Multiple sequence alignment - TraesCS1B01G024500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G024500 chr1B 100.000 3562 0 0 1 3562 11857237 11860798 0.000000e+00 6578.0
1 TraesCS1B01G024500 chr1B 86.430 619 84 0 1789 2407 360808768 360809386 0.000000e+00 678.0
2 TraesCS1B01G024500 chr1B 81.338 568 80 18 999 1544 360808078 360808641 4.220000e-119 438.0
3 TraesCS1B01G024500 chr1D 91.435 2405 121 38 646 3011 8712454 8714812 0.000000e+00 3221.0
4 TraesCS1B01G024500 chr1D 85.460 619 90 0 1789 2407 252528696 252528078 0.000000e+00 645.0
5 TraesCS1B01G024500 chr1D 85.749 407 56 1 1145 1549 252529222 252528816 2.540000e-116 429.0
6 TraesCS1B01G024500 chr1D 88.824 170 19 0 3393 3562 8715245 8715414 3.600000e-50 209.0
7 TraesCS1B01G024500 chr1A 94.668 1294 47 12 1727 3011 10067969 10069249 0.000000e+00 1988.0
8 TraesCS1B01G024500 chr1A 87.123 1126 78 33 646 1733 10066834 10067930 0.000000e+00 1214.0
9 TraesCS1B01G024500 chr1A 81.806 775 128 12 1789 2560 323643083 323642319 3.880000e-179 638.0
10 TraesCS1B01G024500 chr1A 81.217 575 81 21 999 1549 323643773 323643202 4.220000e-119 438.0
11 TraesCS1B01G024500 chr1A 90.816 196 16 2 3369 3562 10069670 10069865 9.810000e-66 261.0
12 TraesCS1B01G024500 chr1A 95.455 44 2 0 519 562 10066683 10066726 1.770000e-08 71.3
13 TraesCS1B01G024500 chr5D 86.517 623 84 0 1784 2406 210375313 210374691 0.000000e+00 686.0
14 TraesCS1B01G024500 chr5D 80.944 551 91 11 999 1544 210375928 210375387 1.180000e-114 424.0
15 TraesCS1B01G024500 chr5D 84.750 400 61 0 1145 1544 538789667 538789268 5.540000e-108 401.0
16 TraesCS1B01G024500 chr5B 86.196 623 86 0 1784 2406 223984469 223983847 0.000000e+00 675.0
17 TraesCS1B01G024500 chr5B 81.341 552 87 13 999 1544 223985083 223984542 5.460000e-118 435.0
18 TraesCS1B01G024500 chr5B 84.750 400 61 0 1145 1544 680360522 680360123 5.540000e-108 401.0
19 TraesCS1B01G024500 chr5A 85.875 623 88 0 1784 2406 272132572 272131950 0.000000e+00 664.0
20 TraesCS1B01G024500 chr5A 81.455 550 86 13 999 1544 272133183 272132646 1.520000e-118 436.0
21 TraesCS1B01G024500 chr4A 86.181 398 55 0 1146 1543 576703435 576703038 7.060000e-117 431.0
22 TraesCS1B01G024500 chr4B 85.678 398 57 0 1146 1543 39120609 39121006 1.530000e-113 420.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G024500 chr1B 11857237 11860798 3561 False 6578.000 6578 100.0000 1 3562 1 chr1B.!!$F1 3561
1 TraesCS1B01G024500 chr1B 360808078 360809386 1308 False 558.000 678 83.8840 999 2407 2 chr1B.!!$F2 1408
2 TraesCS1B01G024500 chr1D 8712454 8715414 2960 False 1715.000 3221 90.1295 646 3562 2 chr1D.!!$F1 2916
3 TraesCS1B01G024500 chr1D 252528078 252529222 1144 True 537.000 645 85.6045 1145 2407 2 chr1D.!!$R1 1262
4 TraesCS1B01G024500 chr1A 10066683 10069865 3182 False 883.575 1988 92.0155 519 3562 4 chr1A.!!$F1 3043
5 TraesCS1B01G024500 chr1A 323642319 323643773 1454 True 538.000 638 81.5115 999 2560 2 chr1A.!!$R1 1561
6 TraesCS1B01G024500 chr5D 210374691 210375928 1237 True 555.000 686 83.7305 999 2406 2 chr5D.!!$R2 1407
7 TraesCS1B01G024500 chr5B 223983847 223985083 1236 True 555.000 675 83.7685 999 2406 2 chr5B.!!$R2 1407
8 TraesCS1B01G024500 chr5A 272131950 272133183 1233 True 550.000 664 83.6650 999 2406 2 chr5A.!!$R1 1407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.040157 CATTGTGTTGTGCCTCCACG 60.040 55.000 0.00 0.00 45.04 4.94 F
361 362 0.103572 TATTACTTCTCACGGCCGGC 59.896 55.000 31.76 21.18 0.00 6.13 F
500 501 0.104882 TCCACCACCTCCCACAGTTA 60.105 55.000 0.00 0.00 0.00 2.24 F
741 784 0.475828 AGCTTAACCCTCCCTGGTGT 60.476 55.000 0.00 0.00 39.05 4.16 F
2046 2253 1.004560 TGCCAAGAACAGCTCCTCG 60.005 57.895 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1652 1.657751 GGGAAAGCACGGCCTGAATC 61.658 60.000 0.00 0.0 0.0 2.52 R
2352 2559 0.629596 ACCCTCCGATCCAGACACTA 59.370 55.000 0.00 0.0 0.0 2.74 R
2432 2639 4.377897 GTTTCGGGTCAGATGGGTTATAG 58.622 47.826 0.00 0.0 0.0 1.31 R
2513 2760 0.029567 GGCCAGACTCGTCATACTCG 59.970 60.000 0.00 0.0 0.0 4.18 R
3466 3941 0.597637 CTAGGCGGCGTCGATGAAAT 60.598 55.000 16.53 0.0 39.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 3.809423 GGAGATCCGGCGGAAAAC 58.191 61.111 34.58 24.99 34.34 2.43
67 68 1.818363 GGAGATCCGGCGGAAAACC 60.818 63.158 34.58 28.36 34.34 3.27
75 76 3.351416 GCGGAAAACCGGCGACTT 61.351 61.111 9.30 0.00 0.00 3.01
76 77 2.858158 CGGAAAACCGGCGACTTC 59.142 61.111 9.30 7.75 0.00 3.01
77 78 1.957186 CGGAAAACCGGCGACTTCA 60.957 57.895 9.30 0.00 0.00 3.02
78 79 1.572941 GGAAAACCGGCGACTTCAC 59.427 57.895 9.30 0.00 0.00 3.18
79 80 1.572941 GAAAACCGGCGACTTCACC 59.427 57.895 9.30 0.00 0.00 4.02
87 88 2.430921 CGACTTCACCGCGCTCTT 60.431 61.111 5.56 0.00 0.00 2.85
88 89 2.720758 CGACTTCACCGCGCTCTTG 61.721 63.158 5.56 0.00 0.00 3.02
89 90 1.664965 GACTTCACCGCGCTCTTGT 60.665 57.895 5.56 0.00 0.00 3.16
90 91 1.891060 GACTTCACCGCGCTCTTGTG 61.891 60.000 5.56 2.84 0.00 3.33
91 92 2.664851 TTCACCGCGCTCTTGTGG 60.665 61.111 5.56 0.00 45.20 4.17
99 100 3.056328 GCTCTTGTGGCCCGGTTC 61.056 66.667 0.00 0.00 0.00 3.62
100 101 2.750350 CTCTTGTGGCCCGGTTCT 59.250 61.111 0.00 0.00 0.00 3.01
101 102 1.073199 CTCTTGTGGCCCGGTTCTT 59.927 57.895 0.00 0.00 0.00 2.52
102 103 1.228124 TCTTGTGGCCCGGTTCTTG 60.228 57.895 0.00 0.00 0.00 3.02
103 104 1.528309 CTTGTGGCCCGGTTCTTGT 60.528 57.895 0.00 0.00 0.00 3.16
104 105 1.515521 CTTGTGGCCCGGTTCTTGTC 61.516 60.000 0.00 0.00 0.00 3.18
105 106 1.990160 TTGTGGCCCGGTTCTTGTCT 61.990 55.000 0.00 0.00 0.00 3.41
106 107 1.228154 GTGGCCCGGTTCTTGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
107 108 1.072505 TGGCCCGGTTCTTGTCTTC 59.927 57.895 0.00 0.00 0.00 2.87
108 109 1.674651 GGCCCGGTTCTTGTCTTCC 60.675 63.158 0.00 0.00 0.00 3.46
109 110 1.375326 GCCCGGTTCTTGTCTTCCT 59.625 57.895 0.00 0.00 0.00 3.36
110 111 0.955919 GCCCGGTTCTTGTCTTCCTG 60.956 60.000 0.00 0.00 0.00 3.86
111 112 0.955919 CCCGGTTCTTGTCTTCCTGC 60.956 60.000 0.00 0.00 0.00 4.85
112 113 1.291877 CCGGTTCTTGTCTTCCTGCG 61.292 60.000 0.00 0.00 0.00 5.18
113 114 0.600255 CGGTTCTTGTCTTCCTGCGT 60.600 55.000 0.00 0.00 0.00 5.24
114 115 1.149148 GGTTCTTGTCTTCCTGCGTC 58.851 55.000 0.00 0.00 0.00 5.19
115 116 0.784778 GTTCTTGTCTTCCTGCGTCG 59.215 55.000 0.00 0.00 0.00 5.12
116 117 0.671796 TTCTTGTCTTCCTGCGTCGA 59.328 50.000 0.00 0.00 0.00 4.20
117 118 0.888619 TCTTGTCTTCCTGCGTCGAT 59.111 50.000 0.00 0.00 0.00 3.59
118 119 0.994995 CTTGTCTTCCTGCGTCGATG 59.005 55.000 0.00 0.00 0.00 3.84
119 120 1.014044 TTGTCTTCCTGCGTCGATGC 61.014 55.000 22.77 22.77 0.00 3.91
120 121 1.153745 GTCTTCCTGCGTCGATGCT 60.154 57.895 28.53 0.00 35.36 3.79
121 122 1.139734 TCTTCCTGCGTCGATGCTC 59.860 57.895 28.53 3.22 35.36 4.26
122 123 1.153765 CTTCCTGCGTCGATGCTCA 60.154 57.895 28.53 10.19 35.36 4.26
123 124 0.529337 CTTCCTGCGTCGATGCTCAT 60.529 55.000 28.53 0.00 35.36 2.90
124 125 0.807275 TTCCTGCGTCGATGCTCATG 60.807 55.000 28.53 15.89 35.36 3.07
125 126 2.624811 CTGCGTCGATGCTCATGC 59.375 61.111 28.53 3.93 40.20 4.06
126 127 1.881709 CTGCGTCGATGCTCATGCT 60.882 57.895 28.53 0.00 40.48 3.79
127 128 1.819226 CTGCGTCGATGCTCATGCTC 61.819 60.000 28.53 0.00 40.48 4.26
128 129 1.591059 GCGTCGATGCTCATGCTCT 60.591 57.895 22.31 0.00 40.48 4.09
129 130 1.819226 GCGTCGATGCTCATGCTCTG 61.819 60.000 22.31 0.00 40.48 3.35
130 131 1.213733 CGTCGATGCTCATGCTCTGG 61.214 60.000 0.00 0.00 40.48 3.86
131 132 0.179089 GTCGATGCTCATGCTCTGGT 60.179 55.000 0.00 0.00 40.48 4.00
132 133 0.103755 TCGATGCTCATGCTCTGGTC 59.896 55.000 0.00 0.00 40.48 4.02
133 134 0.879400 CGATGCTCATGCTCTGGTCC 60.879 60.000 0.00 0.00 40.48 4.46
134 135 0.879400 GATGCTCATGCTCTGGTCCG 60.879 60.000 0.00 0.00 40.48 4.79
135 136 2.894387 GCTCATGCTCTGGTCCGC 60.894 66.667 0.00 0.00 36.03 5.54
136 137 2.202987 CTCATGCTCTGGTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
137 138 4.147449 TCATGCTCTGGTCCGCCG 62.147 66.667 0.00 0.00 37.67 6.46
168 169 4.112341 GCTGGCTGCCGCTTCTTG 62.112 66.667 22.23 6.02 36.09 3.02
169 170 3.437795 CTGGCTGCCGCTTCTTGG 61.438 66.667 14.98 0.00 36.09 3.61
178 179 4.112341 GCTTCTTGGCTGCCGCTG 62.112 66.667 14.98 6.62 36.09 5.18
179 180 4.112341 CTTCTTGGCTGCCGCTGC 62.112 66.667 14.98 13.48 36.09 5.25
216 217 4.157120 GCCACACCCCGCGTAGAT 62.157 66.667 4.92 0.00 0.00 1.98
217 218 2.106332 CCACACCCCGCGTAGATC 59.894 66.667 4.92 0.00 0.00 2.75
218 219 2.106332 CACACCCCGCGTAGATCC 59.894 66.667 4.92 0.00 0.00 3.36
219 220 3.524606 ACACCCCGCGTAGATCCG 61.525 66.667 4.92 0.00 0.00 4.18
228 229 4.944372 GTAGATCCGCGGCGGGTG 62.944 72.222 37.83 15.90 42.08 4.61
240 241 4.393155 CGGGTGTGCTGGCTGCTA 62.393 66.667 17.45 4.01 43.37 3.49
241 242 2.747855 GGGTGTGCTGGCTGCTAC 60.748 66.667 17.45 14.92 43.37 3.58
242 243 2.032528 GGTGTGCTGGCTGCTACA 59.967 61.111 17.45 15.56 43.37 2.74
243 244 2.037136 GGTGTGCTGGCTGCTACAG 61.037 63.158 17.45 0.11 43.37 2.74
244 245 1.302033 GTGTGCTGGCTGCTACAGT 60.302 57.895 17.45 0.00 43.37 3.55
245 246 1.301953 TGTGCTGGCTGCTACAGTG 60.302 57.895 17.45 0.00 43.37 3.66
246 247 2.359107 TGCTGGCTGCTACAGTGC 60.359 61.111 17.45 0.00 43.37 4.40
247 248 2.046507 GCTGGCTGCTACAGTGCT 60.047 61.111 9.31 0.00 38.22 4.40
248 249 2.105466 GCTGGCTGCTACAGTGCTC 61.105 63.158 9.31 0.00 38.22 4.26
249 250 1.808799 CTGGCTGCTACAGTGCTCG 60.809 63.158 0.00 0.00 33.43 5.03
250 251 2.510238 GGCTGCTACAGTGCTCGG 60.510 66.667 0.00 0.00 33.43 4.63
251 252 3.191539 GCTGCTACAGTGCTCGGC 61.192 66.667 0.00 0.00 33.43 5.54
252 253 2.882777 CTGCTACAGTGCTCGGCG 60.883 66.667 0.00 0.00 0.00 6.46
253 254 3.342370 CTGCTACAGTGCTCGGCGA 62.342 63.158 10.14 10.14 0.00 5.54
254 255 2.881352 GCTACAGTGCTCGGCGAC 60.881 66.667 4.99 3.81 0.00 5.19
255 256 2.202623 CTACAGTGCTCGGCGACC 60.203 66.667 4.99 0.00 0.00 4.79
272 273 4.503314 CGCTCCCGGTTCCCGTAC 62.503 72.222 0.00 0.00 46.80 3.67
273 274 4.503314 GCTCCCGGTTCCCGTACG 62.503 72.222 8.69 8.69 46.80 3.67
274 275 4.503314 CTCCCGGTTCCCGTACGC 62.503 72.222 10.49 0.00 46.80 4.42
309 310 4.431131 CCCTGTTCGCCTGCCCAT 62.431 66.667 0.00 0.00 0.00 4.00
310 311 2.361610 CCTGTTCGCCTGCCCATT 60.362 61.111 0.00 0.00 0.00 3.16
311 312 2.703798 CCTGTTCGCCTGCCCATTG 61.704 63.158 0.00 0.00 0.00 2.82
312 313 1.973281 CTGTTCGCCTGCCCATTGT 60.973 57.895 0.00 0.00 0.00 2.71
313 314 2.203972 CTGTTCGCCTGCCCATTGTG 62.204 60.000 0.00 0.00 0.00 3.33
314 315 2.115052 TTCGCCTGCCCATTGTGT 59.885 55.556 0.00 0.00 0.00 3.72
315 316 1.530419 TTCGCCTGCCCATTGTGTT 60.530 52.632 0.00 0.00 0.00 3.32
316 317 1.804396 TTCGCCTGCCCATTGTGTTG 61.804 55.000 0.00 0.00 0.00 3.33
317 318 2.563798 CGCCTGCCCATTGTGTTGT 61.564 57.895 0.00 0.00 0.00 3.32
318 319 1.005867 GCCTGCCCATTGTGTTGTG 60.006 57.895 0.00 0.00 0.00 3.33
319 320 1.005867 CCTGCCCATTGTGTTGTGC 60.006 57.895 0.00 0.00 0.00 4.57
320 321 1.005867 CTGCCCATTGTGTTGTGCC 60.006 57.895 0.00 0.00 0.00 5.01
321 322 1.457267 TGCCCATTGTGTTGTGCCT 60.457 52.632 0.00 0.00 0.00 4.75
322 323 1.290009 GCCCATTGTGTTGTGCCTC 59.710 57.895 0.00 0.00 0.00 4.70
323 324 1.966762 CCCATTGTGTTGTGCCTCC 59.033 57.895 0.00 0.00 0.00 4.30
324 325 0.827089 CCCATTGTGTTGTGCCTCCA 60.827 55.000 0.00 0.00 0.00 3.86
325 326 0.314935 CCATTGTGTTGTGCCTCCAC 59.685 55.000 0.00 0.00 42.40 4.02
326 327 0.040157 CATTGTGTTGTGCCTCCACG 60.040 55.000 0.00 0.00 45.04 4.94
327 328 1.795170 ATTGTGTTGTGCCTCCACGC 61.795 55.000 0.00 0.00 45.04 5.34
328 329 2.591715 GTGTTGTGCCTCCACGCT 60.592 61.111 0.00 0.00 45.04 5.07
329 330 2.591429 TGTTGTGCCTCCACGCTG 60.591 61.111 0.00 0.00 45.04 5.18
330 331 4.030452 GTTGTGCCTCCACGCTGC 62.030 66.667 0.00 0.00 45.04 5.25
331 332 4.254709 TTGTGCCTCCACGCTGCT 62.255 61.111 0.00 0.00 45.04 4.24
332 333 3.772853 TTGTGCCTCCACGCTGCTT 62.773 57.895 0.00 0.00 45.04 3.91
333 334 3.426568 GTGCCTCCACGCTGCTTC 61.427 66.667 0.00 0.00 31.34 3.86
334 335 4.704833 TGCCTCCACGCTGCTTCC 62.705 66.667 0.00 0.00 0.00 3.46
335 336 4.400961 GCCTCCACGCTGCTTCCT 62.401 66.667 0.00 0.00 0.00 3.36
336 337 2.435586 CCTCCACGCTGCTTCCTG 60.436 66.667 0.00 0.00 0.00 3.86
337 338 3.123620 CTCCACGCTGCTTCCTGC 61.124 66.667 0.00 0.00 43.25 4.85
338 339 4.704833 TCCACGCTGCTTCCTGCC 62.705 66.667 0.00 0.00 42.00 4.85
341 342 4.626081 ACGCTGCTTCCTGCCGTT 62.626 61.111 0.00 0.00 42.00 4.44
342 343 3.357079 CGCTGCTTCCTGCCGTTT 61.357 61.111 0.00 0.00 42.00 3.60
343 344 2.032634 CGCTGCTTCCTGCCGTTTA 61.033 57.895 0.00 0.00 42.00 2.01
344 345 1.369091 CGCTGCTTCCTGCCGTTTAT 61.369 55.000 0.00 0.00 42.00 1.40
345 346 0.811281 GCTGCTTCCTGCCGTTTATT 59.189 50.000 0.00 0.00 42.00 1.40
346 347 2.014128 GCTGCTTCCTGCCGTTTATTA 58.986 47.619 0.00 0.00 42.00 0.98
347 348 2.223272 GCTGCTTCCTGCCGTTTATTAC 60.223 50.000 0.00 0.00 42.00 1.89
348 349 3.270877 CTGCTTCCTGCCGTTTATTACT 58.729 45.455 0.00 0.00 42.00 2.24
349 350 3.681593 TGCTTCCTGCCGTTTATTACTT 58.318 40.909 0.00 0.00 42.00 2.24
350 351 3.687698 TGCTTCCTGCCGTTTATTACTTC 59.312 43.478 0.00 0.00 42.00 3.01
351 352 3.939592 GCTTCCTGCCGTTTATTACTTCT 59.060 43.478 0.00 0.00 35.15 2.85
352 353 4.034163 GCTTCCTGCCGTTTATTACTTCTC 59.966 45.833 0.00 0.00 35.15 2.87
353 354 4.811969 TCCTGCCGTTTATTACTTCTCA 57.188 40.909 0.00 0.00 0.00 3.27
354 355 4.501071 TCCTGCCGTTTATTACTTCTCAC 58.499 43.478 0.00 0.00 0.00 3.51
355 356 3.306166 CCTGCCGTTTATTACTTCTCACG 59.694 47.826 0.00 0.00 0.00 4.35
357 358 3.920112 CCGTTTATTACTTCTCACGGC 57.080 47.619 0.00 0.00 40.63 5.68
358 359 2.606272 CCGTTTATTACTTCTCACGGCC 59.394 50.000 0.00 0.00 40.63 6.13
359 360 2.280708 CGTTTATTACTTCTCACGGCCG 59.719 50.000 26.86 26.86 0.00 6.13
360 361 2.589798 TTATTACTTCTCACGGCCGG 57.410 50.000 31.76 18.67 0.00 6.13
361 362 0.103572 TATTACTTCTCACGGCCGGC 59.896 55.000 31.76 21.18 0.00 6.13
362 363 1.614241 ATTACTTCTCACGGCCGGCT 61.614 55.000 31.76 6.18 0.00 5.52
363 364 1.823169 TTACTTCTCACGGCCGGCTT 61.823 55.000 31.76 11.31 0.00 4.35
364 365 2.501223 TACTTCTCACGGCCGGCTTG 62.501 60.000 31.76 23.10 0.00 4.01
365 366 4.697756 TTCTCACGGCCGGCTTGG 62.698 66.667 31.76 18.26 42.50 3.61
376 377 4.035102 GGCTTGGCTTCCTCCGGT 62.035 66.667 0.00 0.00 0.00 5.28
377 378 2.034221 GCTTGGCTTCCTCCGGTT 59.966 61.111 0.00 0.00 0.00 4.44
378 379 2.041115 GCTTGGCTTCCTCCGGTTC 61.041 63.158 0.00 0.00 0.00 3.62
379 380 1.377333 CTTGGCTTCCTCCGGTTCC 60.377 63.158 0.00 0.00 0.00 3.62
380 381 2.821679 CTTGGCTTCCTCCGGTTCCC 62.822 65.000 0.00 0.00 0.00 3.97
391 392 4.796495 GGTTCCCGGCCGCTGATT 62.796 66.667 22.85 0.00 0.00 2.57
392 393 3.508840 GTTCCCGGCCGCTGATTG 61.509 66.667 22.85 4.41 0.00 2.67
398 399 3.567797 GGCCGCTGATTGCTCGTC 61.568 66.667 0.00 0.00 40.11 4.20
399 400 3.918220 GCCGCTGATTGCTCGTCG 61.918 66.667 0.00 0.00 40.11 5.12
400 401 3.257561 CCGCTGATTGCTCGTCGG 61.258 66.667 0.00 0.00 40.11 4.79
401 402 2.507102 CGCTGATTGCTCGTCGGT 60.507 61.111 0.00 0.00 40.11 4.69
402 403 2.508891 CGCTGATTGCTCGTCGGTC 61.509 63.158 0.00 0.00 40.11 4.79
403 404 2.508891 GCTGATTGCTCGTCGGTCG 61.509 63.158 0.00 0.00 38.95 4.79
404 405 1.874019 CTGATTGCTCGTCGGTCGG 60.874 63.158 0.00 0.00 40.32 4.79
405 406 2.582498 GATTGCTCGTCGGTCGGG 60.582 66.667 0.00 0.00 43.80 5.14
423 424 2.360350 CACCACCAGCGCCTGATT 60.360 61.111 2.29 0.00 32.44 2.57
424 425 1.973281 CACCACCAGCGCCTGATTT 60.973 57.895 2.29 0.00 32.44 2.17
425 426 1.973281 ACCACCAGCGCCTGATTTG 60.973 57.895 2.29 0.00 32.44 2.32
426 427 2.703798 CCACCAGCGCCTGATTTGG 61.704 63.158 2.29 6.68 32.44 3.28
427 428 2.361610 ACCAGCGCCTGATTTGGG 60.362 61.111 14.74 2.41 34.99 4.12
428 429 2.361610 CCAGCGCCTGATTTGGGT 60.362 61.111 2.29 0.00 32.44 4.51
429 430 1.077787 CCAGCGCCTGATTTGGGTA 60.078 57.895 2.29 0.00 32.44 3.69
430 431 1.376609 CCAGCGCCTGATTTGGGTAC 61.377 60.000 2.29 0.00 32.44 3.34
431 432 0.392998 CAGCGCCTGATTTGGGTACT 60.393 55.000 2.29 0.00 32.44 2.73
432 433 0.328258 AGCGCCTGATTTGGGTACTT 59.672 50.000 2.29 0.00 0.00 2.24
433 434 0.733150 GCGCCTGATTTGGGTACTTC 59.267 55.000 0.00 0.00 0.00 3.01
434 435 1.379527 CGCCTGATTTGGGTACTTCC 58.620 55.000 0.00 0.00 0.00 3.46
447 448 4.608948 GGTACTTCCCAGGTCTATGATG 57.391 50.000 0.00 0.00 0.00 3.07
448 449 3.967987 GGTACTTCCCAGGTCTATGATGT 59.032 47.826 0.00 0.00 0.00 3.06
449 450 4.039366 GGTACTTCCCAGGTCTATGATGTC 59.961 50.000 0.00 0.00 0.00 3.06
450 451 2.695666 ACTTCCCAGGTCTATGATGTCG 59.304 50.000 0.00 0.00 0.00 4.35
451 452 2.454336 TCCCAGGTCTATGATGTCGT 57.546 50.000 0.00 0.00 0.00 4.34
452 453 2.747177 TCCCAGGTCTATGATGTCGTT 58.253 47.619 0.00 0.00 0.00 3.85
453 454 3.104512 TCCCAGGTCTATGATGTCGTTT 58.895 45.455 0.00 0.00 0.00 3.60
454 455 3.517901 TCCCAGGTCTATGATGTCGTTTT 59.482 43.478 0.00 0.00 0.00 2.43
455 456 3.623060 CCCAGGTCTATGATGTCGTTTTG 59.377 47.826 0.00 0.00 0.00 2.44
456 457 4.503910 CCAGGTCTATGATGTCGTTTTGA 58.496 43.478 0.00 0.00 0.00 2.69
457 458 5.118990 CCAGGTCTATGATGTCGTTTTGAT 58.881 41.667 0.00 0.00 0.00 2.57
458 459 5.007039 CCAGGTCTATGATGTCGTTTTGATG 59.993 44.000 0.00 0.00 0.00 3.07
459 460 5.007039 CAGGTCTATGATGTCGTTTTGATGG 59.993 44.000 0.00 0.00 0.00 3.51
460 461 4.876107 GGTCTATGATGTCGTTTTGATGGT 59.124 41.667 0.00 0.00 0.00 3.55
461 462 5.006746 GGTCTATGATGTCGTTTTGATGGTC 59.993 44.000 0.00 0.00 0.00 4.02
462 463 5.812642 GTCTATGATGTCGTTTTGATGGTCT 59.187 40.000 0.00 0.00 0.00 3.85
463 464 4.952262 ATGATGTCGTTTTGATGGTCTG 57.048 40.909 0.00 0.00 0.00 3.51
464 465 2.483877 TGATGTCGTTTTGATGGTCTGC 59.516 45.455 0.00 0.00 0.00 4.26
465 466 1.960417 TGTCGTTTTGATGGTCTGCA 58.040 45.000 0.00 0.00 0.00 4.41
466 467 2.503331 TGTCGTTTTGATGGTCTGCAT 58.497 42.857 0.00 0.00 0.00 3.96
467 468 2.226200 TGTCGTTTTGATGGTCTGCATG 59.774 45.455 0.00 0.00 0.00 4.06
468 469 2.226437 GTCGTTTTGATGGTCTGCATGT 59.774 45.455 0.00 0.00 0.00 3.21
469 470 3.435327 GTCGTTTTGATGGTCTGCATGTA 59.565 43.478 0.00 0.00 0.00 2.29
470 471 4.094887 GTCGTTTTGATGGTCTGCATGTAT 59.905 41.667 0.00 0.00 0.00 2.29
471 472 4.332543 TCGTTTTGATGGTCTGCATGTATC 59.667 41.667 0.00 0.00 0.00 2.24
472 473 4.333649 CGTTTTGATGGTCTGCATGTATCT 59.666 41.667 0.00 0.00 0.00 1.98
473 474 5.575957 GTTTTGATGGTCTGCATGTATCTG 58.424 41.667 0.00 0.00 0.00 2.90
474 475 4.758773 TTGATGGTCTGCATGTATCTGA 57.241 40.909 0.00 0.00 0.00 3.27
475 476 4.332428 TGATGGTCTGCATGTATCTGAG 57.668 45.455 0.00 0.00 0.00 3.35
476 477 3.070590 TGATGGTCTGCATGTATCTGAGG 59.929 47.826 0.00 0.00 0.00 3.86
477 478 1.764723 TGGTCTGCATGTATCTGAGGG 59.235 52.381 0.00 0.00 0.00 4.30
478 479 1.765314 GGTCTGCATGTATCTGAGGGT 59.235 52.381 0.00 0.00 0.00 4.34
479 480 2.171448 GGTCTGCATGTATCTGAGGGTT 59.829 50.000 0.00 0.00 0.00 4.11
480 481 3.388024 GGTCTGCATGTATCTGAGGGTTA 59.612 47.826 0.00 0.00 0.00 2.85
481 482 4.040952 GGTCTGCATGTATCTGAGGGTTAT 59.959 45.833 0.00 0.00 0.00 1.89
482 483 5.233988 GTCTGCATGTATCTGAGGGTTATC 58.766 45.833 0.00 0.00 0.00 1.75
483 484 4.284490 TCTGCATGTATCTGAGGGTTATCC 59.716 45.833 0.00 0.00 0.00 2.59
484 485 3.973305 TGCATGTATCTGAGGGTTATCCA 59.027 43.478 0.00 0.00 38.24 3.41
485 486 4.202357 TGCATGTATCTGAGGGTTATCCAC 60.202 45.833 0.00 0.00 38.24 4.02
486 487 4.804261 GCATGTATCTGAGGGTTATCCACC 60.804 50.000 0.00 0.00 46.46 4.61
494 495 2.704719 GGTTATCCACCACCTCCCA 58.295 57.895 0.00 0.00 46.42 4.37
495 496 0.255033 GGTTATCCACCACCTCCCAC 59.745 60.000 0.00 0.00 46.42 4.61
496 497 0.988832 GTTATCCACCACCTCCCACA 59.011 55.000 0.00 0.00 0.00 4.17
497 498 1.065418 GTTATCCACCACCTCCCACAG 60.065 57.143 0.00 0.00 0.00 3.66
498 499 0.118346 TATCCACCACCTCCCACAGT 59.882 55.000 0.00 0.00 0.00 3.55
499 500 0.772124 ATCCACCACCTCCCACAGTT 60.772 55.000 0.00 0.00 0.00 3.16
500 501 0.104882 TCCACCACCTCCCACAGTTA 60.105 55.000 0.00 0.00 0.00 2.24
501 502 0.991920 CCACCACCTCCCACAGTTAT 59.008 55.000 0.00 0.00 0.00 1.89
502 503 1.354368 CCACCACCTCCCACAGTTATT 59.646 52.381 0.00 0.00 0.00 1.40
503 504 2.225017 CCACCACCTCCCACAGTTATTT 60.225 50.000 0.00 0.00 0.00 1.40
504 505 3.081804 CACCACCTCCCACAGTTATTTC 58.918 50.000 0.00 0.00 0.00 2.17
505 506 2.986728 ACCACCTCCCACAGTTATTTCT 59.013 45.455 0.00 0.00 0.00 2.52
506 507 3.397955 ACCACCTCCCACAGTTATTTCTT 59.602 43.478 0.00 0.00 0.00 2.52
507 508 3.758554 CCACCTCCCACAGTTATTTCTTG 59.241 47.826 0.00 0.00 0.00 3.02
508 509 4.398319 CACCTCCCACAGTTATTTCTTGT 58.602 43.478 0.00 0.00 0.00 3.16
509 510 4.455877 CACCTCCCACAGTTATTTCTTGTC 59.544 45.833 0.00 0.00 0.00 3.18
510 511 3.684788 CCTCCCACAGTTATTTCTTGTCG 59.315 47.826 0.00 0.00 0.00 4.35
511 512 3.670625 TCCCACAGTTATTTCTTGTCGG 58.329 45.455 0.00 0.00 0.00 4.79
512 513 3.325425 TCCCACAGTTATTTCTTGTCGGA 59.675 43.478 0.00 0.00 0.00 4.55
513 514 4.019681 TCCCACAGTTATTTCTTGTCGGAT 60.020 41.667 0.00 0.00 0.00 4.18
514 515 4.332819 CCCACAGTTATTTCTTGTCGGATC 59.667 45.833 0.00 0.00 0.00 3.36
515 516 4.332819 CCACAGTTATTTCTTGTCGGATCC 59.667 45.833 0.00 0.00 0.00 3.36
516 517 4.332819 CACAGTTATTTCTTGTCGGATCCC 59.667 45.833 6.06 0.00 0.00 3.85
553 554 1.457346 AGTGCAGCCAAAGTATGCTC 58.543 50.000 0.00 0.00 40.62 4.26
555 556 1.815003 GTGCAGCCAAAGTATGCTCTT 59.185 47.619 0.00 0.00 40.62 2.85
559 560 3.691609 GCAGCCAAAGTATGCTCTTAAGT 59.308 43.478 1.63 0.00 35.12 2.24
560 561 4.876107 GCAGCCAAAGTATGCTCTTAAGTA 59.124 41.667 1.63 0.00 35.12 2.24
561 562 5.529060 GCAGCCAAAGTATGCTCTTAAGTAT 59.471 40.000 1.63 0.00 35.12 2.12
562 563 6.706270 GCAGCCAAAGTATGCTCTTAAGTATA 59.294 38.462 1.63 0.00 35.12 1.47
563 564 7.307455 GCAGCCAAAGTATGCTCTTAAGTATAC 60.307 40.741 1.63 9.90 45.98 1.47
564 565 7.171678 CAGCCAAAGTATGCTCTTAAGTATACC 59.828 40.741 16.39 7.41 46.48 2.73
587 588 8.575649 ACCTATTTTCCATTCAAATTCGTAGT 57.424 30.769 0.00 0.00 0.00 2.73
588 589 9.020731 ACCTATTTTCCATTCAAATTCGTAGTT 57.979 29.630 0.00 0.00 0.00 2.24
589 590 9.289303 CCTATTTTCCATTCAAATTCGTAGTTG 57.711 33.333 0.00 0.00 0.00 3.16
590 591 9.840427 CTATTTTCCATTCAAATTCGTAGTTGT 57.160 29.630 2.22 0.00 31.55 3.32
591 592 8.742554 ATTTTCCATTCAAATTCGTAGTTGTC 57.257 30.769 2.22 0.00 31.55 3.18
592 593 5.873179 TCCATTCAAATTCGTAGTTGTCC 57.127 39.130 2.22 0.00 31.55 4.02
593 594 5.556915 TCCATTCAAATTCGTAGTTGTCCT 58.443 37.500 2.22 0.00 31.55 3.85
594 595 6.001460 TCCATTCAAATTCGTAGTTGTCCTT 58.999 36.000 2.22 0.00 31.55 3.36
600 601 5.924475 AATTCGTAGTTGTCCTTGTCAAG 57.076 39.130 5.53 5.53 0.00 3.02
601 602 2.750948 TCGTAGTTGTCCTTGTCAAGC 58.249 47.619 7.09 0.00 0.00 4.01
608 609 0.957888 GTCCTTGTCAAGCTGGCCTC 60.958 60.000 3.32 0.00 0.00 4.70
610 611 0.959372 CCTTGTCAAGCTGGCCTCAG 60.959 60.000 3.32 0.00 43.64 3.35
619 620 1.451567 CTGGCCTCAGCTGATGTGG 60.452 63.158 18.63 16.32 44.06 4.17
625 626 0.803117 CTCAGCTGATGTGGTGCTTG 59.197 55.000 18.63 0.00 34.51 4.01
627 628 1.074423 AGCTGATGTGGTGCTTGCT 59.926 52.632 0.00 0.00 32.61 3.91
629 630 1.239296 GCTGATGTGGTGCTTGCTCA 61.239 55.000 0.00 0.00 0.00 4.26
630 631 0.520404 CTGATGTGGTGCTTGCTCAC 59.480 55.000 10.75 10.75 36.28 3.51
631 632 1.229975 TGATGTGGTGCTTGCTCACG 61.230 55.000 12.09 0.00 37.83 4.35
632 633 2.518836 GATGTGGTGCTTGCTCACGC 62.519 60.000 12.09 0.00 37.83 5.34
633 634 4.030452 GTGGTGCTTGCTCACGCC 62.030 66.667 0.00 0.00 37.83 5.68
634 635 4.560743 TGGTGCTTGCTCACGCCA 62.561 61.111 2.21 2.21 43.96 5.69
635 636 3.058160 GGTGCTTGCTCACGCCAT 61.058 61.111 0.00 0.00 37.83 4.40
636 637 2.177531 GTGCTTGCTCACGCCATG 59.822 61.111 0.00 0.00 34.43 3.66
637 638 3.057548 TGCTTGCTCACGCCATGG 61.058 61.111 7.63 7.63 34.43 3.66
638 639 4.487412 GCTTGCTCACGCCATGGC 62.487 66.667 27.67 27.67 34.43 4.40
690 733 7.603404 CACCAACCATCACATGTTTATTGATTT 59.397 33.333 0.00 0.00 0.00 2.17
691 734 7.603404 ACCAACCATCACATGTTTATTGATTTG 59.397 33.333 0.00 0.00 0.00 2.32
714 757 9.494271 TTTGTTGTTATAAAAATATTGCCTGCA 57.506 25.926 0.00 0.00 0.00 4.41
741 784 0.475828 AGCTTAACCCTCCCTGGTGT 60.476 55.000 0.00 0.00 39.05 4.16
743 786 1.631898 GCTTAACCCTCCCTGGTGTTA 59.368 52.381 0.00 0.00 39.05 2.41
744 787 2.241430 GCTTAACCCTCCCTGGTGTTAT 59.759 50.000 0.00 0.00 39.05 1.89
812 857 6.295067 GCCCTTGTTTATTTAACATCCAGTGT 60.295 38.462 0.00 0.00 45.72 3.55
823 868 1.788308 CATCCAGTGTTTTGCTTTGCG 59.212 47.619 0.00 0.00 0.00 4.85
867 912 2.348591 CCGTCTTTCTTTCGCAACACTC 60.349 50.000 0.00 0.00 0.00 3.51
876 921 2.870372 GCAACACTCGGCACATCC 59.130 61.111 0.00 0.00 0.00 3.51
906 952 6.274579 TGTTCCGTGAAAAATAAAAGTTCCC 58.725 36.000 0.00 0.00 0.00 3.97
929 975 2.620115 ACAAGCCATGTGTTTCTCTGTG 59.380 45.455 0.00 0.00 41.93 3.66
942 988 3.746045 TCTCTGTGTTAGGGTGACAAC 57.254 47.619 0.00 0.00 0.00 3.32
1065 1111 1.271597 ACTGGAATGGTCAAGGTCAGC 60.272 52.381 0.00 0.00 0.00 4.26
1087 1242 4.825634 GCAACTTTCCCCTAAACTGTTACT 59.174 41.667 0.00 0.00 0.00 2.24
1088 1243 5.301045 GCAACTTTCCCCTAAACTGTTACTT 59.699 40.000 0.00 0.00 0.00 2.24
1113 1268 3.553511 GTCATCTCCTGCATCTGTTAACG 59.446 47.826 0.26 0.00 0.00 3.18
1118 1273 1.532505 CCTGCATCTGTTAACGCATGC 60.533 52.381 24.61 24.61 41.75 4.06
1119 1274 3.994729 GCATCTGTTAACGCATGCA 57.005 47.368 25.66 0.00 41.16 3.96
1124 1279 4.259530 GCATCTGTTAACGCATGCAATTTC 60.260 41.667 25.66 5.41 41.16 2.17
1197 1352 3.206964 GGCTGTTTTCCCTAGCATAGTC 58.793 50.000 0.00 0.00 36.82 2.59
1464 1619 6.825610 AGAGAAGATGACCCAGATTATGTTC 58.174 40.000 0.00 0.00 0.00 3.18
1497 1652 3.254654 CCTGCCATGTACGTCGCG 61.255 66.667 0.00 0.00 0.00 5.87
1546 1701 2.092968 AGTGGTCGTACTACCGGTATGA 60.093 50.000 16.25 3.94 42.91 2.15
1550 1705 3.378427 GGTCGTACTACCGGTATGAACTT 59.622 47.826 16.25 0.00 45.69 2.66
1551 1706 4.496507 GGTCGTACTACCGGTATGAACTTC 60.497 50.000 16.25 8.71 45.69 3.01
1574 1733 4.380867 CCCACATTTTAGTTCAGTGATGCC 60.381 45.833 0.00 0.00 32.14 4.40
1579 1738 3.423539 TTAGTTCAGTGATGCCTTGCT 57.576 42.857 0.00 0.00 0.00 3.91
1589 1748 5.355071 CAGTGATGCCTTGCTCAGTAATTTA 59.645 40.000 0.00 0.00 0.00 1.40
1594 1753 4.700213 TGCCTTGCTCAGTAATTTACCTTC 59.300 41.667 2.92 0.00 0.00 3.46
1606 1765 9.778993 CAGTAATTTACCTTCATGATTCTGTTG 57.221 33.333 0.00 0.00 0.00 3.33
1673 1832 7.506599 ACCATCAATTGTTCAGCCATGATTATA 59.493 33.333 5.13 0.00 34.73 0.98
1675 1834 8.573885 CATCAATTGTTCAGCCATGATTATACT 58.426 33.333 5.13 0.00 34.73 2.12
1676 1835 8.523915 TCAATTGTTCAGCCATGATTATACTT 57.476 30.769 5.13 0.00 34.73 2.24
1677 1836 9.625747 TCAATTGTTCAGCCATGATTATACTTA 57.374 29.630 5.13 0.00 34.73 2.24
1995 2202 2.080286 TCAAGGAGAAGCTTGCGTAC 57.920 50.000 2.10 0.00 0.00 3.67
1998 2205 1.171308 AGGAGAAGCTTGCGTACGTA 58.829 50.000 17.90 10.06 0.00 3.57
2046 2253 1.004560 TGCCAAGAACAGCTCCTCG 60.005 57.895 0.00 0.00 0.00 4.63
2352 2559 2.393646 GCTCCACCTGAGAGGAAGTAT 58.606 52.381 0.00 0.00 44.42 2.12
2432 2639 2.567615 TCTTGTTCAGCCCTACCTTCTC 59.432 50.000 0.00 0.00 0.00 2.87
2577 2824 0.994995 CTGATCTCCACGAAACGCTG 59.005 55.000 0.00 0.00 0.00 5.18
2658 2906 5.226396 TGCGTATTTGCAAGCTATGTTTTT 58.774 33.333 9.48 0.00 43.02 1.94
2695 2943 1.469308 GAGTACTCTCGGGATATGCCG 59.531 57.143 28.02 28.02 37.63 5.69
2771 3019 5.994668 TCTATGTTTGTGCATTGTCACAGTA 59.005 36.000 11.75 4.89 46.28 2.74
2856 3104 5.567138 AGCTCATGGTTTTTGCTATGTAC 57.433 39.130 0.00 0.00 31.71 2.90
2858 3106 6.414732 AGCTCATGGTTTTTGCTATGTACTA 58.585 36.000 0.00 0.00 31.71 1.82
2860 3108 8.210946 AGCTCATGGTTTTTGCTATGTACTATA 58.789 33.333 0.00 0.00 31.71 1.31
2969 3225 4.676471 CCATTTTCCATGCGATTATCAACG 59.324 41.667 0.00 0.00 0.00 4.10
2984 3240 2.925724 TCAACGGTTCATCACTGGTTT 58.074 42.857 0.00 0.00 35.83 3.27
2995 3251 5.437060 TCATCACTGGTTTATAAGGCCTTC 58.563 41.667 24.49 6.97 0.00 3.46
3008 3264 3.515602 AGGCCTTCAATCTGAAAGTGT 57.484 42.857 0.00 0.00 35.73 3.55
3010 3266 3.823304 AGGCCTTCAATCTGAAAGTGTTC 59.177 43.478 0.00 0.00 35.73 3.18
3011 3267 3.823304 GGCCTTCAATCTGAAAGTGTTCT 59.177 43.478 0.00 0.00 35.73 3.01
3012 3268 4.320788 GGCCTTCAATCTGAAAGTGTTCTG 60.321 45.833 0.00 0.00 35.73 3.02
3014 3270 5.009010 GCCTTCAATCTGAAAGTGTTCTGAA 59.991 40.000 0.99 0.00 42.75 3.02
3015 3271 6.433766 CCTTCAATCTGAAAGTGTTCTGAAC 58.566 40.000 13.49 13.49 42.75 3.18
3017 3273 7.255381 CCTTCAATCTGAAAGTGTTCTGAACAT 60.255 37.037 24.44 10.40 42.75 2.71
3018 3274 7.572523 TCAATCTGAAAGTGTTCTGAACATT 57.427 32.000 24.44 18.32 44.35 2.71
3019 3275 7.420002 TCAATCTGAAAGTGTTCTGAACATTG 58.580 34.615 24.44 20.06 44.35 2.82
3020 3276 5.756195 TCTGAAAGTGTTCTGAACATTGG 57.244 39.130 24.44 12.32 44.35 3.16
3021 3277 4.036734 TCTGAAAGTGTTCTGAACATTGGC 59.963 41.667 24.44 15.97 44.35 4.52
3022 3278 3.953612 TGAAAGTGTTCTGAACATTGGCT 59.046 39.130 24.44 14.56 44.35 4.75
3023 3279 4.402155 TGAAAGTGTTCTGAACATTGGCTT 59.598 37.500 24.44 18.93 44.35 4.35
3024 3280 5.105392 TGAAAGTGTTCTGAACATTGGCTTT 60.105 36.000 24.70 24.70 44.35 3.51
3025 3281 6.096141 TGAAAGTGTTCTGAACATTGGCTTTA 59.904 34.615 24.58 15.74 44.35 1.85
3026 3282 6.655078 AAGTGTTCTGAACATTGGCTTTAT 57.345 33.333 24.44 2.81 44.35 1.40
3027 3283 6.655078 AGTGTTCTGAACATTGGCTTTATT 57.345 33.333 24.44 0.00 44.35 1.40
3028 3284 7.759489 AGTGTTCTGAACATTGGCTTTATTA 57.241 32.000 24.44 0.00 44.35 0.98
3029 3285 7.820648 AGTGTTCTGAACATTGGCTTTATTAG 58.179 34.615 24.44 0.00 44.35 1.73
3030 3286 7.029563 GTGTTCTGAACATTGGCTTTATTAGG 58.970 38.462 24.44 0.00 44.35 2.69
3031 3287 6.945435 TGTTCTGAACATTGGCTTTATTAGGA 59.055 34.615 18.69 0.00 36.25 2.94
3032 3288 7.450014 TGTTCTGAACATTGGCTTTATTAGGAA 59.550 33.333 18.69 0.00 36.25 3.36
3033 3289 7.391148 TCTGAACATTGGCTTTATTAGGAAC 57.609 36.000 0.00 0.00 0.00 3.62
3034 3290 6.945435 TCTGAACATTGGCTTTATTAGGAACA 59.055 34.615 0.00 0.00 0.00 3.18
3035 3291 7.615365 TCTGAACATTGGCTTTATTAGGAACAT 59.385 33.333 0.00 0.00 0.00 2.71
3036 3292 8.133024 TGAACATTGGCTTTATTAGGAACATT 57.867 30.769 0.00 0.00 0.00 2.71
3037 3293 8.034215 TGAACATTGGCTTTATTAGGAACATTG 58.966 33.333 0.00 0.00 0.00 2.82
3038 3294 7.480760 ACATTGGCTTTATTAGGAACATTGT 57.519 32.000 0.00 0.00 0.00 2.71
3039 3295 7.322664 ACATTGGCTTTATTAGGAACATTGTG 58.677 34.615 0.00 0.00 0.00 3.33
3040 3296 5.323371 TGGCTTTATTAGGAACATTGTGC 57.677 39.130 0.00 0.00 0.00 4.57
3041 3297 4.769488 TGGCTTTATTAGGAACATTGTGCA 59.231 37.500 0.00 0.00 0.00 4.57
3042 3298 5.244851 TGGCTTTATTAGGAACATTGTGCAA 59.755 36.000 0.00 0.00 0.00 4.08
3043 3299 6.162777 GGCTTTATTAGGAACATTGTGCAAA 58.837 36.000 0.00 0.00 0.00 3.68
3044 3300 6.648725 GGCTTTATTAGGAACATTGTGCAAAA 59.351 34.615 0.00 0.00 0.00 2.44
3045 3301 7.334171 GGCTTTATTAGGAACATTGTGCAAAAT 59.666 33.333 0.00 0.00 0.00 1.82
3046 3302 8.720562 GCTTTATTAGGAACATTGTGCAAAATT 58.279 29.630 0.00 0.00 0.00 1.82
3050 3306 8.907222 ATTAGGAACATTGTGCAAAATTTTCT 57.093 26.923 21.98 15.23 30.43 2.52
3051 3307 6.607735 AGGAACATTGTGCAAAATTTTCTG 57.392 33.333 21.98 6.97 30.43 3.02
3052 3308 6.347696 AGGAACATTGTGCAAAATTTTCTGA 58.652 32.000 21.98 0.00 30.43 3.27
3053 3309 6.993902 AGGAACATTGTGCAAAATTTTCTGAT 59.006 30.769 21.98 10.35 30.43 2.90
3054 3310 7.499895 AGGAACATTGTGCAAAATTTTCTGATT 59.500 29.630 21.98 8.23 30.43 2.57
3055 3311 7.799914 GGAACATTGTGCAAAATTTTCTGATTC 59.200 33.333 21.98 7.04 30.43 2.52
3056 3312 7.789273 ACATTGTGCAAAATTTTCTGATTCA 57.211 28.000 0.00 0.00 0.00 2.57
3057 3313 7.857569 ACATTGTGCAAAATTTTCTGATTCAG 58.142 30.769 7.38 7.38 0.00 3.02
3063 3319 6.017770 TGCAAAATTTTCTGATTCAGCTTTGG 60.018 34.615 8.89 5.23 0.00 3.28
3064 3320 6.368213 CAAAATTTTCTGATTCAGCTTTGGC 58.632 36.000 8.89 0.00 39.06 4.52
3094 3350 3.719924 TCAGCTGCCTGACAAATTTTTG 58.280 40.909 9.47 1.56 42.98 2.44
3095 3351 3.384146 TCAGCTGCCTGACAAATTTTTGA 59.616 39.130 9.47 0.00 42.98 2.69
3096 3352 4.121317 CAGCTGCCTGACAAATTTTTGAA 58.879 39.130 0.00 0.00 41.77 2.69
3097 3353 4.571580 CAGCTGCCTGACAAATTTTTGAAA 59.428 37.500 0.00 0.00 41.77 2.69
3098 3354 5.064962 CAGCTGCCTGACAAATTTTTGAAAA 59.935 36.000 0.00 0.00 41.77 2.29
3099 3355 5.647225 AGCTGCCTGACAAATTTTTGAAAAA 59.353 32.000 5.47 5.47 40.55 1.94
3100 3356 5.738693 GCTGCCTGACAAATTTTTGAAAAAC 59.261 36.000 5.08 0.00 40.55 2.43
3101 3357 6.403527 GCTGCCTGACAAATTTTTGAAAAACT 60.404 34.615 5.08 0.00 40.55 2.66
3102 3358 7.446001 TGCCTGACAAATTTTTGAAAAACTT 57.554 28.000 5.08 0.00 40.55 2.66
3103 3359 8.553459 TGCCTGACAAATTTTTGAAAAACTTA 57.447 26.923 5.08 0.00 40.55 2.24
3104 3360 8.447053 TGCCTGACAAATTTTTGAAAAACTTAC 58.553 29.630 5.08 0.58 40.55 2.34
3105 3361 8.447053 GCCTGACAAATTTTTGAAAAACTTACA 58.553 29.630 5.08 4.77 40.55 2.41
3118 3374 7.411274 TGAAAAACTTACATGTTACGGACAAG 58.589 34.615 2.30 1.85 42.62 3.16
3119 3375 7.280428 TGAAAAACTTACATGTTACGGACAAGA 59.720 33.333 2.30 0.00 42.62 3.02
3120 3376 6.780706 AAACTTACATGTTACGGACAAGAG 57.219 37.500 2.30 1.23 42.62 2.85
3121 3377 4.243270 ACTTACATGTTACGGACAAGAGC 58.757 43.478 2.30 0.00 42.62 4.09
3122 3378 1.710013 ACATGTTACGGACAAGAGCG 58.290 50.000 0.00 0.00 42.62 5.03
3126 3382 3.034721 TGTTACGGACAAGAGCGAAAT 57.965 42.857 0.00 0.00 34.69 2.17
3127 3383 2.734606 TGTTACGGACAAGAGCGAAATG 59.265 45.455 0.00 0.00 34.69 2.32
3128 3384 1.355971 TACGGACAAGAGCGAAATGC 58.644 50.000 0.00 0.00 46.98 3.56
3178 3653 5.473796 GCATTGGCTTTATTTGGAATGTG 57.526 39.130 0.00 0.00 36.96 3.21
3179 3654 4.201841 GCATTGGCTTTATTTGGAATGTGC 60.202 41.667 0.00 0.00 36.96 4.57
3180 3655 4.613925 TTGGCTTTATTTGGAATGTGCA 57.386 36.364 0.00 0.00 0.00 4.57
3181 3656 4.822685 TGGCTTTATTTGGAATGTGCAT 57.177 36.364 0.00 0.00 0.00 3.96
3182 3657 5.163281 TGGCTTTATTTGGAATGTGCATT 57.837 34.783 0.00 0.00 0.00 3.56
3183 3658 4.936411 TGGCTTTATTTGGAATGTGCATTG 59.064 37.500 1.77 0.00 0.00 2.82
3184 3659 4.333372 GGCTTTATTTGGAATGTGCATTGG 59.667 41.667 1.77 0.00 0.00 3.16
3185 3660 4.201841 GCTTTATTTGGAATGTGCATTGGC 60.202 41.667 1.77 0.00 41.68 4.52
3198 3673 3.806625 GCATTGGCATATTTGGACAGT 57.193 42.857 0.00 0.00 40.72 3.55
3199 3674 4.916983 GCATTGGCATATTTGGACAGTA 57.083 40.909 0.00 0.00 40.72 2.74
3200 3675 5.261209 GCATTGGCATATTTGGACAGTAA 57.739 39.130 0.00 0.00 40.72 2.24
3201 3676 5.284079 GCATTGGCATATTTGGACAGTAAG 58.716 41.667 0.00 0.00 40.72 2.34
3202 3677 4.981806 TTGGCATATTTGGACAGTAAGC 57.018 40.909 0.00 0.00 0.00 3.09
3203 3678 3.287222 TGGCATATTTGGACAGTAAGCC 58.713 45.455 0.00 0.00 39.95 4.35
3204 3679 3.287222 GGCATATTTGGACAGTAAGCCA 58.713 45.455 0.00 0.00 39.35 4.75
3205 3680 3.699038 GGCATATTTGGACAGTAAGCCAA 59.301 43.478 0.00 0.00 42.11 4.52
3243 3718 1.398041 GAATGTGCATTAGCTGACGCA 59.602 47.619 0.00 0.00 42.74 5.24
3245 3720 0.728542 TGTGCATTAGCTGACGCATG 59.271 50.000 1.59 0.00 42.74 4.06
3246 3721 0.729116 GTGCATTAGCTGACGCATGT 59.271 50.000 1.59 0.00 42.74 3.21
3257 3732 5.581605 AGCTGACGCATGTAAATAATTTGG 58.418 37.500 0.00 0.00 39.10 3.28
3258 3733 5.125417 AGCTGACGCATGTAAATAATTTGGT 59.875 36.000 0.00 0.00 39.10 3.67
3259 3734 5.455525 GCTGACGCATGTAAATAATTTGGTC 59.544 40.000 0.00 0.00 35.78 4.02
3272 3747 8.887036 AAATAATTTGGTCTCTGGTTCAAAAC 57.113 30.769 0.00 0.00 33.62 2.43
3300 3775 9.671279 TGTATATATTACATGAATGCTCCTTGG 57.329 33.333 0.00 0.00 0.00 3.61
3301 3776 5.972107 ATATTACATGAATGCTCCTTGGC 57.028 39.130 0.00 0.00 0.00 4.52
3303 3778 1.927487 ACATGAATGCTCCTTGGCAA 58.073 45.000 0.00 0.00 45.68 4.52
3304 3779 1.547372 ACATGAATGCTCCTTGGCAAC 59.453 47.619 0.00 0.00 45.68 4.17
3317 3792 1.959848 GGCAACAACTCTCCTTGGC 59.040 57.895 0.00 0.00 33.86 4.52
3318 3793 0.823356 GGCAACAACTCTCCTTGGCA 60.823 55.000 0.00 0.00 39.59 4.92
3319 3794 1.032014 GCAACAACTCTCCTTGGCAA 58.968 50.000 0.00 0.00 0.00 4.52
3323 3798 1.490490 ACAACTCTCCTTGGCAACTCA 59.510 47.619 0.00 0.00 37.61 3.41
3324 3799 2.107204 ACAACTCTCCTTGGCAACTCAT 59.893 45.455 0.00 0.00 37.61 2.90
3325 3800 3.152341 CAACTCTCCTTGGCAACTCATT 58.848 45.455 0.00 0.00 37.61 2.57
3326 3801 3.064900 ACTCTCCTTGGCAACTCATTC 57.935 47.619 0.00 0.00 37.61 2.67
3327 3802 2.641815 ACTCTCCTTGGCAACTCATTCT 59.358 45.455 0.00 0.00 37.61 2.40
3328 3803 3.008330 CTCTCCTTGGCAACTCATTCTG 58.992 50.000 0.00 0.00 37.61 3.02
3329 3804 2.639347 TCTCCTTGGCAACTCATTCTGA 59.361 45.455 0.00 0.00 37.61 3.27
3330 3805 2.746362 CTCCTTGGCAACTCATTCTGAC 59.254 50.000 0.00 0.00 37.61 3.51
3331 3806 2.373169 TCCTTGGCAACTCATTCTGACT 59.627 45.455 0.00 0.00 37.61 3.41
3332 3807 3.582647 TCCTTGGCAACTCATTCTGACTA 59.417 43.478 0.00 0.00 37.61 2.59
3333 3808 4.225942 TCCTTGGCAACTCATTCTGACTAT 59.774 41.667 0.00 0.00 37.61 2.12
3334 3809 4.334759 CCTTGGCAACTCATTCTGACTATG 59.665 45.833 0.00 0.00 37.61 2.23
3335 3810 4.558226 TGGCAACTCATTCTGACTATGT 57.442 40.909 0.00 0.00 37.61 2.29
3336 3811 4.256110 TGGCAACTCATTCTGACTATGTG 58.744 43.478 0.00 0.00 37.61 3.21
3337 3812 4.020307 TGGCAACTCATTCTGACTATGTGA 60.020 41.667 0.00 0.00 37.61 3.58
3339 3814 5.007430 GGCAACTCATTCTGACTATGTGATG 59.993 44.000 0.00 0.00 0.00 3.07
3342 3817 6.535963 ACTCATTCTGACTATGTGATGTCA 57.464 37.500 0.00 0.00 40.39 3.58
3343 3818 6.939622 ACTCATTCTGACTATGTGATGTCAA 58.060 36.000 0.00 0.00 41.80 3.18
3345 3820 7.332926 ACTCATTCTGACTATGTGATGTCAAAC 59.667 37.037 0.00 0.00 41.80 2.93
3346 3821 7.160726 TCATTCTGACTATGTGATGTCAAACA 58.839 34.615 0.00 0.00 41.80 2.83
3347 3822 7.661027 TCATTCTGACTATGTGATGTCAAACAA 59.339 33.333 0.00 0.00 41.80 2.83
3348 3823 7.800155 TTCTGACTATGTGATGTCAAACAAA 57.200 32.000 0.00 0.00 41.80 2.83
3349 3824 7.800155 TCTGACTATGTGATGTCAAACAAAA 57.200 32.000 0.00 0.00 41.80 2.44
3350 3825 7.864686 TCTGACTATGTGATGTCAAACAAAAG 58.135 34.615 0.00 1.31 41.80 2.27
3351 3826 7.714813 TCTGACTATGTGATGTCAAACAAAAGA 59.285 33.333 0.00 0.00 41.80 2.52
3352 3827 8.219546 TGACTATGTGATGTCAAACAAAAGAA 57.780 30.769 0.00 0.51 39.82 2.52
3353 3828 8.681806 TGACTATGTGATGTCAAACAAAAGAAA 58.318 29.630 0.00 0.00 39.82 2.52
3354 3829 9.515020 GACTATGTGATGTCAAACAAAAGAAAA 57.485 29.630 9.74 0.00 33.75 2.29
3355 3830 9.868277 ACTATGTGATGTCAAACAAAAGAAAAA 57.132 25.926 9.74 0.00 0.00 1.94
3377 3852 8.976986 AAAAACTCATTCTGACTGCATTTATC 57.023 30.769 0.00 0.00 0.00 1.75
3378 3853 6.690194 AACTCATTCTGACTGCATTTATCC 57.310 37.500 0.00 0.00 0.00 2.59
3379 3854 5.748402 ACTCATTCTGACTGCATTTATCCA 58.252 37.500 0.00 0.00 0.00 3.41
3380 3855 6.363065 ACTCATTCTGACTGCATTTATCCAT 58.637 36.000 0.00 0.00 0.00 3.41
3381 3856 6.832384 ACTCATTCTGACTGCATTTATCCATT 59.168 34.615 0.00 0.00 0.00 3.16
3382 3857 7.994911 ACTCATTCTGACTGCATTTATCCATTA 59.005 33.333 0.00 0.00 0.00 1.90
3383 3858 8.158169 TCATTCTGACTGCATTTATCCATTAC 57.842 34.615 0.00 0.00 0.00 1.89
3384 3859 7.774625 TCATTCTGACTGCATTTATCCATTACA 59.225 33.333 0.00 0.00 0.00 2.41
3434 3909 1.579698 CCCTGATGAATCTGAGCACG 58.420 55.000 0.00 0.00 0.00 5.34
3442 3917 5.750547 TGATGAATCTGAGCACGAAATACTC 59.249 40.000 0.00 0.00 0.00 2.59
3443 3918 5.072040 TGAATCTGAGCACGAAATACTCA 57.928 39.130 0.00 0.00 38.09 3.41
3479 3954 1.949465 ACCCTAATTTCATCGACGCC 58.051 50.000 0.00 0.00 0.00 5.68
3524 4000 3.711863 TCCCCTTATTCTTGCATGCTTT 58.288 40.909 20.33 1.61 0.00 3.51
3530 4006 5.579511 CCTTATTCTTGCATGCTTTTCAAGG 59.420 40.000 20.33 18.31 38.13 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.818363 GGTTTTCCGCCGGATCTCC 60.818 63.158 6.69 5.94 0.00 3.71
50 51 3.809423 GGTTTTCCGCCGGATCTC 58.191 61.111 6.69 0.00 0.00 2.75
60 61 1.572941 GTGAAGTCGCCGGTTTTCC 59.427 57.895 1.90 0.00 0.00 3.13
61 62 1.572941 GGTGAAGTCGCCGGTTTTC 59.427 57.895 1.90 2.92 36.72 2.29
62 63 3.740513 GGTGAAGTCGCCGGTTTT 58.259 55.556 1.90 0.00 36.72 2.43
70 71 2.430921 AAGAGCGCGGTGAAGTCG 60.431 61.111 18.92 0.00 0.00 4.18
71 72 1.664965 ACAAGAGCGCGGTGAAGTC 60.665 57.895 18.92 0.00 0.00 3.01
72 73 1.956170 CACAAGAGCGCGGTGAAGT 60.956 57.895 18.92 8.03 34.52 3.01
73 74 2.671177 CCACAAGAGCGCGGTGAAG 61.671 63.158 18.92 7.28 34.52 3.02
74 75 2.664851 CCACAAGAGCGCGGTGAA 60.665 61.111 18.92 0.00 34.52 3.18
82 83 3.056328 GAACCGGGCCACAAGAGC 61.056 66.667 6.32 0.00 0.00 4.09
83 84 1.073199 AAGAACCGGGCCACAAGAG 59.927 57.895 6.32 0.00 0.00 2.85
84 85 1.228124 CAAGAACCGGGCCACAAGA 60.228 57.895 6.32 0.00 0.00 3.02
85 86 1.515521 GACAAGAACCGGGCCACAAG 61.516 60.000 6.32 0.00 0.00 3.16
86 87 1.527380 GACAAGAACCGGGCCACAA 60.527 57.895 6.32 0.00 0.00 3.33
87 88 1.990160 AAGACAAGAACCGGGCCACA 61.990 55.000 6.32 0.00 0.00 4.17
88 89 1.228154 AAGACAAGAACCGGGCCAC 60.228 57.895 6.32 0.00 0.00 5.01
89 90 1.072505 GAAGACAAGAACCGGGCCA 59.927 57.895 6.32 0.00 0.00 5.36
90 91 1.674651 GGAAGACAAGAACCGGGCC 60.675 63.158 6.32 0.00 0.00 5.80
91 92 0.955919 CAGGAAGACAAGAACCGGGC 60.956 60.000 6.32 0.00 0.00 6.13
92 93 0.955919 GCAGGAAGACAAGAACCGGG 60.956 60.000 6.32 0.00 0.00 5.73
93 94 1.291877 CGCAGGAAGACAAGAACCGG 61.292 60.000 0.00 0.00 0.00 5.28
94 95 0.600255 ACGCAGGAAGACAAGAACCG 60.600 55.000 0.00 0.00 0.00 4.44
95 96 1.149148 GACGCAGGAAGACAAGAACC 58.851 55.000 0.00 0.00 0.00 3.62
96 97 0.784778 CGACGCAGGAAGACAAGAAC 59.215 55.000 0.00 0.00 0.00 3.01
97 98 0.671796 TCGACGCAGGAAGACAAGAA 59.328 50.000 0.00 0.00 0.00 2.52
98 99 0.888619 ATCGACGCAGGAAGACAAGA 59.111 50.000 0.00 0.00 0.00 3.02
99 100 0.994995 CATCGACGCAGGAAGACAAG 59.005 55.000 0.00 0.00 0.00 3.16
100 101 1.014044 GCATCGACGCAGGAAGACAA 61.014 55.000 0.00 0.00 0.00 3.18
101 102 1.446099 GCATCGACGCAGGAAGACA 60.446 57.895 0.00 0.00 0.00 3.41
102 103 1.142778 GAGCATCGACGCAGGAAGAC 61.143 60.000 6.14 0.00 0.00 3.01
103 104 1.139734 GAGCATCGACGCAGGAAGA 59.860 57.895 6.14 0.00 0.00 2.87
104 105 0.529337 ATGAGCATCGACGCAGGAAG 60.529 55.000 6.14 0.00 38.61 3.46
105 106 0.807275 CATGAGCATCGACGCAGGAA 60.807 55.000 6.14 0.00 38.61 3.36
106 107 1.227060 CATGAGCATCGACGCAGGA 60.227 57.895 6.14 0.00 38.61 3.86
107 108 2.879070 GCATGAGCATCGACGCAGG 61.879 63.158 6.14 0.00 41.58 4.85
108 109 1.819226 GAGCATGAGCATCGACGCAG 61.819 60.000 6.14 0.00 45.49 5.18
109 110 1.879884 GAGCATGAGCATCGACGCA 60.880 57.895 6.14 0.00 45.49 5.24
110 111 1.591059 AGAGCATGAGCATCGACGC 60.591 57.895 0.00 0.00 45.49 5.19
111 112 1.213733 CCAGAGCATGAGCATCGACG 61.214 60.000 0.00 0.00 45.49 5.12
112 113 0.179089 ACCAGAGCATGAGCATCGAC 60.179 55.000 0.00 0.00 45.49 4.20
113 114 0.103755 GACCAGAGCATGAGCATCGA 59.896 55.000 0.00 0.00 45.49 3.59
114 115 0.879400 GGACCAGAGCATGAGCATCG 60.879 60.000 0.00 0.00 45.49 3.84
115 116 0.879400 CGGACCAGAGCATGAGCATC 60.879 60.000 0.00 0.00 45.49 3.91
116 117 1.145598 CGGACCAGAGCATGAGCAT 59.854 57.895 0.00 0.00 45.49 3.79
117 118 2.580815 CGGACCAGAGCATGAGCA 59.419 61.111 0.00 0.00 45.49 4.26
118 119 2.894387 GCGGACCAGAGCATGAGC 60.894 66.667 0.00 0.00 42.56 4.26
119 120 2.202987 GGCGGACCAGAGCATGAG 60.203 66.667 0.00 0.00 35.26 2.90
120 121 4.147449 CGGCGGACCAGAGCATGA 62.147 66.667 0.00 0.00 34.57 3.07
151 152 4.112341 CAAGAAGCGGCAGCCAGC 62.112 66.667 13.30 15.80 46.67 4.85
152 153 3.437795 CCAAGAAGCGGCAGCCAG 61.438 66.667 13.30 5.53 46.67 4.85
161 162 4.112341 CAGCGGCAGCCAAGAAGC 62.112 66.667 13.30 6.16 46.67 3.86
162 163 4.112341 GCAGCGGCAGCCAAGAAG 62.112 66.667 13.30 0.00 46.67 2.85
199 200 4.157120 ATCTACGCGGGGTGTGGC 62.157 66.667 12.47 0.00 0.00 5.01
200 201 2.106332 GATCTACGCGGGGTGTGG 59.894 66.667 12.47 0.00 0.00 4.17
201 202 2.106332 GGATCTACGCGGGGTGTG 59.894 66.667 12.47 1.14 0.00 3.82
202 203 3.524606 CGGATCTACGCGGGGTGT 61.525 66.667 12.47 0.00 0.00 4.16
230 231 2.046507 AGCACTGTAGCAGCCAGC 60.047 61.111 0.00 0.00 46.19 4.85
231 232 1.808799 CGAGCACTGTAGCAGCCAG 60.809 63.158 0.00 0.00 34.37 4.85
232 233 2.262603 CGAGCACTGTAGCAGCCA 59.737 61.111 0.00 0.00 34.37 4.75
233 234 2.510238 CCGAGCACTGTAGCAGCC 60.510 66.667 0.00 0.00 34.37 4.85
234 235 3.191539 GCCGAGCACTGTAGCAGC 61.192 66.667 5.32 0.00 34.37 5.25
235 236 2.882777 CGCCGAGCACTGTAGCAG 60.883 66.667 5.32 0.00 37.52 4.24
236 237 3.370231 TCGCCGAGCACTGTAGCA 61.370 61.111 5.32 0.00 36.85 3.49
237 238 2.881352 GTCGCCGAGCACTGTAGC 60.881 66.667 0.00 0.00 0.00 3.58
238 239 2.202623 GGTCGCCGAGCACTGTAG 60.203 66.667 11.99 0.00 0.00 2.74
292 293 3.944250 AATGGGCAGGCGAACAGGG 62.944 63.158 0.00 0.00 0.00 4.45
293 294 2.361610 AATGGGCAGGCGAACAGG 60.362 61.111 0.00 0.00 0.00 4.00
294 295 1.973281 ACAATGGGCAGGCGAACAG 60.973 57.895 0.00 0.00 0.00 3.16
295 296 2.115052 ACAATGGGCAGGCGAACA 59.885 55.556 0.00 0.00 0.00 3.18
296 297 1.805428 AACACAATGGGCAGGCGAAC 61.805 55.000 0.00 0.00 0.00 3.95
297 298 1.530419 AACACAATGGGCAGGCGAA 60.530 52.632 0.00 0.00 0.00 4.70
298 299 2.115052 AACACAATGGGCAGGCGA 59.885 55.556 0.00 0.00 0.00 5.54
299 300 2.259204 CAACACAATGGGCAGGCG 59.741 61.111 0.00 0.00 0.00 5.52
300 301 1.005867 CACAACACAATGGGCAGGC 60.006 57.895 0.00 0.00 0.00 4.85
305 306 0.827089 TGGAGGCACAACACAATGGG 60.827 55.000 0.00 0.00 0.00 4.00
306 307 0.314935 GTGGAGGCACAACACAATGG 59.685 55.000 0.00 0.00 37.23 3.16
307 308 0.040157 CGTGGAGGCACAACACAATG 60.040 55.000 0.00 0.00 37.13 2.82
308 309 1.795170 GCGTGGAGGCACAACACAAT 61.795 55.000 0.00 0.00 37.13 2.71
309 310 2.477176 GCGTGGAGGCACAACACAA 61.477 57.895 0.00 0.00 37.13 3.33
310 311 2.899838 GCGTGGAGGCACAACACA 60.900 61.111 0.00 0.00 37.13 3.72
311 312 2.591715 AGCGTGGAGGCACAACAC 60.592 61.111 0.00 0.00 34.66 3.32
312 313 2.591429 CAGCGTGGAGGCACAACA 60.591 61.111 0.00 0.00 34.64 3.33
313 314 4.030452 GCAGCGTGGAGGCACAAC 62.030 66.667 0.00 0.00 34.64 3.32
314 315 3.772853 AAGCAGCGTGGAGGCACAA 62.773 57.895 0.00 0.00 34.64 3.33
315 316 4.254709 AAGCAGCGTGGAGGCACA 62.255 61.111 0.00 0.00 34.64 4.57
316 317 3.426568 GAAGCAGCGTGGAGGCAC 61.427 66.667 0.00 0.00 34.64 5.01
317 318 4.704833 GGAAGCAGCGTGGAGGCA 62.705 66.667 0.00 0.00 34.64 4.75
318 319 4.400961 AGGAAGCAGCGTGGAGGC 62.401 66.667 0.00 0.00 0.00 4.70
319 320 2.435586 CAGGAAGCAGCGTGGAGG 60.436 66.667 0.00 0.00 0.00 4.30
320 321 3.123620 GCAGGAAGCAGCGTGGAG 61.124 66.667 0.00 0.00 44.79 3.86
329 330 3.939592 AGAAGTAATAAACGGCAGGAAGC 59.060 43.478 0.00 0.00 44.65 3.86
330 331 5.063564 GTGAGAAGTAATAAACGGCAGGAAG 59.936 44.000 0.00 0.00 0.00 3.46
331 332 4.933400 GTGAGAAGTAATAAACGGCAGGAA 59.067 41.667 0.00 0.00 0.00 3.36
332 333 4.501071 GTGAGAAGTAATAAACGGCAGGA 58.499 43.478 0.00 0.00 0.00 3.86
333 334 3.306166 CGTGAGAAGTAATAAACGGCAGG 59.694 47.826 0.00 0.00 0.00 4.85
334 335 3.306166 CCGTGAGAAGTAATAAACGGCAG 59.694 47.826 0.00 0.00 43.37 4.85
335 336 3.255725 CCGTGAGAAGTAATAAACGGCA 58.744 45.455 0.00 0.00 43.37 5.69
336 337 3.920112 CCGTGAGAAGTAATAAACGGC 57.080 47.619 0.00 0.00 43.37 5.68
338 339 2.280708 CGGCCGTGAGAAGTAATAAACG 59.719 50.000 19.50 0.00 0.00 3.60
339 340 2.606272 CCGGCCGTGAGAAGTAATAAAC 59.394 50.000 26.12 0.00 0.00 2.01
340 341 2.896168 CCGGCCGTGAGAAGTAATAAA 58.104 47.619 26.12 0.00 0.00 1.40
341 342 1.472026 GCCGGCCGTGAGAAGTAATAA 60.472 52.381 26.12 0.00 0.00 1.40
342 343 0.103572 GCCGGCCGTGAGAAGTAATA 59.896 55.000 26.12 0.00 0.00 0.98
343 344 1.153429 GCCGGCCGTGAGAAGTAAT 60.153 57.895 26.12 0.00 0.00 1.89
344 345 1.823169 AAGCCGGCCGTGAGAAGTAA 61.823 55.000 26.15 0.00 0.00 2.24
345 346 2.280552 AAGCCGGCCGTGAGAAGTA 61.281 57.895 26.15 0.00 0.00 2.24
346 347 3.626924 AAGCCGGCCGTGAGAAGT 61.627 61.111 26.15 0.00 0.00 3.01
347 348 3.121030 CAAGCCGGCCGTGAGAAG 61.121 66.667 26.15 8.60 0.00 2.85
348 349 4.697756 CCAAGCCGGCCGTGAGAA 62.698 66.667 26.15 0.00 0.00 2.87
375 376 3.508840 CAATCAGCGGCCGGGAAC 61.509 66.667 29.38 10.23 0.00 3.62
385 386 2.508891 CGACCGACGAGCAATCAGC 61.509 63.158 0.00 0.00 45.77 4.26
386 387 1.874019 CCGACCGACGAGCAATCAG 60.874 63.158 0.00 0.00 45.77 2.90
387 388 2.180769 CCGACCGACGAGCAATCA 59.819 61.111 0.00 0.00 45.77 2.57
388 389 2.582498 CCCGACCGACGAGCAATC 60.582 66.667 0.00 0.00 45.77 2.67
389 390 4.814294 GCCCGACCGACGAGCAAT 62.814 66.667 0.00 0.00 44.80 3.56
406 407 1.973281 AAATCAGGCGCTGGTGGTG 60.973 57.895 7.64 0.00 31.51 4.17
407 408 1.973281 CAAATCAGGCGCTGGTGGT 60.973 57.895 7.64 0.00 31.51 4.16
408 409 2.703798 CCAAATCAGGCGCTGGTGG 61.704 63.158 7.64 8.65 31.51 4.61
409 410 2.703798 CCCAAATCAGGCGCTGGTG 61.704 63.158 7.64 2.63 31.51 4.17
410 411 1.847798 TACCCAAATCAGGCGCTGGT 61.848 55.000 7.64 0.00 31.51 4.00
411 412 1.077787 TACCCAAATCAGGCGCTGG 60.078 57.895 7.64 5.62 31.51 4.85
412 413 0.392998 AGTACCCAAATCAGGCGCTG 60.393 55.000 7.64 3.67 0.00 5.18
413 414 0.328258 AAGTACCCAAATCAGGCGCT 59.672 50.000 7.64 0.00 0.00 5.92
414 415 0.733150 GAAGTACCCAAATCAGGCGC 59.267 55.000 0.00 0.00 0.00 6.53
415 416 1.379527 GGAAGTACCCAAATCAGGCG 58.620 55.000 0.00 0.00 0.00 5.52
426 427 3.967987 ACATCATAGACCTGGGAAGTACC 59.032 47.826 0.00 0.00 38.08 3.34
427 428 4.261656 CGACATCATAGACCTGGGAAGTAC 60.262 50.000 0.00 0.00 0.00 2.73
428 429 3.889538 CGACATCATAGACCTGGGAAGTA 59.110 47.826 0.00 0.00 0.00 2.24
429 430 2.695666 CGACATCATAGACCTGGGAAGT 59.304 50.000 0.00 0.00 0.00 3.01
430 431 2.695666 ACGACATCATAGACCTGGGAAG 59.304 50.000 0.00 0.00 0.00 3.46
431 432 2.747177 ACGACATCATAGACCTGGGAA 58.253 47.619 0.00 0.00 0.00 3.97
432 433 2.454336 ACGACATCATAGACCTGGGA 57.546 50.000 0.00 0.00 0.00 4.37
433 434 3.543680 AAACGACATCATAGACCTGGG 57.456 47.619 0.00 0.00 0.00 4.45
434 435 4.503910 TCAAAACGACATCATAGACCTGG 58.496 43.478 0.00 0.00 0.00 4.45
435 436 5.007039 CCATCAAAACGACATCATAGACCTG 59.993 44.000 0.00 0.00 0.00 4.00
436 437 5.118990 CCATCAAAACGACATCATAGACCT 58.881 41.667 0.00 0.00 0.00 3.85
437 438 4.876107 ACCATCAAAACGACATCATAGACC 59.124 41.667 0.00 0.00 0.00 3.85
438 439 5.812642 AGACCATCAAAACGACATCATAGAC 59.187 40.000 0.00 0.00 0.00 2.59
439 440 5.812127 CAGACCATCAAAACGACATCATAGA 59.188 40.000 0.00 0.00 0.00 1.98
440 441 5.503031 GCAGACCATCAAAACGACATCATAG 60.503 44.000 0.00 0.00 0.00 2.23
441 442 4.332543 GCAGACCATCAAAACGACATCATA 59.667 41.667 0.00 0.00 0.00 2.15
442 443 3.127548 GCAGACCATCAAAACGACATCAT 59.872 43.478 0.00 0.00 0.00 2.45
443 444 2.483877 GCAGACCATCAAAACGACATCA 59.516 45.455 0.00 0.00 0.00 3.07
444 445 2.483877 TGCAGACCATCAAAACGACATC 59.516 45.455 0.00 0.00 0.00 3.06
445 446 2.503331 TGCAGACCATCAAAACGACAT 58.497 42.857 0.00 0.00 0.00 3.06
446 447 1.960417 TGCAGACCATCAAAACGACA 58.040 45.000 0.00 0.00 0.00 4.35
447 448 2.226437 ACATGCAGACCATCAAAACGAC 59.774 45.455 0.00 0.00 29.71 4.34
448 449 2.503331 ACATGCAGACCATCAAAACGA 58.497 42.857 0.00 0.00 29.71 3.85
449 450 2.995466 ACATGCAGACCATCAAAACG 57.005 45.000 0.00 0.00 29.71 3.60
450 451 5.355071 TCAGATACATGCAGACCATCAAAAC 59.645 40.000 0.00 0.00 29.71 2.43
451 452 5.499313 TCAGATACATGCAGACCATCAAAA 58.501 37.500 0.00 0.00 29.71 2.44
452 453 5.101648 TCAGATACATGCAGACCATCAAA 57.898 39.130 0.00 0.00 29.71 2.69
453 454 4.443881 CCTCAGATACATGCAGACCATCAA 60.444 45.833 0.00 0.00 29.71 2.57
454 455 3.070590 CCTCAGATACATGCAGACCATCA 59.929 47.826 0.00 0.00 29.71 3.07
455 456 3.556633 CCCTCAGATACATGCAGACCATC 60.557 52.174 0.00 0.00 29.71 3.51
456 457 2.371179 CCCTCAGATACATGCAGACCAT 59.629 50.000 0.00 0.00 33.39 3.55
457 458 1.764723 CCCTCAGATACATGCAGACCA 59.235 52.381 0.00 0.00 0.00 4.02
458 459 1.765314 ACCCTCAGATACATGCAGACC 59.235 52.381 0.00 0.00 0.00 3.85
459 460 3.550437 AACCCTCAGATACATGCAGAC 57.450 47.619 0.00 0.00 0.00 3.51
460 461 4.284490 GGATAACCCTCAGATACATGCAGA 59.716 45.833 0.00 0.00 0.00 4.26
461 462 4.040829 TGGATAACCCTCAGATACATGCAG 59.959 45.833 0.00 0.00 35.38 4.41
462 463 3.973305 TGGATAACCCTCAGATACATGCA 59.027 43.478 0.00 0.00 35.38 3.96
463 464 4.319177 GTGGATAACCCTCAGATACATGC 58.681 47.826 0.00 0.00 35.38 4.06
464 465 4.899502 GGTGGATAACCCTCAGATACATG 58.100 47.826 0.00 0.00 44.02 3.21
477 478 0.988832 TGTGGGAGGTGGTGGATAAC 59.011 55.000 0.00 0.00 0.00 1.89
478 479 1.285280 CTGTGGGAGGTGGTGGATAA 58.715 55.000 0.00 0.00 0.00 1.75
479 480 0.118346 ACTGTGGGAGGTGGTGGATA 59.882 55.000 0.00 0.00 0.00 2.59
480 481 0.772124 AACTGTGGGAGGTGGTGGAT 60.772 55.000 0.00 0.00 0.00 3.41
481 482 0.104882 TAACTGTGGGAGGTGGTGGA 60.105 55.000 0.00 0.00 0.00 4.02
482 483 0.991920 ATAACTGTGGGAGGTGGTGG 59.008 55.000 0.00 0.00 0.00 4.61
483 484 2.879103 AATAACTGTGGGAGGTGGTG 57.121 50.000 0.00 0.00 0.00 4.17
484 485 2.986728 AGAAATAACTGTGGGAGGTGGT 59.013 45.455 0.00 0.00 0.00 4.16
485 486 3.721087 AGAAATAACTGTGGGAGGTGG 57.279 47.619 0.00 0.00 0.00 4.61
486 487 4.398319 ACAAGAAATAACTGTGGGAGGTG 58.602 43.478 0.00 0.00 0.00 4.00
487 488 4.652822 GACAAGAAATAACTGTGGGAGGT 58.347 43.478 0.00 0.00 0.00 3.85
488 489 3.684788 CGACAAGAAATAACTGTGGGAGG 59.315 47.826 0.00 0.00 0.00 4.30
489 490 3.684788 CCGACAAGAAATAACTGTGGGAG 59.315 47.826 0.00 0.00 31.38 4.30
490 491 3.325425 TCCGACAAGAAATAACTGTGGGA 59.675 43.478 1.59 1.59 35.56 4.37
491 492 3.670625 TCCGACAAGAAATAACTGTGGG 58.329 45.455 0.00 0.00 0.00 4.61
492 493 4.332819 GGATCCGACAAGAAATAACTGTGG 59.667 45.833 0.00 0.00 0.00 4.17
493 494 4.332819 GGGATCCGACAAGAAATAACTGTG 59.667 45.833 5.45 0.00 0.00 3.66
494 495 4.514401 GGGATCCGACAAGAAATAACTGT 58.486 43.478 5.45 0.00 0.00 3.55
510 511 1.144936 CTCTGCTGGTTCGGGATCC 59.855 63.158 1.92 1.92 0.00 3.36
511 512 0.103937 CTCTCTGCTGGTTCGGGATC 59.896 60.000 0.00 0.00 0.00 3.36
512 513 1.333636 CCTCTCTGCTGGTTCGGGAT 61.334 60.000 0.00 0.00 0.00 3.85
513 514 1.984570 CCTCTCTGCTGGTTCGGGA 60.985 63.158 0.00 0.00 0.00 5.14
514 515 1.544825 TTCCTCTCTGCTGGTTCGGG 61.545 60.000 0.00 0.00 0.00 5.14
515 516 0.321671 TTTCCTCTCTGCTGGTTCGG 59.678 55.000 0.00 0.00 0.00 4.30
516 517 1.001406 ACTTTCCTCTCTGCTGGTTCG 59.999 52.381 0.00 0.00 0.00 3.95
517 518 2.421619 CACTTTCCTCTCTGCTGGTTC 58.578 52.381 0.00 0.00 0.00 3.62
561 562 9.675464 ACTACGAATTTGAATGGAAAATAGGTA 57.325 29.630 0.00 0.00 0.00 3.08
562 563 8.575649 ACTACGAATTTGAATGGAAAATAGGT 57.424 30.769 0.00 0.00 0.00 3.08
563 564 9.289303 CAACTACGAATTTGAATGGAAAATAGG 57.711 33.333 0.00 0.00 0.00 2.57
564 565 9.840427 ACAACTACGAATTTGAATGGAAAATAG 57.160 29.630 0.00 0.00 0.00 1.73
572 573 6.668323 ACAAGGACAACTACGAATTTGAATG 58.332 36.000 0.00 0.00 0.00 2.67
573 574 6.485313 TGACAAGGACAACTACGAATTTGAAT 59.515 34.615 0.00 0.00 0.00 2.57
583 584 2.808543 CCAGCTTGACAAGGACAACTAC 59.191 50.000 16.80 0.00 0.00 2.73
584 585 2.810400 GCCAGCTTGACAAGGACAACTA 60.810 50.000 16.80 0.00 0.00 2.24
585 586 1.972872 CCAGCTTGACAAGGACAACT 58.027 50.000 16.80 2.14 0.00 3.16
586 587 0.312102 GCCAGCTTGACAAGGACAAC 59.688 55.000 16.80 0.00 0.00 3.32
587 588 0.823356 GGCCAGCTTGACAAGGACAA 60.823 55.000 16.80 0.00 0.00 3.18
588 589 1.228245 GGCCAGCTTGACAAGGACA 60.228 57.895 16.80 0.00 0.00 4.02
589 590 0.957888 GAGGCCAGCTTGACAAGGAC 60.958 60.000 16.80 3.49 0.00 3.85
590 591 1.376466 GAGGCCAGCTTGACAAGGA 59.624 57.895 16.80 0.00 0.00 3.36
591 592 0.959372 CTGAGGCCAGCTTGACAAGG 60.959 60.000 16.80 2.52 33.07 3.61
592 593 2.552802 CTGAGGCCAGCTTGACAAG 58.447 57.895 11.02 11.02 33.07 3.16
593 594 4.806936 CTGAGGCCAGCTTGACAA 57.193 55.556 5.01 0.00 33.07 3.18
601 602 1.451567 CCACATCAGCTGAGGCCAG 60.452 63.158 27.27 16.98 43.22 4.85
608 609 1.211969 GCAAGCACCACATCAGCTG 59.788 57.895 7.63 7.63 38.86 4.24
610 611 1.239296 TGAGCAAGCACCACATCAGC 61.239 55.000 0.00 0.00 0.00 4.26
613 614 1.499056 CGTGAGCAAGCACCACATC 59.501 57.895 14.61 0.00 35.37 3.06
631 632 4.856801 ATGGACCGACGCCATGGC 62.857 66.667 27.67 27.67 44.21 4.40
634 635 2.869503 GAACCATGGACCGACGCCAT 62.870 60.000 21.47 1.56 46.76 4.40
635 636 3.599285 GAACCATGGACCGACGCCA 62.599 63.158 21.47 0.00 40.24 5.69
636 637 2.818274 GAACCATGGACCGACGCC 60.818 66.667 21.47 0.00 0.00 5.68
637 638 1.635663 CTTGAACCATGGACCGACGC 61.636 60.000 21.47 0.00 0.00 5.19
638 639 0.320421 ACTTGAACCATGGACCGACG 60.320 55.000 21.47 4.48 0.00 5.12
641 642 1.442769 CTGACTTGAACCATGGACCG 58.557 55.000 21.47 8.35 0.00 4.79
642 643 1.168714 GCTGACTTGAACCATGGACC 58.831 55.000 21.47 9.99 0.00 4.46
643 644 1.537202 GTGCTGACTTGAACCATGGAC 59.463 52.381 21.47 12.58 0.00 4.02
644 645 1.545428 GGTGCTGACTTGAACCATGGA 60.545 52.381 21.47 0.00 35.69 3.41
690 733 9.494271 TTTGCAGGCAATATTTTTATAACAACA 57.506 25.926 7.62 0.00 35.70 3.33
714 757 5.104067 CCAGGGAGGGTTAAGCTATAGTTTT 60.104 44.000 7.17 2.44 0.00 2.43
777 822 9.489084 GTTAAATAAACAAGGGCTTGAAAAGAT 57.511 29.630 0.00 0.00 41.49 2.40
823 868 1.337703 AGACGATCATGCTGAGAGCTC 59.662 52.381 5.27 5.27 42.97 4.09
847 892 2.656632 CGAGTGTTGCGAAAGAAAGACG 60.657 50.000 0.00 0.00 46.92 4.18
876 921 3.806316 ATTTTTCACGGAACAGCTACG 57.194 42.857 0.00 0.00 0.00 3.51
906 952 3.067180 ACAGAGAAACACATGGCTTGTTG 59.933 43.478 2.88 0.89 37.26 3.33
929 975 2.159627 CGAGCAATGTTGTCACCCTAAC 59.840 50.000 0.00 0.00 0.00 2.34
942 988 6.862608 TGCTAAATAATTAATGGCGAGCAATG 59.137 34.615 8.88 0.00 0.00 2.82
993 1039 1.207089 TCACCGTCAGCCATTTCCTAG 59.793 52.381 0.00 0.00 0.00 3.02
1065 1111 6.954487 AAGTAACAGTTTAGGGGAAAGTTG 57.046 37.500 0.00 0.00 0.00 3.16
1087 1242 5.363562 AACAGATGCAGGAGATGACATAA 57.636 39.130 0.00 0.00 0.00 1.90
1088 1243 6.283694 GTTAACAGATGCAGGAGATGACATA 58.716 40.000 0.00 0.00 0.00 2.29
1113 1268 2.460757 ACCACAAGGAAATTGCATGC 57.539 45.000 11.82 11.82 43.15 4.06
1118 1273 8.458843 AGACGATAATAAACCACAAGGAAATTG 58.541 33.333 0.00 0.00 45.01 2.32
1119 1274 8.575649 AGACGATAATAAACCACAAGGAAATT 57.424 30.769 0.00 0.00 38.69 1.82
1124 1279 5.465724 GCCTAGACGATAATAAACCACAAGG 59.534 44.000 0.00 0.00 42.21 3.61
1386 1541 1.669115 CAACACAGGGTGCTCCTCG 60.669 63.158 4.53 0.00 46.12 4.63
1464 1619 2.160417 GGCAGGAACATTGAAAGTCTCG 59.840 50.000 0.00 0.00 0.00 4.04
1497 1652 1.657751 GGGAAAGCACGGCCTGAATC 61.658 60.000 0.00 0.00 0.00 2.52
1546 1701 6.126409 TCACTGAACTAAAATGTGGGAAGTT 58.874 36.000 0.00 0.00 33.26 2.66
1550 1705 4.458989 GCATCACTGAACTAAAATGTGGGA 59.541 41.667 0.00 0.00 0.00 4.37
1551 1706 4.380867 GGCATCACTGAACTAAAATGTGGG 60.381 45.833 0.00 0.00 0.00 4.61
1574 1733 7.615582 TCATGAAGGTAAATTACTGAGCAAG 57.384 36.000 2.96 0.00 0.00 4.01
1579 1738 9.739276 AACAGAATCATGAAGGTAAATTACTGA 57.261 29.630 0.00 0.00 0.00 3.41
1589 1748 6.349611 GCATAACACAACAGAATCATGAAGGT 60.350 38.462 0.00 0.00 0.00 3.50
1594 1753 4.796830 GCAGCATAACACAACAGAATCATG 59.203 41.667 0.00 0.00 0.00 3.07
1606 1765 3.329386 TCAGAAGAGTGCAGCATAACAC 58.671 45.455 0.00 0.00 37.05 3.32
1641 1800 6.222389 TGGCTGAACAATTGATGGTTAAAAG 58.778 36.000 13.59 0.00 0.00 2.27
1683 1842 7.816031 GCAGTATATCAAAATTATGCAAGCCAT 59.184 33.333 0.00 0.00 37.97 4.40
1747 1950 3.191371 CAGCCACAACAAAGTAATCCTCC 59.809 47.826 0.00 0.00 0.00 4.30
1995 2202 3.062763 CTGCTCATAATCAAGGGCTACG 58.937 50.000 0.00 0.00 0.00 3.51
1998 2205 2.106166 CTCCTGCTCATAATCAAGGGCT 59.894 50.000 0.00 0.00 0.00 5.19
2046 2253 1.915952 GCTCGTAGCTCTTCTCAACC 58.084 55.000 0.00 0.00 38.45 3.77
2352 2559 0.629596 ACCCTCCGATCCAGACACTA 59.370 55.000 0.00 0.00 0.00 2.74
2432 2639 4.377897 GTTTCGGGTCAGATGGGTTATAG 58.622 47.826 0.00 0.00 0.00 1.31
2513 2760 0.029567 GGCCAGACTCGTCATACTCG 59.970 60.000 0.00 0.00 0.00 4.18
2577 2824 1.344942 CTAGATGATAACGGCGGCGC 61.345 60.000 32.57 26.17 0.00 6.53
2658 2906 1.135527 ACTCACGTCACGTCTGGAAAA 59.864 47.619 0.00 0.00 38.32 2.29
2695 2943 0.458025 GAGCCGCCACGTATATAGGC 60.458 60.000 3.82 3.82 44.89 3.93
2733 2981 8.276325 GCACAAACATAGATATAGTGTACTTGC 58.724 37.037 0.00 0.00 0.00 4.01
2734 2982 9.313118 TGCACAAACATAGATATAGTGTACTTG 57.687 33.333 0.00 0.00 0.00 3.16
2738 2986 9.830975 ACAATGCACAAACATAGATATAGTGTA 57.169 29.630 0.00 0.00 0.00 2.90
2771 3019 6.319658 AGTTTGACAACTGATCTCACAAACAT 59.680 34.615 17.97 7.30 42.05 2.71
2860 3108 8.791749 TCCTCCCCTCAAAGAAATAATAAAGAT 58.208 33.333 0.00 0.00 0.00 2.40
2862 3110 9.072375 GATCCTCCCCTCAAAGAAATAATAAAG 57.928 37.037 0.00 0.00 0.00 1.85
2863 3111 8.565239 TGATCCTCCCCTCAAAGAAATAATAAA 58.435 33.333 0.00 0.00 0.00 1.40
2872 3122 2.130193 CCATGATCCTCCCCTCAAAGA 58.870 52.381 0.00 0.00 0.00 2.52
2877 3131 4.731313 AATTTACCATGATCCTCCCCTC 57.269 45.455 0.00 0.00 0.00 4.30
2920 3176 2.159014 TGGATGACCACTGTATAACGCC 60.159 50.000 0.00 0.00 41.77 5.68
2958 3214 4.025730 CCAGTGATGAACCGTTGATAATCG 60.026 45.833 0.00 0.00 0.00 3.34
2969 3225 4.338400 GGCCTTATAAACCAGTGATGAACC 59.662 45.833 0.00 0.00 0.00 3.62
2984 3240 6.721318 ACACTTTCAGATTGAAGGCCTTATA 58.279 36.000 20.54 9.94 37.01 0.98
2995 3251 6.639686 CCAATGTTCAGAACACTTTCAGATTG 59.360 38.462 18.49 14.71 45.50 2.67
3008 3264 7.450014 TGTTCCTAATAAAGCCAATGTTCAGAA 59.550 33.333 0.00 0.00 0.00 3.02
3010 3266 7.156876 TGTTCCTAATAAAGCCAATGTTCAG 57.843 36.000 0.00 0.00 0.00 3.02
3011 3267 7.716799 ATGTTCCTAATAAAGCCAATGTTCA 57.283 32.000 0.00 0.00 0.00 3.18
3012 3268 8.034804 ACAATGTTCCTAATAAAGCCAATGTTC 58.965 33.333 0.00 0.00 0.00 3.18
3014 3270 7.322664 CACAATGTTCCTAATAAAGCCAATGT 58.677 34.615 0.00 0.00 0.00 2.71
3015 3271 6.256321 GCACAATGTTCCTAATAAAGCCAATG 59.744 38.462 0.00 0.00 0.00 2.82
3017 3273 5.244851 TGCACAATGTTCCTAATAAAGCCAA 59.755 36.000 0.00 0.00 0.00 4.52
3018 3274 4.769488 TGCACAATGTTCCTAATAAAGCCA 59.231 37.500 0.00 0.00 0.00 4.75
3019 3275 5.323371 TGCACAATGTTCCTAATAAAGCC 57.677 39.130 0.00 0.00 0.00 4.35
3020 3276 7.650834 TTTTGCACAATGTTCCTAATAAAGC 57.349 32.000 0.00 0.00 0.00 3.51
3024 3280 9.995003 AGAAAATTTTGCACAATGTTCCTAATA 57.005 25.926 20.15 0.00 32.59 0.98
3025 3281 8.776470 CAGAAAATTTTGCACAATGTTCCTAAT 58.224 29.630 20.15 4.16 32.59 1.73
3026 3282 7.984050 TCAGAAAATTTTGCACAATGTTCCTAA 59.016 29.630 20.15 7.57 32.59 2.69
3027 3283 7.495901 TCAGAAAATTTTGCACAATGTTCCTA 58.504 30.769 20.15 9.55 32.59 2.94
3028 3284 6.347696 TCAGAAAATTTTGCACAATGTTCCT 58.652 32.000 20.15 8.87 32.59 3.36
3029 3285 6.601741 TCAGAAAATTTTGCACAATGTTCC 57.398 33.333 20.15 7.15 32.59 3.62
3030 3286 8.336806 TGAATCAGAAAATTTTGCACAATGTTC 58.663 29.630 17.32 17.32 32.41 3.18
3031 3287 8.211116 TGAATCAGAAAATTTTGCACAATGTT 57.789 26.923 8.47 0.48 0.00 2.71
3032 3288 7.519328 GCTGAATCAGAAAATTTTGCACAATGT 60.519 33.333 15.38 0.00 32.44 2.71
3033 3289 6.795114 GCTGAATCAGAAAATTTTGCACAATG 59.205 34.615 15.38 0.00 32.44 2.82
3034 3290 6.708949 AGCTGAATCAGAAAATTTTGCACAAT 59.291 30.769 15.38 0.00 32.44 2.71
3035 3291 6.050432 AGCTGAATCAGAAAATTTTGCACAA 58.950 32.000 15.38 0.00 32.44 3.33
3036 3292 5.603596 AGCTGAATCAGAAAATTTTGCACA 58.396 33.333 15.38 0.00 32.44 4.57
3037 3293 6.535274 AAGCTGAATCAGAAAATTTTGCAC 57.465 33.333 15.38 0.00 32.44 4.57
3038 3294 6.017770 CCAAAGCTGAATCAGAAAATTTTGCA 60.018 34.615 15.38 0.00 32.44 4.08
3039 3295 6.368213 CCAAAGCTGAATCAGAAAATTTTGC 58.632 36.000 15.38 2.89 32.44 3.68
3040 3296 6.368213 GCCAAAGCTGAATCAGAAAATTTTG 58.632 36.000 15.38 13.72 32.44 2.44
3041 3297 6.549912 GCCAAAGCTGAATCAGAAAATTTT 57.450 33.333 15.38 2.28 32.44 1.82
3056 3312 6.113421 CAGCTGAATCTGAAAGCCAAAGCT 62.113 45.833 8.42 0.00 43.45 3.74
3057 3313 2.230750 AGCTGAATCTGAAAGCCAAAGC 59.769 45.455 6.71 0.00 37.68 3.51
3063 3319 1.132643 CAGGCAGCTGAATCTGAAAGC 59.867 52.381 20.43 0.00 36.19 3.51
3064 3320 2.419324 GTCAGGCAGCTGAATCTGAAAG 59.581 50.000 25.62 8.02 37.90 2.62
3065 3321 2.224597 TGTCAGGCAGCTGAATCTGAAA 60.225 45.455 25.62 21.02 37.90 2.69
3071 3327 4.612264 AAAATTTGTCAGGCAGCTGAAT 57.388 36.364 20.43 3.04 34.88 2.57
3088 3344 9.804758 TCCGTAACATGTAAGTTTTTCAAAAAT 57.195 25.926 0.00 0.00 33.07 1.82
3089 3345 9.074443 GTCCGTAACATGTAAGTTTTTCAAAAA 57.926 29.630 0.00 0.00 33.07 1.94
3090 3346 8.242053 TGTCCGTAACATGTAAGTTTTTCAAAA 58.758 29.630 0.00 0.00 31.20 2.44
3091 3347 7.759465 TGTCCGTAACATGTAAGTTTTTCAAA 58.241 30.769 0.00 0.00 31.20 2.69
3092 3348 7.317842 TGTCCGTAACATGTAAGTTTTTCAA 57.682 32.000 0.00 0.00 31.20 2.69
3093 3349 6.922247 TGTCCGTAACATGTAAGTTTTTCA 57.078 33.333 0.00 0.00 31.20 2.69
3094 3350 7.632721 TCTTGTCCGTAACATGTAAGTTTTTC 58.367 34.615 0.00 0.00 37.82 2.29
3095 3351 7.556733 TCTTGTCCGTAACATGTAAGTTTTT 57.443 32.000 0.00 0.00 37.82 1.94
3096 3352 6.293244 GCTCTTGTCCGTAACATGTAAGTTTT 60.293 38.462 0.00 0.00 37.82 2.43
3097 3353 5.178809 GCTCTTGTCCGTAACATGTAAGTTT 59.821 40.000 0.00 0.00 37.82 2.66
3098 3354 4.689345 GCTCTTGTCCGTAACATGTAAGTT 59.311 41.667 0.00 0.00 37.82 2.66
3099 3355 4.243270 GCTCTTGTCCGTAACATGTAAGT 58.757 43.478 0.00 0.00 37.82 2.24
3100 3356 3.303495 CGCTCTTGTCCGTAACATGTAAG 59.697 47.826 0.00 0.00 37.82 2.34
3101 3357 3.057386 TCGCTCTTGTCCGTAACATGTAA 60.057 43.478 0.00 0.00 37.82 2.41
3102 3358 2.488937 TCGCTCTTGTCCGTAACATGTA 59.511 45.455 0.00 0.00 37.82 2.29
3103 3359 1.271379 TCGCTCTTGTCCGTAACATGT 59.729 47.619 0.00 0.00 37.82 3.21
3104 3360 1.990799 TCGCTCTTGTCCGTAACATG 58.009 50.000 0.00 0.00 37.82 3.21
3105 3361 2.736144 TTCGCTCTTGTCCGTAACAT 57.264 45.000 0.00 0.00 37.82 2.71
3126 3382 6.338214 TGGCTTACTATTCAAATGTTTGCA 57.662 33.333 0.66 0.00 38.05 4.08
3127 3383 7.650834 TTTGGCTTACTATTCAAATGTTTGC 57.349 32.000 0.66 0.00 38.05 3.68
3128 3384 8.223100 GCTTTTGGCTTACTATTCAAATGTTTG 58.777 33.333 0.00 0.00 37.46 2.93
3131 3387 6.991938 TGCTTTTGGCTTACTATTCAAATGT 58.008 32.000 0.00 0.00 42.39 2.71
3132 3388 6.035327 GCTGCTTTTGGCTTACTATTCAAATG 59.965 38.462 0.00 0.00 42.39 2.32
3162 3637 4.201841 GCCAATGCACATTCCAAATAAAGC 60.202 41.667 0.00 0.00 37.47 3.51
3178 3653 3.806625 ACTGTCCAAATATGCCAATGC 57.193 42.857 0.00 0.00 38.26 3.56
3179 3654 5.284079 GCTTACTGTCCAAATATGCCAATG 58.716 41.667 0.00 0.00 0.00 2.82
3180 3655 4.342092 GGCTTACTGTCCAAATATGCCAAT 59.658 41.667 0.00 0.00 38.43 3.16
3181 3656 3.699038 GGCTTACTGTCCAAATATGCCAA 59.301 43.478 0.00 0.00 38.43 4.52
3182 3657 3.287222 GGCTTACTGTCCAAATATGCCA 58.713 45.455 0.00 0.00 38.43 4.92
3183 3658 3.287222 TGGCTTACTGTCCAAATATGCC 58.713 45.455 0.00 0.00 38.81 4.40
3184 3659 4.981806 TTGGCTTACTGTCCAAATATGC 57.018 40.909 0.00 0.00 39.22 3.14
3189 3664 3.027412 TGCTTTTGGCTTACTGTCCAAA 58.973 40.909 7.80 7.80 46.98 3.28
3190 3665 2.622942 CTGCTTTTGGCTTACTGTCCAA 59.377 45.455 0.00 0.00 42.39 3.53
3191 3666 2.229792 CTGCTTTTGGCTTACTGTCCA 58.770 47.619 0.00 0.00 42.39 4.02
3192 3667 1.068264 GCTGCTTTTGGCTTACTGTCC 60.068 52.381 0.00 0.00 42.39 4.02
3193 3668 1.608590 TGCTGCTTTTGGCTTACTGTC 59.391 47.619 0.00 0.00 42.39 3.51
3194 3669 1.691196 TGCTGCTTTTGGCTTACTGT 58.309 45.000 0.00 0.00 42.39 3.55
3195 3670 2.991190 CAATGCTGCTTTTGGCTTACTG 59.009 45.455 0.00 0.00 42.39 2.74
3196 3671 2.028748 CCAATGCTGCTTTTGGCTTACT 60.029 45.455 17.66 0.00 42.39 2.24
3197 3672 2.340337 CCAATGCTGCTTTTGGCTTAC 58.660 47.619 17.66 0.00 42.39 2.34
3198 3673 2.747396 CCAATGCTGCTTTTGGCTTA 57.253 45.000 17.66 0.00 42.39 3.09
3199 3674 3.618171 CCAATGCTGCTTTTGGCTT 57.382 47.368 17.66 0.00 42.39 4.35
3209 3684 8.346782 TAATGCACATTCCTAAGCCAATGCTG 62.347 42.308 0.00 0.00 38.87 4.41
3210 3685 6.390006 TAATGCACATTCCTAAGCCAATGCT 61.390 40.000 0.00 0.00 39.83 3.79
3211 3686 1.477700 TGCACATTCCTAAGCCAATGC 59.522 47.619 0.00 0.00 33.92 3.56
3212 3687 4.395959 AATGCACATTCCTAAGCCAATG 57.604 40.909 0.00 0.00 36.28 2.82
3213 3688 4.038402 GCTAATGCACATTCCTAAGCCAAT 59.962 41.667 0.00 0.00 39.41 3.16
3214 3689 3.381272 GCTAATGCACATTCCTAAGCCAA 59.619 43.478 0.00 0.00 39.41 4.52
3215 3690 2.951642 GCTAATGCACATTCCTAAGCCA 59.048 45.455 0.00 0.00 39.41 4.75
3216 3691 3.004106 CAGCTAATGCACATTCCTAAGCC 59.996 47.826 10.69 0.00 42.74 4.35
3217 3692 3.879295 TCAGCTAATGCACATTCCTAAGC 59.121 43.478 0.00 3.68 42.74 3.09
3218 3693 4.025396 CGTCAGCTAATGCACATTCCTAAG 60.025 45.833 0.00 0.00 42.74 2.18
3219 3694 3.871006 CGTCAGCTAATGCACATTCCTAA 59.129 43.478 0.00 0.00 42.74 2.69
3220 3695 3.457234 CGTCAGCTAATGCACATTCCTA 58.543 45.455 0.00 0.00 42.74 2.94
3221 3696 2.283298 CGTCAGCTAATGCACATTCCT 58.717 47.619 0.00 0.00 42.74 3.36
3222 3697 1.268234 GCGTCAGCTAATGCACATTCC 60.268 52.381 0.00 0.00 42.74 3.01
3223 3698 1.398041 TGCGTCAGCTAATGCACATTC 59.602 47.619 0.00 0.00 45.42 2.67
3224 3699 1.452110 TGCGTCAGCTAATGCACATT 58.548 45.000 0.00 0.94 45.42 2.71
3225 3700 1.332686 CATGCGTCAGCTAATGCACAT 59.667 47.619 5.72 0.00 43.55 3.21
3243 3718 8.877864 TGAACCAGAGACCAAATTATTTACAT 57.122 30.769 0.00 0.00 0.00 2.29
3245 3720 9.974980 TTTTGAACCAGAGACCAAATTATTTAC 57.025 29.630 0.00 0.00 0.00 2.01
3246 3721 9.974980 GTTTTGAACCAGAGACCAAATTATTTA 57.025 29.630 0.00 0.00 0.00 1.40
3297 3772 1.691196 CCAAGGAGAGTTGTTGCCAA 58.309 50.000 0.00 0.00 0.00 4.52
3299 3774 0.823356 TGCCAAGGAGAGTTGTTGCC 60.823 55.000 0.00 0.00 0.00 4.52
3300 3775 1.032014 TTGCCAAGGAGAGTTGTTGC 58.968 50.000 0.00 0.00 0.00 4.17
3301 3776 2.291741 GAGTTGCCAAGGAGAGTTGTTG 59.708 50.000 0.00 0.00 0.00 3.33
3303 3778 1.490490 TGAGTTGCCAAGGAGAGTTGT 59.510 47.619 0.00 0.00 0.00 3.32
3304 3779 2.260844 TGAGTTGCCAAGGAGAGTTG 57.739 50.000 0.00 0.00 0.00 3.16
3305 3780 3.073650 AGAATGAGTTGCCAAGGAGAGTT 59.926 43.478 0.00 0.00 0.00 3.01
3306 3781 2.641815 AGAATGAGTTGCCAAGGAGAGT 59.358 45.455 0.00 0.00 0.00 3.24
3307 3782 3.008330 CAGAATGAGTTGCCAAGGAGAG 58.992 50.000 0.00 0.00 39.69 3.20
3308 3783 2.639347 TCAGAATGAGTTGCCAAGGAGA 59.361 45.455 0.00 0.00 42.56 3.71
3309 3784 3.063510 TCAGAATGAGTTGCCAAGGAG 57.936 47.619 0.00 0.00 42.56 3.69
3323 3798 7.984422 TTGTTTGACATCACATAGTCAGAAT 57.016 32.000 0.00 0.00 44.65 2.40
3324 3799 7.800155 TTTGTTTGACATCACATAGTCAGAA 57.200 32.000 0.00 0.00 44.65 3.02
3325 3800 7.714813 TCTTTTGTTTGACATCACATAGTCAGA 59.285 33.333 0.00 0.00 44.65 3.27
3326 3801 7.864686 TCTTTTGTTTGACATCACATAGTCAG 58.135 34.615 0.00 0.00 44.65 3.51
3327 3802 7.800155 TCTTTTGTTTGACATCACATAGTCA 57.200 32.000 0.00 0.00 42.55 3.41
3328 3803 9.515020 TTTTCTTTTGTTTGACATCACATAGTC 57.485 29.630 0.00 0.00 35.37 2.59
3329 3804 9.868277 TTTTTCTTTTGTTTGACATCACATAGT 57.132 25.926 0.00 0.00 0.00 2.12
3359 3834 7.933396 TGTAATGGATAAATGCAGTCAGAATG 58.067 34.615 0.00 0.00 37.54 2.67
3360 3835 8.701908 ATGTAATGGATAAATGCAGTCAGAAT 57.298 30.769 0.00 0.00 0.00 2.40
3361 3836 9.797642 ATATGTAATGGATAAATGCAGTCAGAA 57.202 29.630 0.00 0.00 0.00 3.02
3362 3837 9.797642 AATATGTAATGGATAAATGCAGTCAGA 57.202 29.630 0.00 0.00 0.00 3.27
3364 3839 9.797642 AGAATATGTAATGGATAAATGCAGTCA 57.202 29.630 0.00 0.00 0.00 3.41
3375 3850 9.273137 CCCCTAGTAGAAGAATATGTAATGGAT 57.727 37.037 0.00 0.00 0.00 3.41
3376 3851 7.180408 GCCCCTAGTAGAAGAATATGTAATGGA 59.820 40.741 0.00 0.00 0.00 3.41
3377 3852 7.181125 AGCCCCTAGTAGAAGAATATGTAATGG 59.819 40.741 0.00 0.00 0.00 3.16
3378 3853 8.140112 AGCCCCTAGTAGAAGAATATGTAATG 57.860 38.462 0.00 0.00 0.00 1.90
3379 3854 7.956315 TGAGCCCCTAGTAGAAGAATATGTAAT 59.044 37.037 0.00 0.00 0.00 1.89
3380 3855 7.302948 TGAGCCCCTAGTAGAAGAATATGTAA 58.697 38.462 0.00 0.00 0.00 2.41
3381 3856 6.860034 TGAGCCCCTAGTAGAAGAATATGTA 58.140 40.000 0.00 0.00 0.00 2.29
3382 3857 5.716979 TGAGCCCCTAGTAGAAGAATATGT 58.283 41.667 0.00 0.00 0.00 2.29
3383 3858 6.667414 AGATGAGCCCCTAGTAGAAGAATATG 59.333 42.308 0.00 0.00 0.00 1.78
3384 3859 6.810500 AGATGAGCCCCTAGTAGAAGAATAT 58.189 40.000 0.00 0.00 0.00 1.28
3394 3869 2.393646 GTCTGAAGATGAGCCCCTAGT 58.606 52.381 0.00 0.00 0.00 2.57
3434 3909 9.528018 TTTCAAAACCAACTGAATGAGTATTTC 57.472 29.630 0.00 0.00 33.09 2.17
3466 3941 0.597637 CTAGGCGGCGTCGATGAAAT 60.598 55.000 16.53 0.00 39.00 2.17
3490 3965 5.127194 AGAATAAGGGGAATTTTCCTTTCGC 59.873 40.000 15.43 7.81 46.72 4.70
3491 3966 6.775594 AGAATAAGGGGAATTTTCCTTTCG 57.224 37.500 15.43 0.00 46.72 3.46
3514 3990 2.036217 CTGGTCCTTGAAAAGCATGCAA 59.964 45.455 21.98 3.64 44.44 4.08
3524 4000 2.747686 GCCGGTCTGGTCCTTGAA 59.252 61.111 1.90 0.00 41.21 2.69
3530 4006 4.509737 GTAGCCGCCGGTCTGGTC 62.510 72.222 4.45 0.00 41.21 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.