Multiple sequence alignment - TraesCS1B01G024600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G024600 chr1B 100.000 4373 0 0 1 4373 11863967 11859595 0.000000e+00 8076.0
1 TraesCS1B01G024600 chr1D 88.642 2606 191 51 787 3339 8717798 8715245 0.000000e+00 3075.0
2 TraesCS1B01G024600 chr1D 91.566 664 34 8 3721 4373 8714812 8714160 0.000000e+00 896.0
3 TraesCS1B01G024600 chr1A 91.582 986 71 9 2383 3363 10070648 10069670 0.000000e+00 1351.0
4 TraesCS1B01G024600 chr1A 87.000 900 77 20 1504 2384 10071623 10070745 0.000000e+00 977.0
5 TraesCS1B01G024600 chr1A 92.749 662 27 11 3721 4373 10069249 10068600 0.000000e+00 937.0
6 TraesCS1B01G024600 chr1A 81.776 653 54 29 825 1441 10072282 10071659 1.830000e-133 486.0
7 TraesCS1B01G024600 chr7B 98.322 715 12 0 1 715 242667404 242666690 0.000000e+00 1254.0
8 TraesCS1B01G024600 chr7B 87.167 639 60 14 1032 1659 60580509 60579882 0.000000e+00 706.0
9 TraesCS1B01G024600 chr7B 84.820 639 73 16 1032 1659 549273387 549272762 4.800000e-174 621.0
10 TraesCS1B01G024600 chr7B 89.574 470 47 2 1 469 624753626 624754094 2.910000e-166 595.0
11 TraesCS1B01G024600 chr2B 94.972 716 35 1 1 715 614413041 614412326 0.000000e+00 1122.0
12 TraesCS1B01G024600 chr2B 94.693 716 37 1 1 715 614307613 614306898 0.000000e+00 1110.0
13 TraesCS1B01G024600 chr6B 90.934 717 57 8 4 715 673855917 673855204 0.000000e+00 957.0
14 TraesCS1B01G024600 chr4D 88.576 639 51 14 1032 1659 115694620 115695247 0.000000e+00 756.0
15 TraesCS1B01G024600 chr4D 88.576 639 51 13 1032 1659 437401197 437400570 0.000000e+00 756.0
16 TraesCS1B01G024600 chr2D 88.106 639 51 15 1032 1659 573296594 573297218 0.000000e+00 736.0
17 TraesCS1B01G024600 chr7A 86.854 639 62 14 1032 1659 114454454 114453827 0.000000e+00 695.0
18 TraesCS1B01G024600 chr7A 86.054 631 63 16 1032 1651 321841651 321841035 0.000000e+00 654.0
19 TraesCS1B01G024600 chr5D 84.000 475 63 11 246 713 339729943 339729475 1.120000e-120 444.0
20 TraesCS1B01G024600 chr3B 88.102 353 34 6 1032 1382 787972889 787973235 3.150000e-111 412.0
21 TraesCS1B01G024600 chr3B 86.076 79 11 0 370 448 387182602 387182680 7.790000e-13 86.1
22 TraesCS1B01G024600 chr3B 100.000 34 0 0 747 780 737782224 737782257 3.650000e-06 63.9
23 TraesCS1B01G024600 chr3D 76.485 404 94 1 31 433 39201714 39201311 7.360000e-53 219.0
24 TraesCS1B01G024600 chr6A 74.468 423 108 0 9 431 122803416 122803838 2.690000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G024600 chr1B 11859595 11863967 4372 True 8076.00 8076 100.00000 1 4373 1 chr1B.!!$R1 4372
1 TraesCS1B01G024600 chr1D 8714160 8717798 3638 True 1985.50 3075 90.10400 787 4373 2 chr1D.!!$R1 3586
2 TraesCS1B01G024600 chr1A 10068600 10072282 3682 True 937.75 1351 88.27675 825 4373 4 chr1A.!!$R1 3548
3 TraesCS1B01G024600 chr7B 242666690 242667404 714 True 1254.00 1254 98.32200 1 715 1 chr7B.!!$R2 714
4 TraesCS1B01G024600 chr7B 60579882 60580509 627 True 706.00 706 87.16700 1032 1659 1 chr7B.!!$R1 627
5 TraesCS1B01G024600 chr7B 549272762 549273387 625 True 621.00 621 84.82000 1032 1659 1 chr7B.!!$R3 627
6 TraesCS1B01G024600 chr2B 614412326 614413041 715 True 1122.00 1122 94.97200 1 715 1 chr2B.!!$R2 714
7 TraesCS1B01G024600 chr2B 614306898 614307613 715 True 1110.00 1110 94.69300 1 715 1 chr2B.!!$R1 714
8 TraesCS1B01G024600 chr6B 673855204 673855917 713 True 957.00 957 90.93400 4 715 1 chr6B.!!$R1 711
9 TraesCS1B01G024600 chr4D 115694620 115695247 627 False 756.00 756 88.57600 1032 1659 1 chr4D.!!$F1 627
10 TraesCS1B01G024600 chr4D 437400570 437401197 627 True 756.00 756 88.57600 1032 1659 1 chr4D.!!$R1 627
11 TraesCS1B01G024600 chr2D 573296594 573297218 624 False 736.00 736 88.10600 1032 1659 1 chr2D.!!$F1 627
12 TraesCS1B01G024600 chr7A 114453827 114454454 627 True 695.00 695 86.85400 1032 1659 1 chr7A.!!$R1 627
13 TraesCS1B01G024600 chr7A 321841035 321841651 616 True 654.00 654 86.05400 1032 1651 1 chr7A.!!$R2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 736 0.179051 GCCTTCCAGAGCTCCATGAG 60.179 60.0 10.93 3.99 0.00 2.90 F
1390 1448 0.392729 ATGGAAGCTCTGCTGTGCTC 60.393 55.0 18.64 12.47 41.50 4.26 F
1426 1487 0.537143 ACTGCGCATTTCAGGTCCAA 60.537 50.0 12.24 0.00 35.94 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2587 2788 0.034059 AAGGGCTATCGCTGGAATCG 59.966 55.000 0.00 0.00 35.49 3.34 R
2755 2956 1.001887 ACGACGAGGAGCCTCTTCT 60.002 57.895 17.59 5.65 38.64 2.85 R
3412 3614 0.823356 GGCAACAACTCTCCTTGGCA 60.823 55.000 0.00 0.00 39.59 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 3.075582 AGATGAGCGTATAGGGGAGGTAA 59.924 47.826 0.00 0.00 0.00 2.85
115 116 0.456824 TCGAGCTGAACAGTCGATGC 60.457 55.000 17.85 1.11 36.68 3.91
168 169 2.125912 CGTCTCCCCTGAAGTGCG 60.126 66.667 0.00 0.00 0.00 5.34
322 323 6.198639 ACCAATACTGAGAGTAGGTCTTGAT 58.801 40.000 0.00 0.00 34.71 2.57
471 472 1.822613 CCATCTGCTTCAGCCGCAT 60.823 57.895 0.00 0.00 41.18 4.73
512 513 2.427506 GACGCCATCTTCAGAAACCTT 58.572 47.619 0.00 0.00 0.00 3.50
640 642 5.192722 TGGGACAAGTGATGGATTGGTAATA 59.807 40.000 0.00 0.00 31.92 0.98
717 719 4.934989 CCTAACGTGAGGGAAGCC 57.065 61.111 11.67 0.00 32.39 4.35
718 720 2.287829 CCTAACGTGAGGGAAGCCT 58.712 57.895 11.67 0.00 32.39 4.58
719 721 0.613777 CCTAACGTGAGGGAAGCCTT 59.386 55.000 11.67 0.00 32.39 4.35
720 722 1.405661 CCTAACGTGAGGGAAGCCTTC 60.406 57.143 11.67 0.00 32.39 3.46
729 731 4.952704 GAAGCCTTCCAGAGCTCC 57.047 61.111 10.93 0.00 38.74 4.70
730 732 1.986413 GAAGCCTTCCAGAGCTCCA 59.014 57.895 10.93 0.00 38.74 3.86
731 733 0.545646 GAAGCCTTCCAGAGCTCCAT 59.454 55.000 10.93 0.00 38.74 3.41
732 734 0.255318 AAGCCTTCCAGAGCTCCATG 59.745 55.000 10.93 2.65 38.74 3.66
733 735 0.619832 AGCCTTCCAGAGCTCCATGA 60.620 55.000 10.93 1.31 32.71 3.07
734 736 0.179051 GCCTTCCAGAGCTCCATGAG 60.179 60.000 10.93 3.99 0.00 2.90
745 747 3.814005 GCTCCATGAGCCAATCATTTT 57.186 42.857 4.75 0.00 46.97 1.82
746 748 4.924305 GCTCCATGAGCCAATCATTTTA 57.076 40.909 4.75 0.00 46.97 1.52
747 749 5.266733 GCTCCATGAGCCAATCATTTTAA 57.733 39.130 4.75 0.00 46.97 1.52
748 750 5.663456 GCTCCATGAGCCAATCATTTTAAA 58.337 37.500 4.75 0.00 46.97 1.52
749 751 6.285990 GCTCCATGAGCCAATCATTTTAAAT 58.714 36.000 4.75 0.00 46.97 1.40
750 752 6.202188 GCTCCATGAGCCAATCATTTTAAATG 59.798 38.462 11.12 11.12 46.97 2.32
751 753 7.185318 TCCATGAGCCAATCATTTTAAATGT 57.815 32.000 16.06 2.93 46.97 2.71
752 754 7.622713 TCCATGAGCCAATCATTTTAAATGTT 58.377 30.769 16.06 6.51 46.97 2.71
753 755 8.756927 TCCATGAGCCAATCATTTTAAATGTTA 58.243 29.630 16.06 0.04 46.97 2.41
754 756 9.381033 CCATGAGCCAATCATTTTAAATGTTAA 57.619 29.630 16.06 0.00 46.97 2.01
775 777 8.564574 TGTTAAAAGTATCTAGCTGTGTTTTGG 58.435 33.333 0.00 0.00 0.00 3.28
776 778 8.565416 GTTAAAAGTATCTAGCTGTGTTTTGGT 58.435 33.333 0.00 0.00 0.00 3.67
777 779 9.781633 TTAAAAGTATCTAGCTGTGTTTTGGTA 57.218 29.630 0.00 0.00 0.00 3.25
778 780 7.668525 AAAGTATCTAGCTGTGTTTTGGTAC 57.331 36.000 0.00 0.00 0.00 3.34
779 781 6.607004 AGTATCTAGCTGTGTTTTGGTACT 57.393 37.500 0.00 0.00 0.00 2.73
780 782 7.005709 AGTATCTAGCTGTGTTTTGGTACTT 57.994 36.000 0.00 0.00 0.00 2.24
781 783 7.450903 AGTATCTAGCTGTGTTTTGGTACTTT 58.549 34.615 0.00 0.00 0.00 2.66
782 784 7.937394 AGTATCTAGCTGTGTTTTGGTACTTTT 59.063 33.333 0.00 0.00 0.00 2.27
783 785 7.582667 ATCTAGCTGTGTTTTGGTACTTTTT 57.417 32.000 0.00 0.00 0.00 1.94
805 807 2.151881 TTTGCATGTGGTGTGAATGC 57.848 45.000 0.00 0.01 45.51 3.56
807 809 3.411808 GCATGTGGTGTGAATGCAG 57.588 52.632 0.00 0.00 44.83 4.41
808 810 0.734942 GCATGTGGTGTGAATGCAGC 60.735 55.000 0.00 0.00 44.83 5.25
809 811 0.455464 CATGTGGTGTGAATGCAGCG 60.455 55.000 0.00 0.00 39.49 5.18
810 812 0.890542 ATGTGGTGTGAATGCAGCGT 60.891 50.000 0.00 0.00 39.49 5.07
812 814 1.086696 GTGGTGTGAATGCAGCGTAT 58.913 50.000 0.00 0.00 39.49 3.06
813 815 1.085893 TGGTGTGAATGCAGCGTATG 58.914 50.000 0.00 0.00 39.49 2.39
822 824 2.793946 CAGCGTATGCAGTTGGGC 59.206 61.111 10.11 0.00 46.23 5.36
861 871 2.597217 CCAGCGCCCAGAACCAAA 60.597 61.111 2.29 0.00 0.00 3.28
875 885 2.717485 CAAATCCGCCATGCCTCG 59.283 61.111 0.00 0.00 0.00 4.63
882 892 1.741401 CGCCATGCCTCGTCAGAAA 60.741 57.895 0.00 0.00 0.00 2.52
883 893 1.298157 CGCCATGCCTCGTCAGAAAA 61.298 55.000 0.00 0.00 0.00 2.29
977 991 2.833582 GCCGACGGGATCCTCTCA 60.834 66.667 17.22 0.00 34.06 3.27
997 1011 1.008938 AGCTCACTCTACCCATTCCCT 59.991 52.381 0.00 0.00 0.00 4.20
998 1012 1.139853 GCTCACTCTACCCATTCCCTG 59.860 57.143 0.00 0.00 0.00 4.45
1000 1014 2.432510 CTCACTCTACCCATTCCCTGAC 59.567 54.545 0.00 0.00 0.00 3.51
1007 1031 2.438434 CATTCCCTGACCCACCGC 60.438 66.667 0.00 0.00 0.00 5.68
1117 1158 3.649277 CTCCTTCCACTCCACCGCG 62.649 68.421 0.00 0.00 0.00 6.46
1145 1186 3.361158 CCAAATCCACGGTGCGCA 61.361 61.111 5.66 5.66 0.00 6.09
1164 1205 1.158007 ACACCCTGACTTTCCCCATT 58.842 50.000 0.00 0.00 0.00 3.16
1177 1218 1.007238 TCCCCATTCGTCTCTTCCTCT 59.993 52.381 0.00 0.00 0.00 3.69
1199 1244 7.607223 CCTCTCTCTTTCTTTTTGTCTGATGAT 59.393 37.037 0.00 0.00 0.00 2.45
1200 1245 8.320396 TCTCTCTTTCTTTTTGTCTGATGATG 57.680 34.615 0.00 0.00 0.00 3.07
1201 1246 8.152898 TCTCTCTTTCTTTTTGTCTGATGATGA 58.847 33.333 0.00 0.00 0.00 2.92
1365 1419 1.130561 GGGTGATTAGTTTGCACGCTC 59.869 52.381 0.00 0.00 40.83 5.03
1382 1440 1.380524 CTCCAGCAATGGAAGCTCTG 58.619 55.000 0.00 0.00 41.14 3.35
1383 1441 0.679002 TCCAGCAATGGAAGCTCTGC 60.679 55.000 0.00 0.00 41.14 4.26
1390 1448 0.392729 ATGGAAGCTCTGCTGTGCTC 60.393 55.000 18.64 12.47 41.50 4.26
1391 1449 1.744741 GGAAGCTCTGCTGTGCTCC 60.745 63.158 18.64 16.51 41.50 4.70
1392 1450 1.004080 GAAGCTCTGCTGTGCTCCA 60.004 57.895 18.64 0.00 41.50 3.86
1398 1456 1.467734 CTCTGCTGTGCTCCACATTTC 59.532 52.381 0.00 0.00 43.71 2.17
1424 1485 1.503542 CACTGCGCATTTCAGGTCC 59.496 57.895 12.24 0.00 35.94 4.46
1426 1487 0.537143 ACTGCGCATTTCAGGTCCAA 60.537 50.000 12.24 0.00 35.94 3.53
1460 1527 6.493458 CGTAATGAAATTGGGGGATCCTTTAT 59.507 38.462 12.58 0.00 36.99 1.40
1467 1534 3.215049 TGGGGGATCCTTTATTTTCCCT 58.785 45.455 12.58 0.00 46.00 4.20
1468 1535 3.052186 TGGGGGATCCTTTATTTTCCCTG 60.052 47.826 12.58 0.00 46.00 4.45
1470 1537 4.326610 GGGGGATCCTTTATTTTCCCTGAA 60.327 45.833 12.58 0.00 46.00 3.02
1473 1540 6.127054 GGGGATCCTTTATTTTCCCTGAAAAG 60.127 42.308 12.58 0.00 46.00 2.27
1474 1541 6.440647 GGGATCCTTTATTTTCCCTGAAAAGT 59.559 38.462 12.58 0.79 43.33 2.66
1475 1542 7.038302 GGGATCCTTTATTTTCCCTGAAAAGTT 60.038 37.037 12.58 0.00 43.33 2.66
1476 1543 7.819415 GGATCCTTTATTTTCCCTGAAAAGTTG 59.181 37.037 3.84 0.12 43.33 3.16
1478 1545 7.951591 TCCTTTATTTTCCCTGAAAAGTTGAG 58.048 34.615 7.89 4.05 43.33 3.02
1480 1547 7.653311 CCTTTATTTTCCCTGAAAAGTTGAGTG 59.347 37.037 7.89 0.00 43.33 3.51
1481 1548 4.385358 TTTTCCCTGAAAAGTTGAGTGC 57.615 40.909 0.00 0.00 36.73 4.40
1482 1549 2.727123 TCCCTGAAAAGTTGAGTGCA 57.273 45.000 0.00 0.00 0.00 4.57
1483 1550 2.297701 TCCCTGAAAAGTTGAGTGCAC 58.702 47.619 9.40 9.40 0.00 4.57
1493 1560 1.699054 TTGAGTGCACTGCCTGAGGT 61.699 55.000 27.27 0.00 0.00 3.85
1577 1649 4.460382 AGCTTGACCATGGTTCTGTAATTG 59.540 41.667 20.85 3.63 0.00 2.32
1639 1711 2.034879 CACCGACGCCAAGAATGCT 61.035 57.895 0.00 0.00 0.00 3.79
1681 1753 1.837499 CGGTCCCTCCCAGGTATCC 60.837 68.421 0.00 0.00 31.93 2.59
1691 1763 2.701951 TCCCAGGTATCCGTAACCATTC 59.298 50.000 0.00 0.00 39.64 2.67
1766 1838 2.117910 GAGAGCGCCGTACTGATTTAC 58.882 52.381 2.29 0.00 0.00 2.01
1789 1861 9.910267 TTACCTACCTGGGAAGATTATAAAAAC 57.090 33.333 0.00 0.00 41.11 2.43
1826 1903 9.838339 CAAATCTTATATACCAAACTCTGAGGT 57.162 33.333 9.85 0.00 39.41 3.85
1885 1966 1.611491 TCACCAAGCGAATGGGAAAAC 59.389 47.619 11.10 0.00 45.18 2.43
1887 1968 1.256812 CCAAGCGAATGGGAAAACCT 58.743 50.000 0.00 0.00 41.11 3.50
1957 2038 6.799926 TTAATTTCTTTGAAAGCATTGCCC 57.200 33.333 4.70 0.00 0.00 5.36
2051 2133 1.609208 ACAAACGAGGCAGCAGAAAT 58.391 45.000 0.00 0.00 0.00 2.17
2065 2147 2.231964 GCAGAAATCTGGTGGCAAATCA 59.768 45.455 12.09 0.00 43.94 2.57
2122 2204 3.190744 GCAAAGGCAGAGGTAAGTTTACC 59.809 47.826 12.19 12.19 45.60 2.85
2131 2213 2.977914 GGTAAGTTTACCCTCGAACCC 58.022 52.381 9.47 0.00 45.94 4.11
2132 2214 2.568956 GGTAAGTTTACCCTCGAACCCT 59.431 50.000 9.47 0.00 45.94 4.34
2133 2215 3.008375 GGTAAGTTTACCCTCGAACCCTT 59.992 47.826 9.47 0.00 45.94 3.95
2169 2251 2.354510 TGCTTGTTTTCACTCAAGACCG 59.645 45.455 8.74 0.00 42.22 4.79
2172 2254 2.557317 TGTTTTCACTCAAGACCGGTC 58.443 47.619 27.67 27.67 0.00 4.79
2176 2258 0.673985 TCACTCAAGACCGGTCTGTG 59.326 55.000 36.87 34.33 40.36 3.66
2187 2269 3.162666 ACCGGTCTGTGTCTTCTGATTA 58.837 45.455 0.00 0.00 0.00 1.75
2199 2281 5.098211 GTCTTCTGATTACCAAAAGCATGC 58.902 41.667 10.51 10.51 0.00 4.06
2356 2451 3.895232 TGACTTGCTAGGTTCATCCTC 57.105 47.619 0.00 0.00 44.42 3.71
2407 2600 6.086319 GCATTTACTTTGATGCACATGAAC 57.914 37.500 0.00 0.00 46.03 3.18
2408 2601 5.865552 GCATTTACTTTGATGCACATGAACT 59.134 36.000 0.00 0.00 46.03 3.01
2500 2701 5.081394 GCGTAAACACCATTTACTTTACGG 58.919 41.667 18.11 5.63 45.86 4.02
2501 2702 5.334028 GCGTAAACACCATTTACTTTACGGT 60.334 40.000 18.11 0.00 45.86 4.83
2522 2723 6.038271 ACGGTCATTTTCAGTATATTTGGAGC 59.962 38.462 0.00 0.00 0.00 4.70
2568 2769 6.155737 ACGTTTTGTATAGGTGGGATAGACTT 59.844 38.462 0.00 0.00 0.00 3.01
2580 2781 4.019321 TGGGATAGACTTGAGGAACTTTGG 60.019 45.833 0.00 0.00 41.55 3.28
2583 2784 5.280011 GGATAGACTTGAGGAACTTTGGTGA 60.280 44.000 0.00 0.00 41.55 4.02
2584 2785 3.809905 AGACTTGAGGAACTTTGGTGAC 58.190 45.455 0.00 0.00 41.55 3.67
2587 2788 2.234300 TGAGGAACTTTGGTGACGAC 57.766 50.000 0.00 0.00 41.55 4.34
2653 2854 3.884704 TACGTGGTACTGGCCCGGT 62.885 63.158 0.00 0.00 0.00 5.28
2707 2908 3.765257 ATGGAGGGAGGAGCCTCGG 62.765 68.421 10.25 0.00 43.59 4.63
2749 2950 2.230508 AGTTTGGAACGAGAGCGATGTA 59.769 45.455 0.00 0.00 41.64 2.29
2752 2953 2.089201 TGGAACGAGAGCGATGTAGAA 58.911 47.619 0.00 0.00 41.64 2.10
2755 2956 3.181499 GGAACGAGAGCGATGTAGAAGAA 60.181 47.826 0.00 0.00 41.64 2.52
2764 2965 3.181480 GCGATGTAGAAGAAGAAGAGGCT 60.181 47.826 0.00 0.00 0.00 4.58
2806 3007 5.669798 AAAGCCATAGAATATCCCTTGGT 57.330 39.130 0.00 0.00 0.00 3.67
2854 3055 5.061064 GCTTGATCATATTAAGTCCGCGTAG 59.939 44.000 4.92 0.00 0.00 3.51
2860 3061 2.927553 TTAAGTCCGCGTAGGTCTTC 57.072 50.000 4.92 0.00 43.30 2.87
2896 3097 8.752254 CATAGCATTTGCAACAATTCTGATAAG 58.248 33.333 0.00 0.00 45.16 1.73
2911 3112 0.109342 ATAAGCGGGCTCCTGATTGG 59.891 55.000 8.39 0.00 32.76 3.16
2928 3129 5.115480 TGATTGGTTTTTCTTTCTTGGTGC 58.885 37.500 0.00 0.00 0.00 5.01
2931 3132 5.257082 TGGTTTTTCTTTCTTGGTGCTAC 57.743 39.130 0.00 0.00 0.00 3.58
3028 3229 2.799562 GCTTGTCTTTGCAACAACCTCC 60.800 50.000 0.00 0.00 33.30 4.30
3132 3333 1.134699 CAGAGGATAAGTTCAGGCGCA 60.135 52.381 10.83 0.00 0.00 6.09
3200 3401 4.509737 GTAGCCGCCGGTCTGGTC 62.510 72.222 4.45 0.00 41.21 4.02
3206 3407 2.747686 GCCGGTCTGGTCCTTGAA 59.252 61.111 1.90 0.00 41.21 2.69
3216 3417 2.036217 CTGGTCCTTGAAAAGCATGCAA 59.964 45.455 21.98 3.64 44.44 4.08
3239 3441 6.775594 AGAATAAGGGGAATTTTCCTTTCG 57.224 37.500 15.43 0.00 46.72 3.46
3240 3442 5.127194 AGAATAAGGGGAATTTTCCTTTCGC 59.873 40.000 15.43 7.81 46.72 4.70
3296 3498 9.528018 TTTCAAAACCAACTGAATGAGTATTTC 57.472 29.630 0.00 0.00 33.09 2.17
3336 3538 2.393646 GTCTGAAGATGAGCCCCTAGT 58.606 52.381 0.00 0.00 0.00 2.57
3346 3548 6.810500 AGATGAGCCCCTAGTAGAAGAATAT 58.189 40.000 0.00 0.00 0.00 1.28
3348 3550 5.716979 TGAGCCCCTAGTAGAAGAATATGT 58.283 41.667 0.00 0.00 0.00 2.29
3353 3555 7.181125 AGCCCCTAGTAGAAGAATATGTAATGG 59.819 40.741 0.00 0.00 0.00 3.16
3354 3556 7.180408 GCCCCTAGTAGAAGAATATGTAATGGA 59.820 40.741 0.00 0.00 0.00 3.41
3355 3557 9.273137 CCCCTAGTAGAAGAATATGTAATGGAT 57.727 37.037 0.00 0.00 0.00 3.41
3366 3568 9.797642 AGAATATGTAATGGATAAATGCAGTCA 57.202 29.630 0.00 0.00 0.00 3.41
3368 3570 9.797642 AATATGTAATGGATAAATGCAGTCAGA 57.202 29.630 0.00 0.00 0.00 3.27
3370 3572 8.701908 ATGTAATGGATAAATGCAGTCAGAAT 57.298 30.769 0.00 0.00 0.00 2.40
3371 3573 7.933396 TGTAATGGATAAATGCAGTCAGAATG 58.067 34.615 0.00 0.00 37.54 2.67
3401 3603 9.868277 TTTTTCTTTTGTTTGACATCACATAGT 57.132 25.926 0.00 0.00 0.00 2.12
3402 3604 9.515020 TTTTCTTTTGTTTGACATCACATAGTC 57.485 29.630 0.00 0.00 35.37 2.59
3403 3605 7.800155 TCTTTTGTTTGACATCACATAGTCA 57.200 32.000 0.00 0.00 42.55 3.41
3404 3606 7.864686 TCTTTTGTTTGACATCACATAGTCAG 58.135 34.615 0.00 0.00 44.65 3.51
3405 3607 7.714813 TCTTTTGTTTGACATCACATAGTCAGA 59.285 33.333 0.00 0.00 44.65 3.27
3406 3608 7.800155 TTTGTTTGACATCACATAGTCAGAA 57.200 32.000 0.00 0.00 44.65 3.02
3407 3609 7.984422 TTGTTTGACATCACATAGTCAGAAT 57.016 32.000 0.00 0.00 44.65 2.40
3408 3610 7.368480 TGTTTGACATCACATAGTCAGAATG 57.632 36.000 0.00 0.00 44.65 2.67
3421 3623 3.063510 TCAGAATGAGTTGCCAAGGAG 57.936 47.619 0.00 0.00 42.56 3.69
3422 3624 2.639347 TCAGAATGAGTTGCCAAGGAGA 59.361 45.455 0.00 0.00 42.56 3.71
3423 3625 3.008330 CAGAATGAGTTGCCAAGGAGAG 58.992 50.000 0.00 0.00 39.69 3.20
3424 3626 2.641815 AGAATGAGTTGCCAAGGAGAGT 59.358 45.455 0.00 0.00 0.00 3.24
3425 3627 3.073650 AGAATGAGTTGCCAAGGAGAGTT 59.926 43.478 0.00 0.00 0.00 3.01
3426 3628 2.260844 TGAGTTGCCAAGGAGAGTTG 57.739 50.000 0.00 0.00 0.00 3.16
3427 3629 1.490490 TGAGTTGCCAAGGAGAGTTGT 59.510 47.619 0.00 0.00 0.00 3.32
3428 3630 2.092429 TGAGTTGCCAAGGAGAGTTGTT 60.092 45.455 0.00 0.00 0.00 2.83
3429 3631 2.291741 GAGTTGCCAAGGAGAGTTGTTG 59.708 50.000 0.00 0.00 0.00 3.33
3430 3632 1.032014 TTGCCAAGGAGAGTTGTTGC 58.968 50.000 0.00 0.00 0.00 4.17
3431 3633 0.823356 TGCCAAGGAGAGTTGTTGCC 60.823 55.000 0.00 0.00 0.00 4.52
3432 3634 0.823356 GCCAAGGAGAGTTGTTGCCA 60.823 55.000 0.00 0.00 0.00 4.92
3433 3635 1.691196 CCAAGGAGAGTTGTTGCCAA 58.309 50.000 0.00 0.00 0.00 4.52
3484 3686 9.974980 GTTTTGAACCAGAGACCAAATTATTTA 57.025 29.630 0.00 0.00 0.00 1.40
3485 3687 9.974980 TTTTGAACCAGAGACCAAATTATTTAC 57.025 29.630 0.00 0.00 0.00 2.01
3487 3689 8.877864 TGAACCAGAGACCAAATTATTTACAT 57.122 30.769 0.00 0.00 0.00 2.29
3505 3707 1.332686 CATGCGTCAGCTAATGCACAT 59.667 47.619 5.72 0.00 43.55 3.21
3507 3709 1.398041 TGCGTCAGCTAATGCACATTC 59.602 47.619 0.00 0.00 45.42 2.67
3508 3710 1.268234 GCGTCAGCTAATGCACATTCC 60.268 52.381 0.00 0.00 42.74 3.01
3509 3711 2.283298 CGTCAGCTAATGCACATTCCT 58.717 47.619 0.00 0.00 42.74 3.36
3510 3712 3.457234 CGTCAGCTAATGCACATTCCTA 58.543 45.455 0.00 0.00 42.74 2.94
3511 3713 3.871006 CGTCAGCTAATGCACATTCCTAA 59.129 43.478 0.00 0.00 42.74 2.69
3512 3714 4.025396 CGTCAGCTAATGCACATTCCTAAG 60.025 45.833 0.00 0.00 42.74 2.18
3513 3715 3.879295 TCAGCTAATGCACATTCCTAAGC 59.121 43.478 0.00 3.68 42.74 3.09
3514 3716 3.004106 CAGCTAATGCACATTCCTAAGCC 59.996 47.826 10.69 0.00 42.74 4.35
3515 3717 2.951642 GCTAATGCACATTCCTAAGCCA 59.048 45.455 0.00 0.00 39.41 4.75
3516 3718 3.381272 GCTAATGCACATTCCTAAGCCAA 59.619 43.478 0.00 0.00 39.41 4.52
3517 3719 4.038402 GCTAATGCACATTCCTAAGCCAAT 59.962 41.667 0.00 0.00 39.41 3.16
3518 3720 4.395959 AATGCACATTCCTAAGCCAATG 57.604 40.909 0.00 0.00 36.28 2.82
3519 3721 1.477700 TGCACATTCCTAAGCCAATGC 59.522 47.619 0.00 0.00 33.92 3.56
3520 3722 6.390006 TAATGCACATTCCTAAGCCAATGCT 61.390 40.000 0.00 0.00 39.83 3.79
3521 3723 8.346782 TAATGCACATTCCTAAGCCAATGCTG 62.347 42.308 0.00 0.00 38.87 4.41
3531 3733 3.618171 CCAATGCTGCTTTTGGCTT 57.382 47.368 17.66 0.00 42.39 4.35
3532 3734 2.747396 CCAATGCTGCTTTTGGCTTA 57.253 45.000 17.66 0.00 42.39 3.09
3533 3735 2.340337 CCAATGCTGCTTTTGGCTTAC 58.660 47.619 17.66 0.00 42.39 2.34
3534 3736 2.028748 CCAATGCTGCTTTTGGCTTACT 60.029 45.455 17.66 0.00 42.39 2.24
3535 3737 2.991190 CAATGCTGCTTTTGGCTTACTG 59.009 45.455 0.00 0.00 42.39 2.74
3536 3738 1.691196 TGCTGCTTTTGGCTTACTGT 58.309 45.000 0.00 0.00 42.39 3.55
3537 3739 1.608590 TGCTGCTTTTGGCTTACTGTC 59.391 47.619 0.00 0.00 42.39 3.51
3538 3740 1.068264 GCTGCTTTTGGCTTACTGTCC 60.068 52.381 0.00 0.00 42.39 4.02
3539 3741 2.229792 CTGCTTTTGGCTTACTGTCCA 58.770 47.619 0.00 0.00 42.39 4.02
3540 3742 2.622942 CTGCTTTTGGCTTACTGTCCAA 59.377 45.455 0.00 0.00 42.39 3.53
3541 3743 3.027412 TGCTTTTGGCTTACTGTCCAAA 58.973 40.909 7.80 7.80 46.98 3.28
3546 3748 4.981806 TTGGCTTACTGTCCAAATATGC 57.018 40.909 0.00 0.00 39.22 3.14
3547 3749 3.287222 TGGCTTACTGTCCAAATATGCC 58.713 45.455 0.00 0.00 38.81 4.40
3548 3750 3.287222 GGCTTACTGTCCAAATATGCCA 58.713 45.455 0.00 0.00 38.43 4.92
3549 3751 3.699038 GGCTTACTGTCCAAATATGCCAA 59.301 43.478 0.00 0.00 38.43 4.52
3550 3752 4.342092 GGCTTACTGTCCAAATATGCCAAT 59.658 41.667 0.00 0.00 38.43 3.16
3551 3753 5.284079 GCTTACTGTCCAAATATGCCAATG 58.716 41.667 0.00 0.00 0.00 2.82
3552 3754 3.806625 ACTGTCCAAATATGCCAATGC 57.193 42.857 0.00 0.00 38.26 3.56
3568 3770 4.201841 GCCAATGCACATTCCAAATAAAGC 60.202 41.667 0.00 0.00 37.47 3.51
3598 3856 6.035327 GCTGCTTTTGGCTTACTATTCAAATG 59.965 38.462 0.00 0.00 42.39 2.32
3599 3857 6.991938 TGCTTTTGGCTTACTATTCAAATGT 58.008 32.000 0.00 0.00 42.39 2.71
3601 3859 7.930865 TGCTTTTGGCTTACTATTCAAATGTTT 59.069 29.630 0.00 0.00 42.39 2.83
3602 3860 8.223100 GCTTTTGGCTTACTATTCAAATGTTTG 58.777 33.333 0.00 0.00 37.46 2.93
3604 3862 6.338214 TGGCTTACTATTCAAATGTTTGCA 57.662 33.333 0.66 0.00 38.05 4.08
3605 3863 6.934056 TGGCTTACTATTCAAATGTTTGCAT 58.066 32.000 0.66 0.00 38.05 3.96
3625 4046 2.736144 TTCGCTCTTGTCCGTAACAT 57.264 45.000 0.00 0.00 37.82 2.71
3626 4047 1.990799 TCGCTCTTGTCCGTAACATG 58.009 50.000 0.00 0.00 37.82 3.21
3627 4048 1.271379 TCGCTCTTGTCCGTAACATGT 59.729 47.619 0.00 0.00 37.82 3.21
3628 4049 2.488937 TCGCTCTTGTCCGTAACATGTA 59.511 45.455 0.00 0.00 37.82 2.29
3629 4050 3.057386 TCGCTCTTGTCCGTAACATGTAA 60.057 43.478 0.00 0.00 37.82 2.41
3630 4051 3.303495 CGCTCTTGTCCGTAACATGTAAG 59.697 47.826 0.00 0.00 37.82 2.34
3631 4052 4.243270 GCTCTTGTCCGTAACATGTAAGT 58.757 43.478 0.00 0.00 37.82 2.24
3632 4053 4.689345 GCTCTTGTCCGTAACATGTAAGTT 59.311 41.667 0.00 0.00 37.82 2.66
3633 4054 5.178809 GCTCTTGTCCGTAACATGTAAGTTT 59.821 40.000 0.00 0.00 37.82 2.66
3634 4055 6.293244 GCTCTTGTCCGTAACATGTAAGTTTT 60.293 38.462 0.00 0.00 37.82 2.43
3635 4056 7.556733 TCTTGTCCGTAACATGTAAGTTTTT 57.443 32.000 0.00 0.00 37.82 1.94
3636 4057 7.632721 TCTTGTCCGTAACATGTAAGTTTTTC 58.367 34.615 0.00 0.00 37.82 2.29
3637 4058 6.922247 TGTCCGTAACATGTAAGTTTTTCA 57.078 33.333 0.00 0.00 31.20 2.69
3638 4059 7.317842 TGTCCGTAACATGTAAGTTTTTCAA 57.682 32.000 0.00 0.00 31.20 2.69
3639 4060 7.759465 TGTCCGTAACATGTAAGTTTTTCAAA 58.241 30.769 0.00 0.00 31.20 2.69
3640 4061 8.242053 TGTCCGTAACATGTAAGTTTTTCAAAA 58.758 29.630 0.00 0.00 31.20 2.44
3641 4062 9.074443 GTCCGTAACATGTAAGTTTTTCAAAAA 57.926 29.630 0.00 0.00 33.07 1.94
3642 4063 9.804758 TCCGTAACATGTAAGTTTTTCAAAAAT 57.195 25.926 0.00 0.00 33.07 1.82
3659 4080 4.612264 AAAATTTGTCAGGCAGCTGAAT 57.388 36.364 20.43 3.04 34.88 2.57
3665 4086 2.224597 TGTCAGGCAGCTGAATCTGAAA 60.225 45.455 25.62 21.02 37.90 2.69
3666 4087 2.419324 GTCAGGCAGCTGAATCTGAAAG 59.581 50.000 25.62 8.02 37.90 2.62
3667 4088 1.132643 CAGGCAGCTGAATCTGAAAGC 59.867 52.381 20.43 0.00 36.19 3.51
3673 4094 2.230750 AGCTGAATCTGAAAGCCAAAGC 59.769 45.455 6.71 0.00 37.68 3.51
3674 4095 6.113421 CAGCTGAATCTGAAAGCCAAAGCT 62.113 45.833 8.42 0.00 43.45 3.74
3689 4110 6.549912 GCCAAAGCTGAATCAGAAAATTTT 57.450 33.333 15.38 2.28 32.44 1.82
3690 4111 6.368213 GCCAAAGCTGAATCAGAAAATTTTG 58.632 36.000 15.38 13.72 32.44 2.44
3691 4112 6.368213 CCAAAGCTGAATCAGAAAATTTTGC 58.632 36.000 15.38 2.89 32.44 3.68
3692 4113 6.017770 CCAAAGCTGAATCAGAAAATTTTGCA 60.018 34.615 15.38 0.00 32.44 4.08
3693 4114 6.535274 AAGCTGAATCAGAAAATTTTGCAC 57.465 33.333 15.38 0.00 32.44 4.57
3694 4115 5.603596 AGCTGAATCAGAAAATTTTGCACA 58.396 33.333 15.38 0.00 32.44 4.57
3695 4116 6.050432 AGCTGAATCAGAAAATTTTGCACAA 58.950 32.000 15.38 0.00 32.44 3.33
3696 4117 6.708949 AGCTGAATCAGAAAATTTTGCACAAT 59.291 30.769 15.38 0.00 32.44 2.71
3697 4118 6.795114 GCTGAATCAGAAAATTTTGCACAATG 59.205 34.615 15.38 0.00 32.44 2.82
3698 4119 7.519328 GCTGAATCAGAAAATTTTGCACAATGT 60.519 33.333 15.38 0.00 32.44 2.71
3699 4120 8.211116 TGAATCAGAAAATTTTGCACAATGTT 57.789 26.923 8.47 0.48 0.00 2.71
3700 4121 8.336806 TGAATCAGAAAATTTTGCACAATGTTC 58.663 29.630 17.32 17.32 32.41 3.18
3701 4122 6.601741 TCAGAAAATTTTGCACAATGTTCC 57.398 33.333 20.15 7.15 32.59 3.62
3702 4123 6.347696 TCAGAAAATTTTGCACAATGTTCCT 58.652 32.000 20.15 8.87 32.59 3.36
3703 4124 7.495901 TCAGAAAATTTTGCACAATGTTCCTA 58.504 30.769 20.15 9.55 32.59 2.94
3704 4125 7.984050 TCAGAAAATTTTGCACAATGTTCCTAA 59.016 29.630 20.15 7.57 32.59 2.69
3705 4126 8.776470 CAGAAAATTTTGCACAATGTTCCTAAT 58.224 29.630 20.15 4.16 32.59 1.73
3706 4127 9.995003 AGAAAATTTTGCACAATGTTCCTAATA 57.005 25.926 20.15 0.00 32.59 0.98
3710 4131 7.650834 TTTTGCACAATGTTCCTAATAAAGC 57.349 32.000 0.00 0.00 0.00 3.51
3711 4132 5.323371 TGCACAATGTTCCTAATAAAGCC 57.677 39.130 0.00 0.00 0.00 4.35
3712 4133 4.769488 TGCACAATGTTCCTAATAAAGCCA 59.231 37.500 0.00 0.00 0.00 4.75
3713 4134 5.244851 TGCACAATGTTCCTAATAAAGCCAA 59.755 36.000 0.00 0.00 0.00 4.52
3714 4135 6.070881 TGCACAATGTTCCTAATAAAGCCAAT 60.071 34.615 0.00 0.00 0.00 3.16
3715 4136 6.256321 GCACAATGTTCCTAATAAAGCCAATG 59.744 38.462 0.00 0.00 0.00 2.82
3716 4137 7.322664 CACAATGTTCCTAATAAAGCCAATGT 58.677 34.615 0.00 0.00 0.00 2.71
3717 4138 7.818930 CACAATGTTCCTAATAAAGCCAATGTT 59.181 33.333 0.00 0.00 0.00 2.71
3718 4139 8.034804 ACAATGTTCCTAATAAAGCCAATGTTC 58.965 33.333 0.00 0.00 0.00 3.18
3719 4140 7.716799 ATGTTCCTAATAAAGCCAATGTTCA 57.283 32.000 0.00 0.00 0.00 3.18
3720 4141 7.156876 TGTTCCTAATAAAGCCAATGTTCAG 57.843 36.000 0.00 0.00 0.00 3.02
3721 4142 6.945435 TGTTCCTAATAAAGCCAATGTTCAGA 59.055 34.615 0.00 0.00 0.00 3.27
3722 4143 7.450014 TGTTCCTAATAAAGCCAATGTTCAGAA 59.550 33.333 0.00 0.00 0.00 3.02
3735 4156 6.639686 CCAATGTTCAGAACACTTTCAGATTG 59.360 38.462 18.49 14.71 45.50 2.67
3746 4167 6.721318 ACACTTTCAGATTGAAGGCCTTATA 58.279 36.000 20.54 9.94 37.01 0.98
3761 4182 4.338400 GGCCTTATAAACCAGTGATGAACC 59.662 45.833 0.00 0.00 0.00 3.62
3772 4193 4.025730 CCAGTGATGAACCGTTGATAATCG 60.026 45.833 0.00 0.00 0.00 3.34
3810 4231 2.159014 TGGATGACCACTGTATAACGCC 60.159 50.000 0.00 0.00 41.77 5.68
3853 4276 4.731313 AATTTACCATGATCCTCCCCTC 57.269 45.455 0.00 0.00 0.00 4.30
3858 4281 2.130193 CCATGATCCTCCCCTCAAAGA 58.870 52.381 0.00 0.00 0.00 2.52
3867 4294 8.565239 TGATCCTCCCCTCAAAGAAATAATAAA 58.435 33.333 0.00 0.00 0.00 1.40
3868 4295 9.072375 GATCCTCCCCTCAAAGAAATAATAAAG 57.928 37.037 0.00 0.00 0.00 1.85
3869 4296 8.170121 TCCTCCCCTCAAAGAAATAATAAAGA 57.830 34.615 0.00 0.00 0.00 2.52
3870 4297 8.791749 TCCTCCCCTCAAAGAAATAATAAAGAT 58.208 33.333 0.00 0.00 0.00 2.40
3959 4388 6.319658 AGTTTGACAACTGATCTCACAAACAT 59.680 34.615 17.97 7.30 42.05 2.71
4002 4431 9.534565 AACATAGATATAGTGTACTTGCACTTG 57.465 33.333 5.24 0.00 46.45 3.16
4003 4432 7.653713 ACATAGATATAGTGTACTTGCACTTGC 59.346 37.037 5.24 0.00 46.45 4.01
4004 4433 5.977635 AGATATAGTGTACTTGCACTTGCA 58.022 37.500 5.24 0.00 46.45 4.08
4035 4464 0.458025 GAGCCGCCACGTATATAGGC 60.458 60.000 3.82 3.82 44.89 3.93
4153 4582 1.344942 CTAGATGATAACGGCGGCGC 61.345 60.000 32.57 26.17 0.00 6.53
4217 4646 0.029567 GGCCAGACTCGTCATACTCG 59.970 60.000 0.00 0.00 0.00 4.18
4283 4712 5.125417 ACATATTTCAGATGTTGGTTTCGGG 59.875 40.000 0.00 0.00 33.70 5.14
4294 4729 0.037734 GGTTTCGGGTCAGATGGGTT 59.962 55.000 0.00 0.00 0.00 4.11
4295 4730 1.279846 GGTTTCGGGTCAGATGGGTTA 59.720 52.381 0.00 0.00 0.00 2.85
4298 4733 4.377897 GTTTCGGGTCAGATGGGTTATAG 58.622 47.826 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 3.574614 CCTTACGATGGTTTGGCAAAAG 58.425 45.455 15.29 5.67 0.00 2.27
322 323 2.095263 GCGCTTGCAAAGGTGAATTCTA 60.095 45.455 7.05 0.00 46.35 2.10
569 570 3.118334 CCTTCTGATCTCTTGGCTGTGAT 60.118 47.826 0.00 0.00 0.00 3.06
640 642 0.326618 ACCATCGTCCCCATCCTCTT 60.327 55.000 0.00 0.00 0.00 2.85
715 717 0.179051 CTCATGGAGCTCTGGAAGGC 60.179 60.000 14.64 0.00 0.00 4.35
726 728 7.270047 ACATTTAAAATGATTGGCTCATGGAG 58.730 34.615 0.00 0.00 44.03 3.86
727 729 7.185318 ACATTTAAAATGATTGGCTCATGGA 57.815 32.000 0.00 0.00 44.03 3.41
728 730 7.852971 AACATTTAAAATGATTGGCTCATGG 57.147 32.000 0.00 0.00 44.03 3.66
749 751 8.564574 CCAAAACACAGCTAGATACTTTTAACA 58.435 33.333 0.00 0.00 0.00 2.41
750 752 8.565416 ACCAAAACACAGCTAGATACTTTTAAC 58.435 33.333 0.00 0.00 0.00 2.01
751 753 8.685838 ACCAAAACACAGCTAGATACTTTTAA 57.314 30.769 0.00 0.00 0.00 1.52
752 754 9.211485 GTACCAAAACACAGCTAGATACTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
753 755 7.937394 AGTACCAAAACACAGCTAGATACTTTT 59.063 33.333 0.00 0.00 0.00 2.27
754 756 7.450903 AGTACCAAAACACAGCTAGATACTTT 58.549 34.615 0.00 0.00 0.00 2.66
755 757 7.005709 AGTACCAAAACACAGCTAGATACTT 57.994 36.000 0.00 0.00 0.00 2.24
756 758 6.607004 AGTACCAAAACACAGCTAGATACT 57.393 37.500 0.00 0.00 0.00 2.12
757 759 7.668525 AAAGTACCAAAACACAGCTAGATAC 57.331 36.000 0.00 0.00 0.00 2.24
758 760 8.685838 AAAAAGTACCAAAACACAGCTAGATA 57.314 30.769 0.00 0.00 0.00 1.98
759 761 7.582667 AAAAAGTACCAAAACACAGCTAGAT 57.417 32.000 0.00 0.00 0.00 1.98
784 786 2.871022 GCATTCACACCACATGCAAAAA 59.129 40.909 0.00 0.00 42.49 1.94
785 787 2.481854 GCATTCACACCACATGCAAAA 58.518 42.857 0.00 0.00 42.49 2.44
805 807 2.764314 GGCCCAACTGCATACGCTG 61.764 63.158 0.00 0.00 42.42 5.18
806 808 2.438434 GGCCCAACTGCATACGCT 60.438 61.111 0.00 0.00 39.64 5.07
807 809 2.749839 TGGCCCAACTGCATACGC 60.750 61.111 0.00 0.00 39.24 4.42
808 810 2.114670 CCTGGCCCAACTGCATACG 61.115 63.158 0.00 0.00 0.00 3.06
809 811 2.418083 GCCTGGCCCAACTGCATAC 61.418 63.158 7.66 0.00 0.00 2.39
810 812 2.044053 GCCTGGCCCAACTGCATA 60.044 61.111 7.66 0.00 0.00 3.14
822 824 2.587322 TTTCTATCGCGTGGGCCTGG 62.587 60.000 5.77 0.00 35.02 4.45
861 871 3.451556 CTGACGAGGCATGGCGGAT 62.452 63.158 14.30 2.54 0.00 4.18
891 901 0.392998 CACTGAGGGGATTGGTTCGG 60.393 60.000 0.00 0.00 0.00 4.30
924 938 1.794714 GGGAGAGGTAGATCAAGGCA 58.205 55.000 0.00 0.00 0.00 4.75
977 991 1.008938 AGGGAATGGGTAGAGTGAGCT 59.991 52.381 0.00 0.00 0.00 4.09
1093 1134 2.726351 GGAGTGGAAGGAGGAGGCG 61.726 68.421 0.00 0.00 0.00 5.52
1096 1137 1.608717 CGGTGGAGTGGAAGGAGGAG 61.609 65.000 0.00 0.00 0.00 3.69
1097 1138 1.609501 CGGTGGAGTGGAAGGAGGA 60.610 63.158 0.00 0.00 0.00 3.71
1098 1139 2.982130 CGGTGGAGTGGAAGGAGG 59.018 66.667 0.00 0.00 0.00 4.30
1099 1140 2.266055 GCGGTGGAGTGGAAGGAG 59.734 66.667 0.00 0.00 0.00 3.69
1117 1158 3.577313 GATTTGGAGAGCGCCGCC 61.577 66.667 4.98 7.83 35.05 6.13
1145 1186 1.075536 GAATGGGGAAAGTCAGGGTGT 59.924 52.381 0.00 0.00 0.00 4.16
1164 1205 4.295141 AGAAAGAGAGAGGAAGAGACGA 57.705 45.455 0.00 0.00 0.00 4.20
1177 1218 8.727910 CATCATCATCAGACAAAAAGAAAGAGA 58.272 33.333 0.00 0.00 0.00 3.10
1199 1244 3.534554 CGTGGATCCAACTGATTCATCA 58.465 45.455 18.20 0.00 41.13 3.07
1200 1245 2.289002 GCGTGGATCCAACTGATTCATC 59.711 50.000 18.20 0.00 41.13 2.92
1201 1246 2.292267 GCGTGGATCCAACTGATTCAT 58.708 47.619 18.20 0.00 41.13 2.57
1212 1257 0.107703 TGAACTGGATGCGTGGATCC 60.108 55.000 12.95 12.95 42.23 3.36
1365 1419 0.680280 AGCAGAGCTTCCATTGCTGG 60.680 55.000 8.99 0.00 44.58 4.85
1390 1448 2.430465 CAGTGGACCTGAGAAATGTGG 58.570 52.381 0.00 0.00 44.49 4.17
1391 1449 1.808945 GCAGTGGACCTGAGAAATGTG 59.191 52.381 0.00 0.00 44.49 3.21
1392 1450 1.609061 CGCAGTGGACCTGAGAAATGT 60.609 52.381 0.00 0.00 44.49 2.71
1398 1456 0.957395 AAATGCGCAGTGGACCTGAG 60.957 55.000 18.32 0.00 44.49 3.35
1412 1473 4.525912 AATTGAGTTGGACCTGAAATGC 57.474 40.909 0.00 0.00 0.00 3.56
1460 1527 3.766591 TGCACTCAACTTTTCAGGGAAAA 59.233 39.130 4.31 4.31 38.90 2.29
1467 1534 1.405105 GGCAGTGCACTCAACTTTTCA 59.595 47.619 18.64 0.00 0.00 2.69
1468 1535 1.678101 AGGCAGTGCACTCAACTTTTC 59.322 47.619 18.64 0.56 0.00 2.29
1470 1537 1.027357 CAGGCAGTGCACTCAACTTT 58.973 50.000 18.64 0.00 0.00 2.66
1473 1540 1.233285 CCTCAGGCAGTGCACTCAAC 61.233 60.000 18.64 10.14 0.00 3.18
1474 1541 1.071987 CCTCAGGCAGTGCACTCAA 59.928 57.895 18.64 0.00 0.00 3.02
1475 1542 2.104572 GACCTCAGGCAGTGCACTCA 62.105 60.000 18.64 0.00 0.00 3.41
1476 1543 1.375268 GACCTCAGGCAGTGCACTC 60.375 63.158 18.64 11.89 0.00 3.51
1478 1545 1.072159 AAGACCTCAGGCAGTGCAC 59.928 57.895 18.61 9.40 0.00 4.57
1480 1547 2.331132 GCAAGACCTCAGGCAGTGC 61.331 63.158 6.55 6.55 0.00 4.40
1481 1548 1.673665 GGCAAGACCTCAGGCAGTG 60.674 63.158 0.00 0.00 34.51 3.66
1482 1549 1.708993 TTGGCAAGACCTCAGGCAGT 61.709 55.000 0.00 0.00 39.08 4.40
1483 1550 0.538057 TTTGGCAAGACCTCAGGCAG 60.538 55.000 0.00 0.00 39.08 4.85
1577 1649 1.084370 ATACGAGGCTGCGCAAGAAC 61.084 55.000 13.05 1.42 43.02 3.01
1639 1711 5.121768 GCCGTTAAGCAGAATGTTCTTAAGA 59.878 40.000 0.00 0.00 39.31 2.10
1706 1778 9.657419 CTCATAAACCAGGAAGCAAAATAAATT 57.343 29.630 0.00 0.00 0.00 1.82
1711 1783 4.774200 AGCTCATAAACCAGGAAGCAAAAT 59.226 37.500 0.00 0.00 0.00 1.82
1712 1784 4.151883 AGCTCATAAACCAGGAAGCAAAA 58.848 39.130 0.00 0.00 0.00 2.44
1713 1785 3.766545 AGCTCATAAACCAGGAAGCAAA 58.233 40.909 0.00 0.00 0.00 3.68
1716 1788 3.084786 ACAAGCTCATAAACCAGGAAGC 58.915 45.455 0.00 0.00 0.00 3.86
1755 1827 5.659971 TCTTCCCAGGTAGGTAAATCAGTAC 59.340 44.000 0.00 0.00 34.66 2.73
1766 1838 8.996651 ATGTTTTTATAATCTTCCCAGGTAGG 57.003 34.615 0.00 0.00 37.03 3.18
1820 1897 5.694006 CAGTCACAGTTAAAGAGAACCTCAG 59.306 44.000 0.00 0.00 32.06 3.35
1826 1903 5.105106 TGTCACCAGTCACAGTTAAAGAGAA 60.105 40.000 0.00 0.00 0.00 2.87
1885 1966 2.023741 GCATTGTCGCGCATCAGG 59.976 61.111 8.75 3.46 0.00 3.86
1887 1968 1.153469 TAGGCATTGTCGCGCATCA 60.153 52.632 8.75 2.22 0.00 3.07
2051 2133 2.627699 GGACTTTTGATTTGCCACCAGA 59.372 45.455 0.00 0.00 0.00 3.86
2122 2204 3.597255 GAAGGTAAAGAAGGGTTCGAGG 58.403 50.000 0.00 0.00 34.02 4.63
2131 2213 6.089249 ACAAGCAATTGGAAGGTAAAGAAG 57.911 37.500 7.72 0.00 0.00 2.85
2132 2214 6.478512 AACAAGCAATTGGAAGGTAAAGAA 57.521 33.333 7.72 0.00 0.00 2.52
2133 2215 6.478512 AAACAAGCAATTGGAAGGTAAAGA 57.521 33.333 7.72 0.00 0.00 2.52
2169 2251 4.537135 TGGTAATCAGAAGACACAGACC 57.463 45.455 0.00 0.00 0.00 3.85
2172 2254 5.239306 TGCTTTTGGTAATCAGAAGACACAG 59.761 40.000 0.00 0.00 39.22 3.66
2176 2258 5.098211 GCATGCTTTTGGTAATCAGAAGAC 58.902 41.667 11.37 0.00 39.22 3.01
2187 2269 1.940752 GCATTTCCGCATGCTTTTGGT 60.941 47.619 17.13 0.00 45.35 3.67
2199 2281 2.046313 GCTCATATTTGCGCATTTCCG 58.954 47.619 12.75 0.00 33.71 4.30
2437 2636 6.963322 AGCTATGGTCCAAAAAGAGTTAGAT 58.037 36.000 0.00 0.00 0.00 1.98
2439 2638 8.738645 ATAAGCTATGGTCCAAAAAGAGTTAG 57.261 34.615 0.00 0.00 0.00 2.34
2466 2667 6.821031 ATGGTGTTTACGCATTTAAAGGTA 57.179 33.333 1.37 0.00 0.00 3.08
2467 2668 5.715434 ATGGTGTTTACGCATTTAAAGGT 57.285 34.783 1.37 0.00 0.00 3.50
2500 2701 6.907212 CGTGCTCCAAATATACTGAAAATGAC 59.093 38.462 0.00 0.00 0.00 3.06
2501 2702 6.821160 TCGTGCTCCAAATATACTGAAAATGA 59.179 34.615 0.00 0.00 0.00 2.57
2522 2723 2.741517 TCATGGTGCACTTGTTATCGTG 59.258 45.455 17.98 9.62 0.00 4.35
2568 2769 1.537348 CGTCGTCACCAAAGTTCCTCA 60.537 52.381 0.00 0.00 0.00 3.86
2580 2781 0.525668 ATCGCTGGAATCGTCGTCAC 60.526 55.000 0.00 0.00 0.00 3.67
2583 2784 0.317938 GCTATCGCTGGAATCGTCGT 60.318 55.000 0.00 0.00 0.00 4.34
2584 2785 1.004277 GGCTATCGCTGGAATCGTCG 61.004 60.000 0.00 0.00 36.09 5.12
2587 2788 0.034059 AAGGGCTATCGCTGGAATCG 59.966 55.000 0.00 0.00 35.49 3.34
2653 2854 1.577729 AGGTCATCATCCTCCTCCTCA 59.422 52.381 0.00 0.00 0.00 3.86
2707 2908 3.378911 TTTTCCCTTGATTTGTTCGGC 57.621 42.857 0.00 0.00 0.00 5.54
2749 2950 2.099405 CGAGGAGCCTCTTCTTCTTCT 58.901 52.381 14.19 0.00 40.69 2.85
2752 2953 1.470051 GACGAGGAGCCTCTTCTTCT 58.530 55.000 14.19 0.00 40.69 2.85
2755 2956 1.001887 ACGACGAGGAGCCTCTTCT 60.002 57.895 17.59 5.65 38.64 2.85
2854 3055 2.609244 GCTATGGAGATGCTCGAAGACC 60.609 54.545 0.00 0.00 0.00 3.85
2860 3061 2.095869 GCAAATGCTATGGAGATGCTCG 60.096 50.000 0.00 0.00 38.21 5.03
2896 3097 1.250840 AAAACCAATCAGGAGCCCGC 61.251 55.000 0.00 0.00 41.22 6.13
2911 3112 4.916870 ACGTAGCACCAAGAAAGAAAAAC 58.083 39.130 0.00 0.00 0.00 2.43
2928 3129 2.560896 GCGAAAACTGCAGAAACGTAG 58.439 47.619 23.35 6.38 0.00 3.51
2931 3132 1.588305 GCGCGAAAACTGCAGAAACG 61.588 55.000 23.35 19.40 0.00 3.60
3132 3333 2.078914 CGTTGTACGCTTCGACGCT 61.079 57.895 12.41 2.04 36.22 5.07
3200 3401 5.579511 CCTTATTCTTGCATGCTTTTCAAGG 59.420 40.000 20.33 18.31 38.13 3.61
3206 3407 3.711863 TCCCCTTATTCTTGCATGCTTT 58.288 40.909 20.33 1.61 0.00 3.51
3287 3489 5.072040 TGAATCTGAGCACGAAATACTCA 57.928 39.130 0.00 0.00 38.09 3.41
3288 3490 5.750547 TGATGAATCTGAGCACGAAATACTC 59.249 40.000 0.00 0.00 0.00 2.59
3296 3498 1.579698 CCCTGATGAATCTGAGCACG 58.420 55.000 0.00 0.00 0.00 5.34
3346 3548 7.774625 TCATTCTGACTGCATTTATCCATTACA 59.225 33.333 0.00 0.00 0.00 2.41
3348 3550 7.994911 ACTCATTCTGACTGCATTTATCCATTA 59.005 33.333 0.00 0.00 0.00 1.90
3353 3555 8.976986 AAAAACTCATTCTGACTGCATTTATC 57.023 30.769 0.00 0.00 0.00 1.75
3375 3577 9.868277 ACTATGTGATGTCAAACAAAAGAAAAA 57.132 25.926 9.74 0.00 0.00 1.94
3376 3578 9.515020 GACTATGTGATGTCAAACAAAAGAAAA 57.485 29.630 9.74 0.00 33.75 2.29
3377 3579 8.681806 TGACTATGTGATGTCAAACAAAAGAAA 58.318 29.630 0.00 0.00 39.82 2.52
3380 3582 7.864686 TCTGACTATGTGATGTCAAACAAAAG 58.135 34.615 0.00 1.31 41.80 2.27
3381 3583 7.800155 TCTGACTATGTGATGTCAAACAAAA 57.200 32.000 0.00 0.00 41.80 2.44
3384 3586 7.160726 TCATTCTGACTATGTGATGTCAAACA 58.839 34.615 0.00 0.00 41.80 2.83
3385 3587 7.332926 ACTCATTCTGACTATGTGATGTCAAAC 59.667 37.037 0.00 0.00 41.80 2.93
3391 3593 5.007430 GGCAACTCATTCTGACTATGTGATG 59.993 44.000 0.00 0.00 0.00 3.07
3392 3594 5.121811 GGCAACTCATTCTGACTATGTGAT 58.878 41.667 0.00 0.00 0.00 3.06
3394 3596 4.256110 TGGCAACTCATTCTGACTATGTG 58.744 43.478 0.00 0.00 37.61 3.21
3395 3597 4.558226 TGGCAACTCATTCTGACTATGT 57.442 40.909 0.00 0.00 37.61 2.29
3396 3598 4.334759 CCTTGGCAACTCATTCTGACTATG 59.665 45.833 0.00 0.00 37.61 2.23
3398 3600 3.582647 TCCTTGGCAACTCATTCTGACTA 59.417 43.478 0.00 0.00 37.61 2.59
3399 3601 2.373169 TCCTTGGCAACTCATTCTGACT 59.627 45.455 0.00 0.00 37.61 3.41
3400 3602 2.746362 CTCCTTGGCAACTCATTCTGAC 59.254 50.000 0.00 0.00 37.61 3.51
3401 3603 2.639347 TCTCCTTGGCAACTCATTCTGA 59.361 45.455 0.00 0.00 37.61 3.27
3402 3604 3.008330 CTCTCCTTGGCAACTCATTCTG 58.992 50.000 0.00 0.00 37.61 3.02
3403 3605 2.641815 ACTCTCCTTGGCAACTCATTCT 59.358 45.455 0.00 0.00 37.61 2.40
3404 3606 3.064900 ACTCTCCTTGGCAACTCATTC 57.935 47.619 0.00 0.00 37.61 2.67
3405 3607 3.152341 CAACTCTCCTTGGCAACTCATT 58.848 45.455 0.00 0.00 37.61 2.57
3406 3608 2.107204 ACAACTCTCCTTGGCAACTCAT 59.893 45.455 0.00 0.00 37.61 2.90
3407 3609 1.490490 ACAACTCTCCTTGGCAACTCA 59.510 47.619 0.00 0.00 37.61 3.41
3408 3610 2.262423 ACAACTCTCCTTGGCAACTC 57.738 50.000 0.00 0.00 37.61 3.01
3409 3611 2.301346 CAACAACTCTCCTTGGCAACT 58.699 47.619 0.00 0.00 37.61 3.16
3410 3612 1.269257 GCAACAACTCTCCTTGGCAAC 60.269 52.381 0.00 0.00 0.00 4.17
3411 3613 1.032014 GCAACAACTCTCCTTGGCAA 58.968 50.000 0.00 0.00 0.00 4.52
3412 3614 0.823356 GGCAACAACTCTCCTTGGCA 60.823 55.000 0.00 0.00 39.59 4.92
3413 3615 1.959848 GGCAACAACTCTCCTTGGC 59.040 57.895 0.00 0.00 33.86 4.52
3426 3628 1.547372 ACATGAATGCTCCTTGGCAAC 59.453 47.619 0.00 0.00 45.68 4.17
3427 3629 1.927487 ACATGAATGCTCCTTGGCAA 58.073 45.000 0.00 0.00 45.68 4.52
3428 3630 2.804986 TACATGAATGCTCCTTGGCA 57.195 45.000 0.00 0.00 46.63 4.92
3429 3631 5.972107 ATATTACATGAATGCTCCTTGGC 57.028 39.130 0.00 0.00 0.00 4.52
3430 3632 9.671279 TGTATATATTACATGAATGCTCCTTGG 57.329 33.333 0.00 0.00 0.00 3.61
3458 3660 8.887036 AAATAATTTGGTCTCTGGTTCAAAAC 57.113 30.769 0.00 0.00 33.62 2.43
3471 3673 5.455525 GCTGACGCATGTAAATAATTTGGTC 59.544 40.000 0.00 0.00 35.78 4.02
3472 3674 5.125417 AGCTGACGCATGTAAATAATTTGGT 59.875 36.000 0.00 0.00 39.10 3.67
3473 3675 5.581605 AGCTGACGCATGTAAATAATTTGG 58.418 37.500 0.00 0.00 39.10 3.28
3484 3686 0.729116 GTGCATTAGCTGACGCATGT 59.271 50.000 1.59 0.00 42.74 3.21
3485 3687 0.728542 TGTGCATTAGCTGACGCATG 59.271 50.000 1.59 0.00 42.74 4.06
3487 3689 1.398041 GAATGTGCATTAGCTGACGCA 59.602 47.619 0.00 0.00 42.74 5.24
3525 3727 3.699038 GGCATATTTGGACAGTAAGCCAA 59.301 43.478 0.00 0.00 42.11 4.52
3526 3728 3.287222 GGCATATTTGGACAGTAAGCCA 58.713 45.455 0.00 0.00 39.35 4.75
3527 3729 3.287222 TGGCATATTTGGACAGTAAGCC 58.713 45.455 0.00 0.00 39.95 4.35
3528 3730 4.981806 TTGGCATATTTGGACAGTAAGC 57.018 40.909 0.00 0.00 0.00 3.09
3529 3731 5.284079 GCATTGGCATATTTGGACAGTAAG 58.716 41.667 0.00 0.00 40.72 2.34
3530 3732 5.261209 GCATTGGCATATTTGGACAGTAA 57.739 39.130 0.00 0.00 40.72 2.24
3531 3733 4.916983 GCATTGGCATATTTGGACAGTA 57.083 40.909 0.00 0.00 40.72 2.74
3532 3734 3.806625 GCATTGGCATATTTGGACAGT 57.193 42.857 0.00 0.00 40.72 3.55
3545 3747 4.201841 GCTTTATTTGGAATGTGCATTGGC 60.202 41.667 1.77 0.00 41.68 4.52
3546 3748 4.333372 GGCTTTATTTGGAATGTGCATTGG 59.667 41.667 1.77 0.00 0.00 3.16
3547 3749 4.936411 TGGCTTTATTTGGAATGTGCATTG 59.064 37.500 1.77 0.00 0.00 2.82
3548 3750 5.163281 TGGCTTTATTTGGAATGTGCATT 57.837 34.783 0.00 0.00 0.00 3.56
3549 3751 4.822685 TGGCTTTATTTGGAATGTGCAT 57.177 36.364 0.00 0.00 0.00 3.96
3550 3752 4.613925 TTGGCTTTATTTGGAATGTGCA 57.386 36.364 0.00 0.00 0.00 4.57
3551 3753 4.201841 GCATTGGCTTTATTTGGAATGTGC 60.202 41.667 0.00 0.00 36.96 4.57
3552 3754 5.473796 GCATTGGCTTTATTTGGAATGTG 57.526 39.130 0.00 0.00 36.96 3.21
3602 3860 1.355971 TACGGACAAGAGCGAAATGC 58.644 50.000 0.00 0.00 46.98 3.56
3604 3862 3.034721 TGTTACGGACAAGAGCGAAAT 57.965 42.857 0.00 0.00 34.69 2.17
3605 3863 2.512485 TGTTACGGACAAGAGCGAAA 57.488 45.000 0.00 0.00 34.69 3.46
3607 3865 1.271379 ACATGTTACGGACAAGAGCGA 59.729 47.619 0.00 0.00 42.62 4.93
3608 3866 1.710013 ACATGTTACGGACAAGAGCG 58.290 50.000 0.00 0.00 42.62 5.03
3609 3867 4.243270 ACTTACATGTTACGGACAAGAGC 58.757 43.478 2.30 0.00 42.62 4.09
3611 3869 7.280428 TGAAAAACTTACATGTTACGGACAAGA 59.720 33.333 2.30 0.00 42.62 3.02
3612 3870 7.411274 TGAAAAACTTACATGTTACGGACAAG 58.589 34.615 2.30 1.85 42.62 3.16
3625 4046 8.447053 GCCTGACAAATTTTTGAAAAACTTACA 58.553 29.630 5.08 4.77 40.55 2.41
3626 4047 8.447053 TGCCTGACAAATTTTTGAAAAACTTAC 58.553 29.630 5.08 0.58 40.55 2.34
3627 4048 8.553459 TGCCTGACAAATTTTTGAAAAACTTA 57.447 26.923 5.08 0.00 40.55 2.24
3628 4049 7.446001 TGCCTGACAAATTTTTGAAAAACTT 57.554 28.000 5.08 0.00 40.55 2.66
3629 4050 6.403527 GCTGCCTGACAAATTTTTGAAAAACT 60.404 34.615 5.08 0.00 40.55 2.66
3630 4051 5.738693 GCTGCCTGACAAATTTTTGAAAAAC 59.261 36.000 5.08 0.00 40.55 2.43
3631 4052 5.647225 AGCTGCCTGACAAATTTTTGAAAAA 59.353 32.000 5.47 5.47 40.55 1.94
3632 4053 5.064962 CAGCTGCCTGACAAATTTTTGAAAA 59.935 36.000 0.00 0.00 41.77 2.29
3633 4054 4.571580 CAGCTGCCTGACAAATTTTTGAAA 59.428 37.500 0.00 0.00 41.77 2.69
3634 4055 4.121317 CAGCTGCCTGACAAATTTTTGAA 58.879 39.130 0.00 0.00 41.77 2.69
3635 4056 3.384146 TCAGCTGCCTGACAAATTTTTGA 59.616 39.130 9.47 0.00 42.98 2.69
3636 4057 3.719924 TCAGCTGCCTGACAAATTTTTG 58.280 40.909 9.47 1.56 42.98 2.44
3666 4087 6.368213 CAAAATTTTCTGATTCAGCTTTGGC 58.632 36.000 8.89 0.00 39.06 4.52
3667 4088 6.017770 TGCAAAATTTTCTGATTCAGCTTTGG 60.018 34.615 8.89 5.23 0.00 3.28
3673 4094 7.857569 ACATTGTGCAAAATTTTCTGATTCAG 58.142 30.769 7.38 7.38 0.00 3.02
3674 4095 7.789273 ACATTGTGCAAAATTTTCTGATTCA 57.211 28.000 0.00 0.00 0.00 2.57
3675 4096 7.799914 GGAACATTGTGCAAAATTTTCTGATTC 59.200 33.333 21.98 7.04 30.43 2.52
3676 4097 7.499895 AGGAACATTGTGCAAAATTTTCTGATT 59.500 29.630 21.98 8.23 30.43 2.57
3677 4098 6.993902 AGGAACATTGTGCAAAATTTTCTGAT 59.006 30.769 21.98 10.35 30.43 2.90
3678 4099 6.347696 AGGAACATTGTGCAAAATTTTCTGA 58.652 32.000 21.98 0.00 30.43 3.27
3679 4100 6.607735 AGGAACATTGTGCAAAATTTTCTG 57.392 33.333 21.98 6.97 30.43 3.02
3684 4105 8.720562 GCTTTATTAGGAACATTGTGCAAAATT 58.279 29.630 0.00 0.00 0.00 1.82
3685 4106 7.334171 GGCTTTATTAGGAACATTGTGCAAAAT 59.666 33.333 0.00 0.00 0.00 1.82
3686 4107 6.648725 GGCTTTATTAGGAACATTGTGCAAAA 59.351 34.615 0.00 0.00 0.00 2.44
3687 4108 6.162777 GGCTTTATTAGGAACATTGTGCAAA 58.837 36.000 0.00 0.00 0.00 3.68
3688 4109 5.244851 TGGCTTTATTAGGAACATTGTGCAA 59.755 36.000 0.00 0.00 0.00 4.08
3689 4110 4.769488 TGGCTTTATTAGGAACATTGTGCA 59.231 37.500 0.00 0.00 0.00 4.57
3690 4111 5.323371 TGGCTTTATTAGGAACATTGTGC 57.677 39.130 0.00 0.00 0.00 4.57
3691 4112 7.322664 ACATTGGCTTTATTAGGAACATTGTG 58.677 34.615 0.00 0.00 0.00 3.33
3692 4113 7.480760 ACATTGGCTTTATTAGGAACATTGT 57.519 32.000 0.00 0.00 0.00 2.71
3693 4114 8.034215 TGAACATTGGCTTTATTAGGAACATTG 58.966 33.333 0.00 0.00 0.00 2.82
3694 4115 8.133024 TGAACATTGGCTTTATTAGGAACATT 57.867 30.769 0.00 0.00 0.00 2.71
3695 4116 7.615365 TCTGAACATTGGCTTTATTAGGAACAT 59.385 33.333 0.00 0.00 0.00 2.71
3696 4117 6.945435 TCTGAACATTGGCTTTATTAGGAACA 59.055 34.615 0.00 0.00 0.00 3.18
3697 4118 7.391148 TCTGAACATTGGCTTTATTAGGAAC 57.609 36.000 0.00 0.00 0.00 3.62
3698 4119 7.450014 TGTTCTGAACATTGGCTTTATTAGGAA 59.550 33.333 18.69 0.00 36.25 3.36
3699 4120 6.945435 TGTTCTGAACATTGGCTTTATTAGGA 59.055 34.615 18.69 0.00 36.25 2.94
3700 4121 7.029563 GTGTTCTGAACATTGGCTTTATTAGG 58.970 38.462 24.44 0.00 44.35 2.69
3701 4122 7.820648 AGTGTTCTGAACATTGGCTTTATTAG 58.179 34.615 24.44 0.00 44.35 1.73
3702 4123 7.759489 AGTGTTCTGAACATTGGCTTTATTA 57.241 32.000 24.44 0.00 44.35 0.98
3703 4124 6.655078 AGTGTTCTGAACATTGGCTTTATT 57.345 33.333 24.44 0.00 44.35 1.40
3704 4125 6.655078 AAGTGTTCTGAACATTGGCTTTAT 57.345 33.333 24.44 2.81 44.35 1.40
3705 4126 6.096141 TGAAAGTGTTCTGAACATTGGCTTTA 59.904 34.615 24.58 15.74 44.35 1.85
3706 4127 5.105392 TGAAAGTGTTCTGAACATTGGCTTT 60.105 36.000 24.70 24.70 44.35 3.51
3707 4128 4.402155 TGAAAGTGTTCTGAACATTGGCTT 59.598 37.500 24.44 18.93 44.35 4.35
3708 4129 3.953612 TGAAAGTGTTCTGAACATTGGCT 59.046 39.130 24.44 14.56 44.35 4.75
3709 4130 4.036734 TCTGAAAGTGTTCTGAACATTGGC 59.963 41.667 24.44 15.97 44.35 4.52
3710 4131 5.756195 TCTGAAAGTGTTCTGAACATTGG 57.244 39.130 24.44 12.32 44.35 3.16
3711 4132 7.420002 TCAATCTGAAAGTGTTCTGAACATTG 58.580 34.615 24.44 20.06 44.35 2.82
3712 4133 7.572523 TCAATCTGAAAGTGTTCTGAACATT 57.427 32.000 24.44 18.32 44.35 2.71
3713 4134 7.255381 CCTTCAATCTGAAAGTGTTCTGAACAT 60.255 37.037 24.44 10.40 42.75 2.71
3714 4135 6.038603 CCTTCAATCTGAAAGTGTTCTGAACA 59.961 38.462 18.69 18.69 42.75 3.18
3715 4136 6.433766 CCTTCAATCTGAAAGTGTTCTGAAC 58.566 40.000 13.49 13.49 42.75 3.18
3716 4137 5.009010 GCCTTCAATCTGAAAGTGTTCTGAA 59.991 40.000 0.99 0.00 42.75 3.02
3717 4138 4.516698 GCCTTCAATCTGAAAGTGTTCTGA 59.483 41.667 0.00 0.00 43.38 3.27
3718 4139 4.320788 GGCCTTCAATCTGAAAGTGTTCTG 60.321 45.833 0.00 0.00 35.73 3.02
3719 4140 3.823304 GGCCTTCAATCTGAAAGTGTTCT 59.177 43.478 0.00 0.00 35.73 3.01
3720 4141 3.823304 AGGCCTTCAATCTGAAAGTGTTC 59.177 43.478 0.00 0.00 35.73 3.18
3721 4142 3.837355 AGGCCTTCAATCTGAAAGTGTT 58.163 40.909 0.00 0.00 35.73 3.32
3722 4143 3.515602 AGGCCTTCAATCTGAAAGTGT 57.484 42.857 0.00 0.00 35.73 3.55
3735 4156 5.437060 TCATCACTGGTTTATAAGGCCTTC 58.563 41.667 24.49 6.97 0.00 3.46
3746 4167 2.925724 TCAACGGTTCATCACTGGTTT 58.074 42.857 0.00 0.00 35.83 3.27
3761 4182 4.676471 CCATTTTCCATGCGATTATCAACG 59.324 41.667 0.00 0.00 0.00 4.10
3869 4296 9.003658 GCTCATGGTTTTTGCTATGTACTATAT 57.996 33.333 0.00 0.00 0.00 0.86
3870 4297 8.210946 AGCTCATGGTTTTTGCTATGTACTATA 58.789 33.333 0.00 0.00 31.71 1.31
3872 4299 6.414732 AGCTCATGGTTTTTGCTATGTACTA 58.585 36.000 0.00 0.00 31.71 1.82
3874 4301 5.567138 AGCTCATGGTTTTTGCTATGTAC 57.433 39.130 0.00 0.00 31.71 2.90
3959 4388 5.994668 TCTATGTTTGTGCATTGTCACAGTA 59.005 36.000 11.75 4.89 46.28 2.74
4002 4431 2.570181 GCTCCATGGTGCAAGTGC 59.430 61.111 29.33 11.97 42.50 4.40
4003 4432 2.693762 CGGCTCCATGGTGCAAGTG 61.694 63.158 33.28 19.08 36.47 3.16
4004 4433 2.360350 CGGCTCCATGGTGCAAGT 60.360 61.111 33.28 0.00 36.47 3.16
4005 4434 3.818787 GCGGCTCCATGGTGCAAG 61.819 66.667 33.28 27.07 36.47 4.01
4035 4464 1.469308 GAGTACTCTCGGGATATGCCG 59.531 57.143 28.02 28.02 37.63 5.69
4153 4582 0.994995 CTGATCTCCACGAAACGCTG 59.005 55.000 0.00 0.00 0.00 5.18
4283 4712 6.209788 CCTACCTTCTCTATAACCCATCTGAC 59.790 46.154 0.00 0.00 0.00 3.51
4294 4729 5.138758 TGTTCAGCCCTACCTTCTCTATA 57.861 43.478 0.00 0.00 0.00 1.31
4295 4730 3.995636 TGTTCAGCCCTACCTTCTCTAT 58.004 45.455 0.00 0.00 0.00 1.98
4298 4733 2.567615 TCTTGTTCAGCCCTACCTTCTC 59.432 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.