Multiple sequence alignment - TraesCS1B01G022500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G022500 chr1B 100.000 3432 0 0 1 3432 10089928 10086497 0.000000e+00 6338.0
1 TraesCS1B01G022500 chr1B 87.333 300 27 6 2253 2541 9675041 9675340 1.970000e-87 333.0
2 TraesCS1B01G022500 chr1D 90.512 2403 166 22 162 2534 7907917 7905547 0.000000e+00 3118.0
3 TraesCS1B01G022500 chr1D 80.897 513 56 20 2931 3408 7905547 7905042 1.950000e-97 366.0
4 TraesCS1B01G022500 chr1D 81.429 350 49 14 3045 3381 7201670 7202016 4.360000e-69 272.0
5 TraesCS1B01G022500 chr1A 91.913 2164 138 14 554 2692 9563592 9561441 0.000000e+00 2992.0
6 TraesCS1B01G022500 chr1A 77.538 788 93 31 2694 3432 9559725 9558973 6.900000e-107 398.0
7 TraesCS1B01G022500 chr1A 85.915 355 41 6 1771 2119 9367468 9367117 1.500000e-98 370.0
8 TraesCS1B01G022500 chr1A 84.049 326 41 6 194 511 9563921 9563599 1.550000e-78 303.0
9 TraesCS1B01G022500 chr1A 89.552 67 7 0 3 69 9367708 9367642 6.100000e-13 86.1
10 TraesCS1B01G022500 chr1A 95.652 46 2 0 2494 2539 9367024 9366979 1.320000e-09 75.0
11 TraesCS1B01G022500 chr7A 79.908 1309 197 40 1143 2418 712052032 712050757 0.000000e+00 900.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G022500 chr1B 10086497 10089928 3431 True 6338 6338 100.0000 1 3432 1 chr1B.!!$R1 3431
1 TraesCS1B01G022500 chr1D 7905042 7907917 2875 True 1742 3118 85.7045 162 3408 2 chr1D.!!$R1 3246
2 TraesCS1B01G022500 chr1A 9558973 9563921 4948 True 1231 2992 84.5000 194 3432 3 chr1A.!!$R2 3238
3 TraesCS1B01G022500 chr7A 712050757 712052032 1275 True 900 900 79.9080 1143 2418 1 chr7A.!!$R1 1275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 887 0.106268 TTCAAAGCAGGGCTGGACAA 60.106 50.0 0.0 0.0 39.62 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2824 4632 0.109226 GTCCGTGTAGGTCACTCTGC 60.109 60.0 0.0 0.0 44.16 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.658757 TGGTGCCATGTTTTCTTAAGC 57.341 42.857 0.00 0.00 0.00 3.09
21 22 3.230134 TGGTGCCATGTTTTCTTAAGCT 58.770 40.909 0.00 0.00 0.00 3.74
22 23 4.402829 TGGTGCCATGTTTTCTTAAGCTA 58.597 39.130 0.00 0.00 0.00 3.32
23 24 4.458989 TGGTGCCATGTTTTCTTAAGCTAG 59.541 41.667 0.00 0.00 0.00 3.42
24 25 4.700213 GGTGCCATGTTTTCTTAAGCTAGA 59.300 41.667 0.00 0.00 0.00 2.43
25 26 5.392057 GGTGCCATGTTTTCTTAAGCTAGAC 60.392 44.000 0.00 0.00 0.00 2.59
26 27 4.391830 TGCCATGTTTTCTTAAGCTAGACG 59.608 41.667 0.00 0.00 0.00 4.18
27 28 4.630069 GCCATGTTTTCTTAAGCTAGACGA 59.370 41.667 0.00 0.00 0.00 4.20
28 29 5.446073 GCCATGTTTTCTTAAGCTAGACGAC 60.446 44.000 0.00 0.00 0.00 4.34
29 30 5.063564 CCATGTTTTCTTAAGCTAGACGACC 59.936 44.000 0.00 0.00 0.00 4.79
30 31 5.204409 TGTTTTCTTAAGCTAGACGACCA 57.796 39.130 0.00 0.00 0.00 4.02
31 32 4.986659 TGTTTTCTTAAGCTAGACGACCAC 59.013 41.667 0.00 0.00 0.00 4.16
32 33 5.221382 TGTTTTCTTAAGCTAGACGACCACT 60.221 40.000 0.00 0.00 0.00 4.00
33 34 5.464030 TTTCTTAAGCTAGACGACCACTT 57.536 39.130 0.00 0.00 0.00 3.16
34 35 5.464030 TTCTTAAGCTAGACGACCACTTT 57.536 39.130 0.00 0.00 0.00 2.66
35 36 5.464030 TCTTAAGCTAGACGACCACTTTT 57.536 39.130 0.00 0.00 0.00 2.27
36 37 6.579666 TCTTAAGCTAGACGACCACTTTTA 57.420 37.500 0.00 0.00 0.00 1.52
37 38 6.985117 TCTTAAGCTAGACGACCACTTTTAA 58.015 36.000 0.00 0.00 0.00 1.52
38 39 7.609056 TCTTAAGCTAGACGACCACTTTTAAT 58.391 34.615 0.00 0.00 0.00 1.40
39 40 8.092687 TCTTAAGCTAGACGACCACTTTTAATT 58.907 33.333 0.00 0.00 0.00 1.40
40 41 6.723131 AAGCTAGACGACCACTTTTAATTC 57.277 37.500 0.00 0.00 0.00 2.17
41 42 5.790593 AGCTAGACGACCACTTTTAATTCA 58.209 37.500 0.00 0.00 0.00 2.57
42 43 6.228258 AGCTAGACGACCACTTTTAATTCAA 58.772 36.000 0.00 0.00 0.00 2.69
43 44 6.879458 AGCTAGACGACCACTTTTAATTCAAT 59.121 34.615 0.00 0.00 0.00 2.57
44 45 6.961554 GCTAGACGACCACTTTTAATTCAATG 59.038 38.462 0.00 0.00 0.00 2.82
45 46 6.254281 AGACGACCACTTTTAATTCAATGG 57.746 37.500 0.00 0.00 0.00 3.16
46 47 5.768164 AGACGACCACTTTTAATTCAATGGT 59.232 36.000 0.00 0.00 43.09 3.55
47 48 6.264518 AGACGACCACTTTTAATTCAATGGTT 59.735 34.615 0.00 0.00 40.51 3.67
48 49 6.212955 ACGACCACTTTTAATTCAATGGTTG 58.787 36.000 9.47 9.47 44.16 3.77
49 50 5.633182 CGACCACTTTTAATTCAATGGTTGG 59.367 40.000 5.12 0.00 40.51 3.77
50 51 6.515862 CGACCACTTTTAATTCAATGGTTGGA 60.516 38.462 5.12 0.00 40.51 3.53
51 52 6.758254 ACCACTTTTAATTCAATGGTTGGAG 58.242 36.000 0.00 0.00 37.12 3.86
52 53 5.639082 CCACTTTTAATTCAATGGTTGGAGC 59.361 40.000 0.00 0.00 0.00 4.70
53 54 6.222389 CACTTTTAATTCAATGGTTGGAGCA 58.778 36.000 0.00 0.00 0.00 4.26
54 55 6.875195 CACTTTTAATTCAATGGTTGGAGCAT 59.125 34.615 0.00 0.00 38.04 3.79
55 56 7.388500 CACTTTTAATTCAATGGTTGGAGCATT 59.612 33.333 0.00 0.00 46.06 3.56
56 57 7.938490 ACTTTTAATTCAATGGTTGGAGCATTT 59.062 29.630 2.87 0.00 43.00 2.32
57 58 8.688747 TTTTAATTCAATGGTTGGAGCATTTT 57.311 26.923 2.87 0.00 43.00 1.82
58 59 8.688747 TTTAATTCAATGGTTGGAGCATTTTT 57.311 26.923 2.87 1.77 43.00 1.94
59 60 6.806388 AATTCAATGGTTGGAGCATTTTTC 57.194 33.333 2.87 0.00 43.00 2.29
60 61 5.549742 TTCAATGGTTGGAGCATTTTTCT 57.450 34.783 2.87 0.00 43.00 2.52
61 62 5.549742 TCAATGGTTGGAGCATTTTTCTT 57.450 34.783 2.87 0.00 43.00 2.52
62 63 5.299148 TCAATGGTTGGAGCATTTTTCTTG 58.701 37.500 2.87 0.00 43.00 3.02
63 64 3.749665 TGGTTGGAGCATTTTTCTTGG 57.250 42.857 0.00 0.00 0.00 3.61
64 65 3.303938 TGGTTGGAGCATTTTTCTTGGA 58.696 40.909 0.00 0.00 0.00 3.53
65 66 3.069443 TGGTTGGAGCATTTTTCTTGGAC 59.931 43.478 0.00 0.00 0.00 4.02
66 67 3.554960 GGTTGGAGCATTTTTCTTGGACC 60.555 47.826 0.00 0.00 0.00 4.46
67 68 2.956132 TGGAGCATTTTTCTTGGACCA 58.044 42.857 0.00 0.00 0.00 4.02
68 69 2.627699 TGGAGCATTTTTCTTGGACCAC 59.372 45.455 0.00 0.00 0.00 4.16
69 70 2.893489 GGAGCATTTTTCTTGGACCACT 59.107 45.455 0.00 0.00 0.00 4.00
70 71 3.321968 GGAGCATTTTTCTTGGACCACTT 59.678 43.478 0.00 0.00 0.00 3.16
71 72 4.202253 GGAGCATTTTTCTTGGACCACTTT 60.202 41.667 0.00 0.00 0.00 2.66
72 73 5.357742 AGCATTTTTCTTGGACCACTTTT 57.642 34.783 0.00 0.00 0.00 2.27
73 74 6.462347 GGAGCATTTTTCTTGGACCACTTTTA 60.462 38.462 0.00 0.00 0.00 1.52
74 75 6.883744 AGCATTTTTCTTGGACCACTTTTAA 58.116 32.000 0.00 0.00 0.00 1.52
75 76 7.508687 AGCATTTTTCTTGGACCACTTTTAAT 58.491 30.769 0.00 0.00 0.00 1.40
76 77 7.992608 AGCATTTTTCTTGGACCACTTTTAATT 59.007 29.630 0.00 0.00 0.00 1.40
77 78 8.282592 GCATTTTTCTTGGACCACTTTTAATTC 58.717 33.333 0.00 0.00 0.00 2.17
78 79 9.323985 CATTTTTCTTGGACCACTTTTAATTCA 57.676 29.630 0.00 0.00 0.00 2.57
79 80 9.898152 ATTTTTCTTGGACCACTTTTAATTCAA 57.102 25.926 0.00 0.00 0.00 2.69
80 81 9.898152 TTTTTCTTGGACCACTTTTAATTCAAT 57.102 25.926 0.00 0.00 0.00 2.57
81 82 8.885494 TTTCTTGGACCACTTTTAATTCAATG 57.115 30.769 0.00 0.00 0.00 2.82
82 83 6.454795 TCTTGGACCACTTTTAATTCAATGC 58.545 36.000 0.00 0.00 0.00 3.56
83 84 6.267471 TCTTGGACCACTTTTAATTCAATGCT 59.733 34.615 0.00 0.00 0.00 3.79
84 85 7.450014 TCTTGGACCACTTTTAATTCAATGCTA 59.550 33.333 0.00 0.00 0.00 3.49
85 86 7.716799 TGGACCACTTTTAATTCAATGCTAT 57.283 32.000 0.00 0.00 0.00 2.97
86 87 7.771183 TGGACCACTTTTAATTCAATGCTATC 58.229 34.615 0.00 0.00 0.00 2.08
87 88 7.147915 TGGACCACTTTTAATTCAATGCTATCC 60.148 37.037 0.00 0.00 0.00 2.59
88 89 6.795399 ACCACTTTTAATTCAATGCTATCCG 58.205 36.000 0.00 0.00 0.00 4.18
89 90 6.601613 ACCACTTTTAATTCAATGCTATCCGA 59.398 34.615 0.00 0.00 0.00 4.55
90 91 7.285401 ACCACTTTTAATTCAATGCTATCCGAT 59.715 33.333 0.00 0.00 0.00 4.18
91 92 8.137437 CCACTTTTAATTCAATGCTATCCGATT 58.863 33.333 0.00 0.00 0.00 3.34
92 93 9.173939 CACTTTTAATTCAATGCTATCCGATTC 57.826 33.333 0.00 0.00 0.00 2.52
93 94 9.125026 ACTTTTAATTCAATGCTATCCGATTCT 57.875 29.630 0.00 0.00 0.00 2.40
94 95 9.604626 CTTTTAATTCAATGCTATCCGATTCTC 57.395 33.333 0.00 0.00 0.00 2.87
95 96 8.908786 TTTAATTCAATGCTATCCGATTCTCT 57.091 30.769 0.00 0.00 0.00 3.10
96 97 8.539770 TTAATTCAATGCTATCCGATTCTCTC 57.460 34.615 0.00 0.00 0.00 3.20
97 98 5.798125 TTCAATGCTATCCGATTCTCTCT 57.202 39.130 0.00 0.00 0.00 3.10
98 99 5.798125 TCAATGCTATCCGATTCTCTCTT 57.202 39.130 0.00 0.00 0.00 2.85
99 100 6.901081 TCAATGCTATCCGATTCTCTCTTA 57.099 37.500 0.00 0.00 0.00 2.10
100 101 7.290110 TCAATGCTATCCGATTCTCTCTTAA 57.710 36.000 0.00 0.00 0.00 1.85
101 102 7.148641 TCAATGCTATCCGATTCTCTCTTAAC 58.851 38.462 0.00 0.00 0.00 2.01
102 103 6.909550 ATGCTATCCGATTCTCTCTTAACT 57.090 37.500 0.00 0.00 0.00 2.24
103 104 6.320494 TGCTATCCGATTCTCTCTTAACTC 57.680 41.667 0.00 0.00 0.00 3.01
104 105 5.049336 TGCTATCCGATTCTCTCTTAACTCG 60.049 44.000 0.00 0.00 0.00 4.18
105 106 3.694535 TCCGATTCTCTCTTAACTCGC 57.305 47.619 0.00 0.00 0.00 5.03
106 107 3.014623 TCCGATTCTCTCTTAACTCGCA 58.985 45.455 0.00 0.00 0.00 5.10
107 108 3.632604 TCCGATTCTCTCTTAACTCGCAT 59.367 43.478 0.00 0.00 0.00 4.73
108 109 4.098044 TCCGATTCTCTCTTAACTCGCATT 59.902 41.667 0.00 0.00 0.00 3.56
109 110 4.806247 CCGATTCTCTCTTAACTCGCATTT 59.194 41.667 0.00 0.00 0.00 2.32
110 111 5.292101 CCGATTCTCTCTTAACTCGCATTTT 59.708 40.000 0.00 0.00 0.00 1.82
111 112 6.183360 CCGATTCTCTCTTAACTCGCATTTTT 60.183 38.462 0.00 0.00 0.00 1.94
112 113 6.897138 CGATTCTCTCTTAACTCGCATTTTTC 59.103 38.462 0.00 0.00 0.00 2.29
113 114 7.201478 CGATTCTCTCTTAACTCGCATTTTTCT 60.201 37.037 0.00 0.00 0.00 2.52
114 115 9.088512 GATTCTCTCTTAACTCGCATTTTTCTA 57.911 33.333 0.00 0.00 0.00 2.10
115 116 8.467402 TTCTCTCTTAACTCGCATTTTTCTAG 57.533 34.615 0.00 0.00 0.00 2.43
116 117 6.531948 TCTCTCTTAACTCGCATTTTTCTAGC 59.468 38.462 0.00 0.00 0.00 3.42
117 118 6.163476 TCTCTTAACTCGCATTTTTCTAGCA 58.837 36.000 0.00 0.00 0.00 3.49
118 119 6.818644 TCTCTTAACTCGCATTTTTCTAGCAT 59.181 34.615 0.00 0.00 0.00 3.79
119 120 7.979537 TCTCTTAACTCGCATTTTTCTAGCATA 59.020 33.333 0.00 0.00 0.00 3.14
120 121 8.487313 TCTTAACTCGCATTTTTCTAGCATAA 57.513 30.769 0.00 0.00 0.00 1.90
121 122 8.604035 TCTTAACTCGCATTTTTCTAGCATAAG 58.396 33.333 0.00 0.00 0.00 1.73
122 123 5.741388 ACTCGCATTTTTCTAGCATAAGG 57.259 39.130 0.00 0.00 0.00 2.69
123 124 5.186198 ACTCGCATTTTTCTAGCATAAGGT 58.814 37.500 0.00 0.00 0.00 3.50
124 125 5.065218 ACTCGCATTTTTCTAGCATAAGGTG 59.935 40.000 0.00 0.00 0.00 4.00
125 126 4.335315 TCGCATTTTTCTAGCATAAGGTGG 59.665 41.667 0.00 0.00 0.00 4.61
126 127 4.335315 CGCATTTTTCTAGCATAAGGTGGA 59.665 41.667 0.00 0.00 0.00 4.02
127 128 5.582550 GCATTTTTCTAGCATAAGGTGGAC 58.417 41.667 0.00 0.00 32.21 4.02
128 129 5.125417 GCATTTTTCTAGCATAAGGTGGACA 59.875 40.000 0.00 0.00 32.21 4.02
129 130 6.183360 GCATTTTTCTAGCATAAGGTGGACAT 60.183 38.462 0.00 0.00 32.21 3.06
130 131 7.631377 GCATTTTTCTAGCATAAGGTGGACATT 60.631 37.037 0.00 0.00 32.21 2.71
131 132 7.775053 TTTTTCTAGCATAAGGTGGACATTT 57.225 32.000 0.00 0.00 32.21 2.32
132 133 7.775053 TTTTCTAGCATAAGGTGGACATTTT 57.225 32.000 0.00 0.00 32.21 1.82
133 134 7.391148 TTTCTAGCATAAGGTGGACATTTTC 57.609 36.000 0.00 0.00 32.21 2.29
134 135 5.116180 TCTAGCATAAGGTGGACATTTTCG 58.884 41.667 0.00 0.00 0.00 3.46
135 136 3.686016 AGCATAAGGTGGACATTTTCGT 58.314 40.909 0.00 0.00 0.00 3.85
136 137 4.079253 AGCATAAGGTGGACATTTTCGTT 58.921 39.130 0.00 0.00 0.00 3.85
137 138 4.082787 AGCATAAGGTGGACATTTTCGTTG 60.083 41.667 0.00 0.00 0.00 4.10
138 139 4.083003 GCATAAGGTGGACATTTTCGTTGA 60.083 41.667 0.00 0.00 0.00 3.18
139 140 5.563867 GCATAAGGTGGACATTTTCGTTGAA 60.564 40.000 0.00 0.00 0.00 2.69
140 141 4.993029 AAGGTGGACATTTTCGTTGAAA 57.007 36.364 0.00 0.00 0.00 2.69
141 142 4.301637 AGGTGGACATTTTCGTTGAAAC 57.698 40.909 0.00 0.00 30.83 2.78
142 143 3.951680 AGGTGGACATTTTCGTTGAAACT 59.048 39.130 0.00 0.00 30.83 2.66
143 144 4.041723 GGTGGACATTTTCGTTGAAACTG 58.958 43.478 7.74 7.74 37.91 3.16
144 145 4.201970 GGTGGACATTTTCGTTGAAACTGA 60.202 41.667 14.14 0.00 36.28 3.41
145 146 5.507315 GGTGGACATTTTCGTTGAAACTGAT 60.507 40.000 14.14 2.17 36.28 2.90
146 147 5.399301 GTGGACATTTTCGTTGAAACTGATG 59.601 40.000 14.14 8.19 36.28 3.07
147 148 5.298026 TGGACATTTTCGTTGAAACTGATGA 59.702 36.000 14.14 0.00 36.28 2.92
148 149 6.183360 TGGACATTTTCGTTGAAACTGATGAA 60.183 34.615 14.14 0.00 36.28 2.57
149 150 6.142320 GGACATTTTCGTTGAAACTGATGAAC 59.858 38.462 14.14 6.37 36.28 3.18
150 151 6.559810 ACATTTTCGTTGAAACTGATGAACA 58.440 32.000 14.14 0.00 36.28 3.18
151 152 7.202526 ACATTTTCGTTGAAACTGATGAACAT 58.797 30.769 14.14 0.00 36.28 2.71
152 153 7.706179 ACATTTTCGTTGAAACTGATGAACATT 59.294 29.630 14.14 0.00 36.28 2.71
153 154 8.542132 CATTTTCGTTGAAACTGATGAACATTT 58.458 29.630 4.23 0.00 35.26 2.32
154 155 8.472683 TTTTCGTTGAAACTGATGAACATTTT 57.527 26.923 0.00 0.00 34.81 1.82
155 156 9.574458 TTTTCGTTGAAACTGATGAACATTTTA 57.426 25.926 0.00 0.00 32.83 1.52
156 157 9.743057 TTTCGTTGAAACTGATGAACATTTTAT 57.257 25.926 0.00 0.00 32.83 1.40
157 158 8.726650 TCGTTGAAACTGATGAACATTTTATG 57.273 30.769 0.00 0.00 32.83 1.90
209 218 8.854614 ACAACTTCATAACTCTTATTGCTCTT 57.145 30.769 0.00 0.00 0.00 2.85
252 261 1.529244 GTGCAGGCTTGGTGAACCT 60.529 57.895 0.00 0.00 36.82 3.50
273 285 4.718961 CTGGAAGGATGGGGTAATACTTG 58.281 47.826 0.00 0.00 30.47 3.16
293 305 1.272147 GGGAGCTTCAATTCCAGTGGT 60.272 52.381 9.54 0.00 35.09 4.16
303 315 1.208706 TTCCAGTGGTGTTGTCTCCA 58.791 50.000 9.54 0.00 35.24 3.86
306 318 1.270518 CCAGTGGTGTTGTCTCCAGAG 60.271 57.143 0.00 0.00 37.81 3.35
324 336 5.132648 TCCAGAGATAAGCCCATGTTAATGT 59.867 40.000 0.00 0.00 31.27 2.71
368 385 7.573968 TTGAAGATCTTCGATCTATGACTGA 57.426 36.000 26.32 5.27 42.28 3.41
379 396 5.068855 CGATCTATGACTGATATGGCCATCT 59.931 44.000 24.80 13.60 0.00 2.90
406 423 2.163815 CACTAGTAGCGCTTACTGTGGT 59.836 50.000 18.68 13.69 42.57 4.16
414 431 3.056107 AGCGCTTACTGTGGTCATTAAGA 60.056 43.478 2.64 0.00 38.34 2.10
426 443 4.161565 TGGTCATTAAGACTTGACGCCTAT 59.838 41.667 0.00 0.00 46.72 2.57
432 449 3.166489 AGACTTGACGCCTATAGTTGC 57.834 47.619 0.00 0.00 0.00 4.17
433 450 2.159085 AGACTTGACGCCTATAGTTGCC 60.159 50.000 0.00 0.00 0.00 4.52
438 455 0.317479 ACGCCTATAGTTGCCGATCC 59.683 55.000 0.00 0.00 0.00 3.36
440 457 1.000955 CGCCTATAGTTGCCGATCCTT 59.999 52.381 0.00 0.00 0.00 3.36
441 458 2.230508 CGCCTATAGTTGCCGATCCTTA 59.769 50.000 0.00 0.00 0.00 2.69
442 459 3.119101 CGCCTATAGTTGCCGATCCTTAT 60.119 47.826 0.00 0.00 0.00 1.73
443 460 4.620803 CGCCTATAGTTGCCGATCCTTATT 60.621 45.833 0.00 0.00 0.00 1.40
446 463 2.348411 AGTTGCCGATCCTTATTGGG 57.652 50.000 0.00 0.00 37.16 4.12
448 465 0.467290 TTGCCGATCCTTATTGGGCC 60.467 55.000 0.00 0.00 43.09 5.80
449 466 1.966451 GCCGATCCTTATTGGGCCG 60.966 63.158 0.00 0.00 37.16 6.13
450 467 1.302511 CCGATCCTTATTGGGCCGG 60.303 63.158 0.00 0.00 41.71 6.13
452 469 1.456287 GATCCTTATTGGGCCGGCT 59.544 57.895 28.56 9.11 36.20 5.52
453 470 0.606673 GATCCTTATTGGGCCGGCTC 60.607 60.000 28.56 25.91 36.20 4.70
458 475 2.154462 CTTATTGGGCCGGCTCATAAG 58.846 52.381 33.55 30.16 0.00 1.73
496 513 8.788806 TCCATCACAATTGTAATAACGAAAAGT 58.211 29.630 11.53 0.00 0.00 2.66
497 514 9.405587 CCATCACAATTGTAATAACGAAAAGTT 57.594 29.630 11.53 0.00 46.36 2.66
501 518 5.985526 ATTGTAATAACGAAAAGTTGCGC 57.014 34.783 0.00 0.00 44.01 6.09
505 522 1.732528 TAACGAAAAGTTGCGCGTTG 58.267 45.000 8.43 0.00 45.26 4.10
512 529 0.450184 AAGTTGCGCGTTGAAGTTGT 59.550 45.000 8.43 0.00 0.00 3.32
513 530 0.248054 AGTTGCGCGTTGAAGTTGTG 60.248 50.000 8.43 0.00 0.00 3.33
527 546 4.036262 TGAAGTTGTGTGCACCTTATTCAC 59.964 41.667 15.69 4.28 0.00 3.18
529 548 4.144297 AGTTGTGTGCACCTTATTCACAT 58.856 39.130 15.69 0.00 41.91 3.21
542 561 7.277760 CACCTTATTCACATCTTCGTTCATACA 59.722 37.037 0.00 0.00 0.00 2.29
543 562 7.987458 ACCTTATTCACATCTTCGTTCATACAT 59.013 33.333 0.00 0.00 0.00 2.29
544 563 8.278408 CCTTATTCACATCTTCGTTCATACATG 58.722 37.037 0.00 0.00 0.00 3.21
545 564 8.940768 TTATTCACATCTTCGTTCATACATGA 57.059 30.769 0.00 0.00 34.44 3.07
546 565 9.546428 TTATTCACATCTTCGTTCATACATGAT 57.454 29.630 0.00 0.00 36.56 2.45
547 566 6.833342 TCACATCTTCGTTCATACATGATG 57.167 37.500 0.00 0.00 36.56 3.07
548 567 6.572519 TCACATCTTCGTTCATACATGATGA 58.427 36.000 0.00 1.53 43.11 2.92
549 568 7.212274 TCACATCTTCGTTCATACATGATGAT 58.788 34.615 0.00 0.00 44.23 2.45
552 571 9.546428 ACATCTTCGTTCATACATGATGATAAA 57.454 29.630 0.00 0.00 44.23 1.40
578 597 4.371855 TGACTGCTAACTAGGATGAACG 57.628 45.455 0.00 0.00 0.00 3.95
600 619 9.974750 GAACGAGAAAATTCCTAAGATTACAAG 57.025 33.333 0.00 0.00 0.00 3.16
602 621 9.152595 ACGAGAAAATTCCTAAGATTACAAGTC 57.847 33.333 0.00 0.00 0.00 3.01
749 769 8.742125 ATAAGAACATACTATCCATCCTTCCA 57.258 34.615 0.00 0.00 0.00 3.53
750 770 6.678568 AGAACATACTATCCATCCTTCCAG 57.321 41.667 0.00 0.00 0.00 3.86
751 771 4.899352 ACATACTATCCATCCTTCCAGC 57.101 45.455 0.00 0.00 0.00 4.85
752 772 4.497516 ACATACTATCCATCCTTCCAGCT 58.502 43.478 0.00 0.00 0.00 4.24
753 773 4.530161 ACATACTATCCATCCTTCCAGCTC 59.470 45.833 0.00 0.00 0.00 4.09
754 774 2.334023 ACTATCCATCCTTCCAGCTCC 58.666 52.381 0.00 0.00 0.00 4.70
755 775 2.333069 CTATCCATCCTTCCAGCTCCA 58.667 52.381 0.00 0.00 0.00 3.86
764 784 1.426251 TTCCAGCTCCAGGAAAGGCA 61.426 55.000 1.60 0.00 41.94 4.75
793 813 1.366319 AGATGATGGATGTAGCCCCC 58.634 55.000 0.00 0.00 0.00 5.40
866 887 0.106268 TTCAAAGCAGGGCTGGACAA 60.106 50.000 0.00 0.00 39.62 3.18
914 935 3.876198 GGCGTGGCATTAGCACCG 61.876 66.667 13.04 1.49 44.61 4.94
916 937 3.876198 CGTGGCATTAGCACCGCC 61.876 66.667 0.00 0.00 46.43 6.13
917 938 3.518068 GTGGCATTAGCACCGCCC 61.518 66.667 0.00 0.00 45.63 6.13
921 942 3.272334 CATTAGCACCGCCCGCTC 61.272 66.667 0.00 0.00 40.96 5.03
922 943 3.470888 ATTAGCACCGCCCGCTCT 61.471 61.111 0.00 0.00 40.96 4.09
925 946 3.709348 TAGCACCGCCCGCTCTCTA 62.709 63.158 0.00 0.00 40.96 2.43
951 972 1.567357 ACTTCTCAGCTCCTCCTTCC 58.433 55.000 0.00 0.00 0.00 3.46
957 978 1.048160 CAGCTCCTCCTTCCCCTCTC 61.048 65.000 0.00 0.00 0.00 3.20
959 980 0.618968 GCTCCTCCTTCCCCTCTCAA 60.619 60.000 0.00 0.00 0.00 3.02
992 1013 5.554034 ACTACCCACCTATAGCCATAGAT 57.446 43.478 0.18 0.00 36.96 1.98
996 1021 4.265492 ACCCACCTATAGCCATAGATCCAT 60.265 45.833 0.18 0.00 36.96 3.41
1024 1049 2.425312 CGTGCTAGAGATGTTCCAGTCT 59.575 50.000 0.00 0.00 0.00 3.24
1035 1060 4.453480 TGTTCCAGTCTCCTCCATTTTT 57.547 40.909 0.00 0.00 0.00 1.94
1047 1072 6.012157 TCTCCTCCATTTTTCTCATCCTCTTT 60.012 38.462 0.00 0.00 0.00 2.52
1049 1074 5.713861 CCTCCATTTTTCTCATCCTCTTTGT 59.286 40.000 0.00 0.00 0.00 2.83
1057 1082 2.235650 CTCATCCTCTTTGTGCTCTCCA 59.764 50.000 0.00 0.00 0.00 3.86
1088 1113 4.796495 GGCGCCATTCTTCCGGGT 62.796 66.667 24.80 0.00 0.00 5.28
1092 1117 1.078708 GCCATTCTTCCGGGTTCGA 60.079 57.895 0.00 0.00 39.00 3.71
1095 1120 0.389426 CATTCTTCCGGGTTCGACGT 60.389 55.000 0.00 0.00 39.00 4.34
1110 1135 2.548480 TCGACGTCTGATTAGCGATGAT 59.452 45.455 14.70 0.00 0.00 2.45
1195 1220 3.976701 AAATGGGTGAGGAGCCGCG 62.977 63.158 0.00 0.00 43.35 6.46
1210 1235 2.280119 GCGCCACGGATGCTATGA 60.280 61.111 0.00 0.00 0.00 2.15
1216 1241 2.547855 GCCACGGATGCTATGACATACA 60.548 50.000 0.00 0.00 29.44 2.29
1278 1303 2.094675 CAAAATGGGCGGAATGACTCT 58.905 47.619 0.00 0.00 0.00 3.24
1337 1362 2.416260 CCGCCTCCCTAAGTACGC 59.584 66.667 0.00 0.00 0.00 4.42
1347 1372 1.469767 CCTAAGTACGCCGGTAACCAC 60.470 57.143 1.90 0.00 0.00 4.16
1369 1395 7.387948 ACCACTGTTGTTGACATCTCTAATTAC 59.612 37.037 0.00 0.00 37.69 1.89
1380 1406 9.778741 TGACATCTCTAATTACAGAACAAAAGT 57.221 29.630 0.00 0.00 0.00 2.66
1541 1567 3.991999 ATGTTGTGCATGCTCGCT 58.008 50.000 20.33 0.00 36.26 4.93
1664 1690 2.703798 GGAGTACTACCGCGCACCA 61.704 63.158 8.75 0.00 0.00 4.17
1850 1888 7.755373 TCGTATGTAATTAGCTAGCTATTGCAG 59.245 37.037 24.69 16.11 42.74 4.41
2101 2152 3.249189 TGGGACACAGGTGGCTCC 61.249 66.667 2.03 4.40 38.69 4.70
2135 2186 2.069273 GGGATCCGCTAACGATGATTG 58.931 52.381 5.45 0.00 43.93 2.67
2271 2322 1.066430 GTACATGACGGGCTTGAGGAA 60.066 52.381 0.00 0.00 0.00 3.36
2467 2519 0.032403 ATGTGGTTGTGTGTGCATGC 59.968 50.000 11.82 11.82 0.00 4.06
2474 2526 2.281140 TGTGTGTGCATGCATATTGC 57.719 45.000 25.64 14.96 45.29 3.56
2602 2660 9.998106 CTATATAATTATACACATACCAGGCCC 57.002 37.037 7.34 0.00 0.00 5.80
2603 2661 6.712114 ATAATTATACACATACCAGGCCCA 57.288 37.500 0.00 0.00 0.00 5.36
2604 2662 5.599048 AATTATACACATACCAGGCCCAT 57.401 39.130 0.00 0.00 0.00 4.00
2605 2663 4.634012 TTATACACATACCAGGCCCATC 57.366 45.455 0.00 0.00 0.00 3.51
2607 2665 0.998928 ACACATACCAGGCCCATCAA 59.001 50.000 0.00 0.00 0.00 2.57
2608 2666 1.064463 ACACATACCAGGCCCATCAAG 60.064 52.381 0.00 0.00 0.00 3.02
2609 2667 1.212688 CACATACCAGGCCCATCAAGA 59.787 52.381 0.00 0.00 0.00 3.02
2610 2668 2.138542 ACATACCAGGCCCATCAAGAT 58.861 47.619 0.00 0.00 0.00 2.40
2611 2669 2.515429 ACATACCAGGCCCATCAAGATT 59.485 45.455 0.00 0.00 0.00 2.40
2613 2671 4.167892 ACATACCAGGCCCATCAAGATTAA 59.832 41.667 0.00 0.00 0.00 1.40
2622 2689 5.452356 GGCCCATCAAGATTAATGGAGTTTG 60.452 44.000 2.98 0.00 44.37 2.93
2628 2695 8.689061 CATCAAGATTAATGGAGTTTGATTGGA 58.311 33.333 0.00 0.00 34.15 3.53
2643 2710 7.335422 AGTTTGATTGGATGATGAGTACTGAAC 59.665 37.037 0.00 0.00 0.00 3.18
2646 2713 6.820152 TGATTGGATGATGAGTACTGAACTTG 59.180 38.462 0.00 0.00 39.07 3.16
2655 2722 4.836175 TGAGTACTGAACTTGGTGACCATA 59.164 41.667 4.56 0.00 39.07 2.74
2659 2726 5.964958 ACTGAACTTGGTGACCATATTTG 57.035 39.130 4.56 3.42 31.53 2.32
2668 2735 5.821097 TGGTGACCATATTTGTGTTGGATA 58.179 37.500 0.00 0.00 34.52 2.59
2669 2736 5.885352 TGGTGACCATATTTGTGTTGGATAG 59.115 40.000 0.00 0.00 34.52 2.08
2680 2747 6.854496 TTGTGTTGGATAGTGTGTAAAGAC 57.146 37.500 0.00 0.00 0.00 3.01
2692 2759 9.733556 ATAGTGTGTAAAGACAATATCCAACAA 57.266 29.630 0.00 0.00 33.00 2.83
2702 4483 9.699410 AAGACAATATCCAACAATTCCTATCAA 57.301 29.630 0.00 0.00 0.00 2.57
2716 4497 9.918630 CAATTCCTATCAAAATTCAACAAGTCT 57.081 29.630 0.00 0.00 0.00 3.24
2717 4498 9.918630 AATTCCTATCAAAATTCAACAAGTCTG 57.081 29.630 0.00 0.00 0.00 3.51
2745 4527 1.093159 GATGTACACTCGTCCTCCGT 58.907 55.000 0.00 0.00 37.94 4.69
2754 4536 1.525619 CTCGTCCTCCGTTGTTCAAAC 59.474 52.381 0.00 0.00 37.94 2.93
2779 4570 9.911788 ACAAGTTTGATCATGATAACCTCTTAT 57.088 29.630 8.54 0.00 0.00 1.73
2795 4586 7.741554 ACCTCTTATACAAAGAAGATGGACT 57.258 36.000 0.00 0.00 32.70 3.85
2796 4587 7.560368 ACCTCTTATACAAAGAAGATGGACTG 58.440 38.462 0.00 0.00 32.70 3.51
2797 4588 6.481644 CCTCTTATACAAAGAAGATGGACTGC 59.518 42.308 0.00 0.00 32.70 4.40
2801 4609 4.090761 ACAAAGAAGATGGACTGCAGAA 57.909 40.909 23.35 5.79 0.00 3.02
2809 4617 8.121305 AGAAGATGGACTGCAGAAGTATATAG 57.879 38.462 23.35 0.00 40.07 1.31
2813 4621 4.649218 TGGACTGCAGAAGTATATAGCACA 59.351 41.667 23.35 0.00 40.07 4.57
2820 4628 6.041979 TGCAGAAGTATATAGCACAGGAATCA 59.958 38.462 0.00 0.00 0.00 2.57
2823 4631 5.746990 AGTATATAGCACAGGAATCACCC 57.253 43.478 0.00 0.00 40.05 4.61
2824 4632 3.685139 ATATAGCACAGGAATCACCCG 57.315 47.619 0.00 0.00 40.05 5.28
2828 4636 1.296392 CACAGGAATCACCCGCAGA 59.704 57.895 0.00 0.00 40.05 4.26
2839 4647 3.679517 CACCCGCAGAGTGACCTACAC 62.680 61.905 0.00 0.00 39.11 2.90
2879 4687 2.255881 GCTGCGTGTACCGGGTTTT 61.256 57.895 4.31 0.00 36.94 2.43
2881 4689 1.893168 CTGCGTGTACCGGGTTTTCG 61.893 60.000 4.31 8.96 36.94 3.46
2892 4700 1.921230 CGGGTTTTCGGTTTGTGTTTG 59.079 47.619 0.00 0.00 0.00 2.93
2893 4701 2.671632 CGGGTTTTCGGTTTGTGTTTGT 60.672 45.455 0.00 0.00 0.00 2.83
2906 4714 7.292292 GGTTTGTGTTTGTCTTTTTGGTTTAC 58.708 34.615 0.00 0.00 0.00 2.01
2908 4716 5.480205 TGTGTTTGTCTTTTTGGTTTACCC 58.520 37.500 0.00 0.00 34.29 3.69
2913 4721 5.331876 TGTCTTTTTGGTTTACCCTGTTG 57.668 39.130 0.00 0.00 34.29 3.33
2928 4736 4.073549 CCCTGTTGGTATTTTCGGTGTTA 58.926 43.478 0.00 0.00 0.00 2.41
2942 4750 8.842358 TTTTCGGTGTTATCTTCTTACATTCT 57.158 30.769 0.00 0.00 0.00 2.40
2944 4752 8.842358 TTCGGTGTTATCTTCTTACATTCTTT 57.158 30.769 0.00 0.00 0.00 2.52
2970 4778 7.316544 GGTTTTCCCTTTCCTTTTTCTTTTC 57.683 36.000 0.00 0.00 0.00 2.29
3005 4813 6.554605 TCCTCTTTTCTTCCATGTTCCATTTT 59.445 34.615 0.00 0.00 0.00 1.82
3006 4814 6.870439 CCTCTTTTCTTCCATGTTCCATTTTC 59.130 38.462 0.00 0.00 0.00 2.29
3018 4835 5.591099 TGTTCCATTTTCTTTCTCTTGTGC 58.409 37.500 0.00 0.00 0.00 4.57
3029 4846 8.856490 TTCTTTCTCTTGTGCAAAAGAAATAC 57.144 30.769 19.78 0.00 41.97 1.89
3054 4872 8.400947 ACACACATTTATAGAGAAATGCATGAC 58.599 33.333 0.00 0.00 46.39 3.06
3400 5241 6.654793 TTTTCAAAACAATTCCACGAAAGG 57.345 33.333 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.230134 AGCTTAAGAAAACATGGCACCA 58.770 40.909 6.67 0.00 0.00 4.17
1 2 3.942130 AGCTTAAGAAAACATGGCACC 57.058 42.857 6.67 0.00 0.00 5.01
3 4 4.391830 CGTCTAGCTTAAGAAAACATGGCA 59.608 41.667 6.67 0.00 0.00 4.92
4 5 4.630069 TCGTCTAGCTTAAGAAAACATGGC 59.370 41.667 6.67 0.00 0.00 4.40
5 6 5.063564 GGTCGTCTAGCTTAAGAAAACATGG 59.936 44.000 6.67 0.00 0.00 3.66
6 7 5.637810 TGGTCGTCTAGCTTAAGAAAACATG 59.362 40.000 6.67 0.00 0.00 3.21
7 8 5.638234 GTGGTCGTCTAGCTTAAGAAAACAT 59.362 40.000 6.67 0.00 0.00 2.71
8 9 4.986659 GTGGTCGTCTAGCTTAAGAAAACA 59.013 41.667 6.67 0.00 0.00 2.83
9 10 5.228665 AGTGGTCGTCTAGCTTAAGAAAAC 58.771 41.667 6.67 0.00 0.00 2.43
10 11 5.464030 AGTGGTCGTCTAGCTTAAGAAAA 57.536 39.130 6.67 0.00 0.00 2.29
11 12 5.464030 AAGTGGTCGTCTAGCTTAAGAAA 57.536 39.130 6.67 0.00 0.00 2.52
12 13 5.464030 AAAGTGGTCGTCTAGCTTAAGAA 57.536 39.130 6.67 0.00 0.00 2.52
13 14 5.464030 AAAAGTGGTCGTCTAGCTTAAGA 57.536 39.130 6.67 0.00 0.00 2.10
14 15 7.829378 ATTAAAAGTGGTCGTCTAGCTTAAG 57.171 36.000 0.00 0.00 0.00 1.85
15 16 7.874016 TGAATTAAAAGTGGTCGTCTAGCTTAA 59.126 33.333 0.00 0.00 0.00 1.85
16 17 7.380536 TGAATTAAAAGTGGTCGTCTAGCTTA 58.619 34.615 0.00 0.00 0.00 3.09
17 18 6.228258 TGAATTAAAAGTGGTCGTCTAGCTT 58.772 36.000 0.00 0.00 0.00 3.74
18 19 5.790593 TGAATTAAAAGTGGTCGTCTAGCT 58.209 37.500 0.00 0.00 0.00 3.32
19 20 6.476243 TTGAATTAAAAGTGGTCGTCTAGC 57.524 37.500 0.00 0.00 0.00 3.42
20 21 7.119262 ACCATTGAATTAAAAGTGGTCGTCTAG 59.881 37.037 0.00 0.00 35.12 2.43
21 22 6.938030 ACCATTGAATTAAAAGTGGTCGTCTA 59.062 34.615 0.00 0.00 35.12 2.59
22 23 5.768164 ACCATTGAATTAAAAGTGGTCGTCT 59.232 36.000 0.00 0.00 35.12 4.18
23 24 6.009115 ACCATTGAATTAAAAGTGGTCGTC 57.991 37.500 0.00 0.00 35.12 4.20
24 25 6.212955 CAACCATTGAATTAAAAGTGGTCGT 58.787 36.000 1.89 0.00 38.91 4.34
25 26 5.633182 CCAACCATTGAATTAAAAGTGGTCG 59.367 40.000 1.89 0.00 38.91 4.79
26 27 6.754193 TCCAACCATTGAATTAAAAGTGGTC 58.246 36.000 1.89 0.00 38.91 4.02
27 28 6.739331 TCCAACCATTGAATTAAAAGTGGT 57.261 33.333 0.00 0.00 41.42 4.16
28 29 5.639082 GCTCCAACCATTGAATTAAAAGTGG 59.361 40.000 0.00 0.00 0.00 4.00
29 30 6.222389 TGCTCCAACCATTGAATTAAAAGTG 58.778 36.000 0.00 0.00 0.00 3.16
30 31 6.418057 TGCTCCAACCATTGAATTAAAAGT 57.582 33.333 0.00 0.00 0.00 2.66
31 32 7.910441 AATGCTCCAACCATTGAATTAAAAG 57.090 32.000 0.00 0.00 32.06 2.27
32 33 8.688747 AAAATGCTCCAACCATTGAATTAAAA 57.311 26.923 0.00 0.00 33.48 1.52
33 34 8.688747 AAAAATGCTCCAACCATTGAATTAAA 57.311 26.923 0.00 0.00 33.48 1.52
34 35 8.156165 AGAAAAATGCTCCAACCATTGAATTAA 58.844 29.630 0.00 0.00 33.48 1.40
35 36 7.678837 AGAAAAATGCTCCAACCATTGAATTA 58.321 30.769 0.00 0.00 33.48 1.40
36 37 6.536447 AGAAAAATGCTCCAACCATTGAATT 58.464 32.000 0.00 0.00 33.48 2.17
37 38 6.117975 AGAAAAATGCTCCAACCATTGAAT 57.882 33.333 0.00 0.00 33.48 2.57
38 39 5.549742 AGAAAAATGCTCCAACCATTGAA 57.450 34.783 0.00 0.00 33.48 2.69
39 40 5.299148 CAAGAAAAATGCTCCAACCATTGA 58.701 37.500 0.00 0.00 33.48 2.57
40 41 4.453136 CCAAGAAAAATGCTCCAACCATTG 59.547 41.667 0.00 0.00 33.48 2.82
41 42 4.347583 TCCAAGAAAAATGCTCCAACCATT 59.652 37.500 0.00 0.00 34.56 3.16
42 43 3.903090 TCCAAGAAAAATGCTCCAACCAT 59.097 39.130 0.00 0.00 0.00 3.55
43 44 3.069443 GTCCAAGAAAAATGCTCCAACCA 59.931 43.478 0.00 0.00 0.00 3.67
44 45 3.554960 GGTCCAAGAAAAATGCTCCAACC 60.555 47.826 0.00 0.00 0.00 3.77
45 46 3.069443 TGGTCCAAGAAAAATGCTCCAAC 59.931 43.478 0.00 0.00 0.00 3.77
46 47 3.069443 GTGGTCCAAGAAAAATGCTCCAA 59.931 43.478 0.00 0.00 0.00 3.53
47 48 2.627699 GTGGTCCAAGAAAAATGCTCCA 59.372 45.455 0.00 0.00 0.00 3.86
48 49 2.893489 AGTGGTCCAAGAAAAATGCTCC 59.107 45.455 0.00 0.00 0.00 4.70
49 50 4.590850 AAGTGGTCCAAGAAAAATGCTC 57.409 40.909 0.00 0.00 0.00 4.26
50 51 5.357742 AAAAGTGGTCCAAGAAAAATGCT 57.642 34.783 0.00 0.00 0.00 3.79
51 52 7.728847 ATTAAAAGTGGTCCAAGAAAAATGC 57.271 32.000 0.00 0.00 0.00 3.56
52 53 9.323985 TGAATTAAAAGTGGTCCAAGAAAAATG 57.676 29.630 0.00 0.00 0.00 2.32
53 54 9.898152 TTGAATTAAAAGTGGTCCAAGAAAAAT 57.102 25.926 0.00 0.00 0.00 1.82
54 55 9.898152 ATTGAATTAAAAGTGGTCCAAGAAAAA 57.102 25.926 0.00 0.00 0.00 1.94
55 56 9.323985 CATTGAATTAAAAGTGGTCCAAGAAAA 57.676 29.630 0.00 0.00 0.00 2.29
56 57 7.440856 GCATTGAATTAAAAGTGGTCCAAGAAA 59.559 33.333 0.00 0.00 0.00 2.52
57 58 6.928492 GCATTGAATTAAAAGTGGTCCAAGAA 59.072 34.615 0.00 0.00 0.00 2.52
58 59 6.267471 AGCATTGAATTAAAAGTGGTCCAAGA 59.733 34.615 0.00 0.00 0.00 3.02
59 60 6.458210 AGCATTGAATTAAAAGTGGTCCAAG 58.542 36.000 0.00 0.00 0.00 3.61
60 61 6.418057 AGCATTGAATTAAAAGTGGTCCAA 57.582 33.333 0.00 0.00 0.00 3.53
61 62 7.147915 GGATAGCATTGAATTAAAAGTGGTCCA 60.148 37.037 0.00 0.00 0.00 4.02
62 63 7.203218 GGATAGCATTGAATTAAAAGTGGTCC 58.797 38.462 0.00 0.00 0.00 4.46
63 64 6.912591 CGGATAGCATTGAATTAAAAGTGGTC 59.087 38.462 0.00 0.00 0.00 4.02
64 65 6.601613 TCGGATAGCATTGAATTAAAAGTGGT 59.398 34.615 0.00 0.00 0.00 4.16
65 66 7.026631 TCGGATAGCATTGAATTAAAAGTGG 57.973 36.000 0.00 0.00 0.00 4.00
66 67 9.173939 GAATCGGATAGCATTGAATTAAAAGTG 57.826 33.333 0.00 0.00 0.00 3.16
67 68 9.125026 AGAATCGGATAGCATTGAATTAAAAGT 57.875 29.630 0.00 0.00 0.00 2.66
68 69 9.604626 GAGAATCGGATAGCATTGAATTAAAAG 57.395 33.333 0.00 0.00 0.00 2.27
69 70 9.342308 AGAGAATCGGATAGCATTGAATTAAAA 57.658 29.630 0.00 0.00 42.67 1.52
70 71 8.908786 AGAGAATCGGATAGCATTGAATTAAA 57.091 30.769 0.00 0.00 42.67 1.52
71 72 8.370940 AGAGAGAATCGGATAGCATTGAATTAA 58.629 33.333 0.00 0.00 42.67 1.40
72 73 7.901029 AGAGAGAATCGGATAGCATTGAATTA 58.099 34.615 0.00 0.00 42.67 1.40
73 74 6.767456 AGAGAGAATCGGATAGCATTGAATT 58.233 36.000 0.00 0.00 42.67 2.17
74 75 6.357579 AGAGAGAATCGGATAGCATTGAAT 57.642 37.500 0.00 0.00 42.67 2.57
75 76 5.798125 AGAGAGAATCGGATAGCATTGAA 57.202 39.130 0.00 0.00 42.67 2.69
76 77 5.798125 AAGAGAGAATCGGATAGCATTGA 57.202 39.130 0.00 0.00 42.67 2.57
77 78 7.151308 AGTTAAGAGAGAATCGGATAGCATTG 58.849 38.462 0.00 0.00 42.67 2.82
78 79 7.296628 AGTTAAGAGAGAATCGGATAGCATT 57.703 36.000 0.00 0.00 42.67 3.56
79 80 6.348950 CGAGTTAAGAGAGAATCGGATAGCAT 60.349 42.308 0.00 0.00 42.67 3.79
80 81 5.049336 CGAGTTAAGAGAGAATCGGATAGCA 60.049 44.000 0.00 0.00 42.67 3.49
81 82 5.387279 CGAGTTAAGAGAGAATCGGATAGC 58.613 45.833 0.00 0.00 42.67 2.97
82 83 5.049336 TGCGAGTTAAGAGAGAATCGGATAG 60.049 44.000 0.00 0.00 42.67 2.08
83 84 4.820173 TGCGAGTTAAGAGAGAATCGGATA 59.180 41.667 0.00 0.00 42.67 2.59
84 85 3.632604 TGCGAGTTAAGAGAGAATCGGAT 59.367 43.478 0.00 0.00 42.67 4.18
85 86 3.014623 TGCGAGTTAAGAGAGAATCGGA 58.985 45.455 0.00 0.00 42.67 4.55
86 87 3.422417 TGCGAGTTAAGAGAGAATCGG 57.578 47.619 0.00 0.00 42.67 4.18
87 88 5.957910 AAATGCGAGTTAAGAGAGAATCG 57.042 39.130 0.00 0.00 42.67 3.34
88 89 7.969314 AGAAAAATGCGAGTTAAGAGAGAATC 58.031 34.615 0.00 0.00 0.00 2.52
89 90 7.913674 AGAAAAATGCGAGTTAAGAGAGAAT 57.086 32.000 0.00 0.00 0.00 2.40
90 91 7.063544 GCTAGAAAAATGCGAGTTAAGAGAGAA 59.936 37.037 0.00 0.00 0.00 2.87
91 92 6.531948 GCTAGAAAAATGCGAGTTAAGAGAGA 59.468 38.462 0.00 0.00 0.00 3.10
92 93 6.311445 TGCTAGAAAAATGCGAGTTAAGAGAG 59.689 38.462 0.00 0.00 0.00 3.20
93 94 6.163476 TGCTAGAAAAATGCGAGTTAAGAGA 58.837 36.000 0.00 0.00 0.00 3.10
94 95 6.408858 TGCTAGAAAAATGCGAGTTAAGAG 57.591 37.500 0.00 0.00 0.00 2.85
95 96 6.985188 ATGCTAGAAAAATGCGAGTTAAGA 57.015 33.333 0.00 0.00 0.00 2.10
96 97 7.852945 CCTTATGCTAGAAAAATGCGAGTTAAG 59.147 37.037 0.00 0.00 0.00 1.85
97 98 7.335924 ACCTTATGCTAGAAAAATGCGAGTTAA 59.664 33.333 0.00 0.00 0.00 2.01
98 99 6.821665 ACCTTATGCTAGAAAAATGCGAGTTA 59.178 34.615 0.00 0.00 0.00 2.24
99 100 5.648092 ACCTTATGCTAGAAAAATGCGAGTT 59.352 36.000 0.00 0.00 0.00 3.01
100 101 5.065218 CACCTTATGCTAGAAAAATGCGAGT 59.935 40.000 0.00 0.00 0.00 4.18
101 102 5.504665 CCACCTTATGCTAGAAAAATGCGAG 60.505 44.000 0.00 0.00 0.00 5.03
102 103 4.335315 CCACCTTATGCTAGAAAAATGCGA 59.665 41.667 0.00 0.00 0.00 5.10
103 104 4.335315 TCCACCTTATGCTAGAAAAATGCG 59.665 41.667 0.00 0.00 0.00 4.73
104 105 5.125417 TGTCCACCTTATGCTAGAAAAATGC 59.875 40.000 0.00 0.00 0.00 3.56
105 106 6.757897 TGTCCACCTTATGCTAGAAAAATG 57.242 37.500 0.00 0.00 0.00 2.32
106 107 7.961326 AATGTCCACCTTATGCTAGAAAAAT 57.039 32.000 0.00 0.00 0.00 1.82
107 108 7.775053 AAATGTCCACCTTATGCTAGAAAAA 57.225 32.000 0.00 0.00 0.00 1.94
108 109 7.361713 CGAAAATGTCCACCTTATGCTAGAAAA 60.362 37.037 0.00 0.00 0.00 2.29
109 110 6.093495 CGAAAATGTCCACCTTATGCTAGAAA 59.907 38.462 0.00 0.00 0.00 2.52
110 111 5.584649 CGAAAATGTCCACCTTATGCTAGAA 59.415 40.000 0.00 0.00 0.00 2.10
111 112 5.116180 CGAAAATGTCCACCTTATGCTAGA 58.884 41.667 0.00 0.00 0.00 2.43
112 113 4.876107 ACGAAAATGTCCACCTTATGCTAG 59.124 41.667 0.00 0.00 0.00 3.42
113 114 4.839121 ACGAAAATGTCCACCTTATGCTA 58.161 39.130 0.00 0.00 0.00 3.49
114 115 3.686016 ACGAAAATGTCCACCTTATGCT 58.314 40.909 0.00 0.00 0.00 3.79
115 116 4.083003 TCAACGAAAATGTCCACCTTATGC 60.083 41.667 0.00 0.00 0.00 3.14
116 117 5.621197 TCAACGAAAATGTCCACCTTATG 57.379 39.130 0.00 0.00 0.00 1.90
117 118 6.264518 AGTTTCAACGAAAATGTCCACCTTAT 59.735 34.615 0.00 0.00 33.14 1.73
118 119 5.591067 AGTTTCAACGAAAATGTCCACCTTA 59.409 36.000 0.00 0.00 33.14 2.69
119 120 4.401202 AGTTTCAACGAAAATGTCCACCTT 59.599 37.500 0.00 0.00 33.14 3.50
120 121 3.951680 AGTTTCAACGAAAATGTCCACCT 59.048 39.130 0.00 0.00 33.14 4.00
121 122 4.041723 CAGTTTCAACGAAAATGTCCACC 58.958 43.478 8.35 0.00 40.97 4.61
122 123 4.915704 TCAGTTTCAACGAAAATGTCCAC 58.084 39.130 14.34 0.00 44.49 4.02
123 124 5.298026 TCATCAGTTTCAACGAAAATGTCCA 59.702 36.000 14.34 0.00 44.49 4.02
124 125 5.757886 TCATCAGTTTCAACGAAAATGTCC 58.242 37.500 14.34 0.00 44.49 4.02
125 126 6.690957 TGTTCATCAGTTTCAACGAAAATGTC 59.309 34.615 14.34 5.12 44.49 3.06
126 127 6.559810 TGTTCATCAGTTTCAACGAAAATGT 58.440 32.000 14.34 2.78 44.49 2.71
127 128 7.627585 ATGTTCATCAGTTTCAACGAAAATG 57.372 32.000 9.89 9.89 45.19 2.32
128 129 8.647143 AAATGTTCATCAGTTTCAACGAAAAT 57.353 26.923 0.00 0.00 33.14 1.82
129 130 8.472683 AAAATGTTCATCAGTTTCAACGAAAA 57.527 26.923 0.00 0.00 39.64 2.29
130 131 9.743057 ATAAAATGTTCATCAGTTTCAACGAAA 57.257 25.926 0.00 0.00 42.18 3.46
131 132 9.179552 CATAAAATGTTCATCAGTTTCAACGAA 57.820 29.630 0.00 0.00 42.18 3.85
132 133 8.349245 ACATAAAATGTTCATCAGTTTCAACGA 58.651 29.630 0.00 0.00 42.18 3.85
133 134 8.506140 ACATAAAATGTTCATCAGTTTCAACG 57.494 30.769 0.00 0.00 42.18 4.10
209 218 8.420222 ACACATTTTGAACTTTGGTCATCAATA 58.580 29.630 0.00 0.00 34.98 1.90
218 227 3.556775 CCTGCACACATTTTGAACTTTGG 59.443 43.478 0.00 0.00 0.00 3.28
252 261 3.461831 CCAAGTATTACCCCATCCTTCCA 59.538 47.826 0.00 0.00 0.00 3.53
273 285 1.272147 ACCACTGGAATTGAAGCTCCC 60.272 52.381 0.71 0.00 0.00 4.30
293 305 2.501723 GGGCTTATCTCTGGAGACAACA 59.498 50.000 2.15 0.00 42.06 3.33
303 315 6.252599 TCACATTAACATGGGCTTATCTCT 57.747 37.500 0.00 0.00 33.22 3.10
306 318 6.942532 TCTTCACATTAACATGGGCTTATC 57.057 37.500 0.00 0.00 33.22 1.75
324 336 9.869757 TCTTCAATAAACATAACTCGATCTTCA 57.130 29.630 0.00 0.00 0.00 3.02
343 355 8.175925 TCAGTCATAGATCGAAGATCTTCAAT 57.824 34.615 29.93 20.74 45.12 2.57
391 408 4.430007 CTTAATGACCACAGTAAGCGCTA 58.570 43.478 12.05 0.00 43.88 4.26
400 417 3.123621 GCGTCAAGTCTTAATGACCACAG 59.876 47.826 2.19 0.00 46.46 3.66
406 423 6.710597 ACTATAGGCGTCAAGTCTTAATGA 57.289 37.500 4.43 0.00 35.65 2.57
414 431 2.311124 GGCAACTATAGGCGTCAAGT 57.689 50.000 4.43 0.00 0.00 3.16
426 443 2.486548 GCCCAATAAGGATCGGCAACTA 60.487 50.000 1.17 0.00 41.22 2.24
432 449 1.302511 CCGGCCCAATAAGGATCGG 60.303 63.158 0.00 0.00 42.87 4.18
433 450 1.966451 GCCGGCCCAATAAGGATCG 60.966 63.158 18.11 0.00 41.22 3.69
438 455 2.154462 CTTATGAGCCGGCCCAATAAG 58.846 52.381 26.26 26.26 0.00 1.73
440 457 1.347707 CTCTTATGAGCCGGCCCAATA 59.652 52.381 26.15 15.83 33.12 1.90
441 458 0.109342 CTCTTATGAGCCGGCCCAAT 59.891 55.000 26.15 16.96 33.12 3.16
442 459 0.980754 TCTCTTATGAGCCGGCCCAA 60.981 55.000 26.15 9.69 40.03 4.12
443 460 0.764369 ATCTCTTATGAGCCGGCCCA 60.764 55.000 26.15 20.75 40.03 5.36
446 463 0.681733 TCCATCTCTTATGAGCCGGC 59.318 55.000 21.89 21.89 40.03 6.13
448 465 1.274728 CCCTCCATCTCTTATGAGCCG 59.725 57.143 0.72 0.00 40.03 5.52
449 466 1.627834 CCCCTCCATCTCTTATGAGCC 59.372 57.143 0.72 0.00 40.03 4.70
450 467 2.301583 GACCCCTCCATCTCTTATGAGC 59.698 54.545 0.72 0.00 40.03 4.26
452 469 2.250008 TGGACCCCTCCATCTCTTATGA 59.750 50.000 0.00 0.00 42.15 2.15
453 470 2.694397 TGGACCCCTCCATCTCTTATG 58.306 52.381 0.00 0.00 42.15 1.90
496 513 0.522286 CACACAACTTCAACGCGCAA 60.522 50.000 5.73 0.00 0.00 4.85
497 514 1.061729 CACACAACTTCAACGCGCA 59.938 52.632 5.73 0.00 0.00 6.09
501 518 0.732571 AGGTGCACACAACTTCAACG 59.267 50.000 20.43 0.00 42.91 4.10
512 529 3.684305 CGAAGATGTGAATAAGGTGCACA 59.316 43.478 20.43 0.00 45.40 4.57
513 530 3.684788 ACGAAGATGTGAATAAGGTGCAC 59.315 43.478 8.80 8.80 0.00 4.57
552 571 8.462811 CGTTCATCCTAGTTAGCAGTCATATAT 58.537 37.037 0.00 0.00 0.00 0.86
560 579 4.902443 TCTCGTTCATCCTAGTTAGCAG 57.098 45.455 0.00 0.00 0.00 4.24
621 640 5.465724 GTGAACTTGTGATCTTTCCTTACGT 59.534 40.000 0.00 0.00 0.00 3.57
745 765 1.380302 GCCTTTCCTGGAGCTGGAA 59.620 57.895 13.49 0.00 39.18 3.53
746 766 1.845627 CTGCCTTTCCTGGAGCTGGA 61.846 60.000 13.49 0.00 0.00 3.86
747 767 1.378250 CTGCCTTTCCTGGAGCTGG 60.378 63.158 7.77 7.45 0.00 4.85
748 768 0.676151 GACTGCCTTTCCTGGAGCTG 60.676 60.000 10.44 10.44 0.00 4.24
749 769 1.130054 TGACTGCCTTTCCTGGAGCT 61.130 55.000 7.77 0.00 0.00 4.09
750 770 0.957888 GTGACTGCCTTTCCTGGAGC 60.958 60.000 0.00 0.00 0.00 4.70
751 771 0.397941 TGTGACTGCCTTTCCTGGAG 59.602 55.000 0.00 0.00 0.00 3.86
752 772 0.843309 TTGTGACTGCCTTTCCTGGA 59.157 50.000 0.00 0.00 0.00 3.86
753 773 0.954452 GTTGTGACTGCCTTTCCTGG 59.046 55.000 0.00 0.00 0.00 4.45
754 774 1.679139 TGTTGTGACTGCCTTTCCTG 58.321 50.000 0.00 0.00 0.00 3.86
755 775 2.092429 TCTTGTTGTGACTGCCTTTCCT 60.092 45.455 0.00 0.00 0.00 3.36
764 784 4.914983 ACATCCATCATCTTGTTGTGACT 58.085 39.130 0.00 0.00 0.00 3.41
853 874 2.674380 CCTGTTGTCCAGCCCTGC 60.674 66.667 0.00 0.00 40.06 4.85
857 878 1.662044 CTTTGCCTGTTGTCCAGCC 59.338 57.895 0.00 0.00 40.06 4.85
866 887 1.986882 CAAACCTCTCCTTTGCCTGT 58.013 50.000 0.00 0.00 0.00 4.00
914 935 2.025898 AGTAAGAGTTAGAGAGCGGGC 58.974 52.381 0.00 0.00 0.00 6.13
915 936 3.949113 AGAAGTAAGAGTTAGAGAGCGGG 59.051 47.826 0.00 0.00 0.00 6.13
916 937 4.636648 TGAGAAGTAAGAGTTAGAGAGCGG 59.363 45.833 0.00 0.00 0.00 5.52
917 938 5.729454 GCTGAGAAGTAAGAGTTAGAGAGCG 60.729 48.000 0.00 0.00 0.00 5.03
918 939 5.357032 AGCTGAGAAGTAAGAGTTAGAGAGC 59.643 44.000 0.00 0.00 0.00 4.09
919 940 6.038271 GGAGCTGAGAAGTAAGAGTTAGAGAG 59.962 46.154 0.00 0.00 0.00 3.20
920 941 5.883673 GGAGCTGAGAAGTAAGAGTTAGAGA 59.116 44.000 0.00 0.00 0.00 3.10
921 942 5.885912 AGGAGCTGAGAAGTAAGAGTTAGAG 59.114 44.000 0.00 0.00 0.00 2.43
922 943 5.822204 AGGAGCTGAGAAGTAAGAGTTAGA 58.178 41.667 0.00 0.00 0.00 2.10
925 946 3.767131 GGAGGAGCTGAGAAGTAAGAGTT 59.233 47.826 0.00 0.00 0.00 3.01
951 972 4.510167 AGTAATTGATGGGTTGAGAGGG 57.490 45.455 0.00 0.00 0.00 4.30
957 978 3.951680 GGTGGGTAGTAATTGATGGGTTG 59.048 47.826 0.00 0.00 0.00 3.77
959 980 3.470868 AGGTGGGTAGTAATTGATGGGT 58.529 45.455 0.00 0.00 0.00 4.51
992 1013 1.048160 TCTAGCACGCATGGGATGGA 61.048 55.000 17.76 6.57 0.00 3.41
996 1021 0.390492 CATCTCTAGCACGCATGGGA 59.610 55.000 17.76 0.00 0.00 4.37
1024 1049 5.786121 AAGAGGATGAGAAAAATGGAGGA 57.214 39.130 0.00 0.00 0.00 3.71
1035 1060 2.499289 GGAGAGCACAAAGAGGATGAGA 59.501 50.000 0.00 0.00 0.00 3.27
1047 1072 1.241315 TGACGACGATGGAGAGCACA 61.241 55.000 0.00 0.00 0.00 4.57
1049 1074 1.506718 GTGACGACGATGGAGAGCA 59.493 57.895 0.00 0.00 0.00 4.26
1077 1102 0.108945 GACGTCGAACCCGGAAGAAT 60.109 55.000 0.73 0.00 36.24 2.40
1088 1113 2.353579 TCATCGCTAATCAGACGTCGAA 59.646 45.455 10.46 2.31 0.00 3.71
1092 1117 2.864097 GCCATCATCGCTAATCAGACGT 60.864 50.000 0.00 0.00 0.00 4.34
1095 1120 1.337167 CCGCCATCATCGCTAATCAGA 60.337 52.381 0.00 0.00 0.00 3.27
1195 1220 2.069273 GTATGTCATAGCATCCGTGGC 58.931 52.381 0.00 0.00 0.00 5.01
1200 1225 3.055530 CCTCCCTGTATGTCATAGCATCC 60.056 52.174 0.00 0.00 0.00 3.51
1210 1235 0.983378 GGGCAGTCCTCCCTGTATGT 60.983 60.000 0.00 0.00 40.66 2.29
1216 1241 3.003763 GAACGGGCAGTCCTCCCT 61.004 66.667 0.00 0.00 41.69 4.20
1337 1362 1.600485 GTCAACAACAGTGGTTACCGG 59.400 52.381 0.00 0.00 34.87 5.28
1347 1372 8.763049 TCTGTAATTAGAGATGTCAACAACAG 57.237 34.615 8.20 0.00 42.37 3.16
1380 1406 2.485479 GGTGGCAGAGACAAGACAAGAA 60.485 50.000 0.00 0.00 0.00 2.52
1554 1580 1.467734 CTCGTATATCCTCGAACCGGG 59.532 57.143 6.32 0.00 35.69 5.73
1664 1690 3.050703 GTCGACCATGACGAGCATT 57.949 52.632 3.51 0.00 40.37 3.56
1989 2037 0.608035 TGCCCAATCTTTCACCGTCC 60.608 55.000 0.00 0.00 0.00 4.79
2101 2152 0.734889 GATCCCATTGGTTCACGCAG 59.265 55.000 1.20 0.00 31.66 5.18
2106 2157 1.208706 TAGCGGATCCCATTGGTTCA 58.791 50.000 6.06 0.00 32.78 3.18
2108 2159 1.745827 CGTTAGCGGATCCCATTGGTT 60.746 52.381 6.06 0.00 0.00 3.67
2135 2186 1.375268 GCTGGTCACTCTCACTGGC 60.375 63.158 0.00 0.00 0.00 4.85
2182 2233 2.338620 CTCCGTGCCACACTCGAA 59.661 61.111 0.00 0.00 37.45 3.71
2302 2353 2.106938 GCATCCGATGGCGTCTCA 59.893 61.111 10.41 0.00 35.23 3.27
2320 2371 2.044650 TGGCTGCAATCCTCTGGC 60.045 61.111 0.50 0.00 0.00 4.85
2474 2526 7.242800 TGACTAGTCAAATCTTGCCTTCCAAG 61.243 42.308 23.24 0.00 43.21 3.61
2576 2634 9.998106 GGGCCTGGTATGTGTATAATTATATAG 57.002 37.037 8.40 0.00 0.00 1.31
2583 2641 4.601420 TGATGGGCCTGGTATGTGTATAAT 59.399 41.667 4.53 0.00 0.00 1.28
2586 2644 2.417652 TGATGGGCCTGGTATGTGTAT 58.582 47.619 4.53 0.00 0.00 2.29
2590 2648 1.595311 TCTTGATGGGCCTGGTATGT 58.405 50.000 4.53 0.00 0.00 2.29
2591 2649 2.965671 ATCTTGATGGGCCTGGTATG 57.034 50.000 4.53 0.00 0.00 2.39
2592 2650 5.327732 CATTAATCTTGATGGGCCTGGTAT 58.672 41.667 4.53 0.00 0.00 2.73
2593 2651 4.447616 CCATTAATCTTGATGGGCCTGGTA 60.448 45.833 4.53 0.00 39.80 3.25
2594 2652 3.569491 CATTAATCTTGATGGGCCTGGT 58.431 45.455 4.53 0.00 0.00 4.00
2595 2653 2.895404 CCATTAATCTTGATGGGCCTGG 59.105 50.000 4.53 0.00 39.80 4.45
2596 2654 3.825014 CTCCATTAATCTTGATGGGCCTG 59.175 47.826 4.53 0.00 42.71 4.85
2597 2655 3.464833 ACTCCATTAATCTTGATGGGCCT 59.535 43.478 4.53 0.00 42.71 5.19
2598 2656 3.837355 ACTCCATTAATCTTGATGGGCC 58.163 45.455 12.30 0.00 42.71 5.80
2599 2657 5.360714 TCAAACTCCATTAATCTTGATGGGC 59.639 40.000 12.30 0.00 42.71 5.36
2600 2658 7.592885 ATCAAACTCCATTAATCTTGATGGG 57.407 36.000 12.30 7.08 42.71 4.00
2601 2659 7.924412 CCAATCAAACTCCATTAATCTTGATGG 59.076 37.037 7.27 7.27 43.54 3.51
2602 2660 8.689061 TCCAATCAAACTCCATTAATCTTGATG 58.311 33.333 0.00 0.00 34.59 3.07
2603 2661 8.827832 TCCAATCAAACTCCATTAATCTTGAT 57.172 30.769 0.00 0.00 35.56 2.57
2604 2662 8.689061 CATCCAATCAAACTCCATTAATCTTGA 58.311 33.333 0.00 0.00 0.00 3.02
2605 2663 8.689061 TCATCCAATCAAACTCCATTAATCTTG 58.311 33.333 0.00 0.00 0.00 3.02
2607 2665 8.857098 CATCATCCAATCAAACTCCATTAATCT 58.143 33.333 0.00 0.00 0.00 2.40
2608 2666 8.853126 TCATCATCCAATCAAACTCCATTAATC 58.147 33.333 0.00 0.00 0.00 1.75
2609 2667 8.771521 TCATCATCCAATCAAACTCCATTAAT 57.228 30.769 0.00 0.00 0.00 1.40
2610 2668 7.835682 ACTCATCATCCAATCAAACTCCATTAA 59.164 33.333 0.00 0.00 0.00 1.40
2611 2669 7.348815 ACTCATCATCCAATCAAACTCCATTA 58.651 34.615 0.00 0.00 0.00 1.90
2613 2671 5.763355 ACTCATCATCCAATCAAACTCCAT 58.237 37.500 0.00 0.00 0.00 3.41
2622 2689 6.259608 CCAAGTTCAGTACTCATCATCCAATC 59.740 42.308 0.00 0.00 35.54 2.67
2628 2695 5.482908 GTCACCAAGTTCAGTACTCATCAT 58.517 41.667 0.00 0.00 35.54 2.45
2643 2710 4.522405 TCCAACACAAATATGGTCACCAAG 59.478 41.667 0.00 0.00 36.95 3.61
2646 2713 5.885912 ACTATCCAACACAAATATGGTCACC 59.114 40.000 0.00 0.00 35.66 4.02
2655 2722 7.500892 TGTCTTTACACACTATCCAACACAAAT 59.499 33.333 0.00 0.00 0.00 2.32
2659 2726 6.854496 TTGTCTTTACACACTATCCAACAC 57.146 37.500 0.00 0.00 34.61 3.32
2668 2735 8.635765 ATTGTTGGATATTGTCTTTACACACT 57.364 30.769 0.00 0.00 34.61 3.55
2669 2736 9.341899 GAATTGTTGGATATTGTCTTTACACAC 57.658 33.333 0.00 0.00 34.61 3.82
2692 2759 8.526147 CCAGACTTGTTGAATTTTGATAGGAAT 58.474 33.333 0.00 0.00 0.00 3.01
2699 4480 4.037923 GCTCCCAGACTTGTTGAATTTTGA 59.962 41.667 0.00 0.00 0.00 2.69
2702 4483 3.837355 AGCTCCCAGACTTGTTGAATTT 58.163 40.909 0.00 0.00 0.00 1.82
2716 4497 2.688446 CGAGTGTACATCTAAGCTCCCA 59.312 50.000 0.00 0.00 0.00 4.37
2717 4498 2.688958 ACGAGTGTACATCTAAGCTCCC 59.311 50.000 0.00 0.00 0.00 4.30
2772 4563 6.481644 GCAGTCCATCTTCTTTGTATAAGAGG 59.518 42.308 0.00 0.00 35.32 3.69
2775 4566 7.044181 TCTGCAGTCCATCTTCTTTGTATAAG 58.956 38.462 14.67 0.00 0.00 1.73
2779 4570 4.890158 TCTGCAGTCCATCTTCTTTGTA 57.110 40.909 14.67 0.00 0.00 2.41
2782 4573 4.363991 ACTTCTGCAGTCCATCTTCTTT 57.636 40.909 14.67 0.00 0.00 2.52
2787 4578 5.777223 TGCTATATACTTCTGCAGTCCATCT 59.223 40.000 14.67 0.00 36.88 2.90
2789 4580 5.305386 TGTGCTATATACTTCTGCAGTCCAT 59.695 40.000 14.67 5.92 36.88 3.41
2790 4581 4.649218 TGTGCTATATACTTCTGCAGTCCA 59.351 41.667 14.67 0.00 36.88 4.02
2791 4582 5.201713 TGTGCTATATACTTCTGCAGTCC 57.798 43.478 14.67 0.00 36.88 3.85
2792 4583 5.010112 TCCTGTGCTATATACTTCTGCAGTC 59.990 44.000 14.67 0.00 36.88 3.51
2793 4584 4.895889 TCCTGTGCTATATACTTCTGCAGT 59.104 41.667 14.67 0.00 39.87 4.40
2795 4586 5.869649 TTCCTGTGCTATATACTTCTGCA 57.130 39.130 0.00 0.00 0.00 4.41
2796 4587 6.367422 GTGATTCCTGTGCTATATACTTCTGC 59.633 42.308 0.00 0.00 0.00 4.26
2797 4588 6.870965 GGTGATTCCTGTGCTATATACTTCTG 59.129 42.308 0.00 0.00 0.00 3.02
2801 4609 4.220821 CGGGTGATTCCTGTGCTATATACT 59.779 45.833 0.00 0.00 37.78 2.12
2809 4617 2.359850 TGCGGGTGATTCCTGTGC 60.360 61.111 0.00 0.00 44.16 4.57
2813 4621 0.904865 TCACTCTGCGGGTGATTCCT 60.905 55.000 11.45 0.00 38.57 3.36
2820 4628 1.228769 TGTAGGTCACTCTGCGGGT 60.229 57.895 0.00 0.00 0.00 5.28
2823 4631 1.154016 CCGTGTAGGTCACTCTGCG 60.154 63.158 0.00 0.00 44.16 5.18
2824 4632 0.109226 GTCCGTGTAGGTCACTCTGC 60.109 60.000 0.00 0.00 44.16 4.26
2828 4636 0.959372 CTCGGTCCGTGTAGGTCACT 60.959 60.000 11.88 0.00 44.16 3.41
2839 4647 2.253513 AAAAATGTGCCTCGGTCCG 58.746 52.632 4.39 4.39 0.00 4.79
2879 4687 4.238514 CCAAAAAGACAAACACAAACCGA 58.761 39.130 0.00 0.00 0.00 4.69
2881 4689 5.933187 AACCAAAAAGACAAACACAAACC 57.067 34.783 0.00 0.00 0.00 3.27
2884 4692 5.932883 GGGTAAACCAAAAAGACAAACACAA 59.067 36.000 0.81 0.00 39.85 3.33
2885 4693 5.246429 AGGGTAAACCAAAAAGACAAACACA 59.754 36.000 0.81 0.00 43.89 3.72
2886 4694 5.579119 CAGGGTAAACCAAAAAGACAAACAC 59.421 40.000 0.81 0.00 43.89 3.32
2892 4700 4.689071 CCAACAGGGTAAACCAAAAAGAC 58.311 43.478 0.81 0.00 43.89 3.01
2906 4714 2.510613 ACACCGAAAATACCAACAGGG 58.489 47.619 0.00 0.00 44.81 4.45
2908 4716 6.737254 AGATAACACCGAAAATACCAACAG 57.263 37.500 0.00 0.00 0.00 3.16
2913 4721 8.483307 TGTAAGAAGATAACACCGAAAATACC 57.517 34.615 0.00 0.00 0.00 2.73
2922 4730 7.393515 ACCCAAAGAATGTAAGAAGATAACACC 59.606 37.037 0.00 0.00 0.00 4.16
2928 4736 7.039011 GGGAAAACCCAAAGAATGTAAGAAGAT 60.039 37.037 0.00 0.00 36.34 2.40
2941 4749 4.771114 AAAGGAAAGGGAAAACCCAAAG 57.229 40.909 8.05 0.00 41.63 2.77
2942 4750 5.251932 AGAAAAAGGAAAGGGAAAACCCAAA 59.748 36.000 8.05 0.00 41.63 3.28
2944 4752 4.367166 AGAAAAAGGAAAGGGAAAACCCA 58.633 39.130 8.05 0.00 41.63 4.51
2952 4760 8.792830 AAAGAAAGAAAAGAAAAAGGAAAGGG 57.207 30.769 0.00 0.00 0.00 3.95
2979 4787 5.060427 TGGAACATGGAAGAAAAGAGGAA 57.940 39.130 0.00 0.00 0.00 3.36
2996 4804 5.591099 TGCACAAGAGAAAGAAAATGGAAC 58.409 37.500 0.00 0.00 0.00 3.62
3029 4846 8.618677 AGTCATGCATTTCTCTATAAATGTGTG 58.381 33.333 0.00 9.19 44.90 3.82
3116 4953 4.051237 GTTGACCTGTTTGAAAAGGATGC 58.949 43.478 6.96 0.00 37.01 3.91
3381 5222 6.843069 ATTTCCTTTCGTGGAATTGTTTTG 57.157 33.333 7.78 0.00 44.55 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.