Multiple sequence alignment - TraesCS1B01G025300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G025300 chr1B 100.000 2243 0 0 1 2243 12374717 12372475 0.000000e+00 4143.0
1 TraesCS1B01G025300 chr1B 91.047 1251 89 14 177 1411 12499732 12500975 0.000000e+00 1668.0
2 TraesCS1B01G025300 chr1B 91.047 1251 89 14 177 1411 12569923 12571166 0.000000e+00 1668.0
3 TraesCS1B01G025300 chr1B 89.049 1251 105 18 177 1414 13013258 13014489 0.000000e+00 1522.0
4 TraesCS1B01G025300 chr1B 88.720 1250 111 16 177 1414 13500669 13501900 0.000000e+00 1500.0
5 TraesCS1B01G025300 chr1B 94.167 120 6 1 1293 1411 12572404 12572523 4.920000e-42 182.0
6 TraesCS1B01G025300 chr1A 87.039 1057 118 8 372 1414 10708868 10709919 0.000000e+00 1175.0
7 TraesCS1B01G025300 chr1D 86.969 706 77 9 711 1414 9418006 9418698 0.000000e+00 780.0
8 TraesCS1B01G025300 chr1D 87.697 634 73 4 1412 2042 9418726 9419357 0.000000e+00 734.0
9 TraesCS1B01G025300 chr1D 81.726 591 94 10 1450 2032 9432959 9433543 4.330000e-132 481.0
10 TraesCS1B01G025300 chr1D 86.420 243 26 4 417 658 9414626 9414862 2.210000e-65 259.0
11 TraesCS1B01G025300 chr2D 85.000 60 7 2 1613 1671 617044395 617044337 2.410000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G025300 chr1B 12372475 12374717 2242 True 4143 4143 100.000000 1 2243 1 chr1B.!!$R1 2242
1 TraesCS1B01G025300 chr1B 12499732 12500975 1243 False 1668 1668 91.047000 177 1411 1 chr1B.!!$F1 1234
2 TraesCS1B01G025300 chr1B 13013258 13014489 1231 False 1522 1522 89.049000 177 1414 1 chr1B.!!$F2 1237
3 TraesCS1B01G025300 chr1B 13500669 13501900 1231 False 1500 1500 88.720000 177 1414 1 chr1B.!!$F3 1237
4 TraesCS1B01G025300 chr1B 12569923 12572523 2600 False 925 1668 92.607000 177 1411 2 chr1B.!!$F4 1234
5 TraesCS1B01G025300 chr1A 10708868 10709919 1051 False 1175 1175 87.039000 372 1414 1 chr1A.!!$F1 1042
6 TraesCS1B01G025300 chr1D 9414626 9419357 4731 False 591 780 87.028667 417 2042 3 chr1D.!!$F2 1625
7 TraesCS1B01G025300 chr1D 9432959 9433543 584 False 481 481 81.726000 1450 2032 1 chr1D.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.036765 AAAGTGAGGCGCCATTCGTA 60.037 50.0 31.54 4.58 41.07 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 6551 0.031043 TACCAATATCGGTGCGGACG 59.969 55.0 0.0 0.0 40.39 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.327982 CATATGGACCACGATCTGAGTT 57.672 45.455 0.00 0.00 0.00 3.01
22 23 4.697514 CATATGGACCACGATCTGAGTTT 58.302 43.478 0.00 0.00 0.00 2.66
23 24 2.455674 TGGACCACGATCTGAGTTTG 57.544 50.000 0.00 0.00 0.00 2.93
24 25 1.691976 TGGACCACGATCTGAGTTTGT 59.308 47.619 0.00 0.00 0.00 2.83
25 26 2.104111 TGGACCACGATCTGAGTTTGTT 59.896 45.455 0.00 0.00 0.00 2.83
26 27 2.737252 GGACCACGATCTGAGTTTGTTC 59.263 50.000 0.00 0.00 0.00 3.18
27 28 2.404215 ACCACGATCTGAGTTTGTTCG 58.596 47.619 0.00 0.00 35.99 3.95
28 29 1.726791 CCACGATCTGAGTTTGTTCGG 59.273 52.381 0.00 0.00 34.28 4.30
29 30 2.609491 CCACGATCTGAGTTTGTTCGGA 60.609 50.000 0.00 0.00 36.92 4.55
30 31 2.663602 CACGATCTGAGTTTGTTCGGAG 59.336 50.000 0.00 0.00 36.01 4.63
31 32 1.656095 CGATCTGAGTTTGTTCGGAGC 59.344 52.381 0.00 0.00 36.01 4.70
32 33 2.672478 CGATCTGAGTTTGTTCGGAGCT 60.672 50.000 0.00 0.00 36.87 4.09
33 34 3.427638 CGATCTGAGTTTGTTCGGAGCTA 60.428 47.826 0.00 0.00 36.87 3.32
34 35 3.299340 TCTGAGTTTGTTCGGAGCTAC 57.701 47.619 0.00 0.00 0.00 3.58
35 36 1.986378 CTGAGTTTGTTCGGAGCTACG 59.014 52.381 13.63 13.63 0.00 3.51
36 37 1.336517 TGAGTTTGTTCGGAGCTACGG 60.337 52.381 20.39 0.00 0.00 4.02
37 38 0.677842 AGTTTGTTCGGAGCTACGGT 59.322 50.000 20.39 0.00 0.00 4.83
38 39 1.888512 AGTTTGTTCGGAGCTACGGTA 59.111 47.619 20.39 3.96 0.00 4.02
39 40 2.494870 AGTTTGTTCGGAGCTACGGTAT 59.505 45.455 20.39 0.00 0.00 2.73
40 41 2.572191 TTGTTCGGAGCTACGGTATG 57.428 50.000 20.39 0.00 0.00 2.39
41 42 1.466856 TGTTCGGAGCTACGGTATGT 58.533 50.000 20.39 0.00 0.00 2.29
42 43 1.133598 TGTTCGGAGCTACGGTATGTG 59.866 52.381 20.39 0.00 0.00 3.21
43 44 0.101759 TTCGGAGCTACGGTATGTGC 59.898 55.000 20.39 0.00 0.00 4.57
44 45 1.299926 CGGAGCTACGGTATGTGCC 60.300 63.158 11.59 0.00 0.00 5.01
45 46 1.069258 GGAGCTACGGTATGTGCCC 59.931 63.158 0.00 0.00 0.00 5.36
51 52 2.901813 CGGTATGTGCCCGGGTTA 59.098 61.111 24.63 9.20 41.78 2.85
52 53 1.221293 CGGTATGTGCCCGGGTTAA 59.779 57.895 24.63 8.10 41.78 2.01
53 54 0.812412 CGGTATGTGCCCGGGTTAAG 60.812 60.000 24.63 1.87 41.78 1.85
54 55 0.542805 GGTATGTGCCCGGGTTAAGA 59.457 55.000 24.63 7.35 0.00 2.10
55 56 1.065272 GGTATGTGCCCGGGTTAAGAA 60.065 52.381 24.63 2.36 0.00 2.52
56 57 2.618559 GGTATGTGCCCGGGTTAAGAAA 60.619 50.000 24.63 1.16 0.00 2.52
57 58 2.296073 ATGTGCCCGGGTTAAGAAAA 57.704 45.000 24.63 0.00 0.00 2.29
58 59 1.611519 TGTGCCCGGGTTAAGAAAAG 58.388 50.000 24.63 0.00 0.00 2.27
59 60 1.133730 TGTGCCCGGGTTAAGAAAAGT 60.134 47.619 24.63 0.00 0.00 2.66
60 61 1.268625 GTGCCCGGGTTAAGAAAAGTG 59.731 52.381 24.63 0.00 0.00 3.16
61 62 1.143277 TGCCCGGGTTAAGAAAAGTGA 59.857 47.619 24.63 0.00 0.00 3.41
62 63 1.810755 GCCCGGGTTAAGAAAAGTGAG 59.189 52.381 24.63 0.00 0.00 3.51
63 64 2.433436 CCCGGGTTAAGAAAAGTGAGG 58.567 52.381 14.18 0.00 0.00 3.86
64 65 1.810755 CCGGGTTAAGAAAAGTGAGGC 59.189 52.381 0.00 0.00 0.00 4.70
65 66 1.463444 CGGGTTAAGAAAAGTGAGGCG 59.537 52.381 0.00 0.00 0.00 5.52
66 67 1.199327 GGGTTAAGAAAAGTGAGGCGC 59.801 52.381 0.00 0.00 0.00 6.53
67 68 1.199327 GGTTAAGAAAAGTGAGGCGCC 59.801 52.381 21.89 21.89 0.00 6.53
68 69 1.877443 GTTAAGAAAAGTGAGGCGCCA 59.123 47.619 31.54 5.56 0.00 5.69
69 70 2.488153 GTTAAGAAAAGTGAGGCGCCAT 59.512 45.455 31.54 14.28 0.00 4.40
70 71 1.620822 AAGAAAAGTGAGGCGCCATT 58.379 45.000 31.54 14.78 0.00 3.16
71 72 1.168714 AGAAAAGTGAGGCGCCATTC 58.831 50.000 31.54 19.45 0.00 2.67
72 73 0.179189 GAAAAGTGAGGCGCCATTCG 60.179 55.000 31.54 0.00 42.12 3.34
73 74 0.889186 AAAAGTGAGGCGCCATTCGT 60.889 50.000 31.54 7.13 41.07 3.85
74 75 0.036765 AAAGTGAGGCGCCATTCGTA 60.037 50.000 31.54 4.58 41.07 3.43
75 76 0.460284 AAGTGAGGCGCCATTCGTAG 60.460 55.000 31.54 0.00 41.07 3.51
76 77 1.883084 GTGAGGCGCCATTCGTAGG 60.883 63.158 31.54 0.00 41.07 3.18
87 88 2.571757 TCGTAGGCGAGGCAGTTG 59.428 61.111 0.00 0.00 42.81 3.16
88 89 2.261671 CGTAGGCGAGGCAGTTGT 59.738 61.111 0.00 0.00 41.33 3.32
89 90 1.805945 CGTAGGCGAGGCAGTTGTC 60.806 63.158 0.00 0.00 41.33 3.18
90 91 1.805945 GTAGGCGAGGCAGTTGTCG 60.806 63.158 0.00 0.00 39.25 4.35
97 98 2.975799 GGCAGTTGTCGCCGGAAA 60.976 61.111 5.05 0.00 40.35 3.13
98 99 2.548295 GGCAGTTGTCGCCGGAAAA 61.548 57.895 5.05 0.00 40.35 2.29
99 100 1.357334 GCAGTTGTCGCCGGAAAAA 59.643 52.632 5.05 0.00 0.00 1.94
118 119 4.439253 AAAATATAGTGCCCACCTCTCC 57.561 45.455 0.00 0.00 0.00 3.71
119 120 3.352611 AATATAGTGCCCACCTCTCCT 57.647 47.619 0.00 0.00 0.00 3.69
120 121 2.868964 TATAGTGCCCACCTCTCCTT 57.131 50.000 0.00 0.00 0.00 3.36
121 122 1.501582 ATAGTGCCCACCTCTCCTTC 58.498 55.000 0.00 0.00 0.00 3.46
122 123 0.617820 TAGTGCCCACCTCTCCTTCC 60.618 60.000 0.00 0.00 0.00 3.46
123 124 2.206900 TGCCCACCTCTCCTTCCA 59.793 61.111 0.00 0.00 0.00 3.53
124 125 2.224159 TGCCCACCTCTCCTTCCAC 61.224 63.158 0.00 0.00 0.00 4.02
125 126 2.972819 GCCCACCTCTCCTTCCACC 61.973 68.421 0.00 0.00 0.00 4.61
126 127 1.229658 CCCACCTCTCCTTCCACCT 60.230 63.158 0.00 0.00 0.00 4.00
127 128 1.268283 CCCACCTCTCCTTCCACCTC 61.268 65.000 0.00 0.00 0.00 3.85
128 129 1.268283 CCACCTCTCCTTCCACCTCC 61.268 65.000 0.00 0.00 0.00 4.30
129 130 1.305381 ACCTCTCCTTCCACCTCCG 60.305 63.158 0.00 0.00 0.00 4.63
130 131 1.305381 CCTCTCCTTCCACCTCCGT 60.305 63.158 0.00 0.00 0.00 4.69
131 132 1.324005 CCTCTCCTTCCACCTCCGTC 61.324 65.000 0.00 0.00 0.00 4.79
132 133 1.305046 TCTCCTTCCACCTCCGTCC 60.305 63.158 0.00 0.00 0.00 4.79
133 134 2.678934 TCCTTCCACCTCCGTCCG 60.679 66.667 0.00 0.00 0.00 4.79
134 135 2.678934 CCTTCCACCTCCGTCCGA 60.679 66.667 0.00 0.00 0.00 4.55
135 136 2.711922 CCTTCCACCTCCGTCCGAG 61.712 68.421 0.00 0.00 38.46 4.63
136 137 3.358076 CTTCCACCTCCGTCCGAGC 62.358 68.421 0.00 0.00 37.27 5.03
137 138 3.881019 TTCCACCTCCGTCCGAGCT 62.881 63.158 0.00 0.00 37.27 4.09
138 139 2.439701 CCACCTCCGTCCGAGCTA 60.440 66.667 0.00 0.00 37.27 3.32
139 140 2.482333 CCACCTCCGTCCGAGCTAG 61.482 68.421 0.00 0.00 37.27 3.42
140 141 1.749638 CACCTCCGTCCGAGCTAGT 60.750 63.158 0.00 0.00 37.27 2.57
141 142 1.749638 ACCTCCGTCCGAGCTAGTG 60.750 63.158 0.00 0.00 37.27 2.74
142 143 2.409651 CTCCGTCCGAGCTAGTGC 59.590 66.667 0.00 0.00 40.05 4.40
143 144 3.456431 CTCCGTCCGAGCTAGTGCG 62.456 68.421 0.00 0.00 45.42 5.34
144 145 3.506096 CCGTCCGAGCTAGTGCGA 61.506 66.667 7.76 0.00 45.42 5.10
145 146 2.023461 CGTCCGAGCTAGTGCGAG 59.977 66.667 7.76 0.08 45.42 5.03
146 147 2.461945 CGTCCGAGCTAGTGCGAGA 61.462 63.158 7.76 2.08 45.42 4.04
147 148 1.353804 GTCCGAGCTAGTGCGAGAG 59.646 63.158 7.76 0.00 45.42 3.20
148 149 1.090625 GTCCGAGCTAGTGCGAGAGA 61.091 60.000 7.76 0.00 45.42 3.10
149 150 0.179043 TCCGAGCTAGTGCGAGAGAT 60.179 55.000 7.76 0.00 45.42 2.75
150 151 1.070289 TCCGAGCTAGTGCGAGAGATA 59.930 52.381 7.76 0.00 45.42 1.98
151 152 2.080693 CCGAGCTAGTGCGAGAGATAT 58.919 52.381 7.76 0.00 45.42 1.63
152 153 2.159585 CCGAGCTAGTGCGAGAGATATG 60.160 54.545 7.76 0.00 45.42 1.78
153 154 2.159585 CGAGCTAGTGCGAGAGATATGG 60.160 54.545 0.00 0.00 45.42 2.74
154 155 2.817258 GAGCTAGTGCGAGAGATATGGT 59.183 50.000 0.00 0.00 45.42 3.55
155 156 3.226777 AGCTAGTGCGAGAGATATGGTT 58.773 45.455 0.00 0.00 45.42 3.67
156 157 3.254657 AGCTAGTGCGAGAGATATGGTTC 59.745 47.826 0.00 0.00 45.42 3.62
157 158 3.004839 GCTAGTGCGAGAGATATGGTTCA 59.995 47.826 0.00 0.00 0.00 3.18
158 159 4.321601 GCTAGTGCGAGAGATATGGTTCAT 60.322 45.833 0.00 0.00 0.00 2.57
159 160 4.250116 AGTGCGAGAGATATGGTTCATC 57.750 45.455 0.00 0.00 0.00 2.92
160 161 3.638627 AGTGCGAGAGATATGGTTCATCA 59.361 43.478 0.00 0.00 0.00 3.07
161 162 3.986572 GTGCGAGAGATATGGTTCATCAG 59.013 47.826 0.00 0.00 0.00 2.90
162 163 3.006217 TGCGAGAGATATGGTTCATCAGG 59.994 47.826 0.00 0.00 0.00 3.86
163 164 3.616076 GCGAGAGATATGGTTCATCAGGG 60.616 52.174 0.00 0.00 0.00 4.45
164 165 3.576118 CGAGAGATATGGTTCATCAGGGT 59.424 47.826 0.00 0.00 0.00 4.34
165 166 4.039730 CGAGAGATATGGTTCATCAGGGTT 59.960 45.833 0.00 0.00 0.00 4.11
166 167 5.453903 CGAGAGATATGGTTCATCAGGGTTT 60.454 44.000 0.00 0.00 0.00 3.27
167 168 5.688807 AGAGATATGGTTCATCAGGGTTTG 58.311 41.667 0.00 0.00 0.00 2.93
168 169 5.192522 AGAGATATGGTTCATCAGGGTTTGT 59.807 40.000 0.00 0.00 0.00 2.83
169 170 5.440610 AGATATGGTTCATCAGGGTTTGTC 58.559 41.667 0.00 0.00 0.00 3.18
170 171 2.286365 TGGTTCATCAGGGTTTGTCC 57.714 50.000 0.00 0.00 0.00 4.02
171 172 1.780309 TGGTTCATCAGGGTTTGTCCT 59.220 47.619 0.00 0.00 37.71 3.85
172 173 2.983192 TGGTTCATCAGGGTTTGTCCTA 59.017 45.455 0.00 0.00 34.92 2.94
173 174 3.396276 TGGTTCATCAGGGTTTGTCCTAA 59.604 43.478 0.00 0.00 34.92 2.69
174 175 3.756963 GGTTCATCAGGGTTTGTCCTAAC 59.243 47.826 0.00 0.00 34.92 2.34
175 176 4.394729 GTTCATCAGGGTTTGTCCTAACA 58.605 43.478 0.00 0.00 34.92 2.41
213 214 1.925455 CCATCAGGGGTCCACCAGT 60.925 63.158 0.00 0.00 42.91 4.00
214 215 1.604378 CATCAGGGGTCCACCAGTC 59.396 63.158 0.00 0.00 42.91 3.51
221 222 1.633945 GGGGTCCACCAGTCTTAACAT 59.366 52.381 0.00 0.00 42.91 2.71
224 225 4.451900 GGGTCCACCAGTCTTAACATATG 58.548 47.826 0.00 0.00 39.85 1.78
228 229 4.163458 TCCACCAGTCTTAACATATGGGAC 59.837 45.833 7.80 9.41 35.26 4.46
237 238 1.342672 ACATATGGGACGGTCCACCC 61.343 60.000 27.32 12.65 45.74 4.61
250 251 0.836830 TCCACCCGGTCCAACACATA 60.837 55.000 0.00 0.00 0.00 2.29
272 273 8.489489 ACATAAGACCAGAGTATCATGACAATT 58.511 33.333 0.00 0.00 37.82 2.32
285 286 2.778299 TGACAATTCCTACTGCACCAC 58.222 47.619 0.00 0.00 0.00 4.16
286 287 2.084546 GACAATTCCTACTGCACCACC 58.915 52.381 0.00 0.00 0.00 4.61
305 306 0.249120 CAATGCCTCCCACGACTACA 59.751 55.000 0.00 0.00 0.00 2.74
311 312 1.254026 CTCCCACGACTACAACCTCA 58.746 55.000 0.00 0.00 0.00 3.86
338 339 1.070134 TCACGGCTAAAACTGCAGACT 59.930 47.619 23.35 3.66 0.00 3.24
346 347 0.320771 AAACTGCAGACTAGCACCGG 60.321 55.000 23.35 0.00 40.11 5.28
351 352 1.035932 GCAGACTAGCACCGGGTCTA 61.036 60.000 6.32 5.54 38.12 2.59
356 357 3.305619 TAGCACCGGGTCTAGGCCA 62.306 63.158 16.93 0.00 0.00 5.36
357 358 4.162690 GCACCGGGTCTAGGCCAG 62.163 72.222 16.93 11.70 0.00 4.85
360 361 1.076192 ACCGGGTCTAGGCCAGTAG 60.076 63.158 16.93 1.72 0.00 2.57
361 362 2.499827 CCGGGTCTAGGCCAGTAGC 61.500 68.421 16.93 0.00 42.60 3.58
375 376 0.983378 AGTAGCCCTGTCCACCATCC 60.983 60.000 0.00 0.00 0.00 3.51
398 399 1.276421 AGATGTCGTTCTGGACCCAAG 59.724 52.381 0.00 0.00 36.07 3.61
415 416 2.290705 CCAAGGAATCAACCTTACCCGT 60.291 50.000 0.00 0.00 46.94 5.28
418 419 1.407851 GGAATCAACCTTACCCGTCCC 60.408 57.143 0.00 0.00 0.00 4.46
456 457 4.779113 AGGCCACGACCTTAGCTA 57.221 55.556 5.01 0.00 36.28 3.32
480 481 5.615925 AATCTTCCCTAAATAGCTCACGT 57.384 39.130 0.00 0.00 0.00 4.49
499 500 5.353123 TCACGTGTAAATCCTGAAATAAGCC 59.647 40.000 16.51 0.00 0.00 4.35
511 512 5.642063 CCTGAAATAAGCCGAAAGAAGTACA 59.358 40.000 0.00 0.00 0.00 2.90
525 526 9.907576 CGAAAGAAGTACAAATGTTGATCTATC 57.092 33.333 0.00 0.00 0.00 2.08
554 555 7.983166 ACCTATTGGTATCACCTGTTACTAA 57.017 36.000 0.00 0.00 46.43 2.24
555 556 8.562949 ACCTATTGGTATCACCTGTTACTAAT 57.437 34.615 0.00 9.02 46.43 1.73
607 612 5.596836 AGAACTCCAAAATTTGAAGTGCA 57.403 34.783 5.87 0.00 0.00 4.57
611 616 1.794116 CCAAAATTTGAAGTGCAGCCG 59.206 47.619 7.37 0.00 0.00 5.52
626 636 3.573967 TGCAGCCGAGATAAGACATGATA 59.426 43.478 0.00 0.00 0.00 2.15
633 643 5.066634 CCGAGATAAGACATGATATAGCGGT 59.933 44.000 0.00 0.00 0.00 5.68
695 2684 3.470709 GCAGCAGCCTTACTTATGATGA 58.529 45.455 0.00 0.00 30.86 2.92
706 2695 8.254508 GCCTTACTTATGATGAGTAGGATAAGG 58.745 40.741 7.87 9.06 34.17 2.69
752 3853 4.979815 CACACAATGCATGCCTATTGTATG 59.020 41.667 26.78 23.82 43.53 2.39
839 3944 0.953727 GCTTGTTGTCATGCTCACCA 59.046 50.000 0.00 0.00 40.22 4.17
984 4094 3.257469 TCTACAATTGGAGCTGCTCAG 57.743 47.619 28.95 16.48 31.08 3.35
1188 4298 4.690719 CACAACCCCTGGCGCGTA 62.691 66.667 8.43 0.00 0.00 4.42
1280 4390 1.072331 CGGGCAGGGCATCTTATTAGT 59.928 52.381 0.00 0.00 0.00 2.24
1298 5766 1.067495 AGTTCCACGCAGAGCTAGTTC 60.067 52.381 0.00 0.00 0.00 3.01
1358 5826 1.179152 CATCCATGCTTGGTCTGCAA 58.821 50.000 17.54 0.00 44.01 4.08
1418 5920 7.775053 AGAAAATAAAGCACATACTTTCCCA 57.225 32.000 0.00 0.00 40.32 4.37
1425 5927 0.390735 ACATACTTTCCCACGTCGGC 60.391 55.000 0.00 0.00 0.00 5.54
1441 5944 0.738389 CGGCGGCTTCCACATTTATT 59.262 50.000 7.61 0.00 0.00 1.40
1552 6055 9.967451 TTATTTGGTATCCTAGTTGTTGATCAA 57.033 29.630 3.38 3.38 0.00 2.57
1559 6062 9.788960 GTATCCTAGTTGTTGATCAATTTTTCC 57.211 33.333 12.12 0.00 38.38 3.13
1562 6065 8.522830 TCCTAGTTGTTGATCAATTTTTCCATC 58.477 33.333 12.12 3.29 38.38 3.51
1588 6092 8.504005 CAACAAGTATAACACTACTGGGAAAAG 58.496 37.037 0.00 0.00 36.04 2.27
1628 6132 7.573710 TCAAATTAGTGGCAGGTATAGTCAAT 58.426 34.615 0.00 0.00 0.00 2.57
1640 6144 1.855295 TAGTCAATCACCCGCCACTA 58.145 50.000 0.00 0.00 0.00 2.74
1659 6163 6.374613 GCCACTACTATTTTGGAAAAGTAGCT 59.625 38.462 7.98 0.00 33.45 3.32
1664 6168 3.726291 TTTTGGAAAAGTAGCTGTGGC 57.274 42.857 0.00 0.00 39.06 5.01
1707 6212 5.300752 CCACTGATCTTTTCACAGTAGTGT 58.699 41.667 0.00 0.00 46.01 3.55
1731 6236 4.510038 GGCAAAATATATGACCTGCCAG 57.490 45.455 16.82 0.00 46.87 4.85
1811 6319 1.111277 GTGCCCACTGGTTTGTCTTT 58.889 50.000 0.00 0.00 0.00 2.52
1819 6327 4.035675 CCACTGGTTTGTCTTTCAAGAGTC 59.964 45.833 0.00 0.00 37.35 3.36
1825 6333 0.038526 GTCTTTCAAGAGTCGCGGGA 60.039 55.000 6.13 0.00 35.32 5.14
1839 6347 3.845625 CGGGAGAAAAATATGCCGC 57.154 52.632 0.00 0.00 43.52 6.53
1840 6348 0.041312 CGGGAGAAAAATATGCCGCG 60.041 55.000 0.00 0.00 43.52 6.46
1841 6349 1.305201 GGGAGAAAAATATGCCGCGA 58.695 50.000 8.23 0.00 0.00 5.87
1842 6350 1.264288 GGGAGAAAAATATGCCGCGAG 59.736 52.381 8.23 0.00 0.00 5.03
1853 6362 3.876274 ATGCCGCGAGATCAATACTAT 57.124 42.857 8.23 0.00 0.00 2.12
1926 6435 3.128589 GCGGTCACCACACATATCAAAAT 59.871 43.478 0.00 0.00 0.00 1.82
1930 6439 6.644592 CGGTCACCACACATATCAAAATTTTT 59.355 34.615 0.00 0.00 0.00 1.94
1934 6443 7.871973 TCACCACACATATCAAAATTTTTCTGG 59.128 33.333 0.00 0.00 0.00 3.86
1936 6445 7.160726 CCACACATATCAAAATTTTTCTGGGT 58.839 34.615 0.00 1.27 0.00 4.51
1938 6447 8.711457 CACACATATCAAAATTTTTCTGGGTTC 58.289 33.333 0.00 0.00 0.00 3.62
1943 6452 4.890581 TCAAAATTTTTCTGGGTTCGGAGA 59.109 37.500 0.00 0.00 0.00 3.71
1954 6463 1.295792 GTTCGGAGATTTATGGCGCA 58.704 50.000 10.83 0.00 35.04 6.09
1958 6467 1.603802 CGGAGATTTATGGCGCACATT 59.396 47.619 10.83 0.00 41.03 2.71
1965 6474 0.175989 TATGGCGCACATTACCACGA 59.824 50.000 10.83 0.00 41.03 4.35
1972 6481 1.376295 ACATTACCACGAACGCCCC 60.376 57.895 0.00 0.00 0.00 5.80
2026 6535 2.807676 ACTCAAATCGGCAAATCCCTT 58.192 42.857 0.00 0.00 0.00 3.95
2035 6544 1.595093 GCAAATCCCTTGTCCCACCG 61.595 60.000 0.00 0.00 37.36 4.94
2038 6547 2.180159 AATCCCTTGTCCCACCGTCG 62.180 60.000 0.00 0.00 0.00 5.12
2039 6548 3.307906 CCCTTGTCCCACCGTCGA 61.308 66.667 0.00 0.00 0.00 4.20
2041 6550 2.048503 CTTGTCCCACCGTCGACC 60.049 66.667 10.58 0.00 0.00 4.79
2042 6551 3.584868 CTTGTCCCACCGTCGACCC 62.585 68.421 10.58 0.00 0.00 4.46
2055 6564 3.520862 GACCCGTCCGCACCGATA 61.521 66.667 0.00 0.00 0.00 2.92
2056 6565 2.836360 ACCCGTCCGCACCGATAT 60.836 61.111 0.00 0.00 0.00 1.63
2057 6566 2.359570 GACCCGTCCGCACCGATATT 62.360 60.000 0.00 0.00 0.00 1.28
2058 6567 1.954146 CCCGTCCGCACCGATATTG 60.954 63.158 0.00 0.00 0.00 1.90
2059 6568 1.954146 CCGTCCGCACCGATATTGG 60.954 63.158 7.52 7.52 0.00 3.16
2060 6569 1.227147 CGTCCGCACCGATATTGGT 60.227 57.895 9.03 9.03 45.21 3.67
2061 6570 0.031043 CGTCCGCACCGATATTGGTA 59.969 55.000 14.64 0.00 41.38 3.25
2062 6571 1.494824 GTCCGCACCGATATTGGTAC 58.505 55.000 14.64 8.30 41.38 3.34
2063 6572 0.031043 TCCGCACCGATATTGGTACG 59.969 55.000 23.13 23.13 46.14 3.67
2064 6573 0.249155 CCGCACCGATATTGGTACGT 60.249 55.000 26.29 0.00 45.33 3.57
2065 6574 1.126079 CGCACCGATATTGGTACGTC 58.874 55.000 22.15 8.93 42.53 4.34
2066 6575 1.268896 CGCACCGATATTGGTACGTCT 60.269 52.381 22.15 0.00 42.53 4.18
2067 6576 2.391879 GCACCGATATTGGTACGTCTC 58.608 52.381 14.64 0.00 41.38 3.36
2068 6577 2.034305 GCACCGATATTGGTACGTCTCT 59.966 50.000 14.64 0.00 41.38 3.10
2069 6578 3.852572 GCACCGATATTGGTACGTCTCTC 60.853 52.174 14.64 0.00 41.38 3.20
2070 6579 2.883386 ACCGATATTGGTACGTCTCTCC 59.117 50.000 13.42 0.00 41.55 3.71
2071 6580 2.228343 CCGATATTGGTACGTCTCTCCC 59.772 54.545 0.07 0.00 0.00 4.30
2072 6581 3.147629 CGATATTGGTACGTCTCTCCCT 58.852 50.000 0.00 0.00 0.00 4.20
2073 6582 3.188873 CGATATTGGTACGTCTCTCCCTC 59.811 52.174 0.00 0.00 0.00 4.30
2074 6583 2.526888 ATTGGTACGTCTCTCCCTCA 57.473 50.000 0.00 0.00 0.00 3.86
2075 6584 1.542492 TTGGTACGTCTCTCCCTCAC 58.458 55.000 0.00 0.00 0.00 3.51
2076 6585 0.323178 TGGTACGTCTCTCCCTCACC 60.323 60.000 0.00 0.00 0.00 4.02
2077 6586 0.034283 GGTACGTCTCTCCCTCACCT 60.034 60.000 0.00 0.00 0.00 4.00
2078 6587 1.381522 GTACGTCTCTCCCTCACCTC 58.618 60.000 0.00 0.00 0.00 3.85
2079 6588 0.107800 TACGTCTCTCCCTCACCTCG 60.108 60.000 0.00 0.00 0.00 4.63
2080 6589 1.377463 CGTCTCTCCCTCACCTCGT 60.377 63.158 0.00 0.00 0.00 4.18
2081 6590 1.370587 CGTCTCTCCCTCACCTCGTC 61.371 65.000 0.00 0.00 0.00 4.20
2082 6591 1.033202 GTCTCTCCCTCACCTCGTCC 61.033 65.000 0.00 0.00 0.00 4.79
2083 6592 1.755008 CTCTCCCTCACCTCGTCCC 60.755 68.421 0.00 0.00 0.00 4.46
2084 6593 2.760385 CTCCCTCACCTCGTCCCC 60.760 72.222 0.00 0.00 0.00 4.81
2085 6594 4.393778 TCCCTCACCTCGTCCCCC 62.394 72.222 0.00 0.00 0.00 5.40
2086 6595 4.715130 CCCTCACCTCGTCCCCCA 62.715 72.222 0.00 0.00 0.00 4.96
2087 6596 2.365635 CCTCACCTCGTCCCCCAT 60.366 66.667 0.00 0.00 0.00 4.00
2088 6597 1.995626 CCTCACCTCGTCCCCCATT 60.996 63.158 0.00 0.00 0.00 3.16
2089 6598 1.221840 CTCACCTCGTCCCCCATTG 59.778 63.158 0.00 0.00 0.00 2.82
2090 6599 1.229368 TCACCTCGTCCCCCATTGA 60.229 57.895 0.00 0.00 0.00 2.57
2091 6600 1.221840 CACCTCGTCCCCCATTGAG 59.778 63.158 0.00 0.00 0.00 3.02
2092 6601 2.190578 CCTCGTCCCCCATTGAGC 59.809 66.667 0.00 0.00 0.00 4.26
2093 6602 2.370445 CCTCGTCCCCCATTGAGCT 61.370 63.158 0.00 0.00 0.00 4.09
2094 6603 1.153289 CTCGTCCCCCATTGAGCTG 60.153 63.158 0.00 0.00 0.00 4.24
2095 6604 1.903877 CTCGTCCCCCATTGAGCTGT 61.904 60.000 0.00 0.00 0.00 4.40
2096 6605 1.002134 CGTCCCCCATTGAGCTGTT 60.002 57.895 0.00 0.00 0.00 3.16
2097 6606 0.609131 CGTCCCCCATTGAGCTGTTT 60.609 55.000 0.00 0.00 0.00 2.83
2098 6607 0.890683 GTCCCCCATTGAGCTGTTTG 59.109 55.000 0.00 0.00 0.00 2.93
2099 6608 0.899717 TCCCCCATTGAGCTGTTTGC 60.900 55.000 0.00 0.00 43.29 3.68
2100 6609 1.593265 CCCCATTGAGCTGTTTGCC 59.407 57.895 0.00 0.00 44.23 4.52
2101 6610 1.213537 CCCATTGAGCTGTTTGCCG 59.786 57.895 0.00 0.00 44.23 5.69
2102 6611 1.444895 CCATTGAGCTGTTTGCCGC 60.445 57.895 0.00 0.00 44.23 6.53
2103 6612 1.286570 CATTGAGCTGTTTGCCGCA 59.713 52.632 0.00 0.00 44.23 5.69
2104 6613 0.318869 CATTGAGCTGTTTGCCGCAA 60.319 50.000 0.38 0.38 44.23 4.85
2105 6614 0.318955 ATTGAGCTGTTTGCCGCAAC 60.319 50.000 4.98 2.17 44.23 4.17
2106 6615 2.050077 GAGCTGTTTGCCGCAACC 60.050 61.111 4.98 0.00 44.23 3.77
2107 6616 3.879351 GAGCTGTTTGCCGCAACCG 62.879 63.158 4.98 0.00 44.23 4.44
2109 6618 4.999939 CTGTTTGCCGCAACCGCC 63.000 66.667 4.98 0.00 33.11 6.13
2111 6620 4.999939 GTTTGCCGCAACCGCCAG 63.000 66.667 4.98 0.00 33.11 4.85
2128 6637 4.825252 GGGTTACGACGCCGCCAT 62.825 66.667 0.00 0.00 39.95 4.40
2129 6638 2.816520 GGTTACGACGCCGCCATT 60.817 61.111 0.00 0.00 39.95 3.16
2130 6639 2.398036 GTTACGACGCCGCCATTG 59.602 61.111 0.00 0.00 39.95 2.82
2131 6640 3.492545 TTACGACGCCGCCATTGC 61.493 61.111 0.00 0.00 39.95 3.56
2132 6641 3.943479 TTACGACGCCGCCATTGCT 62.943 57.895 0.00 0.00 39.95 3.91
2133 6642 2.560051 TTACGACGCCGCCATTGCTA 62.560 55.000 0.00 0.00 39.95 3.49
2134 6643 2.947118 TACGACGCCGCCATTGCTAG 62.947 60.000 0.00 0.00 39.95 3.42
2135 6644 3.272334 GACGCCGCCATTGCTAGG 61.272 66.667 0.00 0.00 34.43 3.02
2136 6645 4.856801 ACGCCGCCATTGCTAGGG 62.857 66.667 0.00 0.00 34.43 3.53
2137 6646 4.856801 CGCCGCCATTGCTAGGGT 62.857 66.667 0.00 0.00 34.43 4.34
2138 6647 2.440247 GCCGCCATTGCTAGGGTT 60.440 61.111 0.00 0.00 34.43 4.11
2139 6648 1.153046 GCCGCCATTGCTAGGGTTA 60.153 57.895 0.00 0.00 34.43 2.85
2140 6649 1.166531 GCCGCCATTGCTAGGGTTAG 61.167 60.000 0.00 0.00 34.43 2.34
2141 6650 0.535102 CCGCCATTGCTAGGGTTAGG 60.535 60.000 0.00 0.00 34.43 2.69
2142 6651 0.535102 CGCCATTGCTAGGGTTAGGG 60.535 60.000 0.00 0.00 34.43 3.53
2143 6652 0.823769 GCCATTGCTAGGGTTAGGGC 60.824 60.000 0.00 0.00 33.53 5.19
2144 6653 0.535102 CCATTGCTAGGGTTAGGGCG 60.535 60.000 0.00 0.00 0.00 6.13
2145 6654 1.148498 ATTGCTAGGGTTAGGGCGC 59.852 57.895 0.00 0.00 0.00 6.53
2146 6655 2.339275 ATTGCTAGGGTTAGGGCGCC 62.339 60.000 21.18 21.18 0.00 6.53
2147 6656 4.603946 GCTAGGGTTAGGGCGCCG 62.604 72.222 22.54 3.77 0.00 6.46
2148 6657 2.836360 CTAGGGTTAGGGCGCCGA 60.836 66.667 22.54 8.19 0.00 5.54
2149 6658 2.123164 TAGGGTTAGGGCGCCGAT 60.123 61.111 22.54 14.64 0.00 4.18
2150 6659 2.436087 CTAGGGTTAGGGCGCCGATG 62.436 65.000 22.54 0.00 0.00 3.84
2151 6660 4.171103 GGGTTAGGGCGCCGATGT 62.171 66.667 22.54 7.45 0.00 3.06
2152 6661 2.588034 GGTTAGGGCGCCGATGTC 60.588 66.667 22.54 5.83 0.00 3.06
2153 6662 2.499685 GTTAGGGCGCCGATGTCT 59.500 61.111 22.54 14.11 0.00 3.41
2154 6663 1.591863 GTTAGGGCGCCGATGTCTC 60.592 63.158 22.54 4.09 0.00 3.36
2155 6664 2.792947 TTAGGGCGCCGATGTCTCC 61.793 63.158 22.54 3.21 0.00 3.71
2161 6670 3.896133 GCCGATGTCTCCGCGGTA 61.896 66.667 27.15 12.33 46.38 4.02
2162 6671 2.331805 CCGATGTCTCCGCGGTAG 59.668 66.667 27.15 20.47 40.17 3.18
2163 6672 2.478890 CCGATGTCTCCGCGGTAGT 61.479 63.158 27.15 8.04 40.17 2.73
2164 6673 1.162181 CCGATGTCTCCGCGGTAGTA 61.162 60.000 27.15 11.20 40.17 1.82
2165 6674 0.873054 CGATGTCTCCGCGGTAGTAT 59.127 55.000 27.15 15.64 0.00 2.12
2166 6675 1.399855 CGATGTCTCCGCGGTAGTATG 60.400 57.143 27.15 7.29 0.00 2.39
2167 6676 1.878088 GATGTCTCCGCGGTAGTATGA 59.122 52.381 27.15 11.76 0.00 2.15
2168 6677 1.306148 TGTCTCCGCGGTAGTATGAG 58.694 55.000 27.15 13.52 0.00 2.90
2169 6678 0.040246 GTCTCCGCGGTAGTATGAGC 60.040 60.000 27.15 5.79 0.00 4.26
2170 6679 0.179026 TCTCCGCGGTAGTATGAGCT 60.179 55.000 27.15 0.00 0.00 4.09
2171 6680 1.071228 TCTCCGCGGTAGTATGAGCTA 59.929 52.381 27.15 0.00 0.00 3.32
2172 6681 1.465387 CTCCGCGGTAGTATGAGCTAG 59.535 57.143 27.15 6.34 0.00 3.42
2173 6682 1.202734 TCCGCGGTAGTATGAGCTAGT 60.203 52.381 27.15 0.00 0.00 2.57
2174 6683 1.607628 CCGCGGTAGTATGAGCTAGTT 59.392 52.381 19.50 0.00 0.00 2.24
2175 6684 2.810274 CCGCGGTAGTATGAGCTAGTTA 59.190 50.000 19.50 0.00 0.00 2.24
2176 6685 3.251729 CCGCGGTAGTATGAGCTAGTTAA 59.748 47.826 19.50 0.00 0.00 2.01
2177 6686 4.261322 CCGCGGTAGTATGAGCTAGTTAAA 60.261 45.833 19.50 0.00 0.00 1.52
2178 6687 5.276270 CGCGGTAGTATGAGCTAGTTAAAA 58.724 41.667 0.00 0.00 0.00 1.52
2179 6688 5.745294 CGCGGTAGTATGAGCTAGTTAAAAA 59.255 40.000 0.00 0.00 0.00 1.94
2180 6689 6.291479 CGCGGTAGTATGAGCTAGTTAAAAAC 60.291 42.308 0.00 0.00 0.00 2.43
2181 6690 6.019237 GCGGTAGTATGAGCTAGTTAAAAACC 60.019 42.308 0.00 0.00 0.00 3.27
2182 6691 7.037438 CGGTAGTATGAGCTAGTTAAAAACCA 58.963 38.462 0.00 0.00 0.00 3.67
2183 6692 7.546667 CGGTAGTATGAGCTAGTTAAAAACCAA 59.453 37.037 0.00 0.00 0.00 3.67
2184 6693 9.223099 GGTAGTATGAGCTAGTTAAAAACCAAA 57.777 33.333 0.00 0.00 0.00 3.28
2206 6715 9.991388 CCAAATTAATTATTGAGTTGCAATTGG 57.009 29.630 0.59 3.27 44.68 3.16
2210 6719 8.984891 TTAATTATTGAGTTGCAATTGGACTG 57.015 30.769 0.59 0.00 44.68 3.51
2211 6720 6.594788 ATTATTGAGTTGCAATTGGACTGT 57.405 33.333 0.59 0.00 44.68 3.55
2212 6721 7.701539 ATTATTGAGTTGCAATTGGACTGTA 57.298 32.000 0.59 0.00 44.68 2.74
2213 6722 4.829064 TTGAGTTGCAATTGGACTGTAC 57.171 40.909 0.59 0.00 0.00 2.90
2214 6723 4.085357 TGAGTTGCAATTGGACTGTACT 57.915 40.909 0.59 4.60 0.00 2.73
2215 6724 5.222079 TGAGTTGCAATTGGACTGTACTA 57.778 39.130 0.59 0.00 0.00 1.82
2216 6725 5.616270 TGAGTTGCAATTGGACTGTACTAA 58.384 37.500 0.59 0.00 0.00 2.24
2217 6726 6.237901 TGAGTTGCAATTGGACTGTACTAAT 58.762 36.000 0.59 0.00 0.00 1.73
2218 6727 6.371548 TGAGTTGCAATTGGACTGTACTAATC 59.628 38.462 0.59 0.00 0.00 1.75
2219 6728 6.237901 AGTTGCAATTGGACTGTACTAATCA 58.762 36.000 0.59 0.00 0.00 2.57
2220 6729 6.372659 AGTTGCAATTGGACTGTACTAATCAG 59.627 38.462 0.59 0.00 38.68 2.90
2221 6730 5.804639 TGCAATTGGACTGTACTAATCAGT 58.195 37.500 7.72 0.00 46.86 3.41
2222 6731 6.237901 TGCAATTGGACTGTACTAATCAGTT 58.762 36.000 7.72 0.00 44.68 3.16
2223 6732 6.714810 TGCAATTGGACTGTACTAATCAGTTT 59.285 34.615 7.72 0.00 44.68 2.66
2224 6733 7.023575 GCAATTGGACTGTACTAATCAGTTTG 58.976 38.462 7.72 0.00 44.68 2.93
2225 6734 7.308589 GCAATTGGACTGTACTAATCAGTTTGT 60.309 37.037 7.72 0.00 44.68 2.83
2226 6735 8.567948 CAATTGGACTGTACTAATCAGTTTGTT 58.432 33.333 0.00 0.00 44.68 2.83
2227 6736 7.724305 TTGGACTGTACTAATCAGTTTGTTC 57.276 36.000 0.00 0.00 44.68 3.18
2228 6737 6.228258 TGGACTGTACTAATCAGTTTGTTCC 58.772 40.000 0.00 0.00 44.68 3.62
2229 6738 5.642491 GGACTGTACTAATCAGTTTGTTCCC 59.358 44.000 0.00 0.00 44.68 3.97
2230 6739 6.182507 ACTGTACTAATCAGTTTGTTCCCA 57.817 37.500 0.00 0.00 42.50 4.37
2231 6740 6.597562 ACTGTACTAATCAGTTTGTTCCCAA 58.402 36.000 0.00 0.00 42.50 4.12
2232 6741 6.710744 ACTGTACTAATCAGTTTGTTCCCAAG 59.289 38.462 0.00 0.00 42.50 3.61
2233 6742 6.001460 TGTACTAATCAGTTTGTTCCCAAGG 58.999 40.000 0.00 0.00 36.14 3.61
2234 6743 5.319043 ACTAATCAGTTTGTTCCCAAGGA 57.681 39.130 0.00 0.00 0.00 3.36
2235 6744 5.701224 ACTAATCAGTTTGTTCCCAAGGAA 58.299 37.500 0.00 0.00 39.66 3.36
2236 6745 6.133356 ACTAATCAGTTTGTTCCCAAGGAAA 58.867 36.000 0.00 0.00 43.86 3.13
2237 6746 5.948742 AATCAGTTTGTTCCCAAGGAAAA 57.051 34.783 0.00 0.00 43.86 2.29
2238 6747 5.948742 ATCAGTTTGTTCCCAAGGAAAAA 57.051 34.783 0.00 0.00 43.86 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.303022 ACAAACTCAGATCGTGGTCCAT 59.697 45.455 0.00 0.00 0.00 3.41
4 5 1.691976 ACAAACTCAGATCGTGGTCCA 59.308 47.619 0.00 0.00 0.00 4.02
5 6 2.457366 ACAAACTCAGATCGTGGTCC 57.543 50.000 0.00 0.00 0.00 4.46
6 7 2.408704 CGAACAAACTCAGATCGTGGTC 59.591 50.000 0.00 0.00 0.00 4.02
7 8 2.404215 CGAACAAACTCAGATCGTGGT 58.596 47.619 0.00 0.00 0.00 4.16
8 9 1.726791 CCGAACAAACTCAGATCGTGG 59.273 52.381 0.00 0.00 0.00 4.94
9 10 2.663602 CTCCGAACAAACTCAGATCGTG 59.336 50.000 0.00 0.00 0.00 4.35
10 11 2.927014 GCTCCGAACAAACTCAGATCGT 60.927 50.000 0.00 0.00 0.00 3.73
11 12 1.656095 GCTCCGAACAAACTCAGATCG 59.344 52.381 0.00 0.00 0.00 3.69
12 13 2.966050 AGCTCCGAACAAACTCAGATC 58.034 47.619 0.00 0.00 0.00 2.75
13 14 3.673594 CGTAGCTCCGAACAAACTCAGAT 60.674 47.826 0.00 0.00 0.00 2.90
14 15 2.351447 CGTAGCTCCGAACAAACTCAGA 60.351 50.000 0.00 0.00 0.00 3.27
15 16 1.986378 CGTAGCTCCGAACAAACTCAG 59.014 52.381 0.00 0.00 0.00 3.35
16 17 1.336517 CCGTAGCTCCGAACAAACTCA 60.337 52.381 0.00 0.00 0.00 3.41
17 18 1.336609 ACCGTAGCTCCGAACAAACTC 60.337 52.381 0.00 0.00 0.00 3.01
18 19 0.677842 ACCGTAGCTCCGAACAAACT 59.322 50.000 0.00 0.00 0.00 2.66
19 20 2.352503 TACCGTAGCTCCGAACAAAC 57.647 50.000 0.00 0.00 0.00 2.93
20 21 2.231964 ACATACCGTAGCTCCGAACAAA 59.768 45.455 0.00 0.00 0.00 2.83
21 22 1.820519 ACATACCGTAGCTCCGAACAA 59.179 47.619 0.00 0.00 0.00 2.83
22 23 1.133598 CACATACCGTAGCTCCGAACA 59.866 52.381 0.00 0.00 0.00 3.18
23 24 1.836383 CACATACCGTAGCTCCGAAC 58.164 55.000 0.00 0.00 0.00 3.95
24 25 0.101759 GCACATACCGTAGCTCCGAA 59.898 55.000 0.00 0.00 0.00 4.30
25 26 1.731433 GGCACATACCGTAGCTCCGA 61.731 60.000 0.00 0.00 0.00 4.55
26 27 1.299926 GGCACATACCGTAGCTCCG 60.300 63.158 0.00 0.00 0.00 4.63
27 28 1.069258 GGGCACATACCGTAGCTCC 59.931 63.158 0.00 0.00 0.00 4.70
28 29 1.299926 CGGGCACATACCGTAGCTC 60.300 63.158 0.00 0.00 46.03 4.09
29 30 2.812499 CGGGCACATACCGTAGCT 59.188 61.111 0.00 0.00 46.03 3.32
35 36 0.542805 TCTTAACCCGGGCACATACC 59.457 55.000 24.08 0.00 0.00 2.73
36 37 2.406596 TTCTTAACCCGGGCACATAC 57.593 50.000 24.08 0.00 0.00 2.39
37 38 3.244981 ACTTTTCTTAACCCGGGCACATA 60.245 43.478 24.08 6.05 0.00 2.29
38 39 2.167662 CTTTTCTTAACCCGGGCACAT 58.832 47.619 24.08 7.22 0.00 3.21
39 40 1.133730 ACTTTTCTTAACCCGGGCACA 60.134 47.619 24.08 1.86 0.00 4.57
40 41 1.268625 CACTTTTCTTAACCCGGGCAC 59.731 52.381 24.08 0.00 0.00 5.01
41 42 1.143277 TCACTTTTCTTAACCCGGGCA 59.857 47.619 24.08 5.65 0.00 5.36
42 43 1.810755 CTCACTTTTCTTAACCCGGGC 59.189 52.381 24.08 0.00 0.00 6.13
43 44 2.433436 CCTCACTTTTCTTAACCCGGG 58.567 52.381 22.25 22.25 0.00 5.73
44 45 1.810755 GCCTCACTTTTCTTAACCCGG 59.189 52.381 0.00 0.00 0.00 5.73
45 46 1.463444 CGCCTCACTTTTCTTAACCCG 59.537 52.381 0.00 0.00 0.00 5.28
46 47 1.199327 GCGCCTCACTTTTCTTAACCC 59.801 52.381 0.00 0.00 0.00 4.11
47 48 1.199327 GGCGCCTCACTTTTCTTAACC 59.801 52.381 22.15 0.00 0.00 2.85
48 49 1.877443 TGGCGCCTCACTTTTCTTAAC 59.123 47.619 29.70 0.00 0.00 2.01
49 50 2.264005 TGGCGCCTCACTTTTCTTAA 57.736 45.000 29.70 0.00 0.00 1.85
50 51 2.489938 ATGGCGCCTCACTTTTCTTA 57.510 45.000 29.70 1.81 0.00 2.10
51 52 1.541588 GAATGGCGCCTCACTTTTCTT 59.458 47.619 29.70 6.73 0.00 2.52
52 53 1.168714 GAATGGCGCCTCACTTTTCT 58.831 50.000 29.70 0.55 0.00 2.52
53 54 0.179189 CGAATGGCGCCTCACTTTTC 60.179 55.000 29.70 17.76 0.00 2.29
54 55 0.889186 ACGAATGGCGCCTCACTTTT 60.889 50.000 29.70 11.21 46.04 2.27
55 56 0.036765 TACGAATGGCGCCTCACTTT 60.037 50.000 29.70 13.06 46.04 2.66
56 57 0.460284 CTACGAATGGCGCCTCACTT 60.460 55.000 29.70 15.50 46.04 3.16
57 58 1.141881 CTACGAATGGCGCCTCACT 59.858 57.895 29.70 9.07 46.04 3.41
58 59 1.883084 CCTACGAATGGCGCCTCAC 60.883 63.158 29.70 16.77 46.04 3.51
59 60 2.499205 CCTACGAATGGCGCCTCA 59.501 61.111 29.70 8.87 46.04 3.86
60 61 2.967615 GCCTACGAATGGCGCCTC 60.968 66.667 29.70 17.18 46.04 4.70
71 72 1.805945 GACAACTGCCTCGCCTACG 60.806 63.158 0.00 0.00 42.01 3.51
72 73 1.805945 CGACAACTGCCTCGCCTAC 60.806 63.158 0.00 0.00 0.00 3.18
73 74 2.571757 CGACAACTGCCTCGCCTA 59.428 61.111 0.00 0.00 0.00 3.93
81 82 1.357334 TTTTTCCGGCGACAACTGC 59.643 52.632 9.30 0.00 0.00 4.40
96 97 4.478686 AGGAGAGGTGGGCACTATATTTTT 59.521 41.667 0.00 0.00 0.00 1.94
97 98 4.047883 AGGAGAGGTGGGCACTATATTTT 58.952 43.478 0.00 0.00 0.00 1.82
98 99 3.669949 AGGAGAGGTGGGCACTATATTT 58.330 45.455 0.00 0.00 0.00 1.40
99 100 3.352611 AGGAGAGGTGGGCACTATATT 57.647 47.619 0.00 0.00 0.00 1.28
100 101 3.243724 GAAGGAGAGGTGGGCACTATAT 58.756 50.000 0.00 0.00 0.00 0.86
101 102 2.679082 GAAGGAGAGGTGGGCACTATA 58.321 52.381 0.00 0.00 0.00 1.31
102 103 1.501582 GAAGGAGAGGTGGGCACTAT 58.498 55.000 0.00 0.00 0.00 2.12
103 104 0.617820 GGAAGGAGAGGTGGGCACTA 60.618 60.000 0.00 0.00 0.00 2.74
104 105 1.920835 GGAAGGAGAGGTGGGCACT 60.921 63.158 0.00 0.00 0.00 4.40
105 106 2.224159 TGGAAGGAGAGGTGGGCAC 61.224 63.158 0.00 0.00 0.00 5.01
106 107 2.206900 TGGAAGGAGAGGTGGGCA 59.793 61.111 0.00 0.00 0.00 5.36
107 108 2.671682 GTGGAAGGAGAGGTGGGC 59.328 66.667 0.00 0.00 0.00 5.36
108 109 1.229658 AGGTGGAAGGAGAGGTGGG 60.230 63.158 0.00 0.00 0.00 4.61
109 110 1.268283 GGAGGTGGAAGGAGAGGTGG 61.268 65.000 0.00 0.00 0.00 4.61
110 111 1.608717 CGGAGGTGGAAGGAGAGGTG 61.609 65.000 0.00 0.00 0.00 4.00
111 112 1.305381 CGGAGGTGGAAGGAGAGGT 60.305 63.158 0.00 0.00 0.00 3.85
112 113 1.305381 ACGGAGGTGGAAGGAGAGG 60.305 63.158 0.00 0.00 0.00 3.69
113 114 1.324005 GGACGGAGGTGGAAGGAGAG 61.324 65.000 0.00 0.00 0.00 3.20
114 115 1.305046 GGACGGAGGTGGAAGGAGA 60.305 63.158 0.00 0.00 0.00 3.71
115 116 2.711922 CGGACGGAGGTGGAAGGAG 61.712 68.421 0.00 0.00 0.00 3.69
116 117 2.678934 CGGACGGAGGTGGAAGGA 60.679 66.667 0.00 0.00 0.00 3.36
117 118 2.678934 TCGGACGGAGGTGGAAGG 60.679 66.667 0.00 0.00 0.00 3.46
118 119 2.885861 CTCGGACGGAGGTGGAAG 59.114 66.667 2.13 0.00 39.22 3.46
119 120 3.379445 GCTCGGACGGAGGTGGAA 61.379 66.667 11.57 0.00 43.36 3.53
124 125 3.111939 CACTAGCTCGGACGGAGG 58.888 66.667 11.57 0.00 43.36 4.30
125 126 2.409651 GCACTAGCTCGGACGGAG 59.590 66.667 5.68 5.68 46.06 4.63
126 127 3.506096 CGCACTAGCTCGGACGGA 61.506 66.667 0.00 0.00 39.10 4.69
127 128 3.456431 CTCGCACTAGCTCGGACGG 62.456 68.421 0.00 0.00 39.10 4.79
128 129 2.023461 CTCGCACTAGCTCGGACG 59.977 66.667 0.00 0.00 39.10 4.79
129 130 1.090625 TCTCTCGCACTAGCTCGGAC 61.091 60.000 0.00 0.00 39.10 4.79
130 131 0.179043 ATCTCTCGCACTAGCTCGGA 60.179 55.000 0.00 1.48 39.10 4.55
131 132 1.514003 TATCTCTCGCACTAGCTCGG 58.486 55.000 0.00 0.00 39.10 4.63
132 133 2.159585 CCATATCTCTCGCACTAGCTCG 60.160 54.545 0.00 0.00 39.10 5.03
133 134 2.817258 ACCATATCTCTCGCACTAGCTC 59.183 50.000 0.00 0.00 39.10 4.09
134 135 2.870175 ACCATATCTCTCGCACTAGCT 58.130 47.619 0.00 0.00 39.10 3.32
135 136 3.004839 TGAACCATATCTCTCGCACTAGC 59.995 47.826 0.00 0.00 37.42 3.42
136 137 4.837896 TGAACCATATCTCTCGCACTAG 57.162 45.455 0.00 0.00 0.00 2.57
137 138 4.827284 TGATGAACCATATCTCTCGCACTA 59.173 41.667 0.00 0.00 0.00 2.74
138 139 3.638627 TGATGAACCATATCTCTCGCACT 59.361 43.478 0.00 0.00 0.00 4.40
139 140 3.982475 TGATGAACCATATCTCTCGCAC 58.018 45.455 0.00 0.00 0.00 5.34
140 141 3.006217 CCTGATGAACCATATCTCTCGCA 59.994 47.826 0.00 0.00 0.00 5.10
141 142 3.583806 CCTGATGAACCATATCTCTCGC 58.416 50.000 0.00 0.00 0.00 5.03
142 143 3.576118 ACCCTGATGAACCATATCTCTCG 59.424 47.826 0.00 0.00 0.00 4.04
143 144 5.559148 AACCCTGATGAACCATATCTCTC 57.441 43.478 0.00 0.00 0.00 3.20
144 145 5.192522 ACAAACCCTGATGAACCATATCTCT 59.807 40.000 0.00 0.00 0.00 3.10
145 146 5.440610 ACAAACCCTGATGAACCATATCTC 58.559 41.667 0.00 0.00 0.00 2.75
146 147 5.440610 GACAAACCCTGATGAACCATATCT 58.559 41.667 0.00 0.00 0.00 1.98
147 148 4.580580 GGACAAACCCTGATGAACCATATC 59.419 45.833 0.00 0.00 0.00 1.63
148 149 4.230502 AGGACAAACCCTGATGAACCATAT 59.769 41.667 0.00 0.00 40.05 1.78
149 150 3.591527 AGGACAAACCCTGATGAACCATA 59.408 43.478 0.00 0.00 40.05 2.74
150 151 2.379907 AGGACAAACCCTGATGAACCAT 59.620 45.455 0.00 0.00 40.05 3.55
151 152 1.780309 AGGACAAACCCTGATGAACCA 59.220 47.619 0.00 0.00 40.05 3.67
152 153 2.586648 AGGACAAACCCTGATGAACC 57.413 50.000 0.00 0.00 40.05 3.62
153 154 4.394729 TGTTAGGACAAACCCTGATGAAC 58.605 43.478 0.00 0.00 40.05 3.18
154 155 4.715534 TGTTAGGACAAACCCTGATGAA 57.284 40.909 0.00 0.00 40.05 2.57
155 156 4.104102 AGTTGTTAGGACAAACCCTGATGA 59.896 41.667 0.00 0.00 46.62 2.92
156 157 4.398319 AGTTGTTAGGACAAACCCTGATG 58.602 43.478 0.00 0.00 46.62 3.07
157 158 4.724279 AGTTGTTAGGACAAACCCTGAT 57.276 40.909 0.00 0.00 46.62 2.90
158 159 4.513406 AAGTTGTTAGGACAAACCCTGA 57.487 40.909 0.00 0.00 46.62 3.86
159 160 4.642885 TGAAAGTTGTTAGGACAAACCCTG 59.357 41.667 0.00 0.00 46.62 4.45
160 161 4.643334 GTGAAAGTTGTTAGGACAAACCCT 59.357 41.667 0.00 0.00 46.62 4.34
161 162 4.399934 TGTGAAAGTTGTTAGGACAAACCC 59.600 41.667 0.00 0.00 46.62 4.11
162 163 5.570234 TGTGAAAGTTGTTAGGACAAACC 57.430 39.130 0.00 0.00 46.62 3.27
163 164 5.977129 CCATGTGAAAGTTGTTAGGACAAAC 59.023 40.000 0.00 0.00 46.62 2.93
164 165 5.888724 TCCATGTGAAAGTTGTTAGGACAAA 59.111 36.000 0.00 0.00 46.62 2.83
165 166 5.441500 TCCATGTGAAAGTTGTTAGGACAA 58.558 37.500 0.00 0.00 43.23 3.18
166 167 5.042463 TCCATGTGAAAGTTGTTAGGACA 57.958 39.130 0.00 0.00 0.00 4.02
167 168 6.653320 TGTATCCATGTGAAAGTTGTTAGGAC 59.347 38.462 0.00 0.00 0.00 3.85
168 169 6.774673 TGTATCCATGTGAAAGTTGTTAGGA 58.225 36.000 0.00 0.00 0.00 2.94
169 170 7.447374 TTGTATCCATGTGAAAGTTGTTAGG 57.553 36.000 0.00 0.00 0.00 2.69
170 171 7.807907 GGTTTGTATCCATGTGAAAGTTGTTAG 59.192 37.037 0.00 0.00 0.00 2.34
171 172 7.285629 TGGTTTGTATCCATGTGAAAGTTGTTA 59.714 33.333 0.00 0.00 0.00 2.41
172 173 6.097554 TGGTTTGTATCCATGTGAAAGTTGTT 59.902 34.615 0.00 0.00 0.00 2.83
173 174 5.596361 TGGTTTGTATCCATGTGAAAGTTGT 59.404 36.000 0.00 0.00 0.00 3.32
174 175 6.083098 TGGTTTGTATCCATGTGAAAGTTG 57.917 37.500 0.00 0.00 0.00 3.16
175 176 6.493115 TGATGGTTTGTATCCATGTGAAAGTT 59.507 34.615 2.04 0.00 44.52 2.66
193 194 1.465188 TGGTGGACCCCTGATGGTT 60.465 57.895 0.00 0.00 39.24 3.67
198 199 0.490017 TAAGACTGGTGGACCCCTGA 59.510 55.000 11.28 0.00 34.29 3.86
213 214 3.133362 GTGGACCGTCCCATATGTTAAGA 59.867 47.826 15.24 0.00 38.66 2.10
214 215 3.463944 GTGGACCGTCCCATATGTTAAG 58.536 50.000 15.24 0.00 38.66 1.85
250 251 6.157645 AGGAATTGTCATGATACTCTGGTCTT 59.842 38.462 0.00 0.00 0.00 3.01
272 273 0.322456 GCATTGGTGGTGCAGTAGGA 60.322 55.000 0.00 0.00 42.08 2.94
285 286 0.462047 GTAGTCGTGGGAGGCATTGG 60.462 60.000 0.00 0.00 0.00 3.16
286 287 0.249120 TGTAGTCGTGGGAGGCATTG 59.751 55.000 0.00 0.00 0.00 2.82
305 306 2.579201 CGTGAGGGCGATGAGGTT 59.421 61.111 0.00 0.00 0.00 3.50
326 327 1.512926 CGGTGCTAGTCTGCAGTTTT 58.487 50.000 14.67 3.14 44.20 2.43
338 339 2.443390 GGCCTAGACCCGGTGCTA 60.443 66.667 0.00 0.01 0.00 3.49
356 357 0.983378 GGATGGTGGACAGGGCTACT 60.983 60.000 0.00 0.00 0.00 2.57
357 358 1.527370 GGATGGTGGACAGGGCTAC 59.473 63.158 0.00 0.00 0.00 3.58
360 361 4.489771 CCGGATGGTGGACAGGGC 62.490 72.222 0.00 0.00 0.00 5.19
361 362 2.687200 TCCGGATGGTGGACAGGG 60.687 66.667 0.00 0.00 36.30 4.45
364 365 2.211375 CATCTCCGGATGGTGGACA 58.789 57.895 3.57 0.00 43.97 4.02
375 376 0.179134 GGTCCAGAACGACATCTCCG 60.179 60.000 0.00 0.00 34.24 4.63
389 390 1.455822 AGGTTGATTCCTTGGGTCCA 58.544 50.000 0.00 0.00 33.52 4.02
398 399 1.407851 GGGACGGGTAAGGTTGATTCC 60.408 57.143 0.00 0.00 0.00 3.01
415 416 0.999712 GAGAAAATCCTGGTGGGGGA 59.000 55.000 0.00 0.00 37.26 4.81
456 457 7.155328 CACGTGAGCTATTTAGGGAAGATTAT 58.845 38.462 10.90 0.00 0.00 1.28
475 476 5.353123 GGCTTATTTCAGGATTTACACGTGA 59.647 40.000 25.01 0.00 0.00 4.35
480 481 6.882140 TCTTTCGGCTTATTTCAGGATTTACA 59.118 34.615 0.00 0.00 0.00 2.41
499 500 9.907576 GATAGATCAACATTTGTACTTCTTTCG 57.092 33.333 0.00 0.00 0.00 3.46
553 554 8.928733 CACATACGTACACACCTAAGTTTAATT 58.071 33.333 0.00 0.00 0.00 1.40
554 555 7.063780 GCACATACGTACACACCTAAGTTTAAT 59.936 37.037 0.00 0.00 0.00 1.40
555 556 6.365789 GCACATACGTACACACCTAAGTTTAA 59.634 38.462 0.00 0.00 0.00 1.52
607 612 5.220951 CGCTATATCATGTCTTATCTCGGCT 60.221 44.000 0.00 0.00 0.00 5.52
611 616 5.746245 GCACCGCTATATCATGTCTTATCTC 59.254 44.000 0.00 0.00 0.00 2.75
626 636 3.772932 CAAAACATTCATGCACCGCTAT 58.227 40.909 0.00 0.00 0.00 2.97
633 643 2.144730 GCCAAGCAAAACATTCATGCA 58.855 42.857 0.00 0.00 42.45 3.96
706 2695 4.612939 GCGCCGTCCTCCAAAAATATTATC 60.613 45.833 0.00 0.00 0.00 1.75
711 2700 0.321741 TGCGCCGTCCTCCAAAAATA 60.322 50.000 4.18 0.00 0.00 1.40
715 2704 4.243008 TGTGCGCCGTCCTCCAAA 62.243 61.111 4.18 0.00 0.00 3.28
734 3835 5.012239 CCTACCATACAATAGGCATGCATT 58.988 41.667 21.36 8.81 31.89 3.56
752 3853 0.535553 TTGTTTGCCGGTGTCCTACC 60.536 55.000 1.90 0.00 46.56 3.18
800 3901 6.071784 ACAAGCATGACACATATTGACAACAT 60.072 34.615 0.00 0.00 33.44 2.71
839 3944 1.447838 ATCGCGCATGTCGTCCTTT 60.448 52.632 8.75 0.00 41.07 3.11
1188 4298 1.402984 GCTTCGTTGGAGATGACGACT 60.403 52.381 0.00 0.00 46.61 4.18
1271 4381 3.447586 AGCTCTGCGTGGAACTAATAAGA 59.552 43.478 0.00 0.00 31.75 2.10
1280 4390 1.067565 CAGAACTAGCTCTGCGTGGAA 60.068 52.381 10.11 0.00 36.67 3.53
1298 5766 2.050144 AGTATGATACCAGGTGGGCAG 58.950 52.381 0.76 0.00 42.05 4.85
1354 5822 6.037391 GGGTTACACTTATTTATAGCGTTGCA 59.963 38.462 0.00 0.00 0.00 4.08
1358 5826 6.764560 CCAAGGGTTACACTTATTTATAGCGT 59.235 38.462 0.00 0.00 0.00 5.07
1425 5927 3.564225 GGGTCTAATAAATGTGGAAGCCG 59.436 47.826 0.00 0.00 0.00 5.52
1429 5931 6.795590 TCTTTGGGGTCTAATAAATGTGGAA 58.204 36.000 0.00 0.00 0.00 3.53
1441 5944 5.718130 TCGATAGTTTTCTCTTTGGGGTCTA 59.282 40.000 0.00 0.00 37.40 2.59
1559 6062 7.327975 TCCCAGTAGTGTTATACTTGTTGATG 58.672 38.462 0.00 0.00 40.89 3.07
1562 6065 7.972832 TTTCCCAGTAGTGTTATACTTGTTG 57.027 36.000 0.00 0.00 40.89 3.33
1572 6075 7.182206 ACCTATATGTCTTTTCCCAGTAGTGTT 59.818 37.037 0.00 0.00 0.00 3.32
1588 6092 6.428159 CACTAATTTGAGCCCACCTATATGTC 59.572 42.308 0.00 0.00 0.00 3.06
1628 6132 2.355310 CCAAAATAGTAGTGGCGGGTGA 60.355 50.000 0.00 0.00 0.00 4.02
1640 6144 5.048013 GCCACAGCTACTTTTCCAAAATAGT 60.048 40.000 0.00 0.00 35.50 2.12
1707 6212 3.146066 GCAGGTCATATATTTTGCCCGA 58.854 45.455 0.00 0.00 0.00 5.14
1731 6236 9.083080 GTGGGCAAATTTGTAATAGTTTATGAC 57.917 33.333 19.03 0.00 0.00 3.06
1811 6319 0.677288 TTTTCTCCCGCGACTCTTGA 59.323 50.000 8.23 0.00 0.00 3.02
1819 6327 0.041312 CGGCATATTTTTCTCCCGCG 60.041 55.000 0.00 0.00 0.00 6.46
1825 6333 3.466836 TGATCTCGCGGCATATTTTTCT 58.533 40.909 6.13 0.00 0.00 2.52
1838 6346 3.433615 GGTTGCCATAGTATTGATCTCGC 59.566 47.826 0.00 0.00 0.00 5.03
1839 6347 3.997021 GGGTTGCCATAGTATTGATCTCG 59.003 47.826 0.00 0.00 0.00 4.04
1840 6348 4.973168 TGGGTTGCCATAGTATTGATCTC 58.027 43.478 0.00 0.00 0.00 2.75
1841 6349 5.589367 ATGGGTTGCCATAGTATTGATCT 57.411 39.130 0.00 0.00 0.00 2.75
1842 6350 5.648092 GGTATGGGTTGCCATAGTATTGATC 59.352 44.000 0.00 0.00 33.93 2.92
1853 6362 4.505742 GGAAATTTTTGGTATGGGTTGCCA 60.506 41.667 0.00 0.00 38.48 4.92
1883 6392 0.102120 CGCCACTGCAAACTTTTGGA 59.898 50.000 3.95 0.00 38.57 3.53
1926 6435 5.417580 CCATAAATCTCCGAACCCAGAAAAA 59.582 40.000 0.00 0.00 0.00 1.94
1930 6439 2.158813 GCCATAAATCTCCGAACCCAGA 60.159 50.000 0.00 0.00 0.00 3.86
1934 6443 0.586802 GCGCCATAAATCTCCGAACC 59.413 55.000 0.00 0.00 0.00 3.62
1936 6445 1.295792 GTGCGCCATAAATCTCCGAA 58.704 50.000 4.18 0.00 0.00 4.30
1938 6447 1.229428 ATGTGCGCCATAAATCTCCG 58.771 50.000 4.18 0.00 29.82 4.63
1943 6452 2.032799 CGTGGTAATGTGCGCCATAAAT 59.967 45.455 4.18 0.00 34.52 1.40
1954 6463 1.376295 GGGGCGTTCGTGGTAATGT 60.376 57.895 0.00 0.00 0.00 2.71
1958 6467 4.054825 GTCGGGGCGTTCGTGGTA 62.055 66.667 0.00 0.00 0.00 3.25
1965 6474 1.174078 AATTTTTCCGTCGGGGCGTT 61.174 50.000 12.29 0.00 34.94 4.84
1972 6481 5.849604 GGAAAACTACTCAATTTTTCCGTCG 59.150 40.000 8.82 0.00 45.03 5.12
1979 6488 4.339814 TGCGGTGGAAAACTACTCAATTTT 59.660 37.500 0.00 0.00 0.00 1.82
1997 6506 1.722011 CCGATTTGAGTAAGTGCGGT 58.278 50.000 0.00 0.00 33.14 5.68
2038 6547 2.359570 AATATCGGTGCGGACGGGTC 62.360 60.000 14.38 0.00 0.00 4.46
2039 6548 2.428925 AATATCGGTGCGGACGGGT 61.429 57.895 14.38 10.18 0.00 5.28
2041 6550 1.954146 CCAATATCGGTGCGGACGG 60.954 63.158 8.36 8.36 0.00 4.79
2042 6551 0.031043 TACCAATATCGGTGCGGACG 59.969 55.000 0.00 0.00 40.39 4.79
2043 6552 1.494824 GTACCAATATCGGTGCGGAC 58.505 55.000 0.00 0.00 40.39 4.79
2044 6553 3.972107 GTACCAATATCGGTGCGGA 57.028 52.632 0.00 0.00 40.39 5.54
2047 6556 2.034305 AGAGACGTACCAATATCGGTGC 59.966 50.000 0.00 0.00 40.39 5.01
2048 6557 3.304525 GGAGAGACGTACCAATATCGGTG 60.305 52.174 0.00 0.00 40.39 4.94
2049 6558 2.883386 GGAGAGACGTACCAATATCGGT 59.117 50.000 0.00 0.00 43.46 4.69
2050 6559 2.228343 GGGAGAGACGTACCAATATCGG 59.772 54.545 0.00 0.00 0.00 4.18
2051 6560 3.147629 AGGGAGAGACGTACCAATATCG 58.852 50.000 0.00 0.00 0.00 2.92
2052 6561 4.023021 GTGAGGGAGAGACGTACCAATATC 60.023 50.000 0.00 0.00 0.00 1.63
2053 6562 3.890147 GTGAGGGAGAGACGTACCAATAT 59.110 47.826 0.00 0.00 0.00 1.28
2054 6563 3.285484 GTGAGGGAGAGACGTACCAATA 58.715 50.000 0.00 0.00 0.00 1.90
2055 6564 2.100989 GTGAGGGAGAGACGTACCAAT 58.899 52.381 0.00 0.00 0.00 3.16
2056 6565 1.542492 GTGAGGGAGAGACGTACCAA 58.458 55.000 0.00 0.00 0.00 3.67
2057 6566 0.323178 GGTGAGGGAGAGACGTACCA 60.323 60.000 0.00 0.00 0.00 3.25
2058 6567 0.034283 AGGTGAGGGAGAGACGTACC 60.034 60.000 0.00 0.00 0.00 3.34
2059 6568 1.381522 GAGGTGAGGGAGAGACGTAC 58.618 60.000 0.00 0.00 0.00 3.67
2060 6569 0.107800 CGAGGTGAGGGAGAGACGTA 60.108 60.000 0.00 0.00 0.00 3.57
2061 6570 1.377463 CGAGGTGAGGGAGAGACGT 60.377 63.158 0.00 0.00 0.00 4.34
2062 6571 1.370587 GACGAGGTGAGGGAGAGACG 61.371 65.000 0.00 0.00 0.00 4.18
2063 6572 1.033202 GGACGAGGTGAGGGAGAGAC 61.033 65.000 0.00 0.00 0.00 3.36
2064 6573 1.303615 GGACGAGGTGAGGGAGAGA 59.696 63.158 0.00 0.00 0.00 3.10
2065 6574 1.755008 GGGACGAGGTGAGGGAGAG 60.755 68.421 0.00 0.00 0.00 3.20
2066 6575 2.359404 GGGACGAGGTGAGGGAGA 59.641 66.667 0.00 0.00 0.00 3.71
2067 6576 2.760385 GGGGACGAGGTGAGGGAG 60.760 72.222 0.00 0.00 0.00 4.30
2068 6577 4.393778 GGGGGACGAGGTGAGGGA 62.394 72.222 0.00 0.00 0.00 4.20
2069 6578 4.715130 TGGGGGACGAGGTGAGGG 62.715 72.222 0.00 0.00 0.00 4.30
2070 6579 1.995626 AATGGGGGACGAGGTGAGG 60.996 63.158 0.00 0.00 0.00 3.86
2071 6580 1.221840 CAATGGGGGACGAGGTGAG 59.778 63.158 0.00 0.00 0.00 3.51
2072 6581 1.229368 TCAATGGGGGACGAGGTGA 60.229 57.895 0.00 0.00 0.00 4.02
2073 6582 1.221840 CTCAATGGGGGACGAGGTG 59.778 63.158 0.00 0.00 0.00 4.00
2074 6583 2.670148 GCTCAATGGGGGACGAGGT 61.670 63.158 0.00 0.00 0.00 3.85
2075 6584 2.190578 GCTCAATGGGGGACGAGG 59.809 66.667 0.00 0.00 0.00 4.63
2076 6585 1.153289 CAGCTCAATGGGGGACGAG 60.153 63.158 0.00 0.00 0.00 4.18
2077 6586 1.488705 AACAGCTCAATGGGGGACGA 61.489 55.000 0.00 0.00 0.00 4.20
2078 6587 0.609131 AAACAGCTCAATGGGGGACG 60.609 55.000 0.00 0.00 0.00 4.79
2079 6588 0.890683 CAAACAGCTCAATGGGGGAC 59.109 55.000 0.00 0.00 0.00 4.46
2080 6589 0.899717 GCAAACAGCTCAATGGGGGA 60.900 55.000 0.00 0.00 41.15 4.81
2081 6590 1.593265 GCAAACAGCTCAATGGGGG 59.407 57.895 0.00 0.00 41.15 5.40
2082 6591 1.593265 GGCAAACAGCTCAATGGGG 59.407 57.895 0.00 0.00 44.79 4.96
2083 6592 1.213537 CGGCAAACAGCTCAATGGG 59.786 57.895 0.00 0.00 44.79 4.00
2084 6593 1.444895 GCGGCAAACAGCTCAATGG 60.445 57.895 0.00 0.00 44.79 3.16
2085 6594 0.318869 TTGCGGCAAACAGCTCAATG 60.319 50.000 13.93 0.00 44.79 2.82
2086 6595 0.318955 GTTGCGGCAAACAGCTCAAT 60.319 50.000 18.23 0.00 44.79 2.57
2087 6596 1.065600 GTTGCGGCAAACAGCTCAA 59.934 52.632 18.23 0.00 44.79 3.02
2088 6597 2.721231 GTTGCGGCAAACAGCTCA 59.279 55.556 18.23 0.00 44.79 4.26
2089 6598 2.050077 GGTTGCGGCAAACAGCTC 60.050 61.111 24.93 7.97 44.79 4.09
2090 6599 3.964875 CGGTTGCGGCAAACAGCT 61.965 61.111 28.26 0.00 44.79 4.24
2092 6601 4.999939 GGCGGTTGCGGCAAACAG 63.000 66.667 28.26 21.08 44.10 3.16
2094 6603 4.999939 CTGGCGGTTGCGGCAAAC 63.000 66.667 20.51 20.51 43.61 2.93
2111 6620 4.825252 ATGGCGGCGTCGTAACCC 62.825 66.667 12.58 3.65 38.89 4.11
2112 6621 2.816520 AATGGCGGCGTCGTAACC 60.817 61.111 12.58 4.09 38.89 2.85
2113 6622 2.398036 CAATGGCGGCGTCGTAAC 59.602 61.111 12.58 2.19 38.89 2.50
2114 6623 3.492545 GCAATGGCGGCGTCGTAA 61.493 61.111 12.58 0.00 38.89 3.18
2124 6633 0.823769 GCCCTAACCCTAGCAATGGC 60.824 60.000 0.00 0.00 41.61 4.40
2125 6634 0.535102 CGCCCTAACCCTAGCAATGG 60.535 60.000 0.00 0.00 0.00 3.16
2126 6635 1.166531 GCGCCCTAACCCTAGCAATG 61.167 60.000 0.00 0.00 0.00 2.82
2127 6636 1.148498 GCGCCCTAACCCTAGCAAT 59.852 57.895 0.00 0.00 0.00 3.56
2128 6637 2.587889 GCGCCCTAACCCTAGCAA 59.412 61.111 0.00 0.00 0.00 3.91
2129 6638 3.476419 GGCGCCCTAACCCTAGCA 61.476 66.667 18.11 0.00 0.00 3.49
2130 6639 4.603946 CGGCGCCCTAACCCTAGC 62.604 72.222 23.46 0.00 0.00 3.42
2131 6640 2.207924 ATCGGCGCCCTAACCCTAG 61.208 63.158 23.46 2.86 0.00 3.02
2132 6641 2.123164 ATCGGCGCCCTAACCCTA 60.123 61.111 23.46 0.00 0.00 3.53
2133 6642 3.861797 CATCGGCGCCCTAACCCT 61.862 66.667 23.46 0.00 0.00 4.34
2134 6643 4.171103 ACATCGGCGCCCTAACCC 62.171 66.667 23.46 0.00 0.00 4.11
2135 6644 2.588034 GACATCGGCGCCCTAACC 60.588 66.667 23.46 3.69 0.00 2.85
2136 6645 1.591863 GAGACATCGGCGCCCTAAC 60.592 63.158 23.46 9.03 0.00 2.34
2137 6646 2.792947 GGAGACATCGGCGCCCTAA 61.793 63.158 23.46 7.13 0.00 2.69
2138 6647 3.224324 GGAGACATCGGCGCCCTA 61.224 66.667 23.46 10.21 0.00 3.53
2144 6653 3.825833 CTACCGCGGAGACATCGGC 62.826 68.421 35.90 0.00 46.33 5.54
2146 6655 0.873054 ATACTACCGCGGAGACATCG 59.127 55.000 35.90 7.50 0.00 3.84
2147 6656 1.878088 TCATACTACCGCGGAGACATC 59.122 52.381 35.90 0.00 0.00 3.06
2148 6657 1.880675 CTCATACTACCGCGGAGACAT 59.119 52.381 35.90 16.39 0.00 3.06
2149 6658 1.306148 CTCATACTACCGCGGAGACA 58.694 55.000 35.90 14.64 0.00 3.41
2150 6659 0.040246 GCTCATACTACCGCGGAGAC 60.040 60.000 35.90 9.14 0.00 3.36
2151 6660 0.179026 AGCTCATACTACCGCGGAGA 60.179 55.000 35.90 18.55 0.00 3.71
2152 6661 1.465387 CTAGCTCATACTACCGCGGAG 59.535 57.143 35.90 25.72 0.00 4.63
2153 6662 1.202734 ACTAGCTCATACTACCGCGGA 60.203 52.381 35.90 14.96 0.00 5.54
2154 6663 1.236628 ACTAGCTCATACTACCGCGG 58.763 55.000 26.86 26.86 0.00 6.46
2155 6664 4.478843 TTAACTAGCTCATACTACCGCG 57.521 45.455 0.00 0.00 0.00 6.46
2156 6665 6.019237 GGTTTTTAACTAGCTCATACTACCGC 60.019 42.308 0.00 0.00 0.00 5.68
2157 6666 7.037438 TGGTTTTTAACTAGCTCATACTACCG 58.963 38.462 0.00 0.00 0.00 4.02
2158 6667 8.782339 TTGGTTTTTAACTAGCTCATACTACC 57.218 34.615 0.00 0.00 0.00 3.18
2180 6689 9.991388 CCAATTGCAACTCAATAATTAATTTGG 57.009 29.630 5.91 2.60 44.23 3.28
2184 6693 9.590451 CAGTCCAATTGCAACTCAATAATTAAT 57.410 29.630 0.00 0.00 44.23 1.40
2185 6694 8.584157 ACAGTCCAATTGCAACTCAATAATTAA 58.416 29.630 0.00 0.00 44.23 1.40
2186 6695 8.121305 ACAGTCCAATTGCAACTCAATAATTA 57.879 30.769 0.00 0.00 44.23 1.40
2187 6696 6.996509 ACAGTCCAATTGCAACTCAATAATT 58.003 32.000 0.00 0.00 44.23 1.40
2188 6697 6.594788 ACAGTCCAATTGCAACTCAATAAT 57.405 33.333 0.00 0.00 44.23 1.28
2189 6698 6.714810 AGTACAGTCCAATTGCAACTCAATAA 59.285 34.615 0.00 0.00 44.23 1.40
2190 6699 6.237901 AGTACAGTCCAATTGCAACTCAATA 58.762 36.000 0.00 0.00 44.23 1.90
2191 6700 5.072741 AGTACAGTCCAATTGCAACTCAAT 58.927 37.500 0.00 0.00 46.82 2.57
2192 6701 4.460263 AGTACAGTCCAATTGCAACTCAA 58.540 39.130 0.00 0.00 39.32 3.02
2193 6702 4.085357 AGTACAGTCCAATTGCAACTCA 57.915 40.909 0.00 0.00 0.00 3.41
2194 6703 6.371548 TGATTAGTACAGTCCAATTGCAACTC 59.628 38.462 0.00 0.00 0.00 3.01
2195 6704 6.237901 TGATTAGTACAGTCCAATTGCAACT 58.762 36.000 0.00 2.90 0.00 3.16
2196 6705 6.149474 ACTGATTAGTACAGTCCAATTGCAAC 59.851 38.462 0.00 0.37 43.84 4.17
2197 6706 6.237901 ACTGATTAGTACAGTCCAATTGCAA 58.762 36.000 0.00 0.00 43.84 4.08
2198 6707 5.804639 ACTGATTAGTACAGTCCAATTGCA 58.195 37.500 0.00 0.00 43.84 4.08
2199 6708 6.743575 AACTGATTAGTACAGTCCAATTGC 57.256 37.500 0.00 0.00 46.01 3.56
2200 6709 8.099364 ACAAACTGATTAGTACAGTCCAATTG 57.901 34.615 0.00 0.00 46.01 2.32
2201 6710 8.691661 AACAAACTGATTAGTACAGTCCAATT 57.308 30.769 0.00 0.00 46.01 2.32
2202 6711 7.390718 GGAACAAACTGATTAGTACAGTCCAAT 59.609 37.037 0.00 0.00 46.01 3.16
2203 6712 6.708949 GGAACAAACTGATTAGTACAGTCCAA 59.291 38.462 0.00 0.00 46.01 3.53
2204 6713 6.228258 GGAACAAACTGATTAGTACAGTCCA 58.772 40.000 0.00 0.00 46.01 4.02
2205 6714 5.642491 GGGAACAAACTGATTAGTACAGTCC 59.358 44.000 0.00 0.00 46.01 3.85
2206 6715 6.228258 TGGGAACAAACTGATTAGTACAGTC 58.772 40.000 0.00 0.00 40.04 3.51
2207 6716 6.182507 TGGGAACAAACTGATTAGTACAGT 57.817 37.500 0.00 0.00 42.33 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.