 3.36
1717 2432 2.569134 GCCTCGTCTTGAGCGTCT 59.431 61.111 0.00 0.00 43.82 4.18
1718 2433 2.507324 GGCCTCGTCTTGAGCGTC 60.507 66.667 0.00 0.00 43.82 5.19
1719 2434 2.867855 TTGGCCTCGTCTTGAGCGT 61.868 57.895 3.32 0.00 43.82 5.07
1720 2435 2.048222 TTGGCCTCGTCTTGAGCG 60.048 61.111 3.32 0.00 43.82 5.03
1721 2436 2.035442 GGTTGGCCTCGTCTTGAGC 61.035 63.158 3.32 0.00 43.82 4.26
1722 2437 0.895530 TAGGTTGGCCTCGTCTTGAG 59.104 55.000 3.32 0.00 45.64 3.02
1723 2438 1.568504 ATAGGTTGGCCTCGTCTTGA 58.431 50.000 3.32 0.00 45.64 3.02
1724 2439 2.403252 AATAGGTTGGCCTCGTCTTG 57.597 50.000 3.32 0.00 45.64 3.02
1725 2440 2.711542 CAAATAGGTTGGCCTCGTCTT 58.288 47.619 3.32 0.00 45.64 3.01
1726 2441 1.679032 GCAAATAGGTTGGCCTCGTCT 60.679 52.381 3.32 0.00 45.64 4.18
1727 2442 0.733150 GCAAATAGGTTGGCCTCGTC 59.267 55.000 3.32 0.00 45.64 4.20
1728 2443 0.328258 AGCAAATAGGTTGGCCTCGT 59.672 50.000 3.32 1.39 45.64 4.18
1729 2444 1.463674 AAGCAAATAGGTTGGCCTCG 58.536 50.000 3.32 0.00 45.64 4.63
1730 2445 2.094026 CCAAAGCAAATAGGTTGGCCTC 60.094 50.000 3.32 0.00 45.64 4.70
1732 2447 1.066215 CCCAAAGCAAATAGGTTGGCC 60.066 52.381 0.00 0.00 38.12 5.36
1733 2448 1.066215 CCCCAAAGCAAATAGGTTGGC 60.066 52.381 0.00 0.00 38.12 4.52
1734 2449 2.534990 TCCCCAAAGCAAATAGGTTGG 58.465 47.619 0.00 0.00 38.12 3.77
1735 2450 3.515104 ACATCCCCAAAGCAAATAGGTTG 59.485 43.478 0.00 0.00 38.12 3.77
1736 2451 3.769300 GACATCCCCAAAGCAAATAGGTT 59.231 43.478 0.00 0.00 40.25 3.50
1737 2452 3.365472 GACATCCCCAAAGCAAATAGGT 58.635 45.455 0.00 0.00 0.00 3.08
1738 2453 2.358898 CGACATCCCCAAAGCAAATAGG 59.641 50.000 0.00 0.00 0.00 2.57
1739 2454 3.016736 ACGACATCCCCAAAGCAAATAG 58.983 45.455 0.00 0.00 0.00 1.73
1740 2455 2.752354 CACGACATCCCCAAAGCAAATA 59.248 45.455 0.00 0.00 0.00 1.40
1741 2456 1.545582 CACGACATCCCCAAAGCAAAT 59.454 47.619 0.00 0.00 0.00 2.32
1742 2457 0.958091 CACGACATCCCCAAAGCAAA 59.042 50.000 0.00 0.00 0.00 3.68
1743 2458 0.109532 TCACGACATCCCCAAAGCAA 59.890 50.000 0.00 0.00 0.00 3.91
1744 2459 0.327924 ATCACGACATCCCCAAAGCA 59.672 50.000 0.00 0.00 0.00 3.91
1745 2460 1.017387 GATCACGACATCCCCAAAGC 58.983 55.000 0.00 0.00 0.00 3.51
1746 2461 1.290203 CGATCACGACATCCCCAAAG 58.710 55.000 0.00 0.00 42.66 2.77
1747 2462 0.742990 GCGATCACGACATCCCCAAA 60.743 55.000 0.00 0.00 42.66 3.28
1748 2463 1.153449 GCGATCACGACATCCCCAA 60.153 57.895 0.00 0.00 42.66 4.12
1749 2464 1.613317 AAGCGATCACGACATCCCCA 61.613 55.000 0.00 0.00 42.66 4.96
1750 2465 0.462047 AAAGCGATCACGACATCCCC 60.462 55.000 0.00 0.00 42.66 4.81
1751 2466 2.128035 CTAAAGCGATCACGACATCCC 58.872 52.381 0.00 0.00 42.66 3.85
1752 2467 2.128035 CCTAAAGCGATCACGACATCC 58.872 52.381 0.00 0.00 42.66 3.51
1753 2468 2.810650 ACCTAAAGCGATCACGACATC 58.189 47.619 0.00 0.00 42.66 3.06
1754 2469 2.930040 CAACCTAAAGCGATCACGACAT 59.070 45.455 0.00 0.00 42.66 3.06
1755 2470 2.288579 ACAACCTAAAGCGATCACGACA 60.289 45.455 0.00 0.00 42.66 4.35
1756 2471 2.334838 ACAACCTAAAGCGATCACGAC 58.665 47.619 0.00 0.00 42.66 4.34
1757 2472 2.230508 AGACAACCTAAAGCGATCACGA 59.769 45.455 0.00 0.00 42.66 4.35
1758 2473 2.607187 AGACAACCTAAAGCGATCACG 58.393 47.619 0.00 0.00 42.93 4.35
1759 2474 6.092259 ACATTTAGACAACCTAAAGCGATCAC 59.908 38.462 0.00 0.00 46.88 3.06
1760 2475 6.092122 CACATTTAGACAACCTAAAGCGATCA 59.908 38.462 0.00 0.00 46.88 2.92
1761 2476 6.092259 ACACATTTAGACAACCTAAAGCGATC 59.908 38.462 0.00 0.00 46.88 3.69
1762 2477 5.938125 ACACATTTAGACAACCTAAAGCGAT 59.062 36.000 0.00 0.00 46.88 4.58
1763 2478 5.302360 ACACATTTAGACAACCTAAAGCGA 58.698 37.500 0.00 0.00 46.88 4.93
1764 2479 5.607119 ACACATTTAGACAACCTAAAGCG 57.393 39.130 0.00 0.00 46.88 4.68
1765 2480 7.303261 GGTTACACATTTAGACAACCTAAAGC 58.697 38.462 0.00 0.00 46.88 3.51
1766 2481 7.664318 AGGGTTACACATTTAGACAACCTAAAG 59.336 37.037 0.00 0.00 46.88 1.85
1768 2483 7.081857 AGGGTTACACATTTAGACAACCTAA 57.918 36.000 0.00 0.00 36.50 2.69
1769 2484 6.691255 AGGGTTACACATTTAGACAACCTA 57.309 37.500 0.00 0.00 36.50 3.08
1770 2485 5.578157 AGGGTTACACATTTAGACAACCT 57.422 39.130 0.00 0.00 36.50 3.50
1771 2486 5.645067 GGTAGGGTTACACATTTAGACAACC 59.355 44.000 0.00 0.00 35.71 3.77
1772 2487 6.232692 TGGTAGGGTTACACATTTAGACAAC 58.767 40.000 0.00 0.00 0.00 3.32
1773 2488 6.436738 TGGTAGGGTTACACATTTAGACAA 57.563 37.500 0.00 0.00 0.00 3.18
1774 2489 6.630203 ATGGTAGGGTTACACATTTAGACA 57.370 37.500 0.00 0.00 0.00 3.41
1775 2490 9.623000 AAATATGGTAGGGTTACACATTTAGAC 57.377 33.333 0.00 0.00 0.00 2.59
1776 2491 9.621629 CAAATATGGTAGGGTTACACATTTAGA 57.378 33.333 0.00 0.00 0.00 2.10
1777 2492 8.846211 CCAAATATGGTAGGGTTACACATTTAG 58.154 37.037 0.00 0.00 42.18 1.85
1778 2493 8.754991 CCAAATATGGTAGGGTTACACATTTA 57.245 34.615 0.00 0.00 42.18 1.40
1779 2494 7.654022 CCAAATATGGTAGGGTTACACATTT 57.346 36.000 0.00 0.00 42.18 2.32
1801 2516 3.454447 CCCATAATCAGTGTGGAGTACCA 59.546 47.826 0.00 0.00 44.76 3.25
1802 2517 3.709653 TCCCATAATCAGTGTGGAGTACC 59.290 47.826 0.00 0.00 34.94 3.34
1803 2518 4.161565 TGTCCCATAATCAGTGTGGAGTAC 59.838 45.833 0.00 0.00 34.94 2.73
1804 2519 4.358214 TGTCCCATAATCAGTGTGGAGTA 58.642 43.478 0.00 0.00 34.94 2.59
1805 2520 3.181329 TGTCCCATAATCAGTGTGGAGT 58.819 45.455 0.00 0.00 34.94 3.85
1806 2521 3.912496 TGTCCCATAATCAGTGTGGAG 57.088 47.619 0.00 0.00 34.94 3.86
1807 2522 4.227073 TGAATGTCCCATAATCAGTGTGGA 59.773 41.667 0.00 0.00 34.94 4.02
1808 2523 4.336433 GTGAATGTCCCATAATCAGTGTGG 59.664 45.833 0.00 0.00 0.00 4.17
1809 2524 4.034394 CGTGAATGTCCCATAATCAGTGTG 59.966 45.833 0.00 0.00 0.00 3.82
1810 2525 4.081142 TCGTGAATGTCCCATAATCAGTGT 60.081 41.667 0.00 0.00 0.00 3.55
1811 2526 4.441792 TCGTGAATGTCCCATAATCAGTG 58.558 43.478 0.00 0.00 0.00 3.66
1812 2527 4.443457 CCTCGTGAATGTCCCATAATCAGT 60.443 45.833 0.00 0.00 0.00 3.41
1813 2528 4.060900 CCTCGTGAATGTCCCATAATCAG 58.939 47.826 0.00 0.00 0.00 2.90
1814 2529 3.709141 TCCTCGTGAATGTCCCATAATCA 59.291 43.478 0.00 0.00 0.00 2.57
1815 2530 4.336889 TCCTCGTGAATGTCCCATAATC 57.663 45.455 0.00 0.00 0.00 1.75
1816 2531 4.982241 ATCCTCGTGAATGTCCCATAAT 57.018 40.909 0.00 0.00 0.00 1.28
1817 2532 4.039973 GGTATCCTCGTGAATGTCCCATAA 59.960 45.833 0.00 0.00 0.00 1.90
1818 2533 3.576982 GGTATCCTCGTGAATGTCCCATA 59.423 47.826 0.00 0.00 0.00 2.74
1819 2534 2.368875 GGTATCCTCGTGAATGTCCCAT 59.631 50.000 0.00 0.00 0.00 4.00
1820 2535 1.760613 GGTATCCTCGTGAATGTCCCA 59.239 52.381 0.00 0.00 0.00 4.37
1821 2536 1.760613 TGGTATCCTCGTGAATGTCCC 59.239 52.381 0.00 0.00 0.00 4.46
1822 2537 3.393800 CATGGTATCCTCGTGAATGTCC 58.606 50.000 0.00 0.00 0.00 4.02
1823 2538 3.393800 CCATGGTATCCTCGTGAATGTC 58.606 50.000 2.57 0.00 0.00 3.06
1824 2539 2.104792 CCCATGGTATCCTCGTGAATGT 59.895 50.000 11.73 0.00 0.00 2.71
1825 2540 2.550855 CCCCATGGTATCCTCGTGAATG 60.551 54.545 11.73 0.00 0.00 2.67
1826 2541 1.699634 CCCCATGGTATCCTCGTGAAT 59.300 52.381 11.73 0.00 0.00 2.57
1827 2542 1.128200 CCCCATGGTATCCTCGTGAA 58.872 55.000 11.73 0.00 0.00 3.18
1828 2543 0.762842 CCCCCATGGTATCCTCGTGA 60.763 60.000 11.73 0.00 0.00 4.35
1829 2544 1.754745 CCCCCATGGTATCCTCGTG 59.245 63.158 11.73 0.00 0.00 4.35
1830 2545 2.147387 GCCCCCATGGTATCCTCGT 61.147 63.158 11.73 0.00 36.04 4.18
1831 2546 2.750350 GCCCCCATGGTATCCTCG 59.250 66.667 11.73 0.00 36.04 4.63
1832 2547 1.142688 ATGGCCCCCATGGTATCCTC 61.143 60.000 11.73 0.00 43.39 3.71
1833 2548 1.071904 ATGGCCCCCATGGTATCCT 60.072 57.895 11.73 0.00 43.39 3.24
1834 2549 3.606204 ATGGCCCCCATGGTATCC 58.394 61.111 11.73 8.63 43.39 2.59
1841 2556 1.708442 AATACCCCATGGCCCCCAT 60.708 57.895 6.09 0.00 46.37 4.00
1842 2557 2.288370 AATACCCCATGGCCCCCA 60.288 61.111 6.09 0.00 38.19 4.96
1843 2558 2.201210 CAATACCCCATGGCCCCC 59.799 66.667 6.09 0.00 33.59 5.40
1844 2559 2.201210 CCAATACCCCATGGCCCC 59.799 66.667 6.09 0.00 33.59 5.80
1845 2560 1.152546 GTCCAATACCCCATGGCCC 60.153 63.158 6.09 0.00 36.62 5.80
1846 2561 0.188342 ATGTCCAATACCCCATGGCC 59.812 55.000 6.09 0.00 36.62 5.36
1847 2562 2.086610 AATGTCCAATACCCCATGGC 57.913 50.000 6.09 0.00 36.62 4.40
1848 2563 3.638160 CTCAAATGTCCAATACCCCATGG 59.362 47.826 4.14 4.14 38.09 3.66
1849 2564 4.280819 ACTCAAATGTCCAATACCCCATG 58.719 43.478 0.00 0.00 0.00 3.66
1850 2565 4.608170 ACTCAAATGTCCAATACCCCAT 57.392 40.909 0.00 0.00 0.00 4.00
1851 2566 5.522315 TTACTCAAATGTCCAATACCCCA 57.478 39.130 0.00 0.00 0.00 4.96
1852 2567 7.264947 CAAATTACTCAAATGTCCAATACCCC 58.735 38.462 0.00 0.00 0.00 4.95
1853 2568 7.264947 CCAAATTACTCAAATGTCCAATACCC 58.735 38.462 0.00 0.00 0.00 3.69
1854 2569 7.264947 CCCAAATTACTCAAATGTCCAATACC 58.735 38.462 0.00 0.00 0.00 2.73
1855 2570 6.756542 GCCCAAATTACTCAAATGTCCAATAC 59.243 38.462 0.00 0.00 0.00 1.89
1856 2571 6.127196 GGCCCAAATTACTCAAATGTCCAATA 60.127 38.462 0.00 0.00 0.00 1.90
1857 2572 5.338300 GGCCCAAATTACTCAAATGTCCAAT 60.338 40.000 0.00 0.00 0.00 3.16
1858 2573 4.020662 GGCCCAAATTACTCAAATGTCCAA 60.021 41.667 0.00 0.00 0.00 3.53
1859 2574 3.513515 GGCCCAAATTACTCAAATGTCCA 59.486 43.478 0.00 0.00 0.00 4.02
1860 2575 3.513515 TGGCCCAAATTACTCAAATGTCC 59.486 43.478 0.00 0.00 0.00 4.02
1861 2576 4.799564 TGGCCCAAATTACTCAAATGTC 57.200 40.909 0.00 0.00 0.00 3.06
1862 2577 4.592778 AGTTGGCCCAAATTACTCAAATGT 59.407 37.500 0.00 0.00 0.00 2.71
1863 2578 5.151297 AGTTGGCCCAAATTACTCAAATG 57.849 39.130 0.00 0.00 0.00 2.32
1864 2579 5.071653 ACAAGTTGGCCCAAATTACTCAAAT 59.928 36.000 9.09 0.00 30.48 2.32
1865 2580 4.407296 ACAAGTTGGCCCAAATTACTCAAA 59.593 37.500 9.09 0.00 30.48 2.69
1866 2581 3.964031 ACAAGTTGGCCCAAATTACTCAA 59.036 39.130 9.09 0.00 30.48 3.02
1867 2582 3.571590 ACAAGTTGGCCCAAATTACTCA 58.428 40.909 9.09 0.00 30.48 3.41
1868 2583 4.521256 TGTACAAGTTGGCCCAAATTACTC 59.479 41.667 9.09 3.46 30.48 2.59
1869 2584 4.279922 GTGTACAAGTTGGCCCAAATTACT 59.720 41.667 9.09 0.29 30.48 2.24
1870 2585 4.038162 TGTGTACAAGTTGGCCCAAATTAC 59.962 41.667 9.09 5.77 30.48 1.89
1871 2586 4.215908 TGTGTACAAGTTGGCCCAAATTA 58.784 39.130 9.09 0.00 30.48 1.40
1872 2587 3.034635 TGTGTACAAGTTGGCCCAAATT 58.965 40.909 2.77 2.77 31.76 1.82
1873 2588 2.672098 TGTGTACAAGTTGGCCCAAAT 58.328 42.857 7.96 0.00 0.00 2.32
1874 2589 2.145397 TGTGTACAAGTTGGCCCAAA 57.855 45.000 7.96 0.00 0.00 3.28
1875 2590 2.373335 ATGTGTACAAGTTGGCCCAA 57.627 45.000 7.96 0.00 0.00 4.12
1876 2591 3.730215 ATATGTGTACAAGTTGGCCCA 57.270 42.857 7.96 0.00 0.00 5.36
1877 2592 6.062095 AGAATATATGTGTACAAGTTGGCCC 58.938 40.000 7.96 0.00 0.00 5.80
1878 2593 6.992715 AGAGAATATATGTGTACAAGTTGGCC 59.007 38.462 7.96 0.00 0.00 5.36
1879 2594 8.438676 AAGAGAATATATGTGTACAAGTTGGC 57.561 34.615 7.96 0.27 0.00 4.52
1895 2610 8.103935 GCCTAGCCCTAAAATGTAAGAGAATAT 58.896 37.037 0.00 0.00 0.00 1.28
1896 2611 7.450903 GCCTAGCCCTAAAATGTAAGAGAATA 58.549 38.462 0.00 0.00 0.00 1.75
1897 2612 6.299922 GCCTAGCCCTAAAATGTAAGAGAAT 58.700 40.000 0.00 0.00 0.00 2.40
1898 2613 5.397559 GGCCTAGCCCTAAAATGTAAGAGAA 60.398 44.000 0.00 0.00 44.06 2.87
1899 2614 4.102681 GGCCTAGCCCTAAAATGTAAGAGA 59.897 45.833 0.00 0.00 44.06 3.10
1900 2615 4.390264 GGCCTAGCCCTAAAATGTAAGAG 58.610 47.826 0.00 0.00 44.06 2.85
1901 2616 4.432980 GGCCTAGCCCTAAAATGTAAGA 57.567 45.455 0.00 0.00 44.06 2.10
1915 2630 2.203266 GGCATGGACTGGCCTAGC 60.203 66.667 3.32 4.50 46.74 3.42
1931 2646 3.496160 CTGAGGAGGGCCCATGGG 61.496 72.222 27.87 27.87 37.41 4.00
1932 2647 4.201122 GCTGAGGAGGGCCCATGG 62.201 72.222 27.56 4.14 37.41 3.66
1933 2648 4.201122 GGCTGAGGAGGGCCCATG 62.201 72.222 27.56 7.93 42.30 3.66
1937 2652 1.984288 ATTAACGGCTGAGGAGGGCC 61.984 60.000 0.00 0.00 44.43 5.80
1938 2653 0.107165 AATTAACGGCTGAGGAGGGC 60.107 55.000 0.00 0.00 0.00 5.19
1939 2654 1.209504 TGAATTAACGGCTGAGGAGGG 59.790 52.381 0.00 0.00 0.00 4.30
1940 2655 2.691409 TGAATTAACGGCTGAGGAGG 57.309 50.000 0.00 0.00 0.00 4.30
1941 2656 4.253685 TCTTTGAATTAACGGCTGAGGAG 58.746 43.478 0.00 0.00 0.00 3.69
1942 2657 4.020573 TCTCTTTGAATTAACGGCTGAGGA 60.021 41.667 0.00 0.00 0.00 3.71
1943 2658 4.253685 TCTCTTTGAATTAACGGCTGAGG 58.746 43.478 0.00 0.00 0.00 3.86
1944 2659 5.276584 CGATCTCTTTGAATTAACGGCTGAG 60.277 44.000 0.00 0.00 0.00 3.35
1945 2660 4.566759 CGATCTCTTTGAATTAACGGCTGA 59.433 41.667 0.00 0.00 0.00 4.26
1946 2661 4.566759 TCGATCTCTTTGAATTAACGGCTG 59.433 41.667 0.00 0.00 0.00 4.85
1947 2662 4.755411 TCGATCTCTTTGAATTAACGGCT 58.245 39.130 0.00 0.00 0.00 5.52
1948 2663 5.234329 TCATCGATCTCTTTGAATTAACGGC 59.766 40.000 0.00 0.00 0.00 5.68
1949 2664 6.828502 TCATCGATCTCTTTGAATTAACGG 57.171 37.500 0.00 0.00 0.00 4.44
1950 2665 8.159077 GCTATCATCGATCTCTTTGAATTAACG 58.841 37.037 0.00 0.00 0.00 3.18
1951 2666 8.159077 CGCTATCATCGATCTCTTTGAATTAAC 58.841 37.037 0.00 0.00 0.00 2.01
1952 2667 7.329471 CCGCTATCATCGATCTCTTTGAATTAA 59.671 37.037 0.00 0.00 0.00 1.40
1953 2668 6.808704 CCGCTATCATCGATCTCTTTGAATTA 59.191 38.462 0.00 0.00 0.00 1.40
1954 2669 5.636965 CCGCTATCATCGATCTCTTTGAATT 59.363 40.000 0.00 0.00 0.00 2.17
1955 2670 5.167121 CCGCTATCATCGATCTCTTTGAAT 58.833 41.667 0.00 0.00 0.00 2.57
1956 2671 4.550422 CCGCTATCATCGATCTCTTTGAA 58.450 43.478 0.00 0.00 0.00 2.69
1957 2672 3.057245 CCCGCTATCATCGATCTCTTTGA 60.057 47.826 0.00 0.00 0.00 2.69
1958 2673 3.249091 CCCGCTATCATCGATCTCTTTG 58.751 50.000 0.00 0.00 0.00 2.77
1959 2674 2.894126 ACCCGCTATCATCGATCTCTTT 59.106 45.455 0.00 0.00 0.00 2.52
1960 2675 2.230025 CACCCGCTATCATCGATCTCTT 59.770 50.000 0.00 0.00 0.00 2.85
1961 2676 1.815613 CACCCGCTATCATCGATCTCT 59.184 52.381 0.00 0.00 0.00 3.10
1962 2677 1.734047 GCACCCGCTATCATCGATCTC 60.734 57.143 0.00 0.00 34.30 2.75
1963 2678 0.244994 GCACCCGCTATCATCGATCT 59.755 55.000 0.00 0.00 34.30 2.75
1964 2679 2.743195 GCACCCGCTATCATCGATC 58.257 57.895 0.00 0.00 34.30 3.69
1965 2680 4.996976 GCACCCGCTATCATCGAT 57.003 55.556 0.00 0.00 34.30 3.59
1986 2701 0.600255 GATGTTCGTCCGCCCATAGG 60.600 60.000 0.00 0.00 0.00 2.57
1987 2702 0.939577 CGATGTTCGTCCGCCCATAG 60.940 60.000 0.00 0.00 34.72 2.23
1988 2703 1.066752 CGATGTTCGTCCGCCCATA 59.933 57.895 0.00 0.00 34.72 2.74
1989 2704 2.202878 CGATGTTCGTCCGCCCAT 60.203 61.111 0.00 0.00 34.72 4.00
1990 2705 4.444838 CCGATGTTCGTCCGCCCA 62.445 66.667 0.00 0.00 38.40 5.36
1992 2707 4.814294 AGCCGATGTTCGTCCGCC 62.814 66.667 0.00 0.00 38.40 6.13
1993 2708 3.554692 CAGCCGATGTTCGTCCGC 61.555 66.667 0.00 0.00 38.40 5.54
1994 2709 2.885644 CCAGCCGATGTTCGTCCG 60.886 66.667 0.00 0.00 38.40 4.79
1995 2710 3.195698 GCCAGCCGATGTTCGTCC 61.196 66.667 0.00 0.00 38.40 4.79
1996 2711 3.195698 GGCCAGCCGATGTTCGTC 61.196 66.667 0.00 0.00 38.40 4.20
1997 2712 4.778143 GGGCCAGCCGATGTTCGT 62.778 66.667 4.39 0.00 38.40 3.85
1998 2713 4.776322 TGGGCCAGCCGATGTTCG 62.776 66.667 0.00 0.00 40.07 3.95
1999 2714 2.252072 TACTGGGCCAGCCGATGTTC 62.252 60.000 33.04 0.00 34.37 3.18
2000 2715 1.847798 TTACTGGGCCAGCCGATGTT 61.848 55.000 33.04 14.45 34.37 2.71
2001 2716 2.297895 TTACTGGGCCAGCCGATGT 61.298 57.895 33.04 16.03 34.37 3.06
2002 2717 1.819632 GTTACTGGGCCAGCCGATG 60.820 63.158 33.04 10.26 34.37 3.84
2003 2718 1.995626 AGTTACTGGGCCAGCCGAT 60.996 57.895 33.04 16.38 34.37 4.18
2004 2719 2.606519 AGTTACTGGGCCAGCCGA 60.607 61.111 33.04 16.14 34.37 5.54
2005 2720 2.436646 CAGTTACTGGGCCAGCCG 60.437 66.667 33.04 11.90 34.37 5.52
2014 2729 2.162681 CCCTTGAAAGCCCAGTTACTG 58.837 52.381 5.22 5.22 0.00 2.74
2015 2730 1.547901 GCCCTTGAAAGCCCAGTTACT 60.548 52.381 0.00 0.00 0.00 2.24
2016 2731 0.888619 GCCCTTGAAAGCCCAGTTAC 59.111 55.000 0.00 0.00 0.00 2.50
2017 2732 0.777446 AGCCCTTGAAAGCCCAGTTA 59.223 50.000 0.00 0.00 0.00 2.24
2018 2733 0.829182 CAGCCCTTGAAAGCCCAGTT 60.829 55.000 0.00 0.00 0.00 3.16
2019 2734 1.228675 CAGCCCTTGAAAGCCCAGT 60.229 57.895 0.00 0.00 0.00 4.00
2020 2735 0.829182 AACAGCCCTTGAAAGCCCAG 60.829 55.000 0.00 0.00 0.00 4.45
2021 2736 0.398381 AAACAGCCCTTGAAAGCCCA 60.398 50.000 0.00 0.00 0.00 5.36
2022 2737 1.627864 TAAACAGCCCTTGAAAGCCC 58.372 50.000 0.00 0.00 0.00 5.19
2023 2738 3.961480 AATAAACAGCCCTTGAAAGCC 57.039 42.857 0.00 0.00 0.00 4.35
2024 2739 7.905604 AAATAAATAAACAGCCCTTGAAAGC 57.094 32.000 0.00 0.00 0.00 3.51
2043 2758 9.382307 ACTAGTTCCCACCCAAAATAAAAATAA 57.618 29.630 0.00 0.00 0.00 1.40
2044 2759 8.959676 ACTAGTTCCCACCCAAAATAAAAATA 57.040 30.769 0.00 0.00 0.00 1.40
2045 2760 7.865530 ACTAGTTCCCACCCAAAATAAAAAT 57.134 32.000 0.00 0.00 0.00 1.82
2046 2761 7.678207 AACTAGTTCCCACCCAAAATAAAAA 57.322 32.000 1.12 0.00 0.00 1.94
2047 2762 7.678207 AAACTAGTTCCCACCCAAAATAAAA 57.322 32.000 8.95 0.00 0.00 1.52
2048 2763 7.678207 AAAACTAGTTCCCACCCAAAATAAA 57.322 32.000 8.95 0.00 0.00 1.40
2049 2764 7.678207 AAAAACTAGTTCCCACCCAAAATAA 57.322 32.000 8.95 0.00 0.00 1.40
2091 2806 8.343168 ACATATAACACCCGATTCTTGAAAAA 57.657 30.769 0.00 0.00 0.00 1.94
2092 2807 7.931578 ACATATAACACCCGATTCTTGAAAA 57.068 32.000 0.00 0.00 0.00 2.29
2093 2808 7.931578 AACATATAACACCCGATTCTTGAAA 57.068 32.000 0.00 0.00 0.00 2.69
2094 2809 7.931578 AAACATATAACACCCGATTCTTGAA 57.068 32.000 0.00 0.00 0.00 2.69
2095 2810 7.931578 AAAACATATAACACCCGATTCTTGA 57.068 32.000 0.00 0.00 0.00 3.02
2096 2811 8.670135 TGTAAAACATATAACACCCGATTCTTG 58.330 33.333 0.00 0.00 0.00 3.02
2097 2812 8.671028 GTGTAAAACATATAACACCCGATTCTT 58.329 33.333 0.00 0.00 36.97 2.52
2098 2813 7.010738 CGTGTAAAACATATAACACCCGATTCT 59.989 37.037 0.00 0.00 39.20 2.40
2099 2814 7.121272 CGTGTAAAACATATAACACCCGATTC 58.879 38.462 0.00 0.00 39.20 2.52
2100 2815 6.594937 ACGTGTAAAACATATAACACCCGATT 59.405 34.615 0.00 0.00 39.20 3.34
2101 2816 6.108015 ACGTGTAAAACATATAACACCCGAT 58.892 36.000 0.00 0.00 39.20 4.18
2102 2817 5.477510 ACGTGTAAAACATATAACACCCGA 58.522 37.500 0.00 0.00 39.20 5.14
2103 2818 5.783100 ACGTGTAAAACATATAACACCCG 57.217 39.130 0.00 0.00 39.20 5.28
2104 2819 7.538334 GGAAAACGTGTAAAACATATAACACCC 59.462 37.037 0.00 0.00 39.20 4.61
2105 2820 7.538334 GGGAAAACGTGTAAAACATATAACACC 59.462 37.037 0.00 0.00 39.20 4.16
2106 2821 8.291740 AGGGAAAACGTGTAAAACATATAACAC 58.708 33.333 0.00 0.00 39.04 3.32
2107 2822 8.393671 AGGGAAAACGTGTAAAACATATAACA 57.606 30.769 0.00 0.00 0.00 2.41
2108 2823 9.681692 AAAGGGAAAACGTGTAAAACATATAAC 57.318 29.630 0.00 0.00 0.00 1.89
2111 2826 9.070179 AGTAAAGGGAAAACGTGTAAAACATAT 57.930 29.630 0.00 0.00 0.00 1.78
2112 2827 8.449251 AGTAAAGGGAAAACGTGTAAAACATA 57.551 30.769 0.00 0.00 0.00 2.29
2113 2828 7.337480 AGTAAAGGGAAAACGTGTAAAACAT 57.663 32.000 0.00 0.00 0.00 2.71
2114 2829 6.756299 AGTAAAGGGAAAACGTGTAAAACA 57.244 33.333 0.00 0.00 0.00 2.83
2119 2834 9.723601 ACAATATAAGTAAAGGGAAAACGTGTA 57.276 29.630 0.00 0.00 0.00 2.90
2120 2835 8.625786 ACAATATAAGTAAAGGGAAAACGTGT 57.374 30.769 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.