Multiple sequence alignment - TraesCS1B01G026000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G026000 chr1B 100.000 2611 0 0 1 2611 12755704 12753094 0.000000e+00 4822.0
1 TraesCS1B01G026000 chr1B 82.296 1768 213 62 732 2442 12739007 12737283 0.000000e+00 1439.0
2 TraesCS1B01G026000 chr1B 84.236 1237 133 33 937 2135 12388286 12387074 0.000000e+00 1147.0
3 TraesCS1B01G026000 chr1B 81.919 1261 142 43 878 2075 12976292 12975055 0.000000e+00 987.0
4 TraesCS1B01G026000 chr1B 80.721 1276 157 51 870 2075 13448685 13447429 0.000000e+00 911.0
5 TraesCS1B01G026000 chr1B 87.050 417 47 6 2153 2566 13082426 13082838 5.090000e-127 464.0
6 TraesCS1B01G026000 chr1B 83.846 130 11 3 2356 2485 13046890 13047009 5.900000e-22 115.0
7 TraesCS1B01G026000 chr1B 87.129 101 12 1 454 553 12410456 12410356 2.120000e-21 113.0
8 TraesCS1B01G026000 chr1B 88.172 93 10 1 461 552 12983851 12983759 2.750000e-20 110.0
9 TraesCS1B01G026000 chr1B 92.958 71 3 2 1 70 32368167 32368098 4.600000e-18 102.0
10 TraesCS1B01G026000 chr1B 84.259 108 11 4 346 453 423643393 423643292 1.650000e-17 100.0
11 TraesCS1B01G026000 chr1B 81.915 94 13 3 464 553 12397404 12397497 2.790000e-10 76.8
12 TraesCS1B01G026000 chr1D 91.304 1449 102 14 1161 2599 9367554 9366120 0.000000e+00 1956.0
13 TraesCS1B01G026000 chr1D 88.440 1263 105 21 1098 2349 9395592 9394360 0.000000e+00 1485.0
14 TraesCS1B01G026000 chr1D 82.832 1363 133 52 732 2031 9364928 9363604 0.000000e+00 1127.0
15 TraesCS1B01G026000 chr1D 84.702 889 105 18 973 1842 9400409 9399533 0.000000e+00 859.0
16 TraesCS1B01G026000 chr1D 73.255 931 153 60 1099 1957 9664759 9663853 4.310000e-63 252.0
17 TraesCS1B01G026000 chr1D 87.234 141 8 3 807 939 9397964 9397826 4.500000e-33 152.0
18 TraesCS1B01G026000 chr1D 92.857 98 7 0 1239 1336 9366517 9366420 2.710000e-30 143.0
19 TraesCS1B01G026000 chr1D 92.857 98 7 0 1239 1336 9394507 9394410 2.710000e-30 143.0
20 TraesCS1B01G026000 chr1D 89.691 97 10 0 2203 2299 9395455 9395359 9.810000e-25 124.0
21 TraesCS1B01G026000 chr1D 80.833 120 11 3 505 612 9365103 9364984 1.670000e-12 84.2
22 TraesCS1B01G026000 chr1A 83.760 1798 209 49 825 2569 10607728 10605961 0.000000e+00 1626.0
23 TraesCS1B01G026000 chr1A 84.169 379 53 6 1098 1476 10602746 10602375 6.870000e-96 361.0
24 TraesCS1B01G026000 chr1A 91.667 96 8 0 1240 1335 10606319 10606224 1.630000e-27 134.0
25 TraesCS1B01G026000 chr1A 92.982 57 1 3 1138 1194 10214813 10214760 2.150000e-11 80.5
26 TraesCS1B01G026000 chr1A 92.308 52 1 3 1140 1191 10132662 10132710 1.300000e-08 71.3
27 TraesCS1B01G026000 chr7D 95.522 67 2 1 1 66 613502336 613502270 3.550000e-19 106.0
28 TraesCS1B01G026000 chr7D 95.385 65 2 1 1 64 229802534 229802470 4.600000e-18 102.0
29 TraesCS1B01G026000 chr3A 94.203 69 3 1 1 68 57515356 57515288 1.280000e-18 104.0
30 TraesCS1B01G026000 chr5D 95.385 65 2 1 1 64 448923422 448923358 4.600000e-18 102.0
31 TraesCS1B01G026000 chr5D 100.000 28 0 0 695 722 338412878 338412851 5.000000e-03 52.8
32 TraesCS1B01G026000 chr3D 95.385 65 2 1 1 64 572121618 572121682 4.600000e-18 102.0
33 TraesCS1B01G026000 chr2D 95.385 65 2 1 1 64 73966673 73966609 4.600000e-18 102.0
34 TraesCS1B01G026000 chr2D 95.385 65 2 1 1 64 651313700 651313636 4.600000e-18 102.0
35 TraesCS1B01G026000 chr3B 89.873 79 4 3 1 78 726359730 726359655 5.950000e-17 99.0
36 TraesCS1B01G026000 chr7B 82.609 115 10 5 345 459 536657910 536658014 2.770000e-15 93.5
37 TraesCS1B01G026000 chr4B 86.585 82 10 1 642 722 14108433 14108514 3.580000e-14 89.8
38 TraesCS1B01G026000 chr6D 92.308 52 4 0 673 724 18533952 18533901 1.000000e-09 75.0
39 TraesCS1B01G026000 chr2A 100.000 31 0 0 437 467 723617909 723617879 1.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G026000 chr1B 12753094 12755704 2610 True 4822.00 4822 100.0000 1 2611 1 chr1B.!!$R4 2610
1 TraesCS1B01G026000 chr1B 12737283 12739007 1724 True 1439.00 1439 82.2960 732 2442 1 chr1B.!!$R3 1710
2 TraesCS1B01G026000 chr1B 12387074 12388286 1212 True 1147.00 1147 84.2360 937 2135 1 chr1B.!!$R1 1198
3 TraesCS1B01G026000 chr1B 12975055 12976292 1237 True 987.00 987 81.9190 878 2075 1 chr1B.!!$R5 1197
4 TraesCS1B01G026000 chr1B 13447429 13448685 1256 True 911.00 911 80.7210 870 2075 1 chr1B.!!$R7 1205
5 TraesCS1B01G026000 chr1D 9363604 9367554 3950 True 827.55 1956 86.9565 505 2599 4 chr1D.!!$R2 2094
6 TraesCS1B01G026000 chr1D 9394360 9400409 6049 True 552.60 1485 88.5848 807 2349 5 chr1D.!!$R3 1542
7 TraesCS1B01G026000 chr1D 9663853 9664759 906 True 252.00 252 73.2550 1099 1957 1 chr1D.!!$R1 858
8 TraesCS1B01G026000 chr1A 10602375 10607728 5353 True 707.00 1626 86.5320 825 2569 3 chr1A.!!$R2 1744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 2883 0.106868 TGCTGCAGATCCAATCCAGG 60.107 55.0 20.43 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 8860 0.096454 GGGATTTCACTTGCGCGTAC 59.904 55.0 8.43 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.543736 GCTAATAGCATATTTTAAGGTCGCC 58.456 40.000 7.49 0.00 41.89 5.54
31 32 5.607119 AATAGCATATTTTAAGGTCGCCG 57.393 39.130 0.00 0.00 0.00 6.46
32 33 1.602377 AGCATATTTTAAGGTCGCCGC 59.398 47.619 0.00 0.00 0.00 6.53
33 34 1.602377 GCATATTTTAAGGTCGCCGCT 59.398 47.619 0.00 0.00 0.00 5.52
34 35 2.803956 GCATATTTTAAGGTCGCCGCTA 59.196 45.455 0.00 0.00 0.00 4.26
36 37 4.083484 GCATATTTTAAGGTCGCCGCTATT 60.083 41.667 0.00 0.00 0.00 1.73
39 40 3.750639 TTTAAGGTCGCCGCTATTTTG 57.249 42.857 0.00 0.00 0.00 2.44
40 41 1.011333 TAAGGTCGCCGCTATTTTGC 58.989 50.000 0.00 0.00 0.00 3.68
41 42 0.676782 AAGGTCGCCGCTATTTTGCT 60.677 50.000 0.00 0.00 0.00 3.91
42 43 1.062525 GGTCGCCGCTATTTTGCTG 59.937 57.895 0.00 0.00 0.00 4.41
44 45 1.003851 GTCGCCGCTATTTTGCTGTA 58.996 50.000 0.00 0.00 0.00 2.74
45 46 1.004927 GTCGCCGCTATTTTGCTGTAG 60.005 52.381 0.00 0.00 0.00 2.74
46 47 0.316196 CGCCGCTATTTTGCTGTAGC 60.316 55.000 0.00 0.00 39.86 3.58
49 50 3.133814 GCTATTTTGCTGTAGCGCG 57.866 52.632 0.00 0.00 45.83 6.86
50 51 0.373716 GCTATTTTGCTGTAGCGCGT 59.626 50.000 8.43 0.00 45.83 6.01
53 54 3.303132 GCTATTTTGCTGTAGCGCGTTAT 60.303 43.478 8.43 0.00 45.83 1.89
54 55 3.757745 ATTTTGCTGTAGCGCGTTATT 57.242 38.095 8.43 0.00 45.83 1.40
56 57 3.546002 TTTGCTGTAGCGCGTTATTTT 57.454 38.095 8.43 0.00 45.83 1.82
57 58 3.546002 TTGCTGTAGCGCGTTATTTTT 57.454 38.095 8.43 0.00 45.83 1.94
78 79 6.954616 TTTTCATTGATCATTGTGATGCAC 57.045 33.333 15.32 0.00 37.20 4.57
80 81 5.845391 TCATTGATCATTGTGATGCACAT 57.155 34.783 15.32 0.00 44.16 3.21
81 82 6.945938 TCATTGATCATTGTGATGCACATA 57.054 33.333 15.32 0.00 44.16 2.29
82 83 6.966021 TCATTGATCATTGTGATGCACATAG 58.034 36.000 15.32 0.00 44.16 2.23
83 84 4.823790 TGATCATTGTGATGCACATAGC 57.176 40.909 0.62 0.00 44.16 2.97
84 85 4.457466 TGATCATTGTGATGCACATAGCT 58.543 39.130 0.62 0.00 44.16 3.32
85 86 5.613329 TGATCATTGTGATGCACATAGCTA 58.387 37.500 0.00 0.00 44.16 3.32
87 88 7.388437 TGATCATTGTGATGCACATAGCTATA 58.612 34.615 5.77 0.00 44.16 1.31
89 90 5.640783 TCATTGTGATGCACATAGCTATAGC 59.359 40.000 17.33 17.33 44.16 2.97
90 91 4.605640 TGTGATGCACATAGCTATAGCA 57.394 40.909 25.99 25.99 45.94 3.49
91 92 4.959723 TGTGATGCACATAGCTATAGCAA 58.040 39.130 26.96 15.09 45.94 3.91
92 93 5.554070 TGTGATGCACATAGCTATAGCAAT 58.446 37.500 26.96 18.66 45.94 3.56
93 94 5.999600 TGTGATGCACATAGCTATAGCAATT 59.000 36.000 26.96 16.95 45.94 2.32
94 95 6.487668 TGTGATGCACATAGCTATAGCAATTT 59.512 34.615 26.96 16.41 45.94 1.82
96 97 8.506437 GTGATGCACATAGCTATAGCAATTTTA 58.494 33.333 26.96 10.04 45.94 1.52
97 98 9.234827 TGATGCACATAGCTATAGCAATTTTAT 57.765 29.630 26.96 15.33 45.94 1.40
122 123 8.635877 TTTTAAGACAAAAACATATTGCACGT 57.364 26.923 0.00 0.00 0.00 4.49
123 124 7.616103 TTAAGACAAAAACATATTGCACGTG 57.384 32.000 12.28 12.28 0.00 4.49
124 125 3.980775 AGACAAAAACATATTGCACGTGC 59.019 39.130 33.11 33.11 42.50 5.34
127 128 1.160989 AAACATATTGCACGTGCCGA 58.839 45.000 35.72 24.92 41.18 5.54
128 129 1.378531 AACATATTGCACGTGCCGAT 58.621 45.000 35.72 29.04 41.18 4.18
129 130 1.378531 ACATATTGCACGTGCCGATT 58.621 45.000 35.72 20.06 41.18 3.34
131 132 2.939756 ACATATTGCACGTGCCGATTTA 59.060 40.909 35.72 19.78 41.18 1.40
132 133 3.242608 ACATATTGCACGTGCCGATTTAC 60.243 43.478 35.72 8.34 41.18 2.01
133 134 1.160989 ATTGCACGTGCCGATTTACA 58.839 45.000 35.72 13.53 41.18 2.41
134 135 1.160989 TTGCACGTGCCGATTTACAT 58.839 45.000 35.72 0.00 41.18 2.29
136 137 2.556257 TGCACGTGCCGATTTACATAT 58.444 42.857 35.72 0.00 41.18 1.78
137 138 2.542178 TGCACGTGCCGATTTACATATC 59.458 45.455 35.72 5.59 41.18 1.63
138 139 2.409752 GCACGTGCCGATTTACATATCG 60.410 50.000 30.12 0.00 45.27 2.92
153 154 4.141965 TCGATGGCCGACGTGCAT 62.142 61.111 18.18 0.00 43.23 3.96
155 156 1.880796 CGATGGCCGACGTGCATAA 60.881 57.895 12.23 0.00 41.76 1.90
156 157 1.821241 CGATGGCCGACGTGCATAAG 61.821 60.000 12.23 0.00 41.76 1.73
158 159 1.966901 ATGGCCGACGTGCATAAGGA 61.967 55.000 0.00 0.00 0.00 3.36
159 160 1.227556 GGCCGACGTGCATAAGGAT 60.228 57.895 0.00 0.00 0.00 3.24
161 162 0.810031 GCCGACGTGCATAAGGATGT 60.810 55.000 0.00 0.00 38.10 3.06
163 164 2.816689 CCGACGTGCATAAGGATGTTA 58.183 47.619 0.00 0.00 35.27 2.41
164 165 3.191669 CCGACGTGCATAAGGATGTTAA 58.808 45.455 0.00 0.00 35.27 2.01
165 166 3.807622 CCGACGTGCATAAGGATGTTAAT 59.192 43.478 0.00 0.00 35.27 1.40
167 168 5.220777 CCGACGTGCATAAGGATGTTAATTT 60.221 40.000 0.00 0.00 35.27 1.82
168 169 6.255215 CGACGTGCATAAGGATGTTAATTTT 58.745 36.000 0.00 0.00 35.27 1.82
169 170 6.745450 CGACGTGCATAAGGATGTTAATTTTT 59.255 34.615 0.00 0.00 35.27 1.94
170 171 7.253288 CGACGTGCATAAGGATGTTAATTTTTG 60.253 37.037 0.00 0.00 35.27 2.44
171 172 7.375053 ACGTGCATAAGGATGTTAATTTTTGT 58.625 30.769 0.00 0.00 35.30 2.83
172 173 7.870445 ACGTGCATAAGGATGTTAATTTTTGTT 59.130 29.630 0.00 0.00 35.30 2.83
173 174 8.161610 CGTGCATAAGGATGTTAATTTTTGTTG 58.838 33.333 0.00 0.00 35.30 3.33
174 175 9.202273 GTGCATAAGGATGTTAATTTTTGTTGA 57.798 29.630 0.00 0.00 35.30 3.18
175 176 9.770097 TGCATAAGGATGTTAATTTTTGTTGAA 57.230 25.926 0.00 0.00 35.30 2.69
195 196 7.974501 TGTTGAAAAATTAAACACCACATACGT 59.025 29.630 0.00 0.00 0.00 3.57
196 197 9.448294 GTTGAAAAATTAAACACCACATACGTA 57.552 29.630 0.00 0.00 0.00 3.57
198 199 8.618677 TGAAAAATTAAACACCACATACGTACA 58.381 29.630 0.00 0.00 0.00 2.90
199 200 9.448294 GAAAAATTAAACACCACATACGTACAA 57.552 29.630 0.00 0.00 0.00 2.41
200 201 9.968870 AAAAATTAAACACCACATACGTACAAT 57.031 25.926 0.00 0.00 0.00 2.71
201 202 8.958175 AAATTAAACACCACATACGTACAATG 57.042 30.769 0.00 0.00 0.00 2.82
203 204 5.600908 AAACACCACATACGTACAATGAC 57.399 39.130 11.17 0.00 0.00 3.06
205 206 4.827692 ACACCACATACGTACAATGACAT 58.172 39.130 11.17 0.00 0.00 3.06
206 207 4.629634 ACACCACATACGTACAATGACATG 59.370 41.667 11.17 0.00 0.00 3.21
207 208 4.867608 CACCACATACGTACAATGACATGA 59.132 41.667 11.17 0.00 0.00 3.07
209 210 5.105513 ACCACATACGTACAATGACATGAGA 60.106 40.000 11.17 0.00 0.00 3.27
210 211 5.810074 CCACATACGTACAATGACATGAGAA 59.190 40.000 11.17 0.00 0.00 2.87
211 212 6.019559 CCACATACGTACAATGACATGAGAAG 60.020 42.308 11.17 0.00 0.00 2.85
212 213 6.531594 CACATACGTACAATGACATGAGAAGT 59.468 38.462 11.17 0.00 0.00 3.01
213 214 6.752351 ACATACGTACAATGACATGAGAAGTC 59.248 38.462 11.17 0.00 36.55 3.01
231 232 3.017265 GTCAAATGGACAAGGCACAAG 57.983 47.619 0.00 0.00 46.19 3.16
232 233 2.362077 GTCAAATGGACAAGGCACAAGT 59.638 45.455 0.00 0.00 46.19 3.16
233 234 2.361757 TCAAATGGACAAGGCACAAGTG 59.638 45.455 0.00 0.00 0.00 3.16
234 235 2.071778 AATGGACAAGGCACAAGTGT 57.928 45.000 1.79 0.00 0.00 3.55
235 236 2.071778 ATGGACAAGGCACAAGTGTT 57.928 45.000 1.79 0.00 0.00 3.32
237 238 1.064758 TGGACAAGGCACAAGTGTTCT 60.065 47.619 1.79 0.00 0.00 3.01
238 239 1.604278 GGACAAGGCACAAGTGTTCTC 59.396 52.381 1.79 0.00 0.00 2.87
239 240 2.565841 GACAAGGCACAAGTGTTCTCT 58.434 47.619 1.79 0.00 0.00 3.10
242 243 3.129287 ACAAGGCACAAGTGTTCTCTTTG 59.871 43.478 1.79 1.38 0.00 2.77
245 246 2.454055 GCACAAGTGTTCTCTTTGCAC 58.546 47.619 1.79 0.00 34.70 4.57
246 247 2.159393 GCACAAGTGTTCTCTTTGCACA 60.159 45.455 1.79 0.00 34.70 4.57
247 248 3.673052 GCACAAGTGTTCTCTTTGCACAA 60.673 43.478 1.79 0.00 34.70 3.33
248 249 4.100529 CACAAGTGTTCTCTTTGCACAAG 58.899 43.478 0.00 0.00 35.75 3.16
251 252 5.126061 ACAAGTGTTCTCTTTGCACAAGAAT 59.874 36.000 10.97 0.00 35.75 2.40
252 253 5.841957 AGTGTTCTCTTTGCACAAGAATT 57.158 34.783 10.97 0.00 35.75 2.17
268 269 4.799564 AGAATTGAGAGATAGATCGGCC 57.200 45.455 0.00 0.00 0.00 6.13
270 271 2.381752 TTGAGAGATAGATCGGCCCA 57.618 50.000 0.00 0.00 0.00 5.36
271 272 2.381752 TGAGAGATAGATCGGCCCAA 57.618 50.000 0.00 0.00 0.00 4.12
272 273 2.242926 TGAGAGATAGATCGGCCCAAG 58.757 52.381 0.00 0.00 0.00 3.61
273 274 2.243810 GAGAGATAGATCGGCCCAAGT 58.756 52.381 0.00 0.00 0.00 3.16
274 275 2.230266 GAGAGATAGATCGGCCCAAGTC 59.770 54.545 0.00 0.00 0.00 3.01
275 276 1.964223 GAGATAGATCGGCCCAAGTCA 59.036 52.381 0.00 0.00 0.00 3.41
276 277 2.564947 GAGATAGATCGGCCCAAGTCAT 59.435 50.000 0.00 0.00 0.00 3.06
277 278 2.301296 AGATAGATCGGCCCAAGTCATG 59.699 50.000 0.00 0.00 0.00 3.07
278 279 1.788229 TAGATCGGCCCAAGTCATGA 58.212 50.000 0.00 0.00 0.00 3.07
279 280 0.467384 AGATCGGCCCAAGTCATGAG 59.533 55.000 0.00 0.00 0.00 2.90
280 281 1.153086 ATCGGCCCAAGTCATGAGC 60.153 57.895 0.00 0.00 30.72 4.26
281 282 1.630126 ATCGGCCCAAGTCATGAGCT 61.630 55.000 0.00 0.00 32.48 4.09
283 284 1.372087 CGGCCCAAGTCATGAGCTTC 61.372 60.000 0.00 0.00 32.48 3.86
284 285 0.322816 GGCCCAAGTCATGAGCTTCA 60.323 55.000 0.00 0.00 32.48 3.02
285 286 1.093159 GCCCAAGTCATGAGCTTCAG 58.907 55.000 0.00 0.00 28.57 3.02
286 287 1.612726 GCCCAAGTCATGAGCTTCAGT 60.613 52.381 0.00 0.00 28.57 3.41
287 288 2.354259 CCCAAGTCATGAGCTTCAGTC 58.646 52.381 0.00 0.00 0.00 3.51
289 290 3.607741 CCAAGTCATGAGCTTCAGTCAT 58.392 45.455 0.00 0.00 34.88 3.06
290 291 4.008330 CCAAGTCATGAGCTTCAGTCATT 58.992 43.478 0.00 0.00 32.06 2.57
292 293 4.283363 AGTCATGAGCTTCAGTCATTGT 57.717 40.909 0.00 0.00 32.06 2.71
294 295 4.694509 AGTCATGAGCTTCAGTCATTGTTC 59.305 41.667 0.00 0.00 32.06 3.18
295 296 4.694509 GTCATGAGCTTCAGTCATTGTTCT 59.305 41.667 0.00 0.00 32.06 3.01
296 297 4.934001 TCATGAGCTTCAGTCATTGTTCTC 59.066 41.667 0.00 0.00 32.06 2.87
298 299 4.965814 TGAGCTTCAGTCATTGTTCTCTT 58.034 39.130 0.00 0.00 0.00 2.85
299 300 4.993584 TGAGCTTCAGTCATTGTTCTCTTC 59.006 41.667 0.00 0.00 0.00 2.87
302 303 5.700373 AGCTTCAGTCATTGTTCTCTTCTTC 59.300 40.000 0.00 0.00 0.00 2.87
303 304 5.106752 GCTTCAGTCATTGTTCTCTTCTTCC 60.107 44.000 0.00 0.00 0.00 3.46
306 307 5.070981 TCAGTCATTGTTCTCTTCTTCCACT 59.929 40.000 0.00 0.00 0.00 4.00
307 308 6.267699 TCAGTCATTGTTCTCTTCTTCCACTA 59.732 38.462 0.00 0.00 0.00 2.74
309 310 6.495181 AGTCATTGTTCTCTTCTTCCACTAGA 59.505 38.462 0.00 0.00 0.00 2.43
312 313 5.078411 TGTTCTCTTCTTCCACTAGATGC 57.922 43.478 0.00 0.00 0.00 3.91
313 314 4.528206 TGTTCTCTTCTTCCACTAGATGCA 59.472 41.667 0.00 0.00 0.00 3.96
314 315 4.727507 TCTCTTCTTCCACTAGATGCAC 57.272 45.455 0.00 0.00 0.00 4.57
315 316 4.089361 TCTCTTCTTCCACTAGATGCACA 58.911 43.478 0.00 0.00 0.00 4.57
316 317 4.713814 TCTCTTCTTCCACTAGATGCACAT 59.286 41.667 0.00 0.00 0.00 3.21
317 318 5.188555 TCTCTTCTTCCACTAGATGCACATT 59.811 40.000 0.00 0.00 0.00 2.71
318 319 5.809001 TCTTCTTCCACTAGATGCACATTT 58.191 37.500 0.00 0.00 0.00 2.32
320 321 6.818644 TCTTCTTCCACTAGATGCACATTTAC 59.181 38.462 0.00 0.00 0.00 2.01
323 324 7.492524 TCTTCCACTAGATGCACATTTACTAG 58.507 38.462 0.00 0.00 37.25 2.57
324 325 6.791867 TCCACTAGATGCACATTTACTAGT 57.208 37.500 0.00 0.00 42.58 2.57
333 334 3.479006 CACATTTACTAGTGCACGCAAC 58.521 45.455 12.01 0.00 0.00 4.17
334 335 3.059257 CACATTTACTAGTGCACGCAACA 60.059 43.478 12.01 0.00 0.00 3.33
335 336 3.562141 ACATTTACTAGTGCACGCAACAA 59.438 39.130 12.01 3.75 0.00 2.83
336 337 3.870723 TTTACTAGTGCACGCAACAAG 57.129 42.857 12.01 6.07 0.00 3.16
337 338 2.804697 TACTAGTGCACGCAACAAGA 57.195 45.000 12.01 0.00 0.00 3.02
338 339 1.502231 ACTAGTGCACGCAACAAGAG 58.498 50.000 12.01 2.78 0.00 2.85
339 340 1.068588 ACTAGTGCACGCAACAAGAGA 59.931 47.619 12.01 0.00 0.00 3.10
342 343 1.265095 AGTGCACGCAACAAGAGATTG 59.735 47.619 12.01 0.00 0.00 2.67
354 355 4.583871 ACAAGAGATTGCTACTCCCTTTG 58.416 43.478 0.00 0.00 35.27 2.77
356 357 4.479786 AGAGATTGCTACTCCCTTTGTC 57.520 45.455 0.00 0.00 35.27 3.18
357 358 3.198853 AGAGATTGCTACTCCCTTTGTCC 59.801 47.826 0.00 0.00 35.27 4.02
358 359 2.239907 AGATTGCTACTCCCTTTGTCCC 59.760 50.000 0.00 0.00 0.00 4.46
359 360 0.323629 TTGCTACTCCCTTTGTCCCG 59.676 55.000 0.00 0.00 0.00 5.14
360 361 0.543410 TGCTACTCCCTTTGTCCCGA 60.543 55.000 0.00 0.00 0.00 5.14
361 362 0.611714 GCTACTCCCTTTGTCCCGAA 59.388 55.000 0.00 0.00 0.00 4.30
362 363 1.209747 GCTACTCCCTTTGTCCCGAAT 59.790 52.381 0.00 0.00 0.00 3.34
364 365 3.118519 GCTACTCCCTTTGTCCCGAATTA 60.119 47.826 0.00 0.00 0.00 1.40
365 366 3.345508 ACTCCCTTTGTCCCGAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
366 367 2.910977 ACTCCCTTTGTCCCGAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
367 368 3.329814 ACTCCCTTTGTCCCGAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
369 370 3.073356 TCCCTTTGTCCCGAATTACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
370 371 3.439129 CCCTTTGTCCCGAATTACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
371 372 3.124636 CCTTTGTCCCGAATTACTTGTCG 59.875 47.826 0.00 0.00 37.01 4.35
373 374 4.517952 TTGTCCCGAATTACTTGTCGTA 57.482 40.909 0.00 0.00 35.48 3.43
375 376 3.255395 TGTCCCGAATTACTTGTCGTACA 59.745 43.478 0.00 0.00 35.48 2.90
376 377 4.236935 GTCCCGAATTACTTGTCGTACAA 58.763 43.478 0.00 0.00 36.54 2.41
377 378 4.866486 GTCCCGAATTACTTGTCGTACAAT 59.134 41.667 0.00 0.00 37.48 2.71
380 381 5.121142 CCCGAATTACTTGTCGTACAATTGT 59.879 40.000 16.68 16.68 37.48 2.71
383 384 9.022915 CCGAATTACTTGTCGTACAATTGTATA 57.977 33.333 20.72 10.07 37.48 1.47
390 391 8.879759 ACTTGTCGTACAATTGTATAGAATTGG 58.120 33.333 28.88 16.99 44.38 3.16
391 392 9.093970 CTTGTCGTACAATTGTATAGAATTGGA 57.906 33.333 28.88 22.63 44.38 3.53
392 393 9.607988 TTGTCGTACAATTGTATAGAATTGGAT 57.392 29.630 28.88 17.14 44.38 3.41
393 394 9.040939 TGTCGTACAATTGTATAGAATTGGATG 57.959 33.333 28.88 26.61 44.38 3.51
394 395 9.042008 GTCGTACAATTGTATAGAATTGGATGT 57.958 33.333 28.88 17.04 44.38 3.06
446 447 8.947055 ATATCCATTTTTGCCACAAGTAATTC 57.053 30.769 0.00 0.00 0.00 2.17
447 448 5.226396 TCCATTTTTGCCACAAGTAATTCG 58.774 37.500 0.00 0.00 0.00 3.34
448 449 4.388469 CCATTTTTGCCACAAGTAATTCGG 59.612 41.667 0.00 0.00 0.00 4.30
451 452 1.816074 TGCCACAAGTAATTCGGGAC 58.184 50.000 0.00 0.00 0.00 4.46
453 454 2.156098 GCCACAAGTAATTCGGGACAA 58.844 47.619 0.00 0.00 0.00 3.18
455 456 3.365969 GCCACAAGTAATTCGGGACAAAG 60.366 47.826 0.00 0.00 0.00 2.77
456 457 3.190535 CCACAAGTAATTCGGGACAAAGG 59.809 47.826 0.00 0.00 0.00 3.11
460 461 2.910977 AGTAATTCGGGACAAAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
462 463 3.345508 AATTCGGGACAAAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
463 464 2.019807 TTCGGGACAAAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
464 465 2.905415 TCGGGACAAAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
465 466 2.731572 TCGGGACAAAGGGAGTACTAG 58.268 52.381 0.00 0.00 0.00 2.57
466 467 2.309755 TCGGGACAAAGGGAGTACTAGA 59.690 50.000 0.00 0.00 0.00 2.43
467 468 2.688958 CGGGACAAAGGGAGTACTAGAG 59.311 54.545 0.00 0.00 0.00 2.43
468 469 3.624205 CGGGACAAAGGGAGTACTAGAGA 60.624 52.174 0.00 0.00 0.00 3.10
472 473 4.353777 ACAAAGGGAGTACTAGAGATGCA 58.646 43.478 0.00 0.00 0.00 3.96
473 474 4.777896 ACAAAGGGAGTACTAGAGATGCAA 59.222 41.667 0.00 0.00 0.00 4.08
474 475 5.112686 CAAAGGGAGTACTAGAGATGCAAC 58.887 45.833 0.00 0.00 0.00 4.17
477 478 4.965532 AGGGAGTACTAGAGATGCAACAAT 59.034 41.667 0.00 0.00 0.00 2.71
479 480 6.069963 AGGGAGTACTAGAGATGCAACAATTT 60.070 38.462 0.00 0.00 0.00 1.82
480 481 6.037610 GGGAGTACTAGAGATGCAACAATTTG 59.962 42.308 0.00 0.00 35.62 2.32
482 483 7.119846 GGAGTACTAGAGATGCAACAATTTGTT 59.880 37.037 8.97 8.97 42.08 2.83
483 484 9.151471 GAGTACTAGAGATGCAACAATTTGTTA 57.849 33.333 14.13 1.03 38.77 2.41
484 485 9.155975 AGTACTAGAGATGCAACAATTTGTTAG 57.844 33.333 14.13 8.31 38.77 2.34
485 486 9.151471 GTACTAGAGATGCAACAATTTGTTAGA 57.849 33.333 14.13 4.90 38.77 2.10
486 487 8.034058 ACTAGAGATGCAACAATTTGTTAGAC 57.966 34.615 14.13 8.00 38.77 2.59
487 488 5.931532 AGAGATGCAACAATTTGTTAGACG 58.068 37.500 14.13 4.03 38.77 4.18
488 489 5.046910 AGATGCAACAATTTGTTAGACGG 57.953 39.130 14.13 3.69 38.77 4.79
490 491 4.481930 TGCAACAATTTGTTAGACGGAG 57.518 40.909 14.13 2.36 38.77 4.63
492 493 4.759693 TGCAACAATTTGTTAGACGGAGAT 59.240 37.500 14.13 0.00 38.77 2.75
493 494 5.935206 TGCAACAATTTGTTAGACGGAGATA 59.065 36.000 14.13 0.00 38.77 1.98
494 495 6.597672 TGCAACAATTTGTTAGACGGAGATAT 59.402 34.615 14.13 0.00 38.77 1.63
495 496 7.766738 TGCAACAATTTGTTAGACGGAGATATA 59.233 33.333 14.13 0.00 38.77 0.86
504 505 8.534333 TGTTAGACGGAGATATATTTGAATGC 57.466 34.615 0.00 0.00 0.00 3.56
505 506 8.147704 TGTTAGACGGAGATATATTTGAATGCA 58.852 33.333 0.00 0.00 0.00 3.96
506 507 8.988934 GTTAGACGGAGATATATTTGAATGCAA 58.011 33.333 0.00 0.00 0.00 4.08
508 509 7.220030 AGACGGAGATATATTTGAATGCAAGT 58.780 34.615 0.00 0.00 35.04 3.16
522 2470 0.739813 GCAAGTGAACCGACGGCTAT 60.740 55.000 15.39 0.00 0.00 2.97
528 2476 3.194116 AGTGAACCGACGGCTATTTCTAA 59.806 43.478 15.39 0.00 0.00 2.10
531 2479 1.137675 ACCGACGGCTATTTCTAACCC 59.862 52.381 15.39 0.00 0.00 4.11
533 2481 2.159000 CCGACGGCTATTTCTAACCCTT 60.159 50.000 0.00 0.00 0.00 3.95
536 2484 4.505556 CGACGGCTATTTCTAACCCTTTAC 59.494 45.833 0.00 0.00 0.00 2.01
545 2493 5.767277 TTCTAACCCTTTACCTAACTGGG 57.233 43.478 0.00 0.00 43.26 4.45
561 2514 0.475044 TGGGTTTACCAGGGTCACAC 59.525 55.000 0.00 0.00 46.80 3.82
568 2521 1.661463 ACCAGGGTCACACATCATCT 58.339 50.000 0.00 0.00 0.00 2.90
572 2525 4.968719 ACCAGGGTCACACATCATCTAATA 59.031 41.667 0.00 0.00 0.00 0.98
607 2567 0.958822 CAAGCCACCAACTAACCCAC 59.041 55.000 0.00 0.00 0.00 4.61
612 2572 1.223187 CACCAACTAACCCACGTGTC 58.777 55.000 15.65 0.00 0.00 3.67
613 2573 1.125633 ACCAACTAACCCACGTGTCT 58.874 50.000 15.65 0.44 0.00 3.41
617 2582 3.399330 CAACTAACCCACGTGTCTCAAT 58.601 45.455 15.65 0.00 0.00 2.57
618 2583 3.764237 ACTAACCCACGTGTCTCAATT 57.236 42.857 15.65 2.00 0.00 2.32
620 2585 4.457466 ACTAACCCACGTGTCTCAATTTT 58.543 39.130 15.65 0.00 0.00 1.82
626 2591 4.084013 CCCACGTGTCTCAATTTTGTACTC 60.084 45.833 15.65 0.00 0.00 2.59
627 2592 4.084013 CCACGTGTCTCAATTTTGTACTCC 60.084 45.833 15.65 0.00 0.00 3.85
630 2595 4.084013 CGTGTCTCAATTTTGTACTCCACC 60.084 45.833 0.00 0.00 0.00 4.61
640 2605 2.579657 TACTCCACCCGGTGCACTG 61.580 63.158 19.25 19.25 31.34 3.66
648 2613 2.639286 CGGTGCACTGCAAAGTCC 59.361 61.111 17.98 1.65 41.47 3.85
649 2614 1.893808 CGGTGCACTGCAAAGTCCT 60.894 57.895 17.98 0.00 41.47 3.85
652 2617 1.024271 GTGCACTGCAAAGTCCTCAA 58.976 50.000 10.32 0.00 41.47 3.02
653 2618 1.405105 GTGCACTGCAAAGTCCTCAAA 59.595 47.619 10.32 0.00 41.47 2.69
654 2619 2.098614 TGCACTGCAAAGTCCTCAAAA 58.901 42.857 0.00 0.00 34.76 2.44
655 2620 2.694628 TGCACTGCAAAGTCCTCAAAAT 59.305 40.909 0.00 0.00 34.76 1.82
656 2621 3.888323 TGCACTGCAAAGTCCTCAAAATA 59.112 39.130 0.00 0.00 34.76 1.40
657 2622 4.340666 TGCACTGCAAAGTCCTCAAAATAA 59.659 37.500 0.00 0.00 34.76 1.40
658 2623 4.919754 GCACTGCAAAGTCCTCAAAATAAG 59.080 41.667 0.00 0.00 0.00 1.73
659 2624 5.507985 GCACTGCAAAGTCCTCAAAATAAGT 60.508 40.000 0.00 0.00 0.00 2.24
660 2625 5.916883 CACTGCAAAGTCCTCAAAATAAGTG 59.083 40.000 0.00 0.00 0.00 3.16
662 2627 6.072112 TGCAAAGTCCTCAAAATAAGTGTC 57.928 37.500 0.00 0.00 0.00 3.67
664 2629 6.017109 TGCAAAGTCCTCAAAATAAGTGTCTC 60.017 38.462 0.00 0.00 0.00 3.36
665 2630 6.017109 GCAAAGTCCTCAAAATAAGTGTCTCA 60.017 38.462 0.00 0.00 0.00 3.27
668 2633 8.697507 AAGTCCTCAAAATAAGTGTCTCAATT 57.302 30.769 0.00 0.00 0.00 2.32
669 2634 8.697507 AGTCCTCAAAATAAGTGTCTCAATTT 57.302 30.769 0.00 0.00 0.00 1.82
670 2635 9.136323 AGTCCTCAAAATAAGTGTCTCAATTTT 57.864 29.630 0.00 0.00 33.07 1.82
671 2636 9.185192 GTCCTCAAAATAAGTGTCTCAATTTTG 57.815 33.333 11.32 11.32 44.73 2.44
672 2637 8.912988 TCCTCAAAATAAGTGTCTCAATTTTGT 58.087 29.630 15.19 0.00 44.18 2.83
675 2640 9.959749 TCAAAATAAGTGTCTCAATTTTGTACC 57.040 29.630 15.19 0.00 44.18 3.34
676 2641 9.743057 CAAAATAAGTGTCTCAATTTTGTACCA 57.257 29.630 9.93 0.00 41.26 3.25
678 2643 9.744468 AAATAAGTGTCTCAATTTTGTACCAAC 57.256 29.630 0.00 0.00 0.00 3.77
679 2644 8.691661 ATAAGTGTCTCAATTTTGTACCAACT 57.308 30.769 0.00 0.00 0.00 3.16
680 2645 7.404671 AAGTGTCTCAATTTTGTACCAACTT 57.595 32.000 0.00 0.00 0.00 2.66
681 2646 7.404671 AGTGTCTCAATTTTGTACCAACTTT 57.595 32.000 0.00 0.00 0.00 2.66
682 2647 8.514330 AGTGTCTCAATTTTGTACCAACTTTA 57.486 30.769 0.00 0.00 0.00 1.85
683 2648 8.621286 AGTGTCTCAATTTTGTACCAACTTTAG 58.379 33.333 0.00 0.00 0.00 1.85
684 2649 8.403236 GTGTCTCAATTTTGTACCAACTTTAGT 58.597 33.333 0.00 0.00 0.00 2.24
685 2650 9.616156 TGTCTCAATTTTGTACCAACTTTAGTA 57.384 29.630 0.00 0.00 0.00 1.82
759 2724 7.783119 AGTATATATCTGTATATTGTCGCCCCA 59.217 37.037 0.00 0.00 35.59 4.96
773 2738 1.032794 GCCCCAAGCCAGCTTTATAC 58.967 55.000 1.19 0.00 33.42 1.47
799 2764 4.054780 ACAGTTGTCGTCAAGCTTTCTA 57.945 40.909 0.00 0.00 33.97 2.10
802 2767 5.050091 ACAGTTGTCGTCAAGCTTTCTAATG 60.050 40.000 0.00 0.00 33.97 1.90
804 2769 5.758296 AGTTGTCGTCAAGCTTTCTAATGAA 59.242 36.000 0.00 0.00 33.97 2.57
805 2770 5.591643 TGTCGTCAAGCTTTCTAATGAAC 57.408 39.130 0.00 0.00 31.02 3.18
806 2771 5.053811 TGTCGTCAAGCTTTCTAATGAACA 58.946 37.500 0.00 0.00 31.02 3.18
807 2772 5.177511 TGTCGTCAAGCTTTCTAATGAACAG 59.822 40.000 0.00 0.00 31.02 3.16
808 2773 5.405571 GTCGTCAAGCTTTCTAATGAACAGA 59.594 40.000 0.00 0.00 31.02 3.41
809 2774 6.091441 GTCGTCAAGCTTTCTAATGAACAGAT 59.909 38.462 0.00 0.00 31.02 2.90
810 2775 6.650807 TCGTCAAGCTTTCTAATGAACAGATT 59.349 34.615 0.00 0.00 31.02 2.40
811 2776 6.958193 CGTCAAGCTTTCTAATGAACAGATTC 59.042 38.462 0.00 0.00 35.18 2.52
812 2777 7.247019 GTCAAGCTTTCTAATGAACAGATTCC 58.753 38.462 0.00 0.00 33.49 3.01
813 2778 7.120432 GTCAAGCTTTCTAATGAACAGATTCCT 59.880 37.037 0.00 0.00 33.49 3.36
814 2779 7.667219 TCAAGCTTTCTAATGAACAGATTCCTT 59.333 33.333 0.00 0.00 33.49 3.36
815 2780 8.302438 CAAGCTTTCTAATGAACAGATTCCTTT 58.698 33.333 0.00 0.00 33.49 3.11
816 2781 7.824672 AGCTTTCTAATGAACAGATTCCTTTG 58.175 34.615 0.00 0.00 33.49 2.77
817 2782 7.031975 GCTTTCTAATGAACAGATTCCTTTGG 58.968 38.462 0.00 0.00 33.49 3.28
818 2783 7.309438 GCTTTCTAATGAACAGATTCCTTTGGT 60.309 37.037 0.00 0.00 33.49 3.67
819 2784 8.477419 TTTCTAATGAACAGATTCCTTTGGTT 57.523 30.769 0.00 0.00 33.49 3.67
820 2785 7.452880 TCTAATGAACAGATTCCTTTGGTTG 57.547 36.000 0.00 0.00 33.49 3.77
821 2786 5.473066 AATGAACAGATTCCTTTGGTTGG 57.527 39.130 0.00 0.00 33.49 3.77
822 2787 3.909732 TGAACAGATTCCTTTGGTTGGT 58.090 40.909 0.00 0.00 33.49 3.67
823 2788 3.888930 TGAACAGATTCCTTTGGTTGGTC 59.111 43.478 0.00 0.00 33.49 4.02
834 2799 2.519377 TGGTTGGTCTACGTGTGAAG 57.481 50.000 0.00 0.00 0.00 3.02
843 2808 3.659334 CGTGTGAAGCACATGCCT 58.341 55.556 6.81 0.00 46.32 4.75
847 2812 3.057548 TGAAGCACATGCCTGCCG 61.058 61.111 4.77 0.00 43.38 5.69
904 2880 2.492012 CTACTGCTGCAGATCCAATCC 58.508 52.381 34.28 0.00 35.18 3.01
907 2883 0.106868 TGCTGCAGATCCAATCCAGG 60.107 55.000 20.43 0.00 0.00 4.45
923 2899 2.672996 GGTCACGCCCACATGCTT 60.673 61.111 0.00 0.00 0.00 3.91
924 2900 2.690778 GGTCACGCCCACATGCTTC 61.691 63.158 0.00 0.00 0.00 3.86
927 2903 1.973281 CACGCCCACATGCTTCCTT 60.973 57.895 0.00 0.00 0.00 3.36
931 2907 0.392461 GCCCACATGCTTCCTTCGTA 60.392 55.000 0.00 0.00 0.00 3.43
960 2952 7.784633 GCTAGTTGCTCATTTCTCTATTCTT 57.215 36.000 0.00 0.00 38.95 2.52
961 2953 8.207521 GCTAGTTGCTCATTTCTCTATTCTTT 57.792 34.615 0.00 0.00 38.95 2.52
973 2965 5.971763 TCTCTATTCTTTCTTGTGCTCTCC 58.028 41.667 0.00 0.00 0.00 3.71
978 2970 1.627834 CTTTCTTGTGCTCTCCCCTCT 59.372 52.381 0.00 0.00 0.00 3.69
979 2971 1.270907 TTCTTGTGCTCTCCCCTCTC 58.729 55.000 0.00 0.00 0.00 3.20
982 2974 0.115152 TTGTGCTCTCCCCTCTCTCA 59.885 55.000 0.00 0.00 0.00 3.27
983 2975 0.613292 TGTGCTCTCCCCTCTCTCAC 60.613 60.000 0.00 0.00 0.00 3.51
984 2976 1.000993 TGCTCTCCCCTCTCTCACC 59.999 63.158 0.00 0.00 0.00 4.02
985 2977 1.309688 GCTCTCCCCTCTCTCACCT 59.690 63.158 0.00 0.00 0.00 4.00
987 2979 0.926293 CTCTCCCCTCTCTCACCTCT 59.074 60.000 0.00 0.00 0.00 3.69
990 2982 0.333312 TCCCCTCTCTCACCTCTGTC 59.667 60.000 0.00 0.00 0.00 3.51
1012 3006 1.619332 GGACTCCCCTATAAGAAGCCG 59.381 57.143 0.00 0.00 0.00 5.52
1042 3050 3.085952 TCCCTTTAGGCATCAACCAAG 57.914 47.619 0.00 0.00 34.51 3.61
1044 3052 2.450476 CCTTTAGGCATCAACCAAGCT 58.550 47.619 0.00 0.00 0.00 3.74
1049 3057 1.009829 GGCATCAACCAAGCTAGTCG 58.990 55.000 0.00 0.00 0.00 4.18
1074 3086 6.426980 TGCTACATATTCAGTCTTTGCAAG 57.573 37.500 0.00 0.00 0.00 4.01
1094 3106 0.321564 CAATCCTCGCCAACCAGACA 60.322 55.000 0.00 0.00 0.00 3.41
1191 3203 4.410400 CCAAGGTGAGGCCGGGAC 62.410 72.222 2.18 0.00 43.70 4.46
1204 3233 0.320771 CCGGGACTCCACTTGTTCTG 60.321 60.000 0.00 0.00 0.00 3.02
1223 3252 1.338864 TGCTCCTCGTCGAGTAAGTCT 60.339 52.381 20.37 0.00 32.11 3.24
1233 3263 3.188873 GTCGAGTAAGTCTGTGTAGCAGT 59.811 47.826 0.00 0.00 45.23 4.40
1234 3264 4.391216 GTCGAGTAAGTCTGTGTAGCAGTA 59.609 45.833 0.00 0.00 45.23 2.74
1235 3265 4.630505 TCGAGTAAGTCTGTGTAGCAGTAG 59.369 45.833 0.00 0.00 45.23 2.57
1236 3266 4.392445 CGAGTAAGTCTGTGTAGCAGTAGT 59.608 45.833 0.00 0.00 45.23 2.73
1237 3267 5.446206 CGAGTAAGTCTGTGTAGCAGTAGTC 60.446 48.000 0.00 0.00 45.23 2.59
1238 3268 3.833545 AAGTCTGTGTAGCAGTAGTCG 57.166 47.619 0.00 0.00 45.23 4.18
1261 3292 1.180456 TGACATTGGTTGGCTGCCTG 61.180 55.000 21.03 10.95 32.91 4.85
1264 3311 2.280552 ATTGGTTGGCTGCCTGCAG 61.281 57.895 21.03 14.70 45.15 4.41
1295 3342 3.425713 CTGCGACAAGTGCGGCAT 61.426 61.111 5.72 0.00 34.49 4.40
1309 3356 2.673523 GCATCTGCACCAGGTCCT 59.326 61.111 0.00 0.00 41.59 3.85
1344 3391 0.250209 GATGCATGGACATCTCGCCT 60.250 55.000 2.46 0.00 42.63 5.52
1419 3472 0.403271 ACAGCTTCCAGTGCAAGGAT 59.597 50.000 9.74 0.00 34.56 3.24
1420 3473 1.202976 ACAGCTTCCAGTGCAAGGATT 60.203 47.619 9.74 0.00 34.56 3.01
1421 3474 1.891150 CAGCTTCCAGTGCAAGGATTT 59.109 47.619 9.74 0.00 34.56 2.17
1426 3479 3.438216 TCCAGTGCAAGGATTTCATCA 57.562 42.857 5.08 0.00 0.00 3.07
1438 3491 3.426695 GGATTTCATCACCAACTTCTGCG 60.427 47.826 0.00 0.00 0.00 5.18
1489 3552 2.740447 GACCTGTTGTCCACCGAATAAC 59.260 50.000 0.00 0.00 38.09 1.89
1490 3553 2.081462 CCTGTTGTCCACCGAATAACC 58.919 52.381 0.00 0.00 0.00 2.85
1505 3568 1.575419 TAACCCCGATTAGCCTGTGT 58.425 50.000 0.00 0.00 0.00 3.72
1561 8330 4.316645 CATCTTGATCTGGTAGATGCAGG 58.683 47.826 11.80 0.00 38.95 4.85
1586 8355 6.127814 GGAAGAAATGAGAGTTCAATGCATGA 60.128 38.462 0.00 0.00 36.78 3.07
1608 8377 3.869065 TCGTTGTTCCTTCTTGTGTCTT 58.131 40.909 0.00 0.00 0.00 3.01
1621 8394 8.017946 CCTTCTTGTGTCTTAAATAAAGAGCAC 58.982 37.037 10.71 10.71 44.94 4.40
1671 8444 1.132262 CCATTTATGCTTTGCGACCGT 59.868 47.619 0.00 0.00 0.00 4.83
1683 8456 4.808077 TTGCGACCGTTAAAACACATAA 57.192 36.364 0.00 0.00 0.00 1.90
1748 8528 2.477825 CATGTAGAGGCACGAATGGAG 58.522 52.381 0.00 0.00 0.00 3.86
1772 8556 4.202192 TGCATTCATGTACAAAGCACCAAA 60.202 37.500 0.00 0.00 0.00 3.28
1865 8667 6.007703 TCAAACCCAGTCCAAATACTTTAGG 58.992 40.000 0.00 0.00 0.00 2.69
1900 8702 5.905480 AAAATCCAACGAATCACAAAAGC 57.095 34.783 0.00 0.00 0.00 3.51
1912 8714 4.998671 TCACAAAAGCTTGATTTCCACA 57.001 36.364 0.00 0.00 36.33 4.17
1915 8717 4.268405 CACAAAAGCTTGATTTCCACACAC 59.732 41.667 0.00 0.00 36.33 3.82
1977 8780 9.052759 AACATCGTGTTGAAACTATAGTTTTCT 57.947 29.630 27.27 9.84 41.02 2.52
1993 8797 6.396829 AGTTTTCTTGAAATGAAGGGTGAG 57.603 37.500 0.00 0.00 31.23 3.51
2005 8810 4.651778 TGAAGGGTGAGTTTTGTAGATGG 58.348 43.478 0.00 0.00 0.00 3.51
2038 8848 8.433421 TGTTAGGAGTTACTATTTATTGCAGC 57.567 34.615 0.00 0.00 0.00 5.25
2040 8850 9.110502 GTTAGGAGTTACTATTTATTGCAGCTT 57.889 33.333 0.00 0.00 0.00 3.74
2049 8860 7.978982 ACTATTTATTGCAGCTTACAAGTCTG 58.021 34.615 5.28 8.25 35.04 3.51
2052 8863 6.721571 TTATTGCAGCTTACAAGTCTGTAC 57.278 37.500 5.28 0.00 37.77 2.90
2101 8919 8.413229 CAGTAAATTTAAACCCACTATGGATGG 58.587 37.037 0.00 0.00 40.96 3.51
2109 8927 5.101254 ACCCACTATGGATGGTTAGGATA 57.899 43.478 0.00 0.00 40.96 2.59
2115 8934 8.386264 CCACTATGGATGGTTAGGATAGATTTT 58.614 37.037 0.00 0.00 40.96 1.82
2184 9003 4.562767 ACAAAAGGGAAGGTTTTACCCAT 58.437 39.130 0.00 0.00 45.43 4.00
2196 9016 5.605069 AGGTTTTACCCATTTTAGCAGGTTT 59.395 36.000 0.00 0.00 39.75 3.27
2212 9032 4.982295 GCAGGTTTTTGTGTATTGACCTTC 59.018 41.667 0.00 0.00 35.43 3.46
2218 9038 3.478857 TGTGTATTGACCTTCGTTGGT 57.521 42.857 2.02 2.02 44.10 3.67
2243 9063 3.121030 AGCCGCGATGTTGTGCTC 61.121 61.111 8.23 0.00 0.00 4.26
2264 9084 2.249557 GACAAGTGCGGCATCTGCAG 62.250 60.000 7.63 7.63 44.21 4.41
2274 9094 1.654954 GCATCTGCAGCAGGTCCTTG 61.655 60.000 22.62 12.76 41.59 3.61
2328 9148 2.866156 TCTCGTCACAAACTTCTGCAAG 59.134 45.455 0.00 0.00 35.50 4.01
2367 9187 0.948623 CGCGATTGGACCTGTTGTGA 60.949 55.000 0.00 0.00 0.00 3.58
2380 9200 2.746904 CTGTTGTGACCCGAATAATGCA 59.253 45.455 0.00 0.00 0.00 3.96
2393 9213 5.237127 CCGAATAATGCAGATTAGCTTGTGA 59.763 40.000 0.00 0.00 34.99 3.58
2398 9218 9.525409 AATAATGCAGATTAGCTTGTGATTTTC 57.475 29.630 0.00 0.00 34.99 2.29
2480 9300 9.225436 AGAGAAGAAATAAGAGTTTGATGTTCC 57.775 33.333 0.00 0.00 0.00 3.62
2484 9304 7.584987 AGAAATAAGAGTTTGATGTTCCGTTG 58.415 34.615 0.00 0.00 0.00 4.10
2485 9305 5.880054 ATAAGAGTTTGATGTTCCGTTGG 57.120 39.130 0.00 0.00 0.00 3.77
2486 9306 3.485463 AGAGTTTGATGTTCCGTTGGA 57.515 42.857 0.00 0.00 0.00 3.53
2487 9307 4.021102 AGAGTTTGATGTTCCGTTGGAT 57.979 40.909 0.00 0.00 0.00 3.41
2488 9308 4.398319 AGAGTTTGATGTTCCGTTGGATT 58.602 39.130 0.00 0.00 0.00 3.01
2489 9309 5.556915 AGAGTTTGATGTTCCGTTGGATTA 58.443 37.500 0.00 0.00 0.00 1.75
2490 9310 6.180472 AGAGTTTGATGTTCCGTTGGATTAT 58.820 36.000 0.00 0.00 0.00 1.28
2491 9311 6.094048 AGAGTTTGATGTTCCGTTGGATTATG 59.906 38.462 0.00 0.00 0.00 1.90
2526 9346 6.268387 AGGGCCCATATATGAAACAATTCTTG 59.732 38.462 27.56 0.00 36.48 3.02
2530 9350 9.598517 GCCCATATATGAAACAATTCTTGAAAA 57.401 29.630 14.54 0.00 36.48 2.29
2559 9380 2.444388 AGGCATATGTGGGTGTCATGAT 59.556 45.455 0.00 0.00 0.00 2.45
2562 9383 5.012239 GGCATATGTGGGTGTCATGATATT 58.988 41.667 0.00 0.00 0.00 1.28
2569 9390 2.033801 GGGTGTCATGATATTGTGCTGC 59.966 50.000 0.00 0.00 0.00 5.25
2582 9485 2.771089 TGTGCTGCAGAAAAGGAGTAG 58.229 47.619 20.43 0.00 0.00 2.57
2583 9486 1.466558 GTGCTGCAGAAAAGGAGTAGC 59.533 52.381 20.43 0.00 40.69 3.58
2584 9487 0.723981 GCTGCAGAAAAGGAGTAGCG 59.276 55.000 20.43 0.00 31.71 4.26
2586 9489 1.014044 TGCAGAAAAGGAGTAGCGCG 61.014 55.000 0.00 0.00 0.00 6.86
2588 9491 1.805945 AGAAAAGGAGTAGCGCGCG 60.806 57.895 28.44 28.44 0.00 6.86
2601 9504 4.649954 GCGCGCACACACACAGAC 62.650 66.667 29.10 0.00 0.00 3.51
2603 9506 2.894879 GCGCACACACACAGACCA 60.895 61.111 0.30 0.00 0.00 4.02
2604 9507 3.014036 CGCACACACACAGACCAC 58.986 61.111 0.00 0.00 0.00 4.16
2605 9508 1.813337 CGCACACACACAGACCACA 60.813 57.895 0.00 0.00 0.00 4.17
2607 9510 1.024046 GCACACACACAGACCACACA 61.024 55.000 0.00 0.00 0.00 3.72
2608 9511 1.667236 CACACACACAGACCACACAT 58.333 50.000 0.00 0.00 0.00 3.21
2609 9512 1.331447 CACACACACAGACCACACATG 59.669 52.381 0.00 0.00 0.00 3.21
2610 9513 0.308684 CACACACAGACCACACATGC 59.691 55.000 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.121142 GCGGCGACCTTAAAATATGCTATTA 59.879 40.000 12.98 0.00 0.00 0.98
10 11 3.435671 GCGGCGACCTTAAAATATGCTAT 59.564 43.478 12.98 0.00 0.00 2.97
15 16 6.435428 CAAAATAGCGGCGACCTTAAAATAT 58.565 36.000 12.98 0.00 0.00 1.28
16 17 5.731126 GCAAAATAGCGGCGACCTTAAAATA 60.731 40.000 12.98 0.00 0.00 1.40
18 19 3.671164 GCAAAATAGCGGCGACCTTAAAA 60.671 43.478 12.98 0.00 0.00 1.52
19 20 2.159490 GCAAAATAGCGGCGACCTTAAA 60.159 45.455 12.98 0.00 0.00 1.52
21 22 1.011333 GCAAAATAGCGGCGACCTTA 58.989 50.000 12.98 0.00 0.00 2.69
23 24 1.078426 AGCAAAATAGCGGCGACCT 60.078 52.632 12.98 0.56 40.15 3.85
25 26 1.003851 TACAGCAAAATAGCGGCGAC 58.996 50.000 12.98 1.23 40.15 5.19
26 27 1.286501 CTACAGCAAAATAGCGGCGA 58.713 50.000 12.98 0.00 40.15 5.54
27 28 0.316196 GCTACAGCAAAATAGCGGCG 60.316 55.000 0.51 0.51 41.59 6.46
31 32 0.373716 ACGCGCTACAGCAAAATAGC 59.626 50.000 5.73 0.00 42.21 2.97
32 33 2.806288 AACGCGCTACAGCAAAATAG 57.194 45.000 5.73 0.00 42.21 1.73
33 34 4.868450 AATAACGCGCTACAGCAAAATA 57.132 36.364 5.73 0.00 42.21 1.40
34 35 3.757745 AATAACGCGCTACAGCAAAAT 57.242 38.095 5.73 0.00 42.21 1.82
36 37 3.546002 AAAATAACGCGCTACAGCAAA 57.454 38.095 5.73 0.00 42.21 3.68
54 55 6.929606 TGTGCATCACAATGATCAATGAAAAA 59.070 30.769 17.65 0.44 41.69 1.94
56 57 6.026947 TGTGCATCACAATGATCAATGAAA 57.973 33.333 17.65 5.18 41.69 2.69
57 58 5.646577 TGTGCATCACAATGATCAATGAA 57.353 34.783 17.65 5.53 41.69 2.57
64 65 6.315642 GCTATAGCTATGTGCATCACAATGAT 59.684 38.462 17.75 1.99 45.94 2.45
66 67 5.410439 TGCTATAGCTATGTGCATCACAATG 59.590 40.000 24.61 1.78 43.98 2.82
68 69 4.959723 TGCTATAGCTATGTGCATCACAA 58.040 39.130 24.61 7.94 43.98 3.33
69 70 4.605640 TGCTATAGCTATGTGCATCACA 57.394 40.909 24.61 1.88 44.47 3.58
70 71 6.492007 AATTGCTATAGCTATGTGCATCAC 57.508 37.500 25.98 6.97 45.94 3.06
71 72 7.514784 AAAATTGCTATAGCTATGTGCATCA 57.485 32.000 25.98 17.58 45.94 3.07
96 97 9.255304 ACGTGCAATATGTTTTTGTCTTAAAAT 57.745 25.926 0.00 0.00 30.44 1.82
97 98 8.535592 CACGTGCAATATGTTTTTGTCTTAAAA 58.464 29.630 0.82 0.00 0.00 1.52
98 99 7.306283 GCACGTGCAATATGTTTTTGTCTTAAA 60.306 33.333 34.52 0.00 41.59 1.52
99 100 6.143118 GCACGTGCAATATGTTTTTGTCTTAA 59.857 34.615 34.52 0.00 41.59 1.85
100 101 5.627367 GCACGTGCAATATGTTTTTGTCTTA 59.373 36.000 34.52 0.00 41.59 2.10
101 102 4.444056 GCACGTGCAATATGTTTTTGTCTT 59.556 37.500 34.52 0.00 41.59 3.01
103 104 3.121113 GGCACGTGCAATATGTTTTTGTC 59.879 43.478 38.60 14.71 44.36 3.18
104 105 3.056304 GGCACGTGCAATATGTTTTTGT 58.944 40.909 38.60 0.00 44.36 2.83
105 106 3.703558 GGCACGTGCAATATGTTTTTG 57.296 42.857 38.60 0.00 44.36 2.44
121 122 3.181520 GCCATCGATATGTAAATCGGCAC 60.182 47.826 11.50 0.00 46.81 5.01
122 123 3.000041 GCCATCGATATGTAAATCGGCA 59.000 45.455 11.50 0.00 46.81 5.69
123 124 2.351726 GGCCATCGATATGTAAATCGGC 59.648 50.000 0.00 8.64 46.81 5.54
124 125 2.603110 CGGCCATCGATATGTAAATCGG 59.397 50.000 2.24 0.00 46.81 4.18
136 137 2.286127 TTATGCACGTCGGCCATCGA 62.286 55.000 20.68 1.38 46.77 3.59
137 138 1.821241 CTTATGCACGTCGGCCATCG 61.821 60.000 13.78 13.78 40.90 3.84
138 139 1.498865 CCTTATGCACGTCGGCCATC 61.499 60.000 2.24 0.00 0.00 3.51
139 140 1.523711 CCTTATGCACGTCGGCCAT 60.524 57.895 2.24 1.14 0.00 4.40
140 141 1.966901 ATCCTTATGCACGTCGGCCA 61.967 55.000 2.24 0.00 0.00 5.36
141 142 1.227556 ATCCTTATGCACGTCGGCC 60.228 57.895 0.00 0.00 0.00 6.13
142 143 0.810031 ACATCCTTATGCACGTCGGC 60.810 55.000 0.00 0.00 36.50 5.54
144 145 5.403897 AATTAACATCCTTATGCACGTCG 57.596 39.130 0.00 0.00 36.50 5.12
145 146 7.540745 ACAAAAATTAACATCCTTATGCACGTC 59.459 33.333 0.00 0.00 36.50 4.34
146 147 7.375053 ACAAAAATTAACATCCTTATGCACGT 58.625 30.769 0.00 0.00 36.50 4.49
148 149 9.202273 TCAACAAAAATTAACATCCTTATGCAC 57.798 29.630 0.00 0.00 36.50 4.57
149 150 9.770097 TTCAACAAAAATTAACATCCTTATGCA 57.230 25.926 0.00 0.00 36.50 3.96
168 169 8.808529 CGTATGTGGTGTTTAATTTTTCAACAA 58.191 29.630 0.00 0.00 32.32 2.83
169 170 7.974501 ACGTATGTGGTGTTTAATTTTTCAACA 59.025 29.630 0.00 0.00 0.00 3.33
170 171 8.342725 ACGTATGTGGTGTTTAATTTTTCAAC 57.657 30.769 0.00 0.00 0.00 3.18
171 172 9.448294 GTACGTATGTGGTGTTTAATTTTTCAA 57.552 29.630 0.00 0.00 0.00 2.69
172 173 8.618677 TGTACGTATGTGGTGTTTAATTTTTCA 58.381 29.630 0.00 0.00 0.00 2.69
173 174 9.448294 TTGTACGTATGTGGTGTTTAATTTTTC 57.552 29.630 0.00 0.00 0.00 2.29
174 175 9.968870 ATTGTACGTATGTGGTGTTTAATTTTT 57.031 25.926 0.00 0.00 0.00 1.94
175 176 9.400638 CATTGTACGTATGTGGTGTTTAATTTT 57.599 29.630 0.00 0.00 0.00 1.82
176 177 8.784994 TCATTGTACGTATGTGGTGTTTAATTT 58.215 29.630 0.00 0.00 0.00 1.82
177 178 8.231837 GTCATTGTACGTATGTGGTGTTTAATT 58.768 33.333 0.00 0.00 0.00 1.40
178 179 7.388224 TGTCATTGTACGTATGTGGTGTTTAAT 59.612 33.333 0.00 0.00 0.00 1.40
180 181 6.221659 TGTCATTGTACGTATGTGGTGTTTA 58.778 36.000 0.00 0.00 0.00 2.01
181 182 5.057819 TGTCATTGTACGTATGTGGTGTTT 58.942 37.500 0.00 0.00 0.00 2.83
182 183 4.633175 TGTCATTGTACGTATGTGGTGTT 58.367 39.130 0.00 0.00 0.00 3.32
183 184 4.260139 TGTCATTGTACGTATGTGGTGT 57.740 40.909 0.00 0.00 0.00 4.16
184 185 4.867608 TCATGTCATTGTACGTATGTGGTG 59.132 41.667 0.00 0.00 0.00 4.17
185 186 5.079689 TCATGTCATTGTACGTATGTGGT 57.920 39.130 0.00 0.00 0.00 4.16
186 187 5.348164 TCTCATGTCATTGTACGTATGTGG 58.652 41.667 0.00 0.00 0.00 4.17
187 188 6.531594 ACTTCTCATGTCATTGTACGTATGTG 59.468 38.462 0.00 0.00 0.00 3.21
188 189 6.631016 ACTTCTCATGTCATTGTACGTATGT 58.369 36.000 0.00 0.00 0.00 2.29
189 190 6.751888 TGACTTCTCATGTCATTGTACGTATG 59.248 38.462 0.00 0.00 39.23 2.39
190 191 6.863275 TGACTTCTCATGTCATTGTACGTAT 58.137 36.000 0.00 0.00 39.23 3.06
191 192 6.262193 TGACTTCTCATGTCATTGTACGTA 57.738 37.500 0.00 0.00 39.23 3.57
192 193 5.134202 TGACTTCTCATGTCATTGTACGT 57.866 39.130 0.00 0.00 39.23 3.57
195 196 7.119699 GTCCATTTGACTTCTCATGTCATTGTA 59.880 37.037 0.00 0.00 42.95 2.41
196 197 6.005823 TCCATTTGACTTCTCATGTCATTGT 58.994 36.000 0.00 0.00 42.95 2.71
198 199 6.005823 TGTCCATTTGACTTCTCATGTCATT 58.994 36.000 0.00 0.00 44.75 2.57
199 200 5.563592 TGTCCATTTGACTTCTCATGTCAT 58.436 37.500 0.00 0.00 44.75 3.06
200 201 4.971939 TGTCCATTTGACTTCTCATGTCA 58.028 39.130 0.00 0.00 44.75 3.58
201 202 5.106396 CCTTGTCCATTTGACTTCTCATGTC 60.106 44.000 0.00 0.00 44.75 3.06
203 204 4.380233 GCCTTGTCCATTTGACTTCTCATG 60.380 45.833 0.00 0.00 44.75 3.07
205 206 3.149196 GCCTTGTCCATTTGACTTCTCA 58.851 45.455 0.00 0.00 44.75 3.27
206 207 3.057946 GTGCCTTGTCCATTTGACTTCTC 60.058 47.826 0.00 0.00 44.75 2.87
207 208 2.887152 GTGCCTTGTCCATTTGACTTCT 59.113 45.455 0.00 0.00 44.75 2.85
209 210 2.665165 TGTGCCTTGTCCATTTGACTT 58.335 42.857 0.00 0.00 44.75 3.01
210 211 2.363306 TGTGCCTTGTCCATTTGACT 57.637 45.000 0.00 0.00 44.75 3.41
211 212 2.362077 ACTTGTGCCTTGTCCATTTGAC 59.638 45.455 0.00 0.00 44.72 3.18
212 213 2.361757 CACTTGTGCCTTGTCCATTTGA 59.638 45.455 0.00 0.00 0.00 2.69
213 214 2.101249 ACACTTGTGCCTTGTCCATTTG 59.899 45.455 0.10 0.00 0.00 2.32
215 216 2.071778 ACACTTGTGCCTTGTCCATT 57.928 45.000 0.10 0.00 0.00 3.16
216 217 1.956477 GAACACTTGTGCCTTGTCCAT 59.044 47.619 0.10 0.00 0.00 3.41
217 218 1.064758 AGAACACTTGTGCCTTGTCCA 60.065 47.619 0.10 0.00 0.00 4.02
218 219 1.604278 GAGAACACTTGTGCCTTGTCC 59.396 52.381 0.10 0.00 0.00 4.02
219 220 2.565841 AGAGAACACTTGTGCCTTGTC 58.434 47.619 0.10 0.00 0.00 3.18
220 221 2.717639 AGAGAACACTTGTGCCTTGT 57.282 45.000 0.10 0.00 0.00 3.16
222 223 2.099756 GCAAAGAGAACACTTGTGCCTT 59.900 45.455 0.10 0.00 32.96 4.35
223 224 1.678101 GCAAAGAGAACACTTGTGCCT 59.322 47.619 0.10 0.00 32.96 4.75
224 225 1.405105 TGCAAAGAGAACACTTGTGCC 59.595 47.619 0.10 0.00 35.38 5.01
226 227 3.763097 TGTGCAAAGAGAACACTTGTG 57.237 42.857 0.00 0.00 35.33 3.33
227 228 4.009675 TCTTGTGCAAAGAGAACACTTGT 58.990 39.130 7.09 0.00 35.33 3.16
228 229 4.621068 TCTTGTGCAAAGAGAACACTTG 57.379 40.909 7.09 0.00 35.33 3.16
229 230 5.841957 ATTCTTGTGCAAAGAGAACACTT 57.158 34.783 9.13 0.00 35.33 3.16
230 231 5.357878 TCAATTCTTGTGCAAAGAGAACACT 59.642 36.000 9.13 0.00 35.33 3.55
231 232 5.581605 TCAATTCTTGTGCAAAGAGAACAC 58.418 37.500 9.13 0.00 32.73 3.32
232 233 5.589855 TCTCAATTCTTGTGCAAAGAGAACA 59.410 36.000 9.13 0.00 32.73 3.18
233 234 6.017605 TCTCTCAATTCTTGTGCAAAGAGAAC 60.018 38.462 9.13 0.00 34.60 3.01
234 235 6.057533 TCTCTCAATTCTTGTGCAAAGAGAA 58.942 36.000 9.31 9.31 34.60 2.87
235 236 5.614308 TCTCTCAATTCTTGTGCAAAGAGA 58.386 37.500 10.02 7.34 34.93 3.10
237 238 7.389232 TCTATCTCTCAATTCTTGTGCAAAGA 58.611 34.615 7.09 7.09 0.00 2.52
238 239 7.606858 TCTATCTCTCAATTCTTGTGCAAAG 57.393 36.000 0.00 0.00 0.00 2.77
239 240 7.010830 CGATCTATCTCTCAATTCTTGTGCAAA 59.989 37.037 0.00 0.00 0.00 3.68
242 243 5.404968 CCGATCTATCTCTCAATTCTTGTGC 59.595 44.000 0.00 0.00 0.00 4.57
245 246 4.928615 GGCCGATCTATCTCTCAATTCTTG 59.071 45.833 0.00 0.00 0.00 3.02
246 247 4.020662 GGGCCGATCTATCTCTCAATTCTT 60.021 45.833 0.00 0.00 0.00 2.52
247 248 3.513515 GGGCCGATCTATCTCTCAATTCT 59.486 47.826 0.00 0.00 0.00 2.40
248 249 3.259374 TGGGCCGATCTATCTCTCAATTC 59.741 47.826 0.00 0.00 0.00 2.17
251 252 2.381752 TGGGCCGATCTATCTCTCAA 57.618 50.000 0.00 0.00 0.00 3.02
252 253 2.242926 CTTGGGCCGATCTATCTCTCA 58.757 52.381 0.00 0.00 0.00 3.27
253 254 2.230266 GACTTGGGCCGATCTATCTCTC 59.770 54.545 0.00 0.00 0.00 3.20
254 255 2.243810 GACTTGGGCCGATCTATCTCT 58.756 52.381 0.00 0.00 0.00 3.10
255 256 1.964223 TGACTTGGGCCGATCTATCTC 59.036 52.381 0.00 0.00 0.00 2.75
256 257 2.088104 TGACTTGGGCCGATCTATCT 57.912 50.000 0.00 0.00 0.00 1.98
257 258 2.300152 TCATGACTTGGGCCGATCTATC 59.700 50.000 0.00 0.00 0.00 2.08
260 261 0.467384 CTCATGACTTGGGCCGATCT 59.533 55.000 0.00 0.00 0.00 2.75
261 262 1.162800 GCTCATGACTTGGGCCGATC 61.163 60.000 1.70 0.00 46.91 3.69
262 263 1.153086 GCTCATGACTTGGGCCGAT 60.153 57.895 1.70 0.00 46.91 4.18
263 264 2.268920 GCTCATGACTTGGGCCGA 59.731 61.111 1.70 0.00 46.91 5.54
267 268 2.289882 TGACTGAAGCTCATGACTTGGG 60.290 50.000 13.14 8.98 0.00 4.12
268 269 3.049708 TGACTGAAGCTCATGACTTGG 57.950 47.619 13.14 9.23 0.00 3.61
270 271 4.649692 ACAATGACTGAAGCTCATGACTT 58.350 39.130 9.42 9.42 0.00 3.01
271 272 4.283363 ACAATGACTGAAGCTCATGACT 57.717 40.909 0.00 0.00 0.00 3.41
272 273 4.694509 AGAACAATGACTGAAGCTCATGAC 59.305 41.667 0.00 0.00 0.00 3.06
273 274 4.903054 AGAACAATGACTGAAGCTCATGA 58.097 39.130 0.00 0.00 0.00 3.07
274 275 4.936411 AGAGAACAATGACTGAAGCTCATG 59.064 41.667 0.00 0.00 0.00 3.07
275 276 5.163281 AGAGAACAATGACTGAAGCTCAT 57.837 39.130 0.00 0.00 0.00 2.90
276 277 4.613925 AGAGAACAATGACTGAAGCTCA 57.386 40.909 0.00 0.00 0.00 4.26
277 278 5.237048 AGAAGAGAACAATGACTGAAGCTC 58.763 41.667 0.00 0.00 0.00 4.09
278 279 5.226194 AGAAGAGAACAATGACTGAAGCT 57.774 39.130 0.00 0.00 0.00 3.74
279 280 5.106752 GGAAGAAGAGAACAATGACTGAAGC 60.107 44.000 0.00 0.00 0.00 3.86
280 281 5.994054 TGGAAGAAGAGAACAATGACTGAAG 59.006 40.000 0.00 0.00 0.00 3.02
281 282 5.760253 GTGGAAGAAGAGAACAATGACTGAA 59.240 40.000 0.00 0.00 0.00 3.02
283 284 5.303971 AGTGGAAGAAGAGAACAATGACTG 58.696 41.667 0.00 0.00 0.00 3.51
284 285 5.559148 AGTGGAAGAAGAGAACAATGACT 57.441 39.130 0.00 0.00 0.00 3.41
285 286 6.692486 TCTAGTGGAAGAAGAGAACAATGAC 58.308 40.000 0.00 0.00 0.00 3.06
286 287 6.918067 TCTAGTGGAAGAAGAGAACAATGA 57.082 37.500 0.00 0.00 0.00 2.57
287 288 6.036953 GCATCTAGTGGAAGAAGAGAACAATG 59.963 42.308 0.00 0.00 0.00 2.82
289 290 5.012046 TGCATCTAGTGGAAGAAGAGAACAA 59.988 40.000 0.00 0.00 0.00 2.83
290 291 4.528206 TGCATCTAGTGGAAGAAGAGAACA 59.472 41.667 0.00 0.00 0.00 3.18
292 293 4.528206 TGTGCATCTAGTGGAAGAAGAGAA 59.472 41.667 0.00 0.00 0.00 2.87
294 295 4.462508 TGTGCATCTAGTGGAAGAAGAG 57.537 45.455 0.00 0.00 0.00 2.85
295 296 5.426689 AATGTGCATCTAGTGGAAGAAGA 57.573 39.130 0.00 0.00 0.00 2.87
296 297 6.820656 AGTAAATGTGCATCTAGTGGAAGAAG 59.179 38.462 0.00 0.00 0.00 2.85
298 299 6.299805 AGTAAATGTGCATCTAGTGGAAGA 57.700 37.500 0.00 0.00 0.00 2.87
299 300 7.223582 CACTAGTAAATGTGCATCTAGTGGAAG 59.776 40.741 20.39 6.20 46.76 3.46
302 303 6.834959 CACTAGTAAATGTGCATCTAGTGG 57.165 41.667 20.39 6.81 46.76 4.00
312 313 3.059257 TGTTGCGTGCACTAGTAAATGTG 60.059 43.478 16.19 0.00 37.26 3.21
313 314 3.135225 TGTTGCGTGCACTAGTAAATGT 58.865 40.909 16.19 0.00 0.00 2.71
314 315 3.804518 TGTTGCGTGCACTAGTAAATG 57.195 42.857 16.19 0.00 0.00 2.32
315 316 4.062293 TCTTGTTGCGTGCACTAGTAAAT 58.938 39.130 16.19 0.00 0.00 1.40
316 317 3.459145 TCTTGTTGCGTGCACTAGTAAA 58.541 40.909 16.19 3.30 0.00 2.01
317 318 3.057019 CTCTTGTTGCGTGCACTAGTAA 58.943 45.455 16.19 3.09 0.00 2.24
318 319 2.295070 TCTCTTGTTGCGTGCACTAGTA 59.705 45.455 16.19 0.00 0.00 1.82
320 321 1.783284 TCTCTTGTTGCGTGCACTAG 58.217 50.000 16.19 0.69 0.00 2.57
323 324 1.678360 CAATCTCTTGTTGCGTGCAC 58.322 50.000 6.82 6.82 0.00 4.57
324 325 0.040157 GCAATCTCTTGTTGCGTGCA 60.040 50.000 0.00 0.00 42.01 4.57
330 331 4.213564 AGGGAGTAGCAATCTCTTGTTG 57.786 45.455 0.00 0.00 34.69 3.33
331 332 4.917906 AAGGGAGTAGCAATCTCTTGTT 57.082 40.909 0.00 0.00 36.13 2.83
333 334 4.583871 ACAAAGGGAGTAGCAATCTCTTG 58.416 43.478 0.00 1.91 37.55 3.02
334 335 4.323868 GGACAAAGGGAGTAGCAATCTCTT 60.324 45.833 0.00 0.00 39.20 2.85
335 336 3.198853 GGACAAAGGGAGTAGCAATCTCT 59.801 47.826 0.00 0.00 33.06 3.10
336 337 3.536570 GGACAAAGGGAGTAGCAATCTC 58.463 50.000 0.00 0.00 0.00 2.75
337 338 2.239907 GGGACAAAGGGAGTAGCAATCT 59.760 50.000 0.00 0.00 0.00 2.40
338 339 2.644676 GGGACAAAGGGAGTAGCAATC 58.355 52.381 0.00 0.00 0.00 2.67
339 340 1.065418 CGGGACAAAGGGAGTAGCAAT 60.065 52.381 0.00 0.00 0.00 3.56
342 343 0.611714 TTCGGGACAAAGGGAGTAGC 59.388 55.000 0.00 0.00 0.00 3.58
343 344 3.629142 AATTCGGGACAAAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
345 346 2.910977 AGTAATTCGGGACAAAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
348 349 3.418047 ACAAGTAATTCGGGACAAAGGG 58.582 45.455 0.00 0.00 0.00 3.95
349 350 3.124636 CGACAAGTAATTCGGGACAAAGG 59.875 47.826 0.00 0.00 0.00 3.11
350 351 3.744426 ACGACAAGTAATTCGGGACAAAG 59.256 43.478 0.00 0.00 39.63 2.77
354 355 3.836949 TGTACGACAAGTAATTCGGGAC 58.163 45.455 0.00 0.00 39.63 4.46
356 357 5.121142 ACAATTGTACGACAAGTAATTCGGG 59.879 40.000 9.97 0.00 41.94 5.14
357 358 6.160664 ACAATTGTACGACAAGTAATTCGG 57.839 37.500 9.97 0.00 41.94 4.30
364 365 8.879759 CCAATTCTATACAATTGTACGACAAGT 58.120 33.333 20.26 7.76 41.94 3.16
365 366 9.093970 TCCAATTCTATACAATTGTACGACAAG 57.906 33.333 20.26 12.30 41.94 3.16
366 367 9.607988 ATCCAATTCTATACAATTGTACGACAA 57.392 29.630 20.26 11.04 42.95 3.18
367 368 9.040939 CATCCAATTCTATACAATTGTACGACA 57.959 33.333 20.26 6.20 40.71 4.35
421 422 7.706179 CGAATTACTTGTGGCAAAAATGGATAT 59.294 33.333 0.00 0.00 0.00 1.63
422 423 7.032580 CGAATTACTTGTGGCAAAAATGGATA 58.967 34.615 0.00 0.00 0.00 2.59
423 424 5.868801 CGAATTACTTGTGGCAAAAATGGAT 59.131 36.000 0.00 0.00 0.00 3.41
424 425 5.226396 CGAATTACTTGTGGCAAAAATGGA 58.774 37.500 0.00 0.00 0.00 3.41
425 426 4.388469 CCGAATTACTTGTGGCAAAAATGG 59.612 41.667 0.00 0.00 0.00 3.16
426 427 4.388469 CCCGAATTACTTGTGGCAAAAATG 59.612 41.667 0.00 0.00 0.00 2.32
427 428 4.282195 TCCCGAATTACTTGTGGCAAAAAT 59.718 37.500 0.00 0.00 0.00 1.82
429 430 3.004944 GTCCCGAATTACTTGTGGCAAAA 59.995 43.478 0.00 0.00 0.00 2.44
430 431 2.554893 GTCCCGAATTACTTGTGGCAAA 59.445 45.455 0.00 0.00 0.00 3.68
434 435 3.190535 CCTTTGTCCCGAATTACTTGTGG 59.809 47.826 0.00 0.00 0.00 4.17
435 436 3.190535 CCCTTTGTCCCGAATTACTTGTG 59.809 47.826 0.00 0.00 0.00 3.33
436 437 3.073356 TCCCTTTGTCCCGAATTACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
438 439 3.329814 ACTCCCTTTGTCCCGAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
439 440 2.910977 ACTCCCTTTGTCCCGAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
440 441 3.345508 ACTCCCTTTGTCCCGAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
442 443 2.910977 AGTACTCCCTTTGTCCCGAATT 59.089 45.455 0.00 0.00 0.00 2.17
443 444 2.547990 AGTACTCCCTTTGTCCCGAAT 58.452 47.619 0.00 0.00 0.00 3.34
445 446 2.309755 TCTAGTACTCCCTTTGTCCCGA 59.690 50.000 0.00 0.00 0.00 5.14
446 447 2.688958 CTCTAGTACTCCCTTTGTCCCG 59.311 54.545 0.00 0.00 0.00 5.14
447 448 3.978610 TCTCTAGTACTCCCTTTGTCCC 58.021 50.000 0.00 0.00 0.00 4.46
448 449 4.202172 GCATCTCTAGTACTCCCTTTGTCC 60.202 50.000 0.00 0.00 0.00 4.02
451 452 5.112686 GTTGCATCTCTAGTACTCCCTTTG 58.887 45.833 0.00 0.00 0.00 2.77
453 454 4.353777 TGTTGCATCTCTAGTACTCCCTT 58.646 43.478 0.00 0.00 0.00 3.95
455 456 4.737855 TTGTTGCATCTCTAGTACTCCC 57.262 45.455 0.00 0.00 0.00 4.30
456 457 6.595716 ACAAATTGTTGCATCTCTAGTACTCC 59.404 38.462 0.00 0.00 38.39 3.85
460 461 9.151471 GTCTAACAAATTGTTGCATCTCTAGTA 57.849 33.333 20.40 0.00 41.30 1.82
462 463 7.176075 CGTCTAACAAATTGTTGCATCTCTAG 58.824 38.462 20.40 7.94 41.30 2.43
463 464 6.092122 CCGTCTAACAAATTGTTGCATCTCTA 59.908 38.462 20.40 0.00 41.30 2.43
464 465 5.106555 CCGTCTAACAAATTGTTGCATCTCT 60.107 40.000 20.40 0.00 41.30 3.10
465 466 5.088739 CCGTCTAACAAATTGTTGCATCTC 58.911 41.667 20.40 5.30 41.30 2.75
466 467 4.759693 TCCGTCTAACAAATTGTTGCATCT 59.240 37.500 20.40 0.00 41.30 2.90
467 468 5.041951 TCCGTCTAACAAATTGTTGCATC 57.958 39.130 20.40 7.98 41.30 3.91
468 469 4.759693 TCTCCGTCTAACAAATTGTTGCAT 59.240 37.500 20.40 0.00 41.30 3.96
479 480 8.147704 TGCATTCAAATATATCTCCGTCTAACA 58.852 33.333 0.00 0.00 0.00 2.41
480 481 8.534333 TGCATTCAAATATATCTCCGTCTAAC 57.466 34.615 0.00 0.00 0.00 2.34
482 483 8.367911 ACTTGCATTCAAATATATCTCCGTCTA 58.632 33.333 0.00 0.00 0.00 2.59
483 484 7.172190 CACTTGCATTCAAATATATCTCCGTCT 59.828 37.037 0.00 0.00 0.00 4.18
484 485 7.171508 TCACTTGCATTCAAATATATCTCCGTC 59.828 37.037 0.00 0.00 0.00 4.79
485 486 6.992123 TCACTTGCATTCAAATATATCTCCGT 59.008 34.615 0.00 0.00 0.00 4.69
486 487 7.425577 TCACTTGCATTCAAATATATCTCCG 57.574 36.000 0.00 0.00 0.00 4.63
487 488 8.078596 GGTTCACTTGCATTCAAATATATCTCC 58.921 37.037 0.00 0.00 0.00 3.71
488 489 7.800380 CGGTTCACTTGCATTCAAATATATCTC 59.200 37.037 0.00 0.00 0.00 2.75
490 491 7.587757 GTCGGTTCACTTGCATTCAAATATATC 59.412 37.037 0.00 0.00 0.00 1.63
492 493 6.456315 CGTCGGTTCACTTGCATTCAAATATA 60.456 38.462 0.00 0.00 0.00 0.86
493 494 5.640732 GTCGGTTCACTTGCATTCAAATAT 58.359 37.500 0.00 0.00 0.00 1.28
494 495 4.377943 CGTCGGTTCACTTGCATTCAAATA 60.378 41.667 0.00 0.00 0.00 1.40
495 496 3.609175 CGTCGGTTCACTTGCATTCAAAT 60.609 43.478 0.00 0.00 0.00 2.32
498 499 0.865111 CGTCGGTTCACTTGCATTCA 59.135 50.000 0.00 0.00 0.00 2.57
499 500 0.165944 CCGTCGGTTCACTTGCATTC 59.834 55.000 2.08 0.00 0.00 2.67
500 501 1.852067 GCCGTCGGTTCACTTGCATT 61.852 55.000 13.94 0.00 0.00 3.56
501 502 2.325082 GCCGTCGGTTCACTTGCAT 61.325 57.895 13.94 0.00 0.00 3.96
503 504 0.739813 ATAGCCGTCGGTTCACTTGC 60.740 55.000 13.94 0.00 0.00 4.01
504 505 1.722011 AATAGCCGTCGGTTCACTTG 58.278 50.000 13.94 0.00 0.00 3.16
505 506 2.028385 AGAAATAGCCGTCGGTTCACTT 60.028 45.455 13.94 1.09 0.00 3.16
506 507 1.549170 AGAAATAGCCGTCGGTTCACT 59.451 47.619 13.94 3.67 0.00 3.41
508 509 3.514645 GTTAGAAATAGCCGTCGGTTCA 58.485 45.455 13.94 0.00 0.00 3.18
522 2470 6.130692 CCCAGTTAGGTAAAGGGTTAGAAA 57.869 41.667 0.00 0.00 34.75 2.52
545 2493 3.134574 TGATGTGTGACCCTGGTAAAC 57.865 47.619 0.00 0.00 0.00 2.01
546 2494 3.587061 AGATGATGTGTGACCCTGGTAAA 59.413 43.478 0.00 0.00 0.00 2.01
549 2497 1.661463 AGATGATGTGTGACCCTGGT 58.339 50.000 0.00 0.00 0.00 4.00
550 2498 3.912496 TTAGATGATGTGTGACCCTGG 57.088 47.619 0.00 0.00 0.00 4.45
552 2500 8.497745 AGATTTTATTAGATGATGTGTGACCCT 58.502 33.333 0.00 0.00 0.00 4.34
553 2501 8.562892 CAGATTTTATTAGATGATGTGTGACCC 58.437 37.037 0.00 0.00 0.00 4.46
554 2502 8.562892 CCAGATTTTATTAGATGATGTGTGACC 58.437 37.037 0.00 0.00 0.00 4.02
561 2514 6.082338 GCGTGCCAGATTTTATTAGATGATG 58.918 40.000 0.00 0.00 0.00 3.07
568 2521 3.013219 TGCTGCGTGCCAGATTTTATTA 58.987 40.909 0.00 0.00 44.64 0.98
572 2525 0.038892 CTTGCTGCGTGCCAGATTTT 60.039 50.000 0.00 0.00 44.64 1.82
607 2567 4.084013 GGTGGAGTACAAAATTGAGACACG 60.084 45.833 0.00 0.00 0.00 4.49
612 2572 2.747446 CCGGGTGGAGTACAAAATTGAG 59.253 50.000 0.00 0.00 37.49 3.02
613 2573 2.106857 ACCGGGTGGAGTACAAAATTGA 59.893 45.455 6.32 0.00 39.21 2.57
617 2582 0.535553 GCACCGGGTGGAGTACAAAA 60.536 55.000 27.41 0.00 39.21 2.44
618 2583 1.071814 GCACCGGGTGGAGTACAAA 59.928 57.895 27.41 0.00 39.21 2.83
620 2585 2.524640 TGCACCGGGTGGAGTACA 60.525 61.111 27.41 14.05 39.21 2.90
627 2592 3.198236 CTTTGCAGTGCACCGGGTG 62.198 63.158 22.87 22.87 38.71 4.61
630 2595 2.639286 GACTTTGCAGTGCACCGG 59.361 61.111 19.58 13.02 38.71 5.28
640 2605 6.017109 TGAGACACTTATTTTGAGGACTTTGC 60.017 38.462 0.00 0.00 0.00 3.68
649 2614 9.959749 GGTACAAAATTGAGACACTTATTTTGA 57.040 29.630 23.24 13.43 44.64 2.69
732 2697 9.293404 GGGGCGACAATATACAGATATATACTA 57.707 37.037 0.00 0.00 33.56 1.82
733 2698 7.783119 TGGGGCGACAATATACAGATATATACT 59.217 37.037 0.00 0.00 33.56 2.12
734 2699 7.948357 TGGGGCGACAATATACAGATATATAC 58.052 38.462 0.00 0.00 33.56 1.47
735 2700 8.541899 TTGGGGCGACAATATACAGATATATA 57.458 34.615 0.00 0.00 33.56 0.86
736 2701 7.432148 TTGGGGCGACAATATACAGATATAT 57.568 36.000 0.00 0.00 35.80 0.86
742 2707 1.873591 GCTTGGGGCGACAATATACAG 59.126 52.381 0.00 0.00 0.00 2.74
744 2709 1.235724 GGCTTGGGGCGACAATATAC 58.764 55.000 0.00 0.00 42.94 1.47
755 2720 2.301346 CTGTATAAAGCTGGCTTGGGG 58.699 52.381 8.66 0.00 36.26 4.96
768 2733 5.632244 TGACGACAACTGTAGCTGTATAA 57.368 39.130 0.00 0.00 0.00 0.98
773 2738 1.457303 GCTTGACGACAACTGTAGCTG 59.543 52.381 0.00 0.00 32.27 4.24
799 2764 4.901250 ACCAACCAAAGGAATCTGTTCATT 59.099 37.500 0.00 0.00 39.80 2.57
802 2767 4.145052 AGACCAACCAAAGGAATCTGTTC 58.855 43.478 0.00 0.00 0.00 3.18
804 2769 3.884037 AGACCAACCAAAGGAATCTGT 57.116 42.857 0.00 0.00 0.00 3.41
805 2770 3.684788 CGTAGACCAACCAAAGGAATCTG 59.315 47.826 0.00 0.00 0.00 2.90
806 2771 3.326880 ACGTAGACCAACCAAAGGAATCT 59.673 43.478 0.00 0.00 0.00 2.40
807 2772 3.435671 CACGTAGACCAACCAAAGGAATC 59.564 47.826 0.00 0.00 0.00 2.52
808 2773 3.181448 ACACGTAGACCAACCAAAGGAAT 60.181 43.478 0.00 0.00 0.00 3.01
809 2774 2.171027 ACACGTAGACCAACCAAAGGAA 59.829 45.455 0.00 0.00 0.00 3.36
810 2775 1.764134 ACACGTAGACCAACCAAAGGA 59.236 47.619 0.00 0.00 0.00 3.36
811 2776 1.871039 CACACGTAGACCAACCAAAGG 59.129 52.381 0.00 0.00 0.00 3.11
812 2777 2.828877 TCACACGTAGACCAACCAAAG 58.171 47.619 0.00 0.00 0.00 2.77
813 2778 2.983907 TCACACGTAGACCAACCAAA 57.016 45.000 0.00 0.00 0.00 3.28
814 2779 2.828877 CTTCACACGTAGACCAACCAA 58.171 47.619 0.00 0.00 0.00 3.67
815 2780 1.539496 GCTTCACACGTAGACCAACCA 60.539 52.381 0.00 0.00 0.00 3.67
816 2781 1.145803 GCTTCACACGTAGACCAACC 58.854 55.000 0.00 0.00 0.00 3.77
817 2782 1.525619 GTGCTTCACACGTAGACCAAC 59.474 52.381 0.00 0.00 40.07 3.77
818 2783 1.860676 GTGCTTCACACGTAGACCAA 58.139 50.000 0.00 0.00 40.07 3.67
819 2784 3.580904 GTGCTTCACACGTAGACCA 57.419 52.632 0.00 0.00 40.07 4.02
855 2820 2.582498 GAGGGCGTCGTCCGATTG 60.582 66.667 10.84 0.00 39.56 2.67
856 2821 4.189188 CGAGGGCGTCGTCCGATT 62.189 66.667 20.45 0.00 44.20 3.34
866 2831 4.246206 CATGCATGCACGAGGGCG 62.246 66.667 25.37 1.67 44.79 6.13
892 2868 1.673168 GTGACCTGGATTGGATCTGC 58.327 55.000 0.00 0.00 0.00 4.26
893 2869 1.945387 CGTGACCTGGATTGGATCTG 58.055 55.000 0.00 0.00 0.00 2.90
904 2880 3.434319 GCATGTGGGCGTGACCTG 61.434 66.667 0.00 0.00 39.10 4.00
907 2883 2.690778 GGAAGCATGTGGGCGTGAC 61.691 63.158 0.00 0.00 39.27 3.67
958 2950 1.627834 AGAGGGGAGAGCACAAGAAAG 59.372 52.381 0.00 0.00 0.00 2.62
960 2952 1.203237 AGAGAGGGGAGAGCACAAGAA 60.203 52.381 0.00 0.00 0.00 2.52
961 2953 0.411452 AGAGAGGGGAGAGCACAAGA 59.589 55.000 0.00 0.00 0.00 3.02
973 2965 1.034838 CCGACAGAGGTGAGAGAGGG 61.035 65.000 0.00 0.00 0.00 4.30
978 2970 0.322636 GAGTCCCGACAGAGGTGAGA 60.323 60.000 0.00 0.00 0.00 3.27
979 2971 1.316706 GGAGTCCCGACAGAGGTGAG 61.317 65.000 0.00 0.00 0.00 3.51
982 2974 2.037527 GGGAGTCCCGACAGAGGT 59.962 66.667 13.89 0.00 32.13 3.85
983 2975 2.760385 GGGGAGTCCCGACAGAGG 60.760 72.222 22.38 0.00 46.66 3.69
1012 3006 0.113190 CCTAAAGGGATGGGATGCCC 59.887 60.000 0.00 0.00 42.53 5.36
1026 3020 4.261801 GACTAGCTTGGTTGATGCCTAAA 58.738 43.478 0.00 0.00 0.00 1.85
1044 3052 4.822350 AGACTGAATATGTAGCAGCGACTA 59.178 41.667 7.22 0.00 33.03 2.59
1049 3057 4.333649 TGCAAAGACTGAATATGTAGCAGC 59.666 41.667 0.00 0.00 33.03 5.25
1094 3106 2.357836 CTGGGGCCTCATGCTTGT 59.642 61.111 5.29 0.00 40.92 3.16
1191 3203 1.671261 CGAGGAGCAGAACAAGTGGAG 60.671 57.143 0.00 0.00 0.00 3.86
1204 3233 1.062880 CAGACTTACTCGACGAGGAGC 59.937 57.143 27.39 18.28 37.57 4.70
1223 3252 4.456566 TGTCAATACGACTACTGCTACACA 59.543 41.667 0.00 0.00 45.60 3.72
1233 3263 3.936453 GCCAACCAATGTCAATACGACTA 59.064 43.478 0.00 0.00 45.60 2.59
1234 3264 2.747446 GCCAACCAATGTCAATACGACT 59.253 45.455 0.00 0.00 45.60 4.18
1235 3265 2.747446 AGCCAACCAATGTCAATACGAC 59.253 45.455 0.00 0.00 45.61 4.34
1236 3266 2.746904 CAGCCAACCAATGTCAATACGA 59.253 45.455 0.00 0.00 0.00 3.43
1237 3267 2.731968 GCAGCCAACCAATGTCAATACG 60.732 50.000 0.00 0.00 0.00 3.06
1238 3268 2.417243 GGCAGCCAACCAATGTCAATAC 60.417 50.000 6.55 0.00 0.00 1.89
1295 3342 2.224159 GGGAAGGACCTGGTGCAGA 61.224 63.158 20.87 0.00 38.98 4.26
1325 3372 0.250209 AGGCGAGATGTCCATGCATC 60.250 55.000 0.00 5.44 44.02 3.91
1419 3472 2.807967 CTCGCAGAAGTTGGTGATGAAA 59.192 45.455 0.00 0.00 34.09 2.69
1420 3473 2.037121 TCTCGCAGAAGTTGGTGATGAA 59.963 45.455 0.00 0.00 34.09 2.57
1421 3474 1.618343 TCTCGCAGAAGTTGGTGATGA 59.382 47.619 0.00 0.00 34.09 2.92
1426 3479 1.371558 GGGTCTCGCAGAAGTTGGT 59.628 57.895 0.00 0.00 34.09 3.67
1438 3491 1.153549 CCTTAGTGCAGCGGGTCTC 60.154 63.158 0.00 0.00 0.00 3.36
1479 3542 2.140717 GCTAATCGGGGTTATTCGGTG 58.859 52.381 0.00 0.00 0.00 4.94
1480 3543 1.071228 GGCTAATCGGGGTTATTCGGT 59.929 52.381 0.00 0.00 0.00 4.69
1489 3552 1.834188 AAAACACAGGCTAATCGGGG 58.166 50.000 0.00 0.00 0.00 5.73
1490 3553 2.163613 GGAAAAACACAGGCTAATCGGG 59.836 50.000 0.00 0.00 0.00 5.14
1523 3592 6.579666 TCAAGATGCAACTCTTAAATGCTT 57.420 33.333 2.30 0.00 40.66 3.91
1526 3595 7.148120 ACCAGATCAAGATGCAACTCTTAAATG 60.148 37.037 2.30 0.00 33.73 2.32
1561 8330 5.633830 TGCATTGAACTCTCATTTCTTCC 57.366 39.130 0.00 0.00 0.00 3.46
1586 8355 4.073293 AGACACAAGAAGGAACAACGAT 57.927 40.909 0.00 0.00 0.00 3.73
1671 8444 7.473735 TCCATTCCATGCTTATGTGTTTTAA 57.526 32.000 0.00 0.00 0.00 1.52
1683 8456 5.647230 TCATATTCCATTCCATTCCATGCT 58.353 37.500 0.00 0.00 0.00 3.79
1748 8528 3.244976 GGTGCTTTGTACATGAATGCAC 58.755 45.455 20.58 20.58 46.22 4.57
1772 8556 9.258629 TGGATTTAAATTTGACATCTCTCCATT 57.741 29.630 1.43 0.00 0.00 3.16
1865 8667 8.433421 TTCGTTGGATTTTAATAGATCTGGAC 57.567 34.615 5.18 0.00 0.00 4.02
1923 8725 9.826574 ACATTCTTAGTGTGAAACTTTAGTGTA 57.173 29.630 0.00 0.00 40.56 2.90
1936 8738 5.177511 ACACGATGTTGACATTCTTAGTGTG 59.822 40.000 15.33 10.64 36.57 3.82
1977 8780 5.930837 ACAAAACTCACCCTTCATTTCAA 57.069 34.783 0.00 0.00 0.00 2.69
1993 8797 8.021396 CCTAACAAGCTAAACCATCTACAAAAC 58.979 37.037 0.00 0.00 0.00 2.43
2031 8841 3.679980 CGTACAGACTTGTAAGCTGCAAT 59.320 43.478 1.02 0.00 41.25 3.56
2038 8848 1.693467 TGCGCGTACAGACTTGTAAG 58.307 50.000 8.43 0.00 41.25 2.34
2040 8850 1.001048 ACTTGCGCGTACAGACTTGTA 60.001 47.619 8.43 0.00 38.76 2.41
2049 8860 0.096454 GGGATTTCACTTGCGCGTAC 59.904 55.000 8.43 0.00 0.00 3.67
2052 8863 2.485122 GGGGATTTCACTTGCGCG 59.515 61.111 0.00 0.00 0.00 6.86
2067 8878 5.071923 TGGGTTTAAATTTACTGTTTGGGGG 59.928 40.000 0.00 0.00 0.00 5.40
2123 8942 4.514441 GGCAGATCACCTAAACATGAGATG 59.486 45.833 0.00 0.00 0.00 2.90
2184 9003 6.981559 GGTCAATACACAAAAACCTGCTAAAA 59.018 34.615 0.00 0.00 0.00 1.52
2196 9016 4.200874 ACCAACGAAGGTCAATACACAAA 58.799 39.130 0.00 0.00 37.28 2.83
2228 9048 3.853330 CGGAGCACAACATCGCGG 61.853 66.667 6.13 0.00 0.00 6.46
2350 9170 1.156736 GGTCACAACAGGTCCAATCG 58.843 55.000 0.00 0.00 0.00 3.34
2367 9187 4.357918 AGCTAATCTGCATTATTCGGGT 57.642 40.909 0.00 0.00 34.99 5.28
2393 9213 8.953368 ATGACTGCAGAAAAAGAAAAGAAAAT 57.047 26.923 23.35 0.00 0.00 1.82
2398 9218 6.275335 TGGAATGACTGCAGAAAAAGAAAAG 58.725 36.000 23.35 0.00 0.00 2.27
2465 9285 3.815809 TCCAACGGAACATCAAACTCTT 58.184 40.909 0.00 0.00 0.00 2.85
2480 9300 1.202927 AGGCCCATCCATAATCCAACG 60.203 52.381 0.00 0.00 37.29 4.10
2484 9304 1.566231 CCCTAGGCCCATCCATAATCC 59.434 57.143 2.05 0.00 37.29 3.01
2485 9305 1.064389 GCCCTAGGCCCATCCATAATC 60.064 57.143 2.05 0.00 44.06 1.75
2486 9306 1.002857 GCCCTAGGCCCATCCATAAT 58.997 55.000 2.05 0.00 44.06 1.28
2487 9307 2.474924 GCCCTAGGCCCATCCATAA 58.525 57.895 2.05 0.00 44.06 1.90
2488 9308 4.250699 GCCCTAGGCCCATCCATA 57.749 61.111 2.05 0.00 44.06 2.74
2526 9346 8.450180 CACCCACATATGCCTTTTAAATTTTTC 58.550 33.333 1.58 0.00 0.00 2.29
2530 9350 6.212388 TGACACCCACATATGCCTTTTAAATT 59.788 34.615 1.58 0.00 0.00 1.82
2531 9351 5.719085 TGACACCCACATATGCCTTTTAAAT 59.281 36.000 1.58 0.00 0.00 1.40
2534 9354 4.308526 TGACACCCACATATGCCTTTTA 57.691 40.909 1.58 0.00 0.00 1.52
2541 9362 6.569035 GCACAATATCATGACACCCACATATG 60.569 42.308 0.00 0.00 0.00 1.78
2542 9363 5.474532 GCACAATATCATGACACCCACATAT 59.525 40.000 0.00 0.00 0.00 1.78
2559 9380 3.754965 ACTCCTTTTCTGCAGCACAATA 58.245 40.909 9.47 0.00 0.00 1.90
2562 9383 2.771089 CTACTCCTTTTCTGCAGCACA 58.229 47.619 9.47 0.00 0.00 4.57
2569 9390 1.710339 GCGCGCTACTCCTTTTCTG 59.290 57.895 26.67 0.00 0.00 3.02
2584 9487 4.649954 GTCTGTGTGTGTGCGCGC 62.650 66.667 27.26 27.26 36.27 6.86
2586 9489 2.894879 TGGTCTGTGTGTGTGCGC 60.895 61.111 0.00 0.00 0.00 6.09
2588 9491 1.024046 TGTGTGGTCTGTGTGTGTGC 61.024 55.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.